HHsearch alignment for GI: 254780321 and conserved domain: cd04175

>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=99.37  E-value=2.6e-11  Score=95.37  Aligned_cols=154  Identities=23%  Similarity=0.235  Sum_probs=101.6

Q ss_pred             EEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHCCEEEEE-EEEEEEECCCCCEEEEEEEECCCCCHH
Q ss_conf             7999801389877889999998298054444311305867798719505232-799997437884389999617873002
Q gi|254780321|r   13 NFSIVAHIDHGKSTLADRFIQHCRGLTEREMSSQVLDNMDIERERGITIKAQ-TVRLNYTSTDAKDYQLNLIDTPGHVDF   91 (606)
Q Consensus        13 N~~IiaHvDhGKTTL~d~lL~~tg~i~~~~~~~~vlD~~~~EreRGITIka~-~~~~~~~~~~~~~y~iNlIDTPGH~DF   91 (606)
T Consensus         3 KIvllGd~~VGKTsli~r~~--~~~f~~~y-~--------------pTi~~~~~k~i---~~~~~~~~l~iwDtaG~e~~   62 (164)
T cd04175           3 KLVVLGSGGVGKSALTVQFV--QGIFVEKY-D--------------PTIEDSYRKQV---EVDGQQCMLEILDTAGTEQF   62 (164)
T ss_pred             EEEEECCCCCCHHHHHHHHH--HCCCCCCC-C--------------CCEEEEEEEEE---EECCEEEEEEECCCCCCHHH
T ss_conf             99998999975999999997--09288656-8--------------84046899999---99999999985147754324


Q ss_pred             HHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHH-H----CCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             799999997302689999868788655899999999-7----09967998326788753211338887755532232100
Q gi|254780321|r   92 TYEVSRSLSACEGSLLVVDATQGVEAQTLANVYQAI-D----NNHEIITVLNKADLPSADPDRVKKQIEETIGISTEDAL  166 (606)
Q Consensus        92 ~~EV~r~l~a~dgaiLvVdA~~Gvq~QT~~~~~~A~-~----~~l~~I~viNKiD~~~A~~e~v~~ei~~~~g~~~~~ii  166 (606)
T Consensus        63 ~~l~~~y~~~a~~~ilvydvt~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~DL~~~r~V-~~~~~~~~a~~~~~~~~  141 (164)
T cd04175          63 TAMRDLYMKNGQGFVLVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVV-GKEQGQNLARQWGCAFL  141 (164)
T ss_pred             HHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHCCCC-CHHHHHHHHHHCCCEEE
T ss_conf             56788873578689999607877789999999999998628999639985214572220689-99999999998599999


Q ss_pred             HHHHHCCCCCCHHHHHHHHHH
Q ss_conf             011100223200678776321
Q gi|254780321|r  167 LVSAKTGEGIPLLLERIVQQL  187 (606)
Q Consensus       167 ~vSAktG~GV~~LLd~Iv~~i  187 (606)
T Consensus       142 E~SAk~~~nV~~~F~~l~~~i  162 (164)
T cd04175         142 ETSAKAKINVNEIFYDLVRQI  162 (164)
T ss_pred             EECCCCCCCHHHHHHHHHHHH
T ss_conf             966898817899999999986