HHsearch alignment for GI: 254780321 and conserved domain: cd04175
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=99.37 E-value=2.6e-11 Score=95.37 Aligned_cols=154 Identities=23% Similarity=0.235 Sum_probs=101.6
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHCCEEEEE-EEEEEEECCCCCEEEEEEEECCCCCHH
Q ss_conf 7999801389877889999998298054444311305867798719505232-799997437884389999617873002
Q gi|254780321|r 13 NFSIVAHIDHGKSTLADRFIQHCRGLTEREMSSQVLDNMDIERERGITIKAQ-TVRLNYTSTDAKDYQLNLIDTPGHVDF 91 (606)
Q Consensus 13 N~~IiaHvDhGKTTL~d~lL~~tg~i~~~~~~~~vlD~~~~EreRGITIka~-~~~~~~~~~~~~~y~iNlIDTPGH~DF 91 (606)
T Consensus 3 KIvllGd~~VGKTsli~r~~--~~~f~~~y-~--------------pTi~~~~~k~i---~~~~~~~~l~iwDtaG~e~~ 62 (164)
T cd04175 3 KLVVLGSGGVGKSALTVQFV--QGIFVEKY-D--------------PTIEDSYRKQV---EVDGQQCMLEILDTAGTEQF 62 (164)
T ss_pred EEEEECCCCCCHHHHHHHHH--HCCCCCCC-C--------------CCEEEEEEEEE---EECCEEEEEEECCCCCCHHH
T ss_conf 99998999975999999997--09288656-8--------------84046899999---99999999985147754324
Q ss_pred HHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHH-H----CCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 799999997302689999868788655899999999-7----09967998326788753211338887755532232100
Q gi|254780321|r 92 TYEVSRSLSACEGSLLVVDATQGVEAQTLANVYQAI-D----NNHEIITVLNKADLPSADPDRVKKQIEETIGISTEDAL 166 (606)
Q Consensus 92 ~~EV~r~l~a~dgaiLvVdA~~Gvq~QT~~~~~~A~-~----~~l~~I~viNKiD~~~A~~e~v~~ei~~~~g~~~~~ii 166 (606)
T Consensus 63 ~~l~~~y~~~a~~~ilvydvt~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~DL~~~r~V-~~~~~~~~a~~~~~~~~ 141 (164)
T cd04175 63 TAMRDLYMKNGQGFVLVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVV-GKEQGQNLARQWGCAFL 141 (164)
T ss_pred HHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHCCCC-CHHHHHHHHHHCCCEEE
T ss_conf 56788873578689999607877789999999999998628999639985214572220689-99999999998599999
Q ss_pred HHHHHCCCCCCHHHHHHHHHH
Q ss_conf 011100223200678776321
Q gi|254780321|r 167 LVSAKTGEGIPLLLERIVQQL 187 (606)
Q Consensus 167 ~vSAktG~GV~~LLd~Iv~~i 187 (606)
T Consensus 142 E~SAk~~~nV~~~F~~l~~~i 162 (164)
T cd04175 142 ETSAKAKINVNEIFYDLVRQI 162 (164)
T ss_pred EECCCCCCCHHHHHHHHHHHH
T ss_conf 966898817899999999986