Query gi|254780321|ref|YP_003064734.1| GTP-binding protein LepA [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 606
No_of_seqs 317 out of 5227
Neff 6.0
Searched_HMMs 39220
Date Sun May 29 15:36:42 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780321.hhm -d /home/congqian_1/database/cdd/Cdd.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01393 lepA GTP-binding pro 100.0 0 0 2101.7 38.4 594 9-604 1-598 (598)
2 PRK05433 GTP-binding protein L 100.0 0 0 1768.7 43.3 599 6-606 2-601 (601)
3 COG0481 LepA Membrane GTPase L 100.0 0 0 1726.4 41.9 601 4-606 2-603 (603)
4 KOG0462 consensus 100.0 0 0 1489.6 35.1 594 6-603 55-650 (650)
5 TIGR01394 TypA_BipA GTP-bindin 100.0 0 0 1165.1 24.2 518 11-587 1-567 (609)
6 PRK10218 GTP-binding protein; 100.0 0 0 1101.5 37.1 535 8-605 2-576 (607)
7 COG1217 TypA Predicted membran 100.0 0 0 963.3 29.4 514 8-584 2-553 (603)
8 PRK00007 elongation factor G; 100.0 0 0 904.9 39.5 467 4-486 3-679 (693)
9 PRK13351 elongation factor G; 100.0 0 0 861.0 41.4 466 5-487 2-676 (687)
10 PRK12740 elongation factor G; 100.0 0 0 854.4 39.2 454 17-487 1-660 (670)
11 PRK12739 elongation factor G; 100.0 0 0 849.3 40.9 466 4-486 3-677 (693)
12 PRK07560 elongation factor EF- 100.0 0 0 849.8 40.0 468 8-487 17-699 (730)
13 TIGR00484 EF-G translation elo 100.0 0 0 868.6 16.6 469 5-487 4-691 (705)
14 COG0480 FusA Translation elong 100.0 0 0 838.6 38.4 467 6-488 5-680 (697)
15 KOG0465 consensus 100.0 0 0 786.1 24.1 465 5-487 33-709 (721)
16 PRK00741 prfC peptide chain re 100.0 0 0 670.5 28.9 358 7-381 6-467 (526)
17 TIGR00490 aEF-2 translation el 100.0 0 0 593.0 26.4 466 8-486 16-702 (724)
18 KOG0464 consensus 100.0 0 0 598.4 19.3 470 4-488 30-738 (753)
19 COG4108 PrfC Peptide chain rel 100.0 0 0 496.1 22.1 359 7-381 8-469 (528)
20 KOG0469 consensus 100.0 0 0 487.7 22.3 479 9-507 17-815 (842)
21 TIGR00503 prfC peptide chain r 100.0 0 0 462.2 12.3 361 5-381 5-471 (530)
22 KOG0467 consensus 100.0 0 0 416.6 23.3 469 5-489 3-830 (887)
23 cd01890 LepA LepA subfamily. 100.0 0 0 419.5 17.7 179 12-190 1-179 (179)
24 cd01891 TypA_BipA TypA (tyrosi 100.0 0 0 399.6 17.3 176 10-190 1-194 (194)
25 cd01885 EF2 EF2 (for archaea a 100.0 0 0 386.4 17.0 179 12-190 1-222 (222)
26 cd04170 EF-G_bact Elongation f 100.0 0 0 385.3 16.3 142 13-159 1-145 (268)
27 cd04169 RF3 RF3 subfamily. Pe 100.0 0 0 384.9 16.5 176 10-190 1-267 (267)
28 KOG0468 consensus 100.0 0 0 369.8 26.7 467 9-486 126-905 (971)
29 cd04167 Snu114p Snu114p subfam 100.0 0 0 379.0 16.1 179 12-190 1-213 (213)
30 cd01886 EF-G Elongation factor 100.0 0 0 372.6 16.9 142 13-159 1-145 (270)
31 PRK12317 elongation factor 1-a 100.0 0 0 364.2 19.0 267 11-289 7-313 (426)
32 cd04168 TetM_like Tet(M)-like 100.0 0 0 365.7 16.3 172 13-189 1-236 (237)
33 PRK05124 cysN sulfate adenylyl 100.0 0 0 351.2 21.5 268 9-289 25-330 (475)
34 PTZ00336 elongation factor 1-a 100.0 0 0 354.4 18.6 265 12-288 8-319 (449)
35 PTZ00141 elongation factor 1 a 100.0 0 0 349.8 17.6 266 11-288 7-317 (443)
36 COG5256 TEF1 Translation elong 100.0 0 0 348.8 18.1 273 12-297 8-325 (428)
37 PRK12736 elongation factor Tu; 100.0 0 0 352.2 14.4 279 1-288 1-298 (394)
38 PRK00049 elongation factor Tu; 100.0 0 0 346.2 18.2 277 1-288 1-301 (397)
39 cd00881 GTP_translation_factor 100.0 0 0 345.4 17.3 173 13-190 1-189 (189)
40 cd01884 EF_Tu EF-Tu subfamily. 100.0 0 0 347.0 14.4 174 12-190 3-195 (195)
41 PRK12735 elongation factor Tu; 100.0 0 0 343.4 16.9 277 1-288 1-300 (396)
42 TIGR00483 EF-1_alpha translati 100.0 0 0 350.8 11.1 320 11-343 7-393 (445)
43 PRK04000 translation initiatio 100.0 0 0 342.1 17.2 270 1-288 1-318 (410)
44 CHL00071 tufA elongation facto 100.0 0 0 339.4 17.5 267 11-288 12-308 (409)
45 cd01889 SelB_euk SelB subfamil 100.0 0 0 339.7 15.6 172 13-192 2-190 (192)
46 PRK05506 bifunctional sulfate 100.0 0 0 328.7 20.8 268 9-289 5-309 (613)
47 TIGR00475 selB selenocysteine- 100.0 0 0 330.4 15.2 257 13-287 2-269 (627)
48 pfam06421 LepA_C GTP-binding p 100.0 0 0 343.0 5.4 108 496-603 1-108 (108)
49 PRK10512 selenocysteinyl-tRNA- 100.0 4.2E-45 0 322.4 18.5 249 14-287 3-260 (615)
50 PRK12312 infB translation init 100.0 2.1E-44 0 317.6 16.5 424 13-490 119-600 (610)
51 CHL00189 infB translation init 100.0 2.7E-44 0 316.9 16.9 426 13-490 274-758 (770)
52 cd01883 EF1_alpha Eukaryotic e 100.0 2.2E-44 0 317.4 14.6 173 13-191 1-219 (219)
53 pfam00009 GTP_EFTU Elongation 100.0 5.2E-44 0 315.0 15.1 176 9-189 1-185 (185)
54 KOG0460 consensus 100.0 2.4E-44 0 317.3 11.3 264 12-288 55-342 (449)
55 PTZ00327 eukaryotic translatio 100.0 1.4E-42 0 305.4 18.6 263 11-288 37-355 (460)
56 PRK05306 infB translation init 100.0 1.3E-42 0 305.7 18.1 427 13-490 343-828 (839)
57 COG0050 TufB GTPases - transla 100.0 2E-43 0 311.0 13.1 265 11-288 12-298 (394)
58 cd04166 CysN_ATPS CysN_ATPS su 100.0 9E-42 0 299.9 14.2 160 13-177 1-183 (208)
59 cd01888 eIF2_gamma eIF2-gamma 100.0 4.1E-42 0 302.2 11.4 167 13-191 2-202 (203)
60 PRK04004 translation initiatio 100.0 2.1E-39 5.2E-44 284.1 17.0 211 14-239 8-271 (592)
61 KOG0458 consensus 100.0 1.9E-38 4.8E-43 277.6 16.5 272 6-290 172-494 (603)
62 KOG1145 consensus 100.0 1.8E-38 4.7E-43 277.7 16.3 247 13-287 155-408 (683)
63 COG0532 InfB Translation initi 100.0 2E-38 5.2E-43 277.4 15.9 209 14-240 8-222 (509)
64 COG3276 SelB Selenocysteine-sp 100.0 7.4E-38 1.9E-42 273.6 15.7 251 13-287 2-256 (447)
65 COG2895 CysN GTPases - Sulfate 100.0 3.8E-37 9.7E-42 268.8 15.0 290 11-319 6-335 (431)
66 TIGR02034 CysN sulfate adenyly 100.0 1E-37 2.6E-42 272.7 11.1 286 14-317 3-331 (411)
67 TIGR00485 EF-Tu translation el 100.0 4.8E-36 1.2E-40 261.5 10.5 270 10-288 11-298 (394)
68 cd04171 SelB SelB subfamily. 100.0 2.1E-34 5.4E-39 250.4 14.1 156 14-185 3-163 (164)
69 cd01887 IF2_eIF5B IF2/eIF5B (i 100.0 1.3E-32 3.4E-37 238.4 14.1 157 13-186 2-164 (168)
70 COG5257 GCD11 Translation init 100.0 2.9E-32 7.5E-37 236.0 13.2 238 10-263 9-292 (415)
71 KOG0459 consensus 100.0 2.4E-31 6.2E-36 229.9 6.1 272 7-291 75-394 (501)
72 KOG0461 consensus 100.0 4.5E-29 1.1E-33 214.7 11.2 250 7-270 4-271 (522)
73 cd04165 GTPBP1_like GTPBP1-lik 100.0 7.8E-28 2E-32 206.4 12.4 174 14-190 2-224 (224)
74 COG5258 GTPBP1 GTPase [General 99.9 3.3E-27 8.5E-32 202.1 12.8 277 3-289 110-439 (527)
75 cd03709 lepA_C lepA_C: This fa 99.9 3.6E-27 9.1E-32 201.9 8.1 79 410-488 1-80 (80)
76 TIGR00487 IF-2 translation ini 99.9 3.3E-25 8.4E-30 188.7 13.4 207 12-237 91-303 (594)
77 TIGR00491 aIF-2 translation in 99.9 1.1E-24 2.7E-29 185.3 9.8 310 15-373 558-929 (1145)
78 cd03699 lepA_II lepA_II: This 99.9 8.1E-26 2.1E-30 192.8 4.0 86 200-285 1-86 (86)
79 KOG1144 consensus 99.9 3.3E-23 8.4E-28 175.3 13.7 235 9-252 471-752 (1064)
80 KOG0466 consensus 99.9 1.5E-23 3.8E-28 177.6 6.1 253 11-289 38-350 (466)
81 cd03710 BipA_TypA_C BipA_TypA_ 99.9 8E-22 2E-26 166.0 7.9 77 410-487 1-78 (79)
82 cd04097 mtEFG1_C mtEFG1_C: C-t 99.8 9.8E-21 2.5E-25 158.7 8.1 77 410-487 1-77 (78)
83 smart00838 EFG_C Elongation fa 99.8 1.2E-20 3E-25 158.2 8.1 79 408-487 1-79 (85)
84 cd01895 EngA2 EngA2 subfamily. 99.8 2.3E-19 5.9E-24 149.5 13.7 154 13-186 4-173 (174)
85 cd03713 EFG_mtEFG_C EFG_mtEFG_ 99.8 7.3E-20 1.9E-24 152.8 8.0 77 410-487 1-77 (78)
86 cd03711 Tet_C Tet_C: C-terminu 99.8 1.9E-19 4.7E-24 150.1 8.3 77 410-487 1-77 (78)
87 pfam00679 EFG_C Elongation fac 99.8 1.1E-19 2.9E-24 151.5 7.1 82 408-490 2-84 (89)
88 cd01894 EngA1 EngA1 subfamily. 99.8 8.7E-18 2.2E-22 138.9 13.1 149 15-187 1-157 (157)
89 cd04163 Era Era subfamily. Er 99.8 1.4E-17 3.5E-22 137.5 13.6 155 13-187 5-168 (168)
90 cd00880 Era_like Era (E. coli 99.8 1.1E-17 2.8E-22 138.2 12.1 154 16-187 1-163 (163)
91 cd01876 YihA_EngB The YihA (En 99.8 1.1E-17 2.9E-22 138.1 12.0 153 14-187 2-170 (170)
92 PRK00089 era GTP-binding prote 99.8 2.8E-17 7.1E-22 135.5 13.4 158 11-189 8-174 (296)
93 cd04096 eEF2_snRNP_like_C eEF2 99.7 3.9E-18 1E-22 141.2 7.7 77 410-487 1-79 (80)
94 cd01514 Elongation_Factor_C El 99.7 5E-18 1.3E-22 140.5 8.0 78 410-488 1-79 (79)
95 TIGR03594 GTPase_EngA ribosome 99.7 1.6E-16 4.2E-21 130.3 12.7 155 14-192 2-164 (429)
96 PRK00454 engB GTPase EngB; Rev 99.7 1.5E-16 3.9E-21 130.5 12.5 163 4-187 17-195 (196)
97 PRK03003 engA GTP-binding prot 99.7 1.6E-16 4E-21 130.4 12.5 161 6-190 33-201 (474)
98 PRK00093 engA GTP-binding prot 99.7 2.9E-16 7.4E-21 128.7 13.1 155 13-191 3-166 (438)
99 cd04092 mtEFG2_II_like mtEFG2_ 99.7 5.1E-18 1.3E-22 140.4 4.1 82 200-285 1-83 (83)
100 PRK09518 bifunctional cytidyla 99.7 6.7E-16 1.7E-20 126.2 13.6 158 9-190 277-442 (714)
101 pfam10662 PduV-EutP Ethanolami 99.7 1.1E-16 2.9E-21 131.4 9.3 133 14-184 4-142 (143)
102 cd03691 BipA_TypA_II BipA_TypA 99.7 5E-17 1.3E-21 133.8 5.4 82 200-285 1-86 (86)
103 PRK00093 engA GTP-binding prot 99.7 2.8E-15 7.2E-20 122.0 14.3 159 9-186 170-343 (438)
104 PRK03003 engA GTP-binding prot 99.7 2.5E-15 6.3E-20 122.4 13.9 158 9-186 209-380 (474)
105 TIGR03594 GTPase_EngA ribosome 99.7 2.6E-15 6.5E-20 122.3 14.0 159 9-186 170-342 (429)
106 pfam02421 FeoB_N Ferrous iron 99.7 1.2E-15 3.2E-20 124.4 12.3 153 13-190 1-162 (188)
107 pfam00025 Arf ADP-ribosylation 99.7 1.4E-15 3.5E-20 124.2 12.2 154 11-187 14-174 (174)
108 cd04088 EFG_mtEFG_II EFG_mtEFG 99.7 4.2E-17 1.1E-21 134.3 4.4 82 200-285 1-83 (83)
109 cd04098 eEF2_C_snRNP eEF2_C_sn 99.7 1.6E-16 4E-21 130.5 7.2 76 410-486 1-78 (80)
110 cd04155 Arl3 Arl3 subfamily. 99.7 1.4E-15 3.6E-20 124.0 12.0 151 9-185 12-172 (173)
111 cd04164 trmE TrmE (MnmE, ThdF, 99.7 1.8E-15 4.7E-20 123.3 12.4 146 13-187 3-156 (157)
112 COG1160 Predicted GTPases [Gen 99.7 3.2E-15 8.1E-20 121.7 13.2 155 12-191 4-167 (444)
113 PRK09518 bifunctional cytidyla 99.6 4.1E-15 1E-19 120.9 12.7 160 8-186 449-621 (714)
114 KOG0052 consensus 99.6 3.6E-17 9.1E-22 134.8 1.9 125 11-143 7-155 (391)
115 TIGR03598 GTPase_YsxC ribosome 99.6 2.7E-15 6.8E-20 122.2 11.3 154 3-177 10-179 (179)
116 cd04091 mtEFG1_II_like mtEFG1_ 99.6 1.9E-16 4.9E-21 129.9 3.5 80 200-285 1-81 (81)
117 PRK04213 GTP-binding protein; 99.6 1.4E-14 3.7E-19 117.3 13.0 153 13-191 3-187 (195)
118 cd00878 Arf_Arl Arf (ADP-ribos 99.6 9.7E-15 2.5E-19 118.4 11.8 146 14-185 2-157 (158)
119 cd04160 Arfrp1 Arfrp1 subfamil 99.6 9.8E-15 2.5E-19 118.4 11.7 152 14-186 2-167 (167)
120 cd04154 Arl2 Arl2 subfamily. 99.6 1.2E-14 3E-19 117.8 12.0 149 11-185 14-172 (173)
121 COG1160 Predicted GTPases [Gen 99.6 1.7E-14 4.4E-19 116.8 11.1 206 10-238 177-405 (444)
122 COG1159 Era GTPase [General fu 99.6 3E-14 7.5E-19 115.2 12.3 157 12-189 7-173 (298)
123 cd01897 NOG NOG1 is a nucleola 99.6 6.6E-14 1.7E-18 112.8 13.6 152 13-187 2-167 (168)
124 cd01878 HflX HflX subfamily. 99.6 1.1E-13 2.7E-18 111.4 13.4 152 11-187 41-204 (204)
125 cd04152 Arl4_Arl7 Arl4/Arl7 su 99.6 2E-13 5E-18 109.7 14.0 156 13-189 5-171 (183)
126 cd00882 Ras_like_GTPase Ras-li 99.6 2E-13 5E-18 109.7 13.7 151 16-185 1-157 (157)
127 cd01879 FeoB Ferrous iron tran 99.6 6.5E-14 1.7E-18 112.9 11.0 147 16-187 1-156 (158)
128 pfam00071 Ras Ras family. Incl 99.5 1.7E-13 4.3E-18 110.1 12.7 155 14-187 2-160 (162)
129 cd01898 Obg Obg subfamily. Th 99.5 1.8E-13 4.5E-18 110.0 12.7 154 13-187 2-170 (170)
130 cd04159 Arl10_like Arl10-like 99.5 1.3E-13 3.4E-18 110.8 11.5 147 14-186 2-159 (159)
131 cd04153 Arl5_Arl8 Arl5/Arl8 su 99.5 3.5E-13 9E-18 107.9 13.0 150 10-185 14-173 (174)
132 COG2229 Predicted GTPase [Gene 99.5 3.3E-13 8.4E-18 108.1 12.0 167 13-190 12-181 (187)
133 cd03690 Tet_II Tet_II: This su 99.5 1.5E-14 3.7E-19 117.3 4.8 84 197-285 1-85 (85)
134 cd04157 Arl6 Arl6 subfamily. 99.5 4.5E-13 1.1E-17 107.2 12.0 149 13-185 1-161 (162)
135 PTZ00133 ADP-ribosylation fact 99.5 6.2E-13 1.6E-17 106.3 12.7 151 11-187 17-177 (182)
136 cd04150 Arf1_5_like Arf1-Arf5- 99.5 5.8E-13 1.5E-17 106.5 12.5 147 13-185 2-158 (159)
137 cd04149 Arf6 Arf6 subfamily. 99.5 2.9E-13 7.4E-18 108.5 10.9 148 12-185 10-167 (168)
138 smart00177 ARF ARF-like small 99.5 7.9E-13 2E-17 105.6 13.0 150 12-187 14-173 (175)
139 cd03689 RF3_II RF3_II: this su 99.5 1.6E-14 4.2E-19 116.9 3.9 80 202-285 1-84 (85)
140 cd04151 Arl1 Arl1 subfamily. 99.5 4.7E-13 1.2E-17 107.1 10.9 146 14-185 2-157 (158)
141 cd04156 ARLTS1 ARLTS1 subfamil 99.5 2.2E-12 5.6E-17 102.6 13.9 147 14-185 2-159 (160)
142 cd01863 Rab18 Rab18 subfamily. 99.5 1.2E-12 3.2E-17 104.3 12.3 153 14-187 3-161 (161)
143 cd00876 Ras Ras family. The R 99.5 3.7E-12 9.3E-17 101.1 14.3 154 14-187 2-160 (160)
144 cd04112 Rab26 Rab26 subfamily. 99.5 3.5E-12 9E-17 101.2 13.6 159 13-191 2-166 (191)
145 cd01860 Rab5_related Rab5-rela 99.5 4.2E-12 1.1E-16 100.7 13.8 157 13-188 3-163 (163)
146 TIGR00231 small_GTP small GTP- 99.4 3.7E-13 9.5E-18 107.8 8.1 166 10-183 2-184 (186)
147 cd04124 RabL2 RabL2 subfamily. 99.4 7.4E-12 1.9E-16 99.1 14.5 153 14-188 3-158 (161)
148 cd01867 Rab8_Rab10_Rab13_like 99.4 6.8E-12 1.7E-16 99.3 13.9 156 13-187 5-164 (167)
149 smart00175 RAB Rab subfamily o 99.4 4.8E-12 1.2E-16 100.3 13.2 156 13-187 2-161 (164)
150 cd00154 Rab Rab family. Rab G 99.4 6.1E-12 1.6E-16 99.6 13.6 151 13-185 2-159 (159)
151 cd01881 Obg_like The Obg-like 99.4 2.8E-12 7.3E-17 101.9 11.8 151 16-187 1-176 (176)
152 cd04128 Spg1 Spg1p. Spg1p (se 99.4 1.2E-11 3E-16 97.8 14.8 157 14-188 3-166 (182)
153 cd04123 Rab21 Rab21 subfamily. 99.4 3.6E-12 9.3E-17 101.2 12.1 156 13-187 2-161 (162)
154 cd04139 RalA_RalB RalA/RalB su 99.4 8.7E-12 2.2E-16 98.6 14.0 154 14-187 3-161 (164)
155 cd01893 Miro1 Miro1 subfamily. 99.4 1.2E-11 3.1E-16 97.7 14.7 157 14-190 3-166 (166)
156 cd04116 Rab9 Rab9 subfamily. 99.4 4.6E-12 1.2E-16 100.5 12.5 157 11-187 5-170 (170)
157 PTZ00132 GTP-binding nuclear p 99.4 5.3E-12 1.3E-16 100.1 12.4 154 13-187 8-164 (209)
158 cd01868 Rab11_like Rab11-like. 99.4 9.6E-12 2.4E-16 98.3 13.6 156 13-187 5-164 (165)
159 KOG0463 consensus 99.4 5.3E-13 1.4E-17 106.8 7.2 269 13-287 135-456 (641)
160 smart00173 RAS Ras subfamily o 99.4 1.2E-11 3.1E-16 97.6 14.0 150 14-187 3-161 (164)
161 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 99.4 1.1E-11 2.7E-16 98.0 13.5 156 13-187 4-163 (166)
162 cd04101 RabL4 RabL4 (Rab-like4 99.4 3E-11 7.7E-16 95.0 15.7 157 14-187 3-163 (164)
163 cd04121 Rab40 Rab40 subfamily. 99.4 1.5E-11 3.8E-16 97.0 14.2 158 11-187 6-166 (189)
164 cd04138 H_N_K_Ras_like H-Ras/N 99.4 9.6E-12 2.5E-16 98.3 13.1 151 13-187 3-161 (162)
165 cd04137 RheB Rheb (Ras Homolog 99.4 1.3E-11 3.3E-16 97.5 13.6 155 12-188 2-163 (180)
166 cd04113 Rab4 Rab4 subfamily. 99.4 1.4E-11 3.5E-16 97.3 13.7 155 14-187 3-161 (161)
167 cd04110 Rab35 Rab35 subfamily. 99.4 9.4E-12 2.4E-16 98.4 12.7 161 9-188 4-167 (199)
168 cd04147 Ras_dva Ras-dva subfam 99.4 1.3E-11 3.3E-16 97.5 13.1 158 14-190 2-165 (198)
169 cd04127 Rab27A Rab27a subfamil 99.4 2.5E-11 6.3E-16 95.6 14.5 162 12-187 5-176 (180)
170 cd04119 RJL RJL (RabJ-Like) su 99.4 3.4E-11 8.6E-16 94.6 15.2 153 14-187 3-166 (168)
171 cd04120 Rab12 Rab12 subfamily. 99.4 1.7E-11 4.3E-16 96.7 13.6 155 14-187 3-162 (202)
172 cd00877 Ran Ran (Ras-related n 99.4 2.2E-11 5.5E-16 96.0 14.0 155 14-189 3-160 (166)
173 cd04107 Rab32_Rab38 Rab38/Rab3 99.4 1.9E-11 4.8E-16 96.4 13.6 157 14-188 3-168 (201)
174 cd04158 ARD1 ARD1 subfamily. 99.4 1.2E-11 3.2E-16 97.6 12.7 149 14-188 2-161 (169)
175 cd04108 Rab36_Rab34 Rab34/Rab3 99.4 2.4E-11 6.1E-16 95.7 13.9 156 14-187 3-164 (170)
176 cd04175 Rap1 Rap1 subgroup. T 99.4 2.6E-11 6.7E-16 95.4 13.7 154 13-187 3-162 (164)
177 cd01862 Rab7 Rab7 subfamily. 99.4 3.9E-11 9.9E-16 94.3 14.5 155 14-187 3-166 (172)
178 cd04132 Rho4_like Rho4-like su 99.4 2.3E-11 5.9E-16 95.7 13.3 159 14-190 3-169 (187)
179 cd04176 Rap2 Rap2 subgroup. T 99.4 2.8E-11 7.2E-16 95.2 13.5 151 13-187 3-162 (163)
180 cd04177 RSR1 RSR1 subgroup. R 99.4 1.5E-11 3.7E-16 97.1 12.0 157 13-189 3-165 (168)
181 cd00879 Sar1 Sar1 subfamily. 99.4 2E-11 5.2E-16 96.1 12.7 152 9-186 17-189 (190)
182 cd04144 Ras2 Ras2 subfamily. 99.4 3.2E-11 8E-16 94.9 13.6 154 14-187 2-162 (190)
183 cd04145 M_R_Ras_like M-Ras/R-R 99.4 2.8E-11 7E-16 95.2 13.3 154 13-187 4-163 (164)
184 cd01866 Rab2 Rab2 subfamily. 99.4 3E-11 7.8E-16 95.0 13.1 156 13-187 6-165 (168)
185 cd04117 Rab15 Rab15 subfamily. 99.4 2.7E-11 6.9E-16 95.3 12.8 155 14-187 3-161 (161)
186 KOG1143 consensus 99.4 6.2E-12 1.6E-16 99.6 9.4 250 13-265 169-469 (591)
187 cd00157 Rho Rho (Ras homology) 99.4 4.7E-11 1.2E-15 93.7 13.8 154 13-185 2-170 (171)
188 cd04114 Rab30 Rab30 subfamily. 99.3 3.5E-11 9.1E-16 94.5 13.0 158 11-187 7-168 (169)
189 cd04125 RabA_like RabA-like su 99.3 2.8E-11 7.2E-16 95.2 12.4 153 14-187 3-161 (188)
190 cd01896 DRG The developmentall 99.3 6.4E-11 1.6E-15 92.8 13.6 147 13-187 2-225 (233)
191 cd01864 Rab19 Rab19 subfamily. 99.3 3.5E-11 9E-16 94.5 12.2 153 13-187 5-165 (165)
192 cd04140 ARHI_like ARHI subfami 99.3 3.7E-11 9.6E-16 94.3 12.3 151 13-186 3-163 (165)
193 cd04118 Rab24 Rab24 subfamily. 99.3 9.1E-11 2.3E-15 91.8 13.9 156 14-189 3-167 (193)
194 cd04122 Rab14 Rab14 subfamily. 99.3 3.6E-11 9.2E-16 94.5 11.8 156 13-187 4-163 (166)
195 cd04126 Rab20 Rab20 subfamily. 99.3 3.8E-11 9.8E-16 94.3 11.8 149 14-188 3-190 (220)
196 cd01865 Rab3 Rab3 subfamily. 99.3 5.8E-11 1.5E-15 93.1 12.7 154 13-187 3-162 (165)
197 cd01861 Rab6 Rab6 subfamily. 99.3 9.2E-11 2.3E-15 91.7 13.7 156 13-187 2-161 (161)
198 cd04136 Rap_like Rap-like subf 99.3 5.9E-11 1.5E-15 93.0 12.7 148 14-187 4-162 (163)
199 cd04106 Rab23_lke Rab23-like s 99.3 4.3E-11 1.1E-15 93.9 12.0 156 14-186 3-161 (162)
200 PRK09554 feoB ferrous iron tra 99.3 6.2E-11 1.6E-15 92.9 12.7 153 8-189 1-169 (772)
201 smart00174 RHO Rho (Ras homolo 99.3 6.9E-11 1.7E-15 92.6 12.7 157 14-190 1-174 (174)
202 cd01892 Miro2 Miro2 subfamily. 99.3 1.7E-10 4.4E-15 89.9 14.5 159 9-190 2-168 (169)
203 smart00176 RAN Ran (Ras-relate 99.3 8E-11 2E-15 92.2 12.8 150 17-187 1-153 (200)
204 cd04141 Rit_Rin_Ric Rit/Rin/Ri 99.3 6.1E-11 1.5E-15 92.9 12.0 155 13-190 4-166 (172)
205 cd04142 RRP22 RRP22 subfamily. 99.3 1.4E-10 3.6E-15 90.5 13.9 158 14-190 3-176 (198)
206 cd01870 RhoA_like RhoA-like su 99.3 2.3E-10 5.9E-15 89.0 13.5 151 13-186 3-173 (175)
207 smart00178 SAR Sar1p-like memb 99.3 2.2E-10 5.6E-15 89.2 13.1 153 9-187 15-184 (184)
208 cd04146 RERG_RasL11_like RERG/ 99.3 1.8E-10 4.5E-15 89.8 12.5 154 14-187 2-163 (165)
209 cd04134 Rho3 Rho3 subfamily. 99.3 4.1E-10 1.1E-14 87.3 14.4 160 12-190 1-176 (189)
210 COG0218 Predicted GTPase [Gene 99.3 2.1E-10 5.4E-15 89.3 12.9 165 3-188 16-197 (200)
211 cd04111 Rab39 Rab39 subfamily. 99.2 3.3E-10 8.5E-15 88.0 13.2 157 13-188 4-166 (211)
212 cd01871 Rac1_like Rac1-like su 99.2 7E-10 1.8E-14 85.8 14.7 155 14-187 4-174 (174)
213 cd04133 Rop_like Rop subfamily 99.2 4.8E-10 1.2E-14 86.9 13.8 153 14-189 4-174 (176)
214 cd04130 Wrch_1 Wrch-1 subfamil 99.2 4.4E-10 1.1E-14 87.2 13.5 151 14-184 3-170 (173)
215 cd04135 Tc10 TC10 subfamily. 99.2 5.2E-10 1.3E-14 86.7 13.8 153 13-187 2-173 (174)
216 cd04115 Rab33B_Rab33A Rab33B/R 99.2 9.2E-10 2.4E-14 85.0 15.0 158 11-187 2-168 (170)
217 cd01874 Cdc42 Cdc42 subfamily. 99.2 8.1E-10 2.1E-14 85.4 14.4 152 13-186 3-173 (175)
218 TIGR03156 GTP_HflX GTP-binding 99.2 4.5E-10 1.1E-14 87.1 12.4 151 10-187 188-351 (351)
219 cd04162 Arl9_Arfrp2_like Arl9/ 99.2 2.5E-10 6.4E-15 88.8 11.1 150 14-188 2-159 (164)
220 PRK05291 trmE tRNA modificatio 99.2 6.1E-10 1.5E-14 86.2 12.2 143 13-189 218-368 (445)
221 COG0370 FeoB Fe2+ transport sy 99.2 5.9E-10 1.5E-14 86.3 11.9 148 14-191 6-167 (653)
222 cd04148 RGK RGK subfamily. Th 99.2 1.8E-09 4.7E-14 83.0 14.2 152 13-188 2-163 (221)
223 cd04109 Rab28 Rab28 subfamily. 99.2 1.8E-09 4.6E-14 83.1 14.0 158 14-189 3-167 (215)
224 cd01875 RhoG RhoG subfamily. 99.2 2.1E-09 5.4E-14 82.6 14.0 158 13-191 5-180 (191)
225 cd04161 Arl2l1_Arl13_like Arl2 99.2 1.1E-09 2.9E-14 84.4 12.5 145 14-184 2-165 (167)
226 PRK11058 putative GTPase HflX; 99.2 3E-09 7.7E-14 81.6 14.5 156 10-190 196-364 (426)
227 cd04143 Rhes_like Rhes_like su 99.1 1.7E-09 4.2E-14 83.3 12.4 158 14-191 3-174 (247)
228 COG0486 ThdF Predicted GTPase 99.1 9.3E-10 2.4E-14 85.0 10.7 152 13-190 219-378 (454)
229 cd04129 Rho2 Rho2 subfamily. 99.1 2.3E-09 5.9E-14 82.3 12.0 154 12-190 2-175 (187)
230 PRK12299 obgE GTPase ObgE; Rev 99.1 1.2E-08 3E-13 77.5 14.0 161 8-189 155-328 (334)
231 cd04131 Rnd Rnd subfamily. Th 99.1 1.4E-08 3.5E-13 77.1 14.3 154 13-186 3-174 (178)
232 cd04105 SR_beta Signal recogni 99.0 1.2E-08 3E-13 77.6 13.5 127 13-158 2-138 (203)
233 pfam01926 MMR_HSR1 GTPase of u 99.0 3.5E-09 9E-14 81.1 10.7 98 23-139 1-106 (106)
234 pfam09439 SRPRB Signal recogni 99.0 7.8E-09 2E-13 78.8 11.8 123 12-155 4-138 (181)
235 KOG1423 consensus 99.0 8.7E-09 2.2E-13 78.5 11.9 162 8-189 69-272 (379)
236 TIGR00437 feoB ferrous iron tr 99.0 1.3E-09 3.3E-14 84.0 6.9 136 20-185 3-153 (733)
237 cd04103 Centaurin_gamma Centau 99.0 2.4E-08 6.1E-13 75.5 13.2 149 14-187 3-158 (158)
238 PTZ00099 rab6; Provisional 99.0 7E-09 1.8E-13 79.1 10.0 116 73-190 24-144 (176)
239 COG1100 GTPase SAR1 and relate 98.9 4.6E-08 1.2E-12 73.6 12.6 160 12-190 6-187 (219)
240 cd03693 EF1_alpha_II EF1_alpha 98.9 8.9E-10 2.3E-14 85.1 3.5 88 197-288 2-90 (91)
241 KOG0092 consensus 98.9 3.2E-08 8.3E-13 74.6 10.5 159 14-192 8-171 (200)
242 COG2262 HflX GTPases [General 98.9 3.8E-08 9.7E-13 74.2 10.8 154 10-189 191-357 (411)
243 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 98.9 3.6E-07 9.1E-12 67.6 15.6 159 4-187 6-187 (232)
244 COG1084 Predicted GTPase [Gene 98.9 1.1E-07 2.7E-12 71.2 12.9 153 10-186 167-334 (346)
245 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 98.9 1.7E-07 4.4E-12 69.7 14.0 153 13-185 7-177 (182)
246 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 98.9 2.3E-07 5.9E-12 68.9 14.5 147 14-185 4-173 (222)
247 KOG1489 consensus 98.8 4.4E-08 1.1E-12 73.7 10.4 157 7-185 192-364 (366)
248 TIGR02528 EutP ethanolamine ut 98.8 6E-09 1.5E-13 79.6 5.3 134 14-184 3-143 (144)
249 PRK12298 obgE GTPase ObgE; Rev 98.8 3.2E-07 8E-12 68.0 12.7 156 9-188 157-333 (380)
250 cd03700 eEF2_snRNP_like_II EF2 98.8 9.3E-09 2.4E-13 78.3 4.8 79 202-284 3-92 (93)
251 cd04102 RabL3 RabL3 (Rab-like3 98.7 8.1E-07 2.1E-11 65.3 14.2 156 14-187 3-199 (202)
252 PRK12296 obgE GTPase ObgE; Rev 98.7 3.1E-07 7.8E-12 68.1 11.9 159 8-189 156-341 (495)
253 PRK12297 obgE GTPase ObgE; Rev 98.7 4.4E-07 1.1E-11 67.0 12.5 160 8-189 155-330 (429)
254 KOG0078 consensus 98.7 1.6E-06 4.1E-11 63.2 14.8 164 1-189 4-175 (207)
255 TIGR00450 thdF tRNA modificati 98.7 4.4E-07 1.1E-11 67.1 11.6 111 13-143 227-346 (473)
256 KOG0080 consensus 98.7 2.5E-07 6.3E-12 68.7 9.9 154 12-187 12-173 (209)
257 cd04089 eRF3_II eRF3_II: domai 98.7 2.2E-08 5.6E-13 75.8 3.9 81 199-285 1-82 (82)
258 pfam08477 Miro Miro-like prote 98.6 1.1E-06 2.7E-11 64.5 12.4 111 14-141 2-118 (118)
259 cd01873 RhoBTB RhoBTB subfamil 98.6 9E-07 2.3E-11 64.9 11.8 156 13-185 4-193 (195)
260 cd03698 eRF3_II_like eRF3_II_l 98.6 3.3E-08 8.5E-13 74.6 3.8 82 199-285 1-83 (83)
261 COG1163 DRG Predicted GTPase [ 98.6 4.7E-07 1.2E-11 66.8 8.4 149 11-187 63-288 (365)
262 PRK13768 GTPase; Provisional 98.6 1.3E-06 3.3E-11 63.9 10.6 110 76-187 97-246 (253)
263 cd01342 Translation_Factor_II_ 98.5 6.1E-08 1.6E-12 72.8 3.7 81 200-285 1-83 (83)
264 pfam03308 ArgK ArgK protein. T 98.5 2.3E-07 5.8E-12 68.9 6.1 172 10-190 28-232 (267)
265 KOG0098 consensus 98.5 4.2E-06 1.1E-10 60.4 12.3 150 13-187 8-167 (216)
266 KOG0084 consensus 98.5 5.5E-06 1.4E-10 59.7 12.8 159 10-187 6-171 (205)
267 KOG0073 consensus 98.5 3.9E-06 9.9E-11 60.7 12.0 149 14-185 19-175 (185)
268 KOG0094 consensus 98.5 1.3E-05 3.4E-10 57.1 14.4 163 9-192 20-189 (221)
269 TIGR00073 hypB hydrogenase acc 98.4 5.2E-07 1.3E-11 66.5 5.9 149 13-185 36-220 (225)
270 cd03696 selB_II selB_II: this 98.4 4.1E-07 1E-11 67.2 4.6 82 200-285 1-83 (83)
271 KOG0395 consensus 98.4 2.8E-06 7.1E-11 61.6 8.6 159 11-190 3-167 (196)
272 pfam03144 GTP_EFTU_D2 Elongati 98.4 2.7E-07 6.9E-12 68.4 3.3 67 214-284 1-70 (70)
273 cd01859 MJ1464 MJ1464. This f 98.3 2.7E-06 7E-11 61.7 8.1 96 91-189 2-97 (156)
274 pfam00350 Dynamin_N Dynamin fa 98.3 8.3E-06 2.1E-10 58.5 10.3 64 77-140 100-168 (168)
275 cd01882 BMS1 Bms1. Bms1 is an 98.3 1.1E-05 2.9E-10 57.5 10.8 154 13-195 41-208 (225)
276 cd03697 EFTU_II EFTU_II: Elong 98.3 6.6E-07 1.7E-11 65.9 4.0 84 200-287 1-87 (87)
277 KOG0093 consensus 98.3 3.4E-05 8.7E-10 54.3 12.7 155 13-189 23-184 (193)
278 PRK09435 arginine/ornithine tr 98.3 2.5E-06 6.4E-11 62.0 6.5 172 11-189 49-254 (325)
279 COG3596 Predicted GTPase [Gene 98.2 2.1E-05 5.4E-10 55.8 10.1 157 13-189 41-223 (296)
280 COG4917 EutP Ethanolamine util 98.2 3E-06 7.7E-11 61.4 5.7 136 13-186 3-144 (148)
281 cd04090 eEF2_II_snRNP Loc2 eEF 98.2 1.5E-06 3.9E-11 63.4 4.2 72 202-277 3-85 (94)
282 KOG0086 consensus 98.2 7.8E-05 2E-09 51.9 12.8 158 9-189 7-176 (214)
283 pfam03029 ATP_bind_1 Conserved 98.2 5.4E-06 1.4E-10 59.7 6.9 107 77-185 91-230 (234)
284 KOG0075 consensus 98.2 5.1E-06 1.3E-10 59.9 6.5 149 14-188 23-182 (186)
285 TIGR00750 lao LAO/AO transport 98.2 6.7E-06 1.7E-10 59.1 7.2 172 12-190 39-270 (333)
286 cd01856 YlqF YlqF. Proteins o 98.2 1.1E-05 2.9E-10 57.5 8.0 100 86-190 3-103 (171)
287 KOG0095 consensus 98.2 0.00017 4.4E-09 49.6 13.7 155 11-189 7-170 (213)
288 KOG0087 consensus 98.1 5.1E-05 1.3E-09 53.2 10.6 161 7-188 10-176 (222)
289 COG1703 ArgK Putative periplas 98.1 1.2E-05 3E-10 57.5 7.2 168 13-189 53-255 (323)
290 KOG0070 consensus 98.1 1.9E-05 4.9E-10 56.0 8.2 154 9-188 15-178 (181)
291 KOG0090 consensus 98.1 1.7E-05 4.4E-10 56.3 7.9 119 12-153 39-168 (238)
292 KOG1191 consensus 98.1 6E-05 1.5E-09 52.7 10.5 14 75-88 117-130 (531)
293 KOG0088 consensus 98.1 4.7E-06 1.2E-10 60.1 4.7 156 14-188 16-175 (218)
294 KOG0394 consensus 98.1 7.2E-05 1.8E-09 52.2 10.7 161 11-189 9-179 (210)
295 pfam04670 Gtr1_RagA Gtr1/RagA 98.1 0.00015 3.8E-09 50.1 12.1 115 14-146 2-127 (230)
296 cd04104 p47_IIGP_like p47 (47- 98.1 0.0001 2.6E-09 51.1 11.0 161 13-191 3-187 (197)
297 COG0536 Obg Predicted GTPase [ 98.0 0.00011 2.9E-09 50.9 11.0 156 8-190 156-335 (369)
298 PRK10463 hydrogenase nickel in 98.0 2.5E-05 6.5E-10 55.2 7.4 154 9-184 102-285 (290)
299 KOG0076 consensus 98.0 3.4E-05 8.8E-10 54.3 7.6 154 13-190 19-189 (197)
300 KOG0071 consensus 98.0 0.00019 4.9E-09 49.3 11.0 148 14-187 20-177 (180)
301 TIGR03597 GTPase_YqeH ribosome 97.9 2.5E-05 6.3E-10 55.3 6.2 96 89-186 51-151 (360)
302 cd01850 CDC_Septin CDC/Septin. 97.9 0.00038 9.6E-09 47.4 11.9 136 13-157 6-171 (276)
303 KOG0079 consensus 97.9 0.00073 1.9E-08 45.4 12.4 163 8-189 5-170 (198)
304 KOG0097 consensus 97.8 0.00063 1.6E-08 45.9 11.9 158 1-182 1-168 (215)
305 COG0378 HypB Ni2+-binding GTPa 97.8 3E-05 7.7E-10 54.7 4.7 161 11-185 13-198 (202)
306 pfam00735 Septin Septin. Membe 97.8 0.00075 1.9E-08 45.3 11.8 122 13-144 6-155 (280)
307 cd03695 CysN_NodQ_II CysN_NodQ 97.8 2.6E-05 6.6E-10 55.1 4.3 81 200-285 1-81 (81)
308 PRK13796 GTP-binding protein Y 97.8 5.7E-05 1.4E-09 52.9 6.1 93 89-185 59-158 (367)
309 TIGR03596 GTPase_YlqF ribosome 97.8 0.0001 2.6E-09 51.1 7.3 99 86-189 5-104 (276)
310 KOG1532 consensus 97.8 2.8E-05 7.1E-10 54.9 4.2 174 13-187 21-263 (366)
311 COG5192 BMS1 GTP-binding prote 97.7 0.00058 1.5E-08 46.1 10.3 101 14-143 72-176 (1077)
312 cd01849 YlqF_related_GTPase Yl 97.7 0.00015 3.9E-09 50.0 6.7 86 103-190 1-87 (155)
313 PRK09563 rbgA ribosomal biogen 97.7 0.00017 4.4E-09 49.6 6.9 99 86-189 8-107 (282)
314 KOG4252 consensus 97.7 0.00035 8.9E-09 47.6 8.5 168 1-188 10-181 (246)
315 COG5019 CDC3 Septin family pro 97.6 0.0013 3.3E-08 43.8 10.9 136 13-158 25-191 (373)
316 cd03694 GTPBP_II Domain II of 97.6 6.7E-05 1.7E-09 52.4 3.9 82 202-284 3-86 (87)
317 PRK12288 ribosome-associated G 97.6 0.00021 5.4E-09 49.0 6.2 84 98-186 118-208 (344)
318 cd02036 MinD Bacterial cell di 97.5 0.00067 1.7E-08 45.6 8.4 132 14-161 2-145 (179)
319 KOG0410 consensus 97.5 0.0012 3.1E-08 43.9 9.6 147 13-190 180-343 (410)
320 PRK00098 ribosome-associated G 97.5 0.00041 1.1E-08 47.1 6.9 86 97-184 75-163 (298)
321 KOG0072 consensus 97.4 0.00076 1.9E-08 45.3 7.0 108 76-187 60-178 (182)
322 COG1162 Predicted GTPases [Gen 97.4 0.00058 1.5E-08 46.1 6.2 84 102-186 80-165 (301)
323 PRK12289 ribosome-associated G 97.4 0.00041 1.1E-08 47.1 5.3 86 99-187 86-173 (351)
324 cd01854 YjeQ_engC YjeQ/EngC. 97.3 0.00048 1.2E-08 46.6 5.6 83 98-183 74-159 (287)
325 PRK01889 ribosome-associated G 97.3 0.00071 1.8E-08 45.5 6.4 80 102-184 112-192 (353)
326 cd01858 NGP_1 NGP-1. Autoanti 97.3 0.00086 2.2E-08 44.9 6.5 91 94-187 1-94 (157)
327 TIGR00436 era GTP-binding prot 97.2 0.0024 6.1E-08 41.9 8.1 156 14-189 3-171 (278)
328 cd01855 YqeH YqeH. YqeH is an 97.2 0.00052 1.3E-08 46.4 4.5 97 90-188 22-125 (190)
329 TIGR02729 Obg_CgtA GTP-binding 97.2 0.0096 2.5E-07 37.9 10.6 112 8-144 155-296 (296)
330 KOG1547 consensus 97.1 0.0008 2E-08 45.1 5.0 120 13-143 48-197 (336)
331 KOG1707 consensus 97.1 0.016 4E-07 36.4 11.6 148 9-182 8-169 (625)
332 KOG2486 consensus 97.1 0.0062 1.6E-07 39.2 9.3 157 6-184 131-312 (320)
333 KOG0083 consensus 97.0 0.0012 2.9E-08 44.1 4.9 177 16-218 2-188 (192)
334 PRK05306 infB translation init 97.0 0.024 6.2E-07 35.2 11.1 63 414-476 666-738 (839)
335 PRK11537 putative GTP-binding 96.9 0.01 2.6E-07 37.7 8.7 136 15-156 8-175 (317)
336 pfam04548 AIG1 AIG1 family. Ar 96.9 0.04 1E-06 33.7 11.6 150 13-187 2-173 (200)
337 PRK01889 ribosome-associated G 96.8 0.0018 4.6E-08 42.8 4.3 11 173-183 204-214 (353)
338 cd01857 HSR1_MMR1 HSR1/MMR1. 96.8 0.0056 1.4E-07 39.5 6.8 52 93-144 3-56 (141)
339 smart00053 DYNc Dynamin, GTPas 96.8 0.033 8.3E-07 34.3 10.6 130 12-145 27-207 (240)
340 cd01849 YlqF_related_GTPase Yl 96.8 0.0025 6.4E-08 41.8 4.9 55 11-87 100-154 (155)
341 PRK12312 infB translation init 96.8 0.041 1E-06 33.7 11.1 73 415-487 439-521 (610)
342 KOG2655 consensus 96.8 0.0043 1.1E-07 40.3 6.1 135 13-157 23-186 (366)
343 CHL00189 infB translation init 96.7 0.034 8.6E-07 34.3 10.3 21 364-384 494-514 (770)
344 KOG0091 consensus 96.6 0.034 8.6E-07 34.2 9.6 152 15-187 12-172 (213)
345 cd03110 Fer4_NifH_child This p 96.6 0.011 2.7E-07 37.6 7.0 69 74-144 89-157 (179)
346 cd01854 YjeQ_engC YjeQ/EngC. 96.6 0.0046 1.2E-07 40.0 5.1 93 82-184 84-182 (287)
347 pfam03193 DUF258 Protein of un 96.5 0.0022 5.6E-08 42.2 3.2 60 12-92 36-101 (161)
348 cd01859 MJ1464 MJ1464. This f 96.5 0.0064 1.6E-07 39.1 5.3 21 12-32 102-122 (156)
349 pfam05049 IIGP Interferon-indu 96.5 0.08 2E-06 31.7 10.9 159 12-191 36-221 (375)
350 cd01853 Toc34_like Toc34-like 96.5 0.042 1.1E-06 33.6 9.4 117 9-162 29-148 (249)
351 KOG1490 consensus 96.5 0.025 6.5E-07 35.1 8.2 159 9-187 166-340 (620)
352 KOG0096 consensus 96.3 0.011 2.7E-07 37.6 5.8 147 11-178 10-159 (216)
353 KOG0074 consensus 96.3 0.033 8.4E-07 34.3 8.3 151 10-186 17-177 (185)
354 PRK00098 ribosome-associated G 96.3 0.0071 1.8E-07 38.8 4.8 31 151-184 155-185 (298)
355 pfam07015 VirC1 VirC1 protein. 96.2 0.024 6E-07 35.3 6.8 134 18-158 9-166 (231)
356 cd01852 AIG1 AIG1 (avrRpt2-ind 96.2 0.033 8.3E-07 34.3 7.5 83 13-113 2-95 (196)
357 KOG0705 consensus 96.1 0.011 2.7E-07 37.6 4.9 89 13-128 32-122 (749)
358 cd03114 ArgK-like The function 96.1 0.0086 2.2E-07 38.2 4.3 121 14-141 2-148 (148)
359 PRK10751 molybdopterin-guanine 96.1 0.032 8.3E-07 34.4 7.0 50 13-91 4-53 (170)
360 cd03116 MobB Molybdenum is an 96.0 0.045 1.1E-06 33.4 7.6 51 12-91 2-52 (159)
361 KOG0077 consensus 96.0 0.079 2E-06 31.7 8.9 78 79-159 65-147 (193)
362 cd01858 NGP_1 NGP-1. Autoanti 96.0 0.012 3.1E-07 37.2 4.7 20 13-32 104-123 (157)
363 PHA02518 ParA-like protein; Pr 96.0 0.034 8.6E-07 34.2 7.0 78 77-156 76-159 (211)
364 TIGR03348 VI_IcmF type VI secr 95.9 0.048 1.2E-06 33.2 7.4 113 14-143 114-256 (1169)
365 COG0523 Putative GTPases (G3E 95.9 0.055 1.4E-06 32.8 7.7 157 15-182 5-195 (323)
366 PRK09601 translation-associate 95.9 0.13 3.3E-06 30.3 9.6 89 13-115 4-110 (364)
367 cd01856 YlqF YlqF. Proteins o 95.8 0.021 5.3E-07 35.7 5.3 20 13-32 117-136 (171)
368 TIGR00176 mobB molybdopterin-g 95.8 0.02 5.1E-07 35.8 5.2 50 14-89 2-51 (165)
369 TIGR03597 GTPase_YqeH ribosome 95.8 0.021 5.4E-07 35.6 5.2 100 78-186 69-177 (360)
370 pfam05783 DLIC Dynein light in 95.8 0.066 1.7E-06 32.3 7.6 59 129-187 214-282 (490)
371 pfam02492 cobW CobW/HypB/UreG, 95.7 0.098 2.5E-06 31.1 8.4 135 16-156 5-165 (174)
372 COG1162 Predicted GTPases [Gen 95.7 0.013 3.3E-07 37.0 3.8 13 171-183 172-184 (301)
373 PRK13849 putative crown gall t 95.7 0.032 8.1E-07 34.4 5.7 79 76-158 82-166 (231)
374 COG1763 MobB Molybdopterin-gua 95.6 0.027 6.8E-07 34.9 5.2 51 12-91 3-53 (161)
375 cd01857 HSR1_MMR1 HSR1/MMR1. 95.6 0.021 5.4E-07 35.6 4.6 58 9-88 81-138 (141)
376 KOG0081 consensus 95.6 0.099 2.5E-06 31.1 8.1 158 14-189 12-186 (219)
377 PRK12289 ribosome-associated G 95.6 0.021 5.3E-07 35.6 4.4 56 198-259 7-62 (351)
378 PRK13796 GTP-binding protein Y 95.5 0.033 8.4E-07 34.3 5.3 100 78-187 77-186 (367)
379 pfam01656 CbiA CobQ/CobB/MinD/ 95.5 0.041 1.1E-06 33.6 5.8 69 76-146 111-180 (212)
380 cd03692 mtIF2_IVc mtIF2_IVc: t 95.5 0.021 5.3E-07 35.6 4.1 75 206-283 7-82 (84)
381 cd02042 ParA ParA and ParB of 95.4 0.024 6.2E-07 35.2 4.4 66 19-113 8-73 (104)
382 PRK13760 putative RNA-associat 95.3 0.07 1.8E-06 32.1 6.5 64 413-478 164-228 (233)
383 COG1161 Predicted GTPases [Gen 95.3 0.038 9.6E-07 33.9 5.0 98 82-184 14-113 (322)
384 cd01855 YqeH YqeH. YqeH is an 95.2 0.017 4.4E-07 36.2 3.1 103 78-187 40-151 (190)
385 KOG1954 consensus 95.2 0.22 5.5E-06 28.8 8.5 128 13-143 60-224 (532)
386 PRK00131 aroK shikimate kinase 95.1 0.086 2.2E-06 31.5 6.4 145 9-187 2-169 (175)
387 cd03702 IF2_mtIF2_II This fami 95.1 0.035 9E-07 34.1 4.4 80 201-287 2-81 (95)
388 TIGR00491 aIF-2 translation in 95.0 0.02 5E-07 35.8 2.9 52 408-459 691-747 (1145)
389 KOG0448 consensus 95.0 0.3 7.7E-06 27.9 9.7 155 13-172 111-310 (749)
390 cd03278 ABC_SMC_barmotin Barmo 94.9 0.26 6.7E-06 28.2 8.4 24 14-37 25-48 (197)
391 PRK06731 flhF flagellar biosyn 94.7 0.23 6E-06 28.6 7.6 129 7-142 71-223 (270)
392 cd02037 MRP-like MRP (Multiple 94.5 0.17 4.3E-06 29.6 6.6 117 18-139 7-130 (169)
393 cd03115 SRP The signal recogni 94.5 0.4 1E-05 27.0 11.0 123 14-142 3-151 (173)
394 COG0419 SbcC ATPase involved i 94.4 0.069 1.8E-06 32.1 4.5 61 14-82 28-89 (908)
395 TIGR03371 cellulose_yhjQ cellu 94.4 0.11 2.8E-06 30.8 5.5 80 78-159 115-197 (246)
396 PRK13948 shikimate kinase; Pro 94.3 0.43 1.1E-05 26.8 8.3 154 1-189 1-175 (182)
397 TIGR00959 ffh signal recogniti 94.3 0.2 5.1E-06 29.0 6.6 123 13-143 104-260 (439)
398 PRK12727 flagellar biosynthesi 94.3 0.45 1.2E-05 26.7 9.6 12 178-189 307-318 (557)
399 cd01899 Ygr210 Ygr210 subfamil 94.2 0.47 1.2E-05 26.6 11.4 121 14-155 1-139 (318)
400 KOG1487 consensus 94.2 0.076 1.9E-06 31.9 4.3 169 13-232 61-241 (358)
401 PRK09563 rbgA ribosomal biogen 94.2 0.093 2.4E-06 31.3 4.7 24 105-128 54-77 (282)
402 cd04178 Nucleostemin_like Nucl 94.1 0.15 3.8E-06 29.9 5.6 42 103-144 1-44 (172)
403 COG0532 InfB Translation initi 94.1 0.079 2E-06 31.7 4.2 15 461-475 464-478 (509)
404 COG1149 MinD superfamily P-loo 94.0 0.25 6.4E-06 28.4 6.6 56 299-378 192-248 (284)
405 TIGR03596 GTPase_YlqF ribosome 93.9 0.15 3.7E-06 30.0 5.2 18 14-31 121-138 (276)
406 KOG1673 consensus 93.8 0.44 1.1E-05 26.8 7.5 153 13-187 22-185 (205)
407 TIGR01184 ntrCD nitrate ABC tr 93.8 0.041 1.1E-06 33.7 2.2 28 13-44 13-40 (230)
408 cd03701 IF2_IF5B_II IF2_IF5B_I 93.7 0.1 2.7E-06 30.9 4.2 77 201-284 2-78 (95)
409 PRK11568 hypothetical protein; 93.7 0.46 1.2E-05 26.6 7.5 69 409-479 133-201 (204)
410 COG0012 Predicted GTPase, prob 93.6 0.6 1.5E-05 25.9 11.7 113 13-155 4-134 (372)
411 KOG3883 consensus 93.5 0.61 1.6E-05 25.8 11.1 166 8-192 6-179 (198)
412 PRK05057 aroK shikimate kinase 93.5 0.11 2.8E-06 30.8 4.0 46 8-61 1-47 (172)
413 COG1120 FepC ABC-type cobalami 93.5 0.31 7.8E-06 27.8 6.3 126 13-148 30-170 (258)
414 cd01983 Fer4_NifH The Fer4_Nif 93.5 0.26 6.5E-06 28.3 5.9 75 14-120 2-77 (99)
415 KOG3886 consensus 93.4 0.35 8.9E-06 27.4 6.5 123 10-151 3-137 (295)
416 COG1161 Predicted GTPases [Gen 93.2 0.21 5.3E-06 28.9 5.1 19 14-32 135-153 (322)
417 KOG3887 consensus 93.1 0.12 3.1E-06 30.5 3.8 114 11-144 28-149 (347)
418 cd03246 ABCC_Protease_Secretio 93.1 0.57 1.5E-05 26.0 7.2 100 12-127 29-139 (173)
419 TIGR02782 TrbB_P P-type conjug 92.9 0.08 2E-06 31.7 2.6 22 166-187 142-163 (315)
420 pfam06431 Polyoma_lg_T_C Polyo 92.8 0.12 3.1E-06 30.5 3.3 18 145-162 99-116 (417)
421 pfam09547 Spore_IV_A Stage IV 92.5 0.86 2.2E-05 24.8 9.9 169 13-189 19-238 (492)
422 PRK08118 topology modulation p 92.4 0.13 3.3E-06 30.4 3.1 26 12-37 2-27 (167)
423 TIGR01007 eps_fam capsular exo 92.3 0.53 1.3E-05 26.2 6.2 58 80-144 133-197 (207)
424 COG1135 AbcC ABC-type metal io 92.1 0.41 1E-05 27.0 5.4 34 347-380 266-299 (339)
425 pfam04295 GD_AH_C D-galactarat 92.0 0.33 8.3E-06 27.6 4.8 45 95-141 69-119 (393)
426 PRK07261 topology modulation p 91.6 0.18 4.6E-06 29.3 3.1 24 14-37 3-26 (171)
427 KOG0393 consensus 91.5 0.71 1.8E-05 25.4 6.1 155 12-189 5-180 (198)
428 cd03112 CobW_like The function 91.4 1.1 2.9E-05 24.0 7.0 121 16-142 5-158 (158)
429 pfam00448 SRP54 SRP54-type pro 91.3 1.2 2.9E-05 23.9 11.0 154 13-179 3-182 (196)
430 CHL00175 minD septum-site dete 91.3 0.84 2.1E-05 24.9 6.2 64 76-141 123-187 (279)
431 PRK10246 exonuclease subunit S 91.2 0.68 1.7E-05 25.5 5.7 27 13-39 32-59 (1047)
432 TIGR02211 LolD_lipo_ex lipopro 90.9 0.18 4.7E-06 29.3 2.6 29 13-45 33-61 (221)
433 PRK13947 shikimate kinase; Pro 90.8 0.37 9.5E-06 27.2 4.1 143 11-187 1-165 (171)
434 PRK05703 flhF flagellar biosyn 90.8 1.3 3.3E-05 23.6 10.3 14 317-330 277-290 (412)
435 cd03288 ABCC_SUR2 The SUR doma 90.8 1.1 2.8E-05 24.1 6.4 123 12-150 48-190 (257)
436 cd03369 ABCC_NFT1 Domain 2 of 90.8 1.3 3.3E-05 23.6 9.3 127 13-158 36-168 (207)
437 TIGR01842 type_I_sec_PrtD type 90.7 0.23 5.8E-06 28.7 2.9 70 310-390 466-543 (556)
438 cd03226 ABC_cobalt_CbiO_domain 90.7 0.46 1.2E-05 26.7 4.4 24 14-40 29-52 (205)
439 PRK13631 cbiO cobalt transport 90.6 0.31 7.8E-06 27.8 3.5 25 13-40 54-78 (320)
440 cd03229 ABC_Class3 This class 90.4 0.75 1.9E-05 25.2 5.3 24 13-39 28-51 (178)
441 PRK06995 flhF flagellar biosyn 90.3 1.4 3.7E-05 23.3 9.5 12 317-328 243-254 (404)
442 TIGR02324 CP_lyasePhnL phospho 90.2 0.23 5.9E-06 28.6 2.6 23 14-37 37-59 (224)
443 COG0563 Adk Adenylate kinase a 90.2 0.35 8.8E-06 27.4 3.4 108 12-138 1-112 (178)
444 PRK06547 hypothetical protein; 90.1 0.27 6.9E-06 28.2 2.9 25 10-34 14-38 (184)
445 KOG3022 consensus 89.9 1.2 3E-05 23.9 6.0 26 6-31 41-68 (300)
446 TIGR02673 FtsE cell division A 89.8 0.23 5.7E-06 28.7 2.2 20 16-36 33-52 (215)
447 COG1428 Deoxynucleoside kinase 89.7 0.29 7.4E-06 28.0 2.8 46 12-57 5-52 (216)
448 PRK11247 ssuB aliphatic sulfon 89.3 0.97 2.5E-05 24.5 5.2 38 13-54 40-77 (257)
449 COG1134 TagH ABC-type polysacc 89.2 0.39 1E-05 27.1 3.1 25 13-40 55-79 (249)
450 cd03240 ABC_Rad50 The catalyti 89.1 0.85 2.2E-05 24.8 4.8 20 14-33 25-44 (204)
451 COG1116 TauB ABC-type nitrate/ 89.1 0.38 9.8E-06 27.1 3.0 36 14-53 32-67 (248)
452 PRK13548 hmuV hemin importer A 89.1 0.59 1.5E-05 25.9 3.9 25 13-40 30-54 (257)
453 cd02023 UMPK Uridine monophosp 88.9 0.46 1.2E-05 26.6 3.3 23 14-36 2-24 (198)
454 pfam00485 PRK Phosphoribulokin 88.9 0.41 1E-05 27.0 3.0 23 14-36 2-24 (196)
455 PRK13946 shikimate kinase; Pro 88.9 0.63 1.6E-05 25.7 4.0 99 10-137 19-119 (195)
456 cd03253 ABCC_ATM1_transporter 88.9 0.32 8.1E-06 27.7 2.4 52 13-68 29-86 (236)
457 KOG0780 consensus 88.8 1.5 3.9E-05 23.1 5.9 127 11-142 100-252 (483)
458 PRK13949 shikimate kinase; Pro 88.8 1.2 3.1E-05 23.8 5.4 96 12-138 2-101 (169)
459 COG4963 CpaE Flp pilus assembl 88.8 1.8 4.7E-05 22.6 7.6 18 353-370 203-220 (366)
460 PRK09866 hypothetical protein; 88.6 0.37 9.5E-06 27.2 2.7 95 79-174 231-339 (742)
461 TIGR02857 CydD ABC transporter 88.6 0.38 9.6E-06 27.2 2.7 19 14-32 381-399 (570)
462 cd03228 ABCC_MRP_Like The MRP 88.5 1.9 4.8E-05 22.5 7.8 25 12-39 29-53 (171)
463 cd03279 ABC_sbcCD SbcCD and ot 88.4 1.4 3.6E-05 23.4 5.5 69 13-91 30-99 (213)
464 cd00464 SK Shikimate kinase (S 88.4 1.3 3.2E-05 23.7 5.3 94 13-137 1-98 (154)
465 PRK13644 cbiO cobalt transport 88.3 0.46 1.2E-05 26.6 3.0 25 13-40 30-54 (274)
466 PRK03731 aroL shikimate kinase 88.2 0.78 2E-05 25.1 4.1 97 12-137 3-100 (172)
467 COG4962 CpaF Flp pilus assembl 88.1 0.37 9.5E-06 27.2 2.4 25 166-190 176-200 (355)
468 cd02030 NDUO42 NADH:Ubiquinone 88.0 0.53 1.3E-05 26.2 3.1 24 14-37 2-25 (219)
469 cd03218 ABC_YhbG The ABC trans 87.9 0.7 1.8E-05 25.4 3.7 25 13-40 28-52 (232)
470 cd03252 ABCC_Hemolysin The ABC 87.9 0.42 1.1E-05 26.9 2.6 122 13-149 30-171 (237)
471 PRK13651 cobalt transporter AT 87.8 0.44 1.1E-05 26.8 2.6 25 13-40 35-59 (304)
472 PRK05480 uridine kinase; Provi 87.7 0.59 1.5E-05 25.9 3.2 24 13-36 8-31 (209)
473 cd03296 ABC_CysA_sulfate_impor 87.6 0.56 1.4E-05 26.1 3.1 20 12-31 29-48 (239)
474 pfam00931 NB-ARC NB-ARC domain 87.6 0.49 1.3E-05 26.4 2.8 24 9-32 17-40 (285)
475 cd03249 ABC_MTABC3_MDL1_MDL2 M 87.5 0.48 1.2E-05 26.5 2.7 53 13-68 31-88 (238)
476 COG0541 Ffh Signal recognition 87.5 2.2 5.6E-05 22.1 9.4 61 79-143 184-252 (451)
477 PRK13650 cbiO cobalt transport 87.5 1.1 2.9E-05 24.0 4.5 24 13-39 32-55 (276)
478 PRK13643 cbiO cobalt transport 87.4 0.64 1.6E-05 25.7 3.2 25 13-40 34-58 (288)
479 KOG0467 consensus 87.3 0.0057 1.5E-07 39.4 -7.3 36 83-119 252-287 (887)
480 COG2721 UxaA Altronate dehydra 87.2 0.77 2E-05 25.1 3.6 24 11-34 19-42 (381)
481 cd02038 FleN-like FleN is a me 87.2 2.3 5.8E-05 22.0 9.0 101 14-142 2-109 (139)
482 PRK13540 cytochrome c biogenes 87.2 1 2.7E-05 24.2 4.2 25 13-40 29-53 (200)
483 PRK10762 D-ribose transporter 87.1 0.81 2.1E-05 25.0 3.6 53 13-68 32-90 (501)
484 cd01130 VirB11-like_ATPase Typ 87.0 0.57 1.5E-05 26.0 2.8 26 9-34 23-48 (186)
485 COG1121 ZnuC ABC-type Mn/Zn tr 87.0 2.3 6E-05 21.9 7.8 135 14-158 33-182 (254)
486 TIGR00618 sbcc exonuclease Sbc 86.9 0.59 1.5E-05 25.9 2.8 34 7-40 26-61 (1063)
487 PRK13646 cbiO cobalt transport 86.9 0.52 1.3E-05 26.3 2.5 25 13-40 35-59 (286)
488 pfam06564 YhjQ YhjQ protein. T 86.9 2.1 5.4E-05 22.2 5.7 58 77-142 117-175 (244)
489 TIGR01526 nadR_NMN_Atrans nico 86.9 0.48 1.2E-05 26.5 2.4 66 303-373 262-335 (346)
490 cd02028 UMPK_like Uridine mono 86.8 0.63 1.6E-05 25.7 2.9 23 14-36 2-24 (179)
491 PRK13900 type IV secretion sys 86.8 0.61 1.6E-05 25.8 2.9 26 165-190 162-187 (332)
492 TIGR01846 type_I_sec_HlyB type 86.8 0.9 2.3E-05 24.7 3.7 26 207-239 387-413 (703)
493 cd03289 ABCC_CFTR2 The CFTR su 86.7 0.59 1.5E-05 25.9 2.8 22 13-34 32-53 (275)
494 TIGR00956 3a01205 Pleiotropic 86.7 0.32 8.2E-06 27.7 1.4 19 15-33 857-875 (1466)
495 cd03291 ABCC_CFTR1 The CFTR su 86.6 0.57 1.4E-05 26.0 2.6 16 14-29 66-81 (282)
496 cd03259 ABC_Carb_Solutes_like 86.5 0.69 1.8E-05 25.4 3.0 24 13-39 28-51 (213)
497 TIGR02315 ABC_phnC phosphonate 86.5 0.81 2.1E-05 25.0 3.3 116 14-145 31-184 (253)
498 COG1192 Soj ATPases involved i 86.5 2.3 5.8E-05 22.0 5.6 82 76-159 118-206 (259)
499 cd03295 ABC_OpuCA_Osmoprotecti 86.5 0.95 2.4E-05 24.5 3.7 53 14-69 30-87 (242)
500 cd03290 ABCC_SUR1_N The SUR do 86.4 0.59 1.5E-05 25.9 2.6 19 14-32 30-48 (218)
No 1
>TIGR01393 lepA GTP-binding protein LepA; InterPro: IPR006297 LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function of the proteins in this family are unknown. ; GO: 0005525 GTP binding.
Probab=100.00 E-value=0 Score=2101.66 Aligned_cols=594 Identities=63% Similarity=1.066 Sum_probs=589.9
Q ss_pred HHCEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHCCEEEEEEEEEEEE-CCCCCEEEEEEEECCC
Q ss_conf 253179998013898778899999982980544443113058677987195052327999974-3788438999961787
Q gi|254780321|r 9 SRIRNFSIVAHIDHGKSTLADRFIQHCRGLTEREMSSQVLDNMDIERERGITIKAQTVRLNYT-STDAKDYQLNLIDTPG 87 (606)
Q Consensus 9 ~~IRN~~IiaHvDhGKTTL~d~lL~~tg~i~~~~~~~~vlD~~~~EreRGITIka~~~~~~~~-~~~~~~y~iNlIDTPG 87 (606)
++||||||||||||||||||||||+.||++++|++.+|+||+||+|||||||||||+|+|.|+ ..+|++|.||||||||
T Consensus 1 ~~IRNFsIIAHIDHGKSTLADRlle~T~~~s~R~m~~Q~LD~MDlERERGITIK~qaV~l~Yk~~~DGe~Y~LNLIDTPG 80 (598)
T TIGR01393 1 KNIRNFSIIAHIDHGKSTLADRLLEKTGAVSEREMREQVLDSMDLERERGITIKAQAVRLKYKVAKDGETYVLNLIDTPG 80 (598)
T ss_pred CCCCCEEEEEEECCCCCHHHHHHHHHCCCCCCHHHHHCCCCCCCEEECCCCEEECCCEEEEEEEECCCCEEEEEEECCCC
T ss_conf 98752678846248932488999986174562025430577510000058201156347533753388788996452889
Q ss_pred CCHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 30027999999973026899998687886558999999997099679983267887532113388877555322321000
Q gi|254780321|r 88 HVDFTYEVSRSLSACEGSLLVVDATQGVEAQTLANVYQAIDNNHEIITVLNKADLPSADPDRVKKQIEETIGISTEDALL 167 (606)
Q Consensus 88 H~DF~~EV~r~l~a~dgaiLvVdA~~Gvq~QT~~~~~~A~~~~l~~I~viNKiD~~~A~~e~v~~ei~~~~g~~~~~ii~ 167 (606)
||||+|||||||+|||||||||||+|||||||++|+|+|+|++|+|||||||||||+||||+|++||+|++|+|++|++.
T Consensus 81 HVDFsYEVSRSLAACEGALL~VDA~QGvEAQT~aN~YlAlE~dLeIIPViNKIDLP~Adpe~v~~eIe~~iGld~~~ai~ 160 (598)
T TIGR01393 81 HVDFSYEVSRSLAACEGALLLVDAAQGVEAQTLANVYLALENDLEIIPVINKIDLPSADPERVKKEIEEVIGLDASEAIL 160 (598)
T ss_pred CCCCCHHHHHHHHHHCCEEEEEECCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCHHHHHHHHHHHCCCCCCCCEE
T ss_conf 72127378888887164035614103235888999988756187584778253688888589999876541889643038
Q ss_pred HHHHCCCCCCHHHHHHHHHHHCCCCHHHHH-CCCCCCCCCEEECCCCCEEEEEEECCCCCCCCCEEEEECCCCCCCCCCC
Q ss_conf 111002232006787763210001111220-1233101210114757259999816987355845887335564210122
Q gi|254780321|r 168 VSAKTGEGIPLLLERIVQQLPSPTSPEGAN-APLKALLIDSWYNSYLGVMVLVRIINGQLTKGQSIRLMGTNAKYQVERI 246 (606)
Q Consensus 168 vSAktG~GV~~LLd~Iv~~iP~P~~~~~~~-~Pl~alVfds~~D~~~G~I~~~RV~sG~lk~Gd~I~~~~~g~~~~v~~i 246 (606)
||||||+||++|||+||+++|||++ +++ +||||||||||||+|+|+|+|+||++|++++||+|++|+||++|+|.++
T Consensus 161 ~SAKtG~Gi~e~LEaIv~~vPpP~G--d~~DapLkALIFDS~YD~YrGVv~~vRv~~G~ik~gD~I~~Mstgk~y~V~ev 238 (598)
T TIGR01393 161 ASAKTGIGIEEILEAIVKRVPPPKG--DPDDAPLKALIFDSHYDNYRGVVVLVRVFEGTIKKGDKIRFMSTGKEYEVDEV 238 (598)
T ss_pred EEECCCCCHHHHHHHHHHCCCCCCC--CCCCCCCEEEEEEEEECCCCEEEEEEEEEECEECCCCEEEEEECCCEEEEEEE
T ss_conf 7503678889998897101810011--38886632278843543865089999995268646988999534876667550
Q ss_pred CCCCCCE-EEEHHCCCCCHHHHHHCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHH
Q ss_conf 2335541-240101247123322011002444454200046678532364552222126642126770245788999988
Q gi|254780321|r 247 GILTPKM-IDIEALYPGEIGVMIASIKEVSHTRVGDTITDDSSPTTSALPGFKPIQPVVFCGLFPVDATQFENLRTAINK 325 (606)
Q Consensus 247 g~~~~~~-~~v~~l~aGdVG~ii~gik~l~~~~vGDTl~~~~~p~~~~Lp~~~~~~P~v~~~i~p~~~~d~~~L~~aL~k 325 (606)
|+|.|+. .+.++|.||||||++||||+++|++||||||+.++|+.+|||||++++||||+|+||+++++|+.|++||+|
T Consensus 239 G~~~P~~~~~~~~L~aGeVGy~~AgIK~v~D~~VGDTiT~~~~Pa~eplpGF~~~KP~VFaGlYPid~~~Ye~LrdALeK 318 (598)
T TIGR01393 239 GVFTPKLEVKTQELSAGEVGYIIAGIKDVSDVKVGDTITSVKNPAKEPLPGFKEVKPMVFAGLYPIDTEDYEDLRDALEK 318 (598)
T ss_pred EEECCCCCCCCCCEECCCEEEEEEEEEECCCEECCCEEECCCCCCCCCCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHH
T ss_conf 03434520146620016305999865310411205445256787376788861257658601258880346899999755
Q ss_pred HHHHCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHHHCCCEEEEECCCCCEEEEEECCCEEECCCHHHCCCHHHH
Q ss_conf 86411221112567600042028996376789888988866449506973782330335315645412696662586778
Q gi|254780321|r 326 LRLNDASFSFELENSTALGFGFRCGFLGLLHLEIIQERLEREFSLNLIGTSPSVVYELYMHDGSMQKLSNPIDMPEVTKI 405 (606)
Q Consensus 326 L~~~D~sl~~e~Ets~aLg~Gfr~gglG~LHLeVi~eRL~rEfg~ev~~t~P~V~Ykv~~~dG~~~~Vd~p~~~p~~~~i 405 (606)
|+|||+||+||+|||.||||||||||||+|||||++|||+||||+++|+|+|+|.|||.++||+...|+||++||+.+.|
T Consensus 319 L~LNDAsL~yE~E~S~ALGFGFRCGFLGLLHmEiiqERLeREFnldlI~TAP~V~Y~V~~~~G~~~~v~nP~~~P~~~~I 398 (598)
T TIGR01393 319 LKLNDASLTYEPESSPALGFGFRCGFLGLLHMEIIQERLEREFNLDLITTAPSVVYKVYLTDGEVIEVDNPSDLPDPNKI 398 (598)
T ss_pred HHHHHHHHHCCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHCCCEEEEECCCEEEEEEEECCCEEEEECCHHCCCCCCC
T ss_conf 54402542102236300374043326663368999876544308706872781599999707818997183006850157
Q ss_pred HHHHCCEEEEEEEECCCCCHHHHHHHHHHHHEEECCCCCC-CEEEEEEEECHHHHHHHHHHHHHHHCCCEEEEEEEECCC
Q ss_conf 8862326999998083100038999886300142443368-369999996043332204687676357418889854354
Q gi|254780321|r 406 AELREPWIQVTIITPNEYLGSILKLCQERRGIQIDMSHLD-NRAMIVYELPLNEVIFDFYDRLKSVSKGYASFDYNVIDY 484 (606)
Q Consensus 406 ~~i~EPi~~~~I~~P~ey~G~Vm~~l~~RRG~~~~m~~~~-~~~~i~~~vPl~Eli~~f~~~LkS~T~G~as~~ye~~~Y 484 (606)
.+++|||++++|++|+||+|+||+||++|||.+.+|+|+| +||.|.|+|||+|||+||||+|||+|+|||||||||.+|
T Consensus 399 ~~v~EPyv~~~IitP~ey~G~iM~LC~~KRG~~~~~~Y~d~~RV~L~YemPL~EI~~DFfDkLKS~skGYASfDYE~~~y 478 (598)
T TIGR01393 399 EHVEEPYVKATIITPSEYLGAIMELCQEKRGVQTNMEYLDPNRVELIYEMPLAEIVYDFFDKLKSISKGYASFDYELIGY 478 (598)
T ss_pred CEEECCEEEEEEECCCCHHHHHHHHHHHCCEEEEEEEECCCCEEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCC
T ss_conf 77844749999435830124688876301514634363189559999975753063301063202223532112321357
Q ss_pred EECCEEEEEEEECCCCCCEEEEEEEHHHHHHHHHHHHHHHHHCCCHHHCCCCCEEEECCEEEEEECCCCCCCCEEEEECC
Q ss_conf 64366797488628824356874215779999999999987408701020022045647889741256420320323017
Q gi|254780321|r 485 RDSDLVKLTILVNNETIDALSILVHRSVSEKRGRGICEKLKNLIPQQMFQIAIQAAIGGRIIARETVKARRKDVTAKCYG 564 (606)
Q Consensus 485 ~~~dlvk~~ilin~~~vdals~i~h~~~a~~~gr~~~~~L~~~iprq~F~v~iqa~~~~~iiare~i~~~rkdvt~kcyg 564 (606)
|++||||+|||||||+|||||+||||++|+.+||.+|+||||+||||||+|||||+||+||||||||||+||||||||||
T Consensus 479 r~~dLVKlDIL~Nge~VDALS~IVH~d~A~~~gr~~~~KLKE~IPRQqF~ipIQA~IG~KIIARETiKa~RKdVtAKCYG 558 (598)
T TIGR01393 479 RESDLVKLDILINGEPVDALSFIVHRDKAYSRGREIVEKLKELIPRQQFEIPIQAAIGGKIIARETIKALRKDVTAKCYG 558 (598)
T ss_pred CCCCEEEEEEEECCCCCCEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHEECCCEEEEECCCCCCCCCEEEEECC
T ss_conf 43262899999848943368771235135889999998866228634666411022188068750354122550235208
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHCCCEECCHHHHHHHHCCC
Q ss_conf 7734787756898842178751077445889999974246
Q gi|254780321|r 565 GDITRKRKLLEKQKEGKKRMRRFGRVDIPQSAFISILKTD 604 (606)
Q Consensus 565 Gd~trk~KLl~~qk~GKkrmk~~g~v~ip~~af~~~l~~~ 604 (606)
|||||||||||||||||||||++|+|+||||||++|||.|
T Consensus 559 GDiTRKrKLLEKQKEGKKRMK~~G~VevPQeAFLaVLK~~ 598 (598)
T TIGR01393 559 GDITRKRKLLEKQKEGKKRMKQIGKVEVPQEAFLAVLKVD 598 (598)
T ss_pred CCCCHHHHHHHHHHHHHHHCCCCCCEECCHHHHHHHHCCC
T ss_conf 7704324545521021032157775315646865431279
No 2
>PRK05433 GTP-binding protein LepA; Provisional
Probab=100.00 E-value=0 Score=1768.65 Aligned_cols=599 Identities=63% Similarity=1.063 Sum_probs=592.8
Q ss_pred CCHHHCEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHCCEEEEEEEEEEEECCCCCEEEEEEEEC
Q ss_conf 98525317999801389877889999998298054444311305867798719505232799997437884389999617
Q gi|254780321|r 6 TPLSRIRNFSIVAHIDHGKSTLADRFIQHCRGLTEREMSSQVLDNMDIERERGITIKAQTVRLNYTSTDAKDYQLNLIDT 85 (606)
Q Consensus 6 ~p~~~IRN~~IiaHvDhGKTTL~d~lL~~tg~i~~~~~~~~vlD~~~~EreRGITIka~~~~~~~~~~~~~~y~iNlIDT 85 (606)
.++++|||||||||||||||||+||||+.||+++++++++|+||+|++|||||||||||++++.|.+.+|++|.+|||||
T Consensus 2 ~~~~~IRNf~IiAHIDhGKSTLaDrlL~~tg~i~~~~~~~q~lD~m~~ErERGITIka~~v~~~y~~~~g~~y~lNLIDT 81 (601)
T PRK05433 2 MDMKNIRNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYQLNLIDT 81 (601)
T ss_pred CCHHCCCEEEEEEECCCCHHHHHHHHHHHCCCCCCCCCHHHCCCCHHHHHHCCCEEEEEEEEEEEECCCCCEEEEEEECC
T ss_conf 63320455899994378888899999997099774432333145415576558369786799998848996799998548
Q ss_pred CCCCHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 87300279999999730268999986878865589999999970996799832678875321133888775553223210
Q gi|254780321|r 86 PGHVDFTYEVSRSLSACEGSLLVVDATQGVEAQTLANVYQAIDNNHEIITVLNKADLPSADPDRVKKQIEETIGISTEDA 165 (606)
Q Consensus 86 PGH~DF~~EV~r~l~a~dgaiLvVdA~~Gvq~QT~~~~~~A~~~~l~~I~viNKiD~~~A~~e~v~~ei~~~~g~~~~~i 165 (606)
|||+||+|||+|||+|||||||||||++||||||++||++|++++|++||||||||+|+||||+|.+||++++|++++++
T Consensus 82 PGHVDF~~EVsRSL~aceGalLlVDa~qGVqaQT~an~~~A~~~~L~iIpviNKIDlp~Ad~e~v~~qi~~~igl~~~ei 161 (601)
T PRK05433 82 PGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENDLEIIPVLNKIDLPAADPERVKQEIEDIIGIDASDA 161 (601)
T ss_pred CCCCCCCEEEEEEHHHCCCEEEEEECCCCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCHHHH
T ss_conf 98566450455603340725999976878560069999999987996577786146888998999999998868964777
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHCCCCHHHHHCCCCCCCCCEEECCCCCEEEEEEECCCCCCCCCEEEEECCCCCCCCCC
Q ss_conf 00111002232006787763210001111220123310121011475725999981698735584588733556421012
Q gi|254780321|r 166 LLVSAKTGEGIPLLLERIVQQLPSPTSPEGANAPLKALLIDSWYNSYLGVMVLVRIINGQLTKGQSIRLMGTNAKYQVER 245 (606)
Q Consensus 166 i~vSAktG~GV~~LLd~Iv~~iP~P~~~~~~~~Pl~alVfds~~D~~~G~I~~~RV~sG~lk~Gd~I~~~~~g~~~~v~~ 245 (606)
+++|||+|.||++|||+|++++|||++ ++++||+|||||||||+|+|+|+++||++|+|++||+|.+++++++|++.+
T Consensus 162 l~vSAKtG~GV~~lLdaIV~~iP~P~g--d~~~PL~ALIFDS~yD~YrGvV~~vRV~~G~lk~Gd~I~~~~t~~~~~v~e 239 (601)
T PRK05433 162 VLVSAKTGIGIEEVLEAIVERIPPPKG--DPDAPLKALIFDSWYDPYRGVVVLVRVVDGTLKKGDKIKMMSTGKEYEVDE 239 (601)
T ss_pred HHHHHHCCCCHHHHHHHHHHHCCCCCC--CCCCCHHHHHHHCCCCCCCCEEEEEEEECCEECCCCEEEEECCCCEEEEEE
T ss_conf 777523388879999999974799999--987343120123030467880799994088772585256412697167202
Q ss_pred CCCCCCCEEEEHHCCCCCHHHHHHCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHH
Q ss_conf 22335541240101247123322011002444454200046678532364552222126642126770245788999988
Q gi|254780321|r 246 IGILTPKMIDIEALYPGEIGVMIASIKEVSHTRVGDTITDDSSPTTSALPGFKPIQPVVFCGLFPVDATQFENLRTAINK 325 (606)
Q Consensus 246 ig~~~~~~~~v~~l~aGdVG~ii~gik~l~~~~vGDTl~~~~~p~~~~Lp~~~~~~P~v~~~i~p~~~~d~~~L~~aL~k 325 (606)
+|+|+|++.++++|.||||||+++|+|++.++++|||||+.++|..+|||||++++||||+|+||.+++||++|++||+|
T Consensus 240 vGi~~p~~~~~~~L~aGeVGyiiagiK~~~d~~vGDTit~~~~~~~~pLpGf~~~kP~Vfagi~P~~~~d~~~Lr~AL~K 319 (601)
T PRK05433 240 VGVFTPKMVPVDELSAGEVGYIIAGIKDVRDARVGDTITLAKNPAEEPLPGFKEVKPMVFAGLYPVDSDDYEDLRDALEK 319 (601)
T ss_pred EECCCCCCCCCCEECCCCEEEEEECCCCHHHCCCCCEEECCCCCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 42568985274501378447998245444323347605547777753467788999869972342770068999999998
Q ss_pred HHHHCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHHHCCCEEEEECCCCCEEEEEECCCEEECCCHHHCCCHHHH
Q ss_conf 86411221112567600042028996376789888988866449506973782330335315645412696662586778
Q gi|254780321|r 326 LRLNDASFSFELENSTALGFGFRCGFLGLLHLEIIQERLEREFSLNLIGTSPSVVYELYMHDGSMQKLSNPIDMPEVTKI 405 (606)
Q Consensus 326 L~~~D~sl~~e~Ets~aLg~Gfr~gglG~LHLeVi~eRL~rEfg~ev~~t~P~V~Ykv~~~dG~~~~Vd~p~~~p~~~~i 405 (606)
|++|||||+||+|+|+|||+||||||||+|||||++|||+||||+++++|+|+|+||++++||+.+.|+||++||+.+.|
T Consensus 320 L~LnD~Sl~~e~Ets~aLG~GfRcGFLGlLHmeIi~ERLeREf~~~vI~TaPsV~Y~v~~~~g~~~~v~nP~~~Pd~~~i 399 (601)
T PRK05433 320 LQLNDASLTYEPETSQALGFGFRCGFLGLLHMEIIQERLEREFDLDLITTAPSVVYEVTLTDGEVIEVDNPSKLPDPGKI 399 (601)
T ss_pred HHHCCCCEEEEECCCHHHCCCCHHCCCCHHHHHHHHHHHHHHCCCCEEEECCCEEEEEEECCCCEEEEECHHHCCCCCCC
T ss_conf 86357753763145444327621134306779999999998729846842795689999779979999685656886652
Q ss_pred HHHHCCEEEEEEEECCCCCHHHHHHHHHHHHEEECCCCCC-CEEEEEEEECHHHHHHHHHHHHHHHCCCEEEEEEEECCC
Q ss_conf 8862326999998083100038999886300142443368-369999996043332204687676357418889854354
Q gi|254780321|r 406 AELREPWIQVTIITPNEYLGSILKLCQERRGIQIDMSHLD-NRAMIVYELPLNEVIFDFYDRLKSVSKGYASFDYNVIDY 484 (606)
Q Consensus 406 ~~i~EPi~~~~I~~P~ey~G~Vm~~l~~RRG~~~~m~~~~-~~~~i~~~vPl~Eli~~f~~~LkS~T~G~as~~ye~~~Y 484 (606)
++++|||++++|++|+||+|+||+||.+|||++.+|+|++ +|++++|++||+|+++||||+|||+|+||||||||+.+|
T Consensus 400 ~~i~EP~v~~~I~~P~ey~G~vm~Lc~~rRG~~~~~~y~~~~rv~l~y~lPL~Eii~DFfDkLKS~s~GYAS~dYe~~~y 479 (601)
T PRK05433 400 EEIEEPIVKATIIVPQEYLGAVMELCQEKRGVQIDMEYLGNTRVMLTYELPLAEIVFDFFDRLKSVSRGYASLDYEFIGY 479 (601)
T ss_pred EEEECCEEEEEEECCHHHHHHHHHHHHHHHCEEECCCCCCCCEEEEEEECCHHHHHHHHHHHHHCCCCCCEEEECCCCCC
T ss_conf 18985668999966389889999999985326531413678759999956589998878787541165515760210344
Q ss_pred EECCEEEEEEEECCCCCCEEEEEEEHHHHHHHHHHHHHHHHHCCCHHHCCCCCEEEECCEEEEEECCCCCCCCEEEEECC
Q ss_conf 64366797488628824356874215779999999999987408701020022045647889741256420320323017
Q gi|254780321|r 485 RDSDLVKLTILVNNETIDALSILVHRSVSEKRGRGICEKLKNLIPQQMFQIAIQAAIGGRIIARETVKARRKDVTAKCYG 564 (606)
Q Consensus 485 ~~~dlvk~~ilin~~~vdals~i~h~~~a~~~gr~~~~~L~~~iprq~F~v~iqa~~~~~iiare~i~~~rkdvt~kcyg 564 (606)
+++||||++|||||++|||||+||||++|+.+||++|+|||++||||||+|||||++||||||||||+|+||||||||||
T Consensus 480 ~~sdLvKldIliNg~~Vdals~i~h~~~a~~~gr~~~~kLk~~IPrq~f~v~IQA~ig~kiiAreti~a~RKdVtaKcyG 559 (601)
T PRK05433 480 RESDLVKLDILINGEPVDALSFIVHRDKAYERGRALVEKLKELIPRQQFEIPIQAAIGSKIIARETIKALRKDVLAKCYG 559 (601)
T ss_pred CCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCHHHHHHCCEEEEEECCCHHHCCEEEECCC
T ss_conf 51687899999888542466511228889999999999998558874414477675678689932151320642335138
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHCCCEECCHHHHHHHHCCCCC
Q ss_conf 773478775689884217875107744588999997424689
Q gi|254780321|r 565 GDITRKRKLLEKQKEGKKRMRRFGRVDIPQSAFISILKTDNE 606 (606)
Q Consensus 565 Gd~trk~KLl~~qk~GKkrmk~~g~v~ip~~af~~~l~~~~~ 606 (606)
||||||||||+|||+||||||++|+|+||||||+++||+|++
T Consensus 560 GDitRK~KLLekQkeGKkrmk~iG~V~ipqeaF~~vLk~~~~ 601 (601)
T PRK05433 560 GDISRKRKLLEKQKEGKKRMKQIGNVEIPQEAFLAVLKVDDD 601 (601)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCC
T ss_conf 981688999999865268787158970799999999716799
No 3
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=0 Score=1726.43 Aligned_cols=601 Identities=65% Similarity=1.079 Sum_probs=595.5
Q ss_pred CCCCHHHCEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHCCEEEEEEEEEEEECCCCCEEEEEEE
Q ss_conf 89985253179998013898778899999982980544443113058677987195052327999974378843899996
Q gi|254780321|r 4 KPTPLSRIRNFSIVAHIDHGKSTLADRFIQHCRGLTEREMSSQVLDNMDIERERGITIKAQTVRLNYTSTDAKDYQLNLI 83 (606)
Q Consensus 4 ~~~p~~~IRN~~IiaHvDhGKTTL~d~lL~~tg~i~~~~~~~~vlD~~~~EreRGITIka~~~~~~~~~~~~~~y~iNlI 83 (606)
..+|+++|||||||||+|||||||+||||+.||++++|++.+|+||+|++|||||||||+|++++.|+..+|++|.+|||
T Consensus 2 ~~~~~~~IRNFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlI 81 (603)
T COG0481 2 TFTPQKNIRNFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLI 81 (603)
T ss_pred CCCCHHHCCCEEEEEEECCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEEEEEEECCCCEEEEEEC
T ss_conf 86725442322799984278204889999984676767888875221346766284587327899999479977999972
Q ss_pred ECCCCCHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 17873002799999997302689999868788655899999999709967998326788753211338887755532232
Q gi|254780321|r 84 DTPGHVDFTYEVSRSLSACEGSLLVVDATQGVEAQTLANVYQAIDNNHEIITVLNKADLPSADPDRVKKQIEETIGISTE 163 (606)
Q Consensus 84 DTPGH~DF~~EV~r~l~a~dgaiLvVdA~~Gvq~QT~~~~~~A~~~~l~~I~viNKiD~~~A~~e~v~~ei~~~~g~~~~ 163 (606)
|||||+||+|||||||+||+||||||||+|||||||++|+|+|++++|++||||||||+|+||||++++||++.+|++++
T Consensus 82 DTPGHVDFsYEVSRSLAACEGalLvVDAsQGveAQTlAN~YlAle~~LeIiPViNKIDLP~Adpervk~eIe~~iGid~~ 161 (603)
T COG0481 82 DTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENNLEIIPVLNKIDLPAADPERVKQEIEDIIGIDAS 161 (603)
T ss_pred CCCCCCCEEEEEHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCHHHHHHHHHHHHCCCCC
T ss_conf 79984436777613376377718999876553788999999998769679975322568878978999999987098952
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHCCCCHHHHHCCCCCCCCCEEECCCCCEEEEEEECCCCCCCCCEEEEECCCCCCCC
Q ss_conf 10001110022320067877632100011112201233101210114757259999816987355845887335564210
Q gi|254780321|r 164 DALLVSAKTGEGIPLLLERIVQQLPSPTSPEGANAPLKALLIDSWYNSYLGVMVLVRIINGQLTKGQSIRLMGTNAKYQV 243 (606)
Q Consensus 164 ~ii~vSAktG~GV~~LLd~Iv~~iP~P~~~~~~~~Pl~alVfds~~D~~~G~I~~~RV~sG~lk~Gd~I~~~~~g~~~~v 243 (606)
+++.+|||+|.||+++|++|++++|||++ ++++||+|||||||||+|+|+|+++||++|++++||+|.+|++|++|+|
T Consensus 162 dav~~SAKtG~gI~~iLe~Iv~~iP~P~g--~~~~pLkALifDS~yD~Y~GVv~~vRi~dG~ik~gdki~~m~tg~~y~V 239 (603)
T COG0481 162 DAVLVSAKTGIGIEDVLEAIVEKIPPPKG--DPDAPLKALIFDSWYDNYLGVVVLVRIFDGTLKKGDKIRMMSTGKEYEV 239 (603)
T ss_pred CCEEEECCCCCCHHHHHHHHHHHCCCCCC--CCCCCCEEEEEECCCCCCCEEEEEEEEEECEECCCCEEEEEECCCEEEE
T ss_conf 00467634689979999999962898989--9987515888841234554289999986243447998999746976888
Q ss_pred CCCCCCCCCEEEEHHCCCCCHHHHHHCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHH
Q ss_conf 12223355412401012471233220110024444542000466785323645522221266421267702457889999
Q gi|254780321|r 244 ERIGILTPKMIDIEALYPGEIGVMIASIKEVSHTRVGDTITDDSSPTTSALPGFKPIQPVVFCGLFPVDATQFENLRTAI 323 (606)
Q Consensus 244 ~~ig~~~~~~~~v~~l~aGdVG~ii~gik~l~~~~vGDTl~~~~~p~~~~Lp~~~~~~P~v~~~i~p~~~~d~~~L~~aL 323 (606)
.++|+|.|++.++++|.||||||++++||++.++++|||+|+.++|..+|||||++++||||+|+||++++||+.|++||
T Consensus 240 ~evGvftP~~~~~~~L~aGeVG~~~a~iK~v~d~~VGDTiT~~~~p~~e~LpGfk~~~P~Vf~GlyPid~~dye~LrdAl 319 (603)
T COG0481 240 DEVGIFTPKMVKVDELKAGEVGYIIAGIKDVRDARVGDTITLASNPATEPLPGFKEVKPMVFAGLYPVDSDDYEDLRDAL 319 (603)
T ss_pred EEEEECCCCCCCCCCCCCCCEEEEEEEEEECCCCCCCCEEECCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHH
T ss_conf 88751167633246445773448998511115686555675067877666888776785599841116666789999999
Q ss_pred HHHHHHCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHHHCCCEEEEECCCCCEEEEEECCCEEECCCHHHCCCHH
Q ss_conf 88864112211125676000420289963767898889888664495069737823303353156454126966625867
Q gi|254780321|r 324 NKLRLNDASFSFELENSTALGFGFRCGFLGLLHLEIIQERLEREFSLNLIGTSPSVVYELYMHDGSMQKLSNPIDMPEVT 403 (606)
Q Consensus 324 ~kL~~~D~sl~~e~Ets~aLg~Gfr~gglG~LHLeVi~eRL~rEfg~ev~~t~P~V~Ykv~~~dG~~~~Vd~p~~~p~~~ 403 (606)
+||++||+||+||+|||.||||||||||||+|||||++|||+||||+++|+|+|+|+|+|.++||+...|+||++||+.+
T Consensus 320 eKL~LNDasl~~E~EtS~ALGfGfRcGFLGlLHmeiiqERLeREf~ldlI~TaPsV~Y~v~~~~g~~~~i~NPs~~P~~~ 399 (603)
T COG0481 320 EKLQLNDASLTYEPETSQALGFGFRCGFLGLLHMEIIQERLEREFDLDLITTAPSVVYKVELTDGEEIEVDNPSDLPDPN 399 (603)
T ss_pred HHCCCCCCEEEECCCCCHHCCCCEEEHHHHHHHHHHHHHHHHHHHCCCEEECCCCEEEEEEECCCCEEEECCHHHCCCHH
T ss_conf 74433530156322521330575630102278999999999876086348438946899997389689952857688831
Q ss_pred HHHHHHCCEEEEEEEECCCCCHHHHHHHHHHHHEEECCCCCC-CEEEEEEEECHHHHHHHHHHHHHHHCCCEEEEEEEEC
Q ss_conf 788862326999998083100038999886300142443368-3699999960433322046876763574188898543
Q gi|254780321|r 404 KIAELREPWIQVTIITPNEYLGSILKLCQERRGIQIDMSHLD-NRAMIVYELPLNEVIFDFYDRLKSVSKGYASFDYNVI 482 (606)
Q Consensus 404 ~i~~i~EPi~~~~I~~P~ey~G~Vm~~l~~RRG~~~~m~~~~-~~~~i~~~vPl~Eli~~f~~~LkS~T~G~as~~ye~~ 482 (606)
.|++++|||++++|++|+||+|+||+||++|||.+.+|+|++ +|+.|.|++||+|+++||||+|||.|+|||||||||.
T Consensus 400 ~I~~i~EP~v~~~ii~P~eylG~vm~Lcq~kRG~~~~m~yl~~~rv~l~Y~lPl~Eiv~DFfDkLKS~skGYAS~DYe~~ 479 (603)
T COG0481 400 KIEEIEEPYVKATIITPQEYLGNVMELCQEKRGIQIDMEYLDQNRVMLTYELPLAEIVFDFFDKLKSISKGYASFDYEFI 479 (603)
T ss_pred HHHEEECCEEEEEEECCHHHHHHHHHHHHHHCCCEECCEEECCCEEEEEEECCHHHHHHHHHHHHHCCCCCEEEECCCCC
T ss_conf 32105176569999570788789999998722764633670376499999464788888876764222465064311002
Q ss_pred CCEECCEEEEEEEECCCCCCEEEEEEEHHHHHHHHHHHHHHHHHCCCHHHCCCCCEEEECCEEEEEECCCCCCCCEEEEE
Q ss_conf 54643667974886288243568742157799999999999874087010200220456478897412564203203230
Q gi|254780321|r 483 DYRDSDLVKLTILVNNETIDALSILVHRSVSEKRGRGICEKLKNLIPQQMFQIAIQAAIGGRIIARETVKARRKDVTAKC 562 (606)
Q Consensus 483 ~Y~~~dlvk~~ilin~~~vdals~i~h~~~a~~~gr~~~~~L~~~iprq~F~v~iqa~~~~~iiare~i~~~rkdvt~kc 562 (606)
+|+++||||++||+||++|||||+|+||++|+.+||++|+|||++||||||+|||||++|+||||||||+|+||||||||
T Consensus 480 ~y~~~~lVK~dIlvNge~VDALs~ivHrd~A~~rgr~~~~KlKelIPrq~FeipIQAaIg~kiIARetIkalRKdVlAKC 559 (603)
T COG0481 480 GYRESDLVKVDILVNGEKVDALSFIVHRDNAYERGRELVEKLKELIPRQQFEIPIQAAIGSKIIARETIKALRKDVLAKC 559 (603)
T ss_pred CCCCCCEEEEEEEECCCCCCCEEEEECHHHHHHHHHHHHHHHHHHCCHHHEEEEEEHHHCCEEEEHHHHHHHHCCHHHHH
T ss_conf 46405658999995586334122341056689989999999986564744104002233784787444577641411200
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHCCCEECCHHHHHHHHCCCCC
Q ss_conf 17773478775689884217875107744588999997424689
Q gi|254780321|r 563 YGGDITRKRKLLEKQKEGKKRMRRFGRVDIPQSAFISILKTDNE 606 (606)
Q Consensus 563 ygGd~trk~KLl~~qk~GKkrmk~~g~v~ip~~af~~~l~~~~~ 606 (606)
||||||||||||+||||||||||++|+|+||||||+++||.|++
T Consensus 560 YGGDisRKrKLLeKQKeGKKRMK~iG~VeiPQeAFlavLk~~~~ 603 (603)
T COG0481 560 YGGDISRKRKLLEKQKEGKKRMKQIGNVEIPQEAFLAVLKMDDD 603 (603)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCC
T ss_conf 17751178899987666668887247871688999999842599
No 4
>KOG0462 consensus
Probab=100.00 E-value=0 Score=1489.60 Aligned_cols=594 Identities=51% Similarity=0.864 Sum_probs=583.8
Q ss_pred CCHHHCEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHCCEEEEEEEEEEEECCCCCEEEEEEEEC
Q ss_conf 98525317999801389877889999998298054444311305867798719505232799997437884389999617
Q gi|254780321|r 6 TPLSRIRNFSIVAHIDHGKSTLADRFIQHCRGLTEREMSSQVLDNMDIERERGITIKAQTVRLNYTSTDAKDYQLNLIDT 85 (606)
Q Consensus 6 ~p~~~IRN~~IiaHvDhGKTTL~d~lL~~tg~i~~~~~~~~vlD~~~~EreRGITIka~~~~~~~~~~~~~~y~iNlIDT 85 (606)
.|.+|||||+||||||||||||+||||++||++..+.+++|+||++++|||||||||||+++|.|.+ ++.|.+|||||
T Consensus 55 ~P~~~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~--~~~ylLNLIDT 132 (650)
T KOG0462 55 DPVENIRNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKD--GQSYLLNLIDT 132 (650)
T ss_pred CCHHHCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEEEEEEEC--CCCEEEEEECC
T ss_conf 9066313137999842770168999999828778887556642454456652847875123799975--87328875058
Q ss_pred CCCCHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 87300279999999730268999986878865589999999970996799832678875321133888775553223210
Q gi|254780321|r 86 PGHVDFTYEVSRSLSACEGSLLVVDATQGVEAQTLANVYQAIDNNHEIITVLNKADLPSADPDRVKKQIEETIGISTEDA 165 (606)
Q Consensus 86 PGH~DF~~EV~r~l~a~dgaiLvVdA~~Gvq~QT~~~~~~A~~~~l~~I~viNKiD~~~A~~e~v~~ei~~~~g~~~~~i 165 (606)
|||+||+|||+|+|+|||||||||||.|||||||++|+|+|+++||.+||||||||+|+||||+|..|++++|+++++++
T Consensus 133 PGHvDFs~EVsRslaac~G~lLvVDA~qGvqAQT~anf~lAfe~~L~iIpVlNKIDlp~adpe~V~~q~~~lF~~~~~~~ 212 (650)
T KOG0462 133 PGHVDFSGEVSRSLAACDGALLVVDASQGVQAQTVANFYLAFEAGLAIIPVLNKIDLPSADPERVENQLFELFDIPPAEV 212 (650)
T ss_pred CCCCCCCCEEHEHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCE
T ss_conf 98555541000126535715999976768128899999999985974888653157898898999999999866896124
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHCCCCHHHHHCCCCCCCCCEEECCCCCEEEEEEECCCCCCCCCEEEEECCCCCCCCCC
Q ss_conf 00111002232006787763210001111220123310121011475725999981698735584588733556421012
Q gi|254780321|r 166 LLVSAKTGEGIPLLLERIVQQLPSPTSPEGANAPLKALLIDSWYNSYLGVMVLVRIINGQLTKGQSIRLMGTNAKYQVER 245 (606)
Q Consensus 166 i~vSAktG~GV~~LLd~Iv~~iP~P~~~~~~~~Pl~alVfds~~D~~~G~I~~~RV~sG~lk~Gd~I~~~~~g~~~~v~~ 245 (606)
+++|||+|.|++.||++|++++|||++ ..++|||||+||||||.|+|+|+++||.+|.+++||+|..++++++|.+.+
T Consensus 213 i~vSAK~G~~v~~lL~AII~rVPpP~~--~~d~plr~Lifds~yD~y~G~I~~vrv~~G~vrkGdkV~~~~t~~~yev~~ 290 (650)
T KOG0462 213 IYVSAKTGLNVEELLEAIIRRVPPPKG--IRDAPLRMLIFDSEYDEYRGVIALVRVVDGVVRKGDKVQSAATGKSYEVKV 290 (650)
T ss_pred EEEEECCCCCHHHHHHHHHHHCCCCCC--CCCCCHHHHHHHHHHHHHCCEEEEEEEEEEEEECCCEEEEEECCCCEEEEE
T ss_conf 888702575688899999963799988--888516777666335442535899998634462187888861376067677
Q ss_pred CCCCCCCEEEEHHCCCCCHHHHHHCCCCCCCCCCCCEECCCCC-CCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHH
Q ss_conf 2233554124010124712332201100244445420004667-853236455222212664212677024578899998
Q gi|254780321|r 246 IGILTPKMIDIEALYPGEIGVMIASIKEVSHTRVGDTITDDSS-PTTSALPGFKPIQPVVFCGLFPVDATQFENLRTAIN 324 (606)
Q Consensus 246 ig~~~~~~~~v~~l~aGdVG~ii~gik~l~~~~vGDTl~~~~~-p~~~~Lp~~~~~~P~v~~~i~p~~~~d~~~L~~aL~ 324 (606)
+|+|.|+++++.++.||+||||+|++++++++.|||||++... ...++||+|++.+||||++.||.+.+||..|+++++
T Consensus 291 vgvm~p~~~~~~~l~agqvGyIi~~mr~~~ea~IGdTi~~~~~~~~v~tl~~~~~~~pMvFvg~fP~dgsd~~~l~~a~e 370 (650)
T KOG0462 291 VGVMRPEMTPVVELDAGQVGYIICNMRNVKEAQIGDTIAHKSVTKAVETLPGFEPTKPMVFVGLFPLDGSDYETLRDAIE 370 (650)
T ss_pred EEEECCCCEEEEEECCCCCCEEEECCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCEEEECCCCCCCCHHHHHHHHHH
T ss_conf 57763576143232145425367504466545002300000357646757888887624885366676205555777999
Q ss_pred HHHHHCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHHHCCCEEEEECCCCCEEEEEECCCEEECCCHHHCCCHHH
Q ss_conf 88641122111256760004202899637678988898886644950697378233033531564541269666258677
Q gi|254780321|r 325 KLRLNDASFSFELENSTALGFGFRCGFLGLLHLEIIQERLEREFSLNLIGTSPSVVYELYMHDGSMQKLSNPIDMPEVTK 404 (606)
Q Consensus 325 kL~~~D~sl~~e~Ets~aLg~Gfr~gglG~LHLeVi~eRL~rEfg~ev~~t~P~V~Ykv~~~dG~~~~Vd~p~~~p~~~~ 404 (606)
||++||+|+.+++|+|.|||+||||||||+|||+|++|||+||||.++++|+|+|+||+...||++..+.||+.||+...
T Consensus 371 rL~lnd~sv~v~~~~s~aLg~gwr~gflG~LHm~Vf~erle~Eyg~elivt~PtV~Yr~~~~~~~~~~i~np~~fp~~~~ 450 (650)
T KOG0462 371 RLVLNDESVTVIKESSGALGQGWRLGFLGLLHMEVFIERLEREYGAELIVTPPTVPYRVVYSNGDEILISNPALFPDPSD 450 (650)
T ss_pred HHHCCCCCCEEEECCCCCCCCCEEEECCCEEEHHHHHHHHHHHCCCEEEECCCCCEEEEEECCCCEEEECCHHHCCCCCC
T ss_conf 87515501145524773003645860312123899998788861953664389632799845886255228533898223
Q ss_pred HHHHHCCEEEEEEEECCCCCHHHHHHHHHHHHEEECCCCCC-CEEEEEEEECHHHHHHHHHHHHHHHCCCEEEEEEEECC
Q ss_conf 88862326999998083100038999886300142443368-36999999604333220468767635741888985435
Q gi|254780321|r 405 IAELREPWIQVTIITPNEYLGSILKLCQERRGIQIDMSHLD-NRAMIVYELPLNEVIFDFYDRLKSVSKGYASFDYNVID 483 (606)
Q Consensus 405 i~~i~EPi~~~~I~~P~ey~G~Vm~~l~~RRG~~~~m~~~~-~~~~i~~~vPl~Eli~~f~~~LkS~T~G~as~~ye~~~ 483 (606)
+.+++||++.++|++|+||+|.||++|++|||++.+|.+.+ +|++|.|.+||+||+.|||++|||+|+|||||||||++
T Consensus 451 v~~~lEP~v~~tii~P~Ey~G~Vi~Lc~~rRgeq~dm~~i~~nr~~lky~lPl~elv~df~~~lks~tsGyAs~dye~~g 530 (650)
T KOG0462 451 VKEFLEPYVEATIITPDEYVGAVIELCSERRGEQKDMTYIDGNRVMLKYQLPLRELVGDFFDRLKSLTSGYASFDYEDAG 530 (650)
T ss_pred CHHHCCCEEEEEEECCHHHHHHHHHHHHHHHHHEECCEECCCCEEEEEEECCHHHHHHHHHHHHHCCCCCEEEEEECCCC
T ss_conf 30111755799997768988999999987221000324415876999995676888999998874036550577621356
Q ss_pred CEECCEEEEEEEECCCCCCEEEEEEEHHHHHHHHHHHHHHHHHCCCHHHCCCCCEEEECCEEEEEECCCCCCCCEEEEEC
Q ss_conf 46436679748862882435687421577999999999998740870102002204564788974125642032032301
Q gi|254780321|r 484 YRDSDLVKLTILVNNETIDALSILVHRSVSEKRGRGICEKLKNLIPQQMFQIAIQAAIGGRIIARETVKARRKDVTAKCY 563 (606)
Q Consensus 484 Y~~~dlvk~~ilin~~~vdals~i~h~~~a~~~gr~~~~~L~~~iprq~F~v~iqa~~~~~iiare~i~~~rkdvt~kcy 563 (606)
|+++||||++|++|++.||+||.|+|+++|+++||.+|++||+++|||||+|+|||++|+++||||+|+|+||||+||||
T Consensus 531 Y~~sdLvkldil~n~~~vd~l~tivh~~~a~~rGr~~v~klk~~ip~Q~~ev~iqa~igsk~iare~i~a~rKdv~akl~ 610 (650)
T KOG0462 531 YQASDLVKLDILLNGKMVDGLSTIVHLSKAESRGREFVQKLKDLIPRQIFEVHIQACIGSKNIARETISAYRKDVLAKLY 610 (650)
T ss_pred CCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCHHHHHHHHHHCCCEEEEEC
T ss_conf 65455157776403102456777878987999999999876664412432121364236305568999873556156765
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHCCCEECCHHHHHHHHCC
Q ss_conf 7773478775689884217875107744588999997424
Q gi|254780321|r 564 GGDITRKRKLLEKQKEGKKRMRRFGRVDIPQSAFISILKT 603 (606)
Q Consensus 564 gGd~trk~KLl~~qk~GKkrmk~~g~v~ip~~af~~~l~~ 603 (606)
|||+||++|||++|||||||||++|||+||||||+++||+
T Consensus 611 ggdv~r~~klL~~q~egkk~mk~vgnI~ipkeaf~~vlKr 650 (650)
T KOG0462 611 GGDVTRLKKLLKKQAEGKKRMKTVGNIRIPKEAFINVLKR 650 (650)
T ss_pred CCCHHHHHHHHHHHHCCCEEEECCCCEECCHHHHHHHHCC
T ss_conf 8732459999876643855663255274377998887419
No 5
>TIGR01394 TypA_BipA GTP-binding protein TypA; InterPro: IPR006298 This bacterial (and Arabidopsis) protein, termed TypA or BipA, is a GTP-binding protein. It is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.; GO: 0005525 GTP binding, 0005622 intracellular.
Probab=100.00 E-value=0 Score=1165.12 Aligned_cols=518 Identities=29% Similarity=0.500 Sum_probs=471.7
Q ss_pred CEEEEEECCCCCCHHHHHHHHHHHCC-CCCC-CC-CCCEEECCCHHHHHHCCEEEEEEEEEEEECCCCCEEEEEEEECCC
Q ss_conf 31799980138987788999999829-8054-44-431130586779871950523279999743788438999961787
Q gi|254780321|r 11 IRNFSIVAHIDHGKSTLADRFIQHCR-GLTE-RE-MSSQVLDNMDIERERGITIKAQTVRLNYTSTDAKDYQLNLIDTPG 87 (606)
Q Consensus 11 IRN~~IiaHvDhGKTTL~d~lL~~tg-~i~~-~~-~~~~vlD~~~~EreRGITIka~~~~~~~~~~~~~~y~iNlIDTPG 87 (606)
|||||||||||||||||+|+||.+|| ++.+ ++ ..+++|||+|+||||||||.|+++++.|.+.+| .++||||||||
T Consensus 1 iRNIAIIAHVDHGKTTLVD~LL~Qsgf~f~~~~~~~~ER~MDSNDLErERGITILaKNTav~y~g~dG-~~~INIvDTPG 79 (609)
T TIGR01394 1 IRNIAIIAHVDHGKTTLVDALLKQSGFTFRADNEAVAERVMDSNDLERERGITILAKNTAVRYNGKDG-VTKINIVDTPG 79 (609)
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHCCCCCCCEEEEEEECCCCC-EEEEEEEECCC
T ss_conf 97189998806994368988888765886415883213540676521001552013003662528897-18997781689
Q ss_pred CCHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCHHHHHHHHH-HHHHHH--
Q ss_conf 30027999999973026899998687886558999999997099679983267887532113388877555-322321--
Q gi|254780321|r 88 HVDFTYEVSRSLSACEGSLLVVDATQGVEAQTLANVYQAIDNNHEIITVLNKADLPSADPDRVKKQIEETI-GISTED-- 164 (606)
Q Consensus 88 H~DF~~EV~r~l~a~dgaiLvVdA~~Gvq~QT~~~~~~A~~~~l~~I~viNKiD~~~A~~e~v~~ei~~~~-g~~~~~-- 164 (606)
|+||+|||+|.|+|+|||||||||.+||||||++++.+|+++||++|+||||||||+|||++|.++++||| +++++|
T Consensus 80 HADFGGEVERvL~MVDGvlLlVDA~EGPMPQTrFVL~KAL~~gLkPIVViNKiDrp~ARP~eV~d~vFDLF~~LgA~deQ 159 (609)
T TIGR01394 80 HADFGGEVERVLGMVDGVLLLVDASEGPMPQTRFVLKKALELGLKPIVVINKIDRPSARPDEVVDEVFDLFIELGADDEQ 159 (609)
T ss_pred CCCCCCEEEEECEEEEEEEEEEECCCCCCCCCHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCCC
T ss_conf 88788658873302405899985788898853478999995689369997134788788378875787888853888001
Q ss_pred ----HHHHHHHCCC---------------CCCHHHHHHHHHHHCCCCHHHHHCCCCCCCCCEEECCCCCEEEEEEECCCC
Q ss_conf ----0001110022---------------320067877632100011112201233101210114757259999816987
Q gi|254780321|r 165 ----ALLVSAKTGE---------------GIPLLLERIVQQLPSPTSPEGANAPLKALLIDSWYNSYLGVMVLVRIINGQ 225 (606)
Q Consensus 165 ----ii~vSAktG~---------------GV~~LLd~Iv~~iP~P~~~~~~~~Pl~alVfds~~D~~~G~I~~~RV~sG~ 225 (606)
++|+||+.|. +++||||+|++|+|+|++ ++|+||||||+...||+|+|||++|||++|+
T Consensus 160 LDFP~vYASa~~G~A~l~~~~dg~~~~~~~m~PLFd~I~~hvPaP~~--~~d~PlQmlvt~ldy~~y~GRI~~GRv~~G~ 237 (609)
T TIGR01394 160 LDFPIVYASARAGWASLDKDKDGLDDDSEDMAPLFDAILRHVPAPKG--DLDEPLQMLVTNLDYDEYLGRIAIGRVHRGT 237 (609)
T ss_pred CCHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCC--CCCCCHHHEEEECCCCCCCCEEEEEEEEECE
T ss_conf 01256766523672014466577887220178999898640688898--8876242100011014677669999875056
Q ss_pred CCCCCEEEEECCC-CCC---CCCCC-CCCCCCEEEEHHCCCCCHHHHHHCCCCCCCCCCCCEECCCCCCCCCCCCCCCCC
Q ss_conf 3558458873355-642---10122-233554124010124712332201100244445420004667853236455222
Q gi|254780321|r 226 LTKGQSIRLMGTN-AKY---QVERI-GILTPKMIDIEALYPGEIGVMIASIKEVSHTRVGDTITDDSSPTTSALPGFKPI 300 (606)
Q Consensus 226 lk~Gd~I~~~~~g-~~~---~v~~i-g~~~~~~~~v~~l~aGdVG~ii~gik~l~~~~vGDTl~~~~~p~~~~Lp~~~~~ 300 (606)
||+||+|.+++.. ++. ||+++ ++.+.++.++|++.|||| |.+.++.++.||||||++++| +|||.++.+
T Consensus 238 vk~Gq~V~~~~~d~g~~~~~ri~~L~~f~GL~R~~~d~A~AGDI----vAvaG~~~~~IGeTiad~~~~--~ALP~~~vD 311 (609)
T TIGR01394 238 VKKGQQVALMKRDDGTIENGRISKLLGFEGLERVEIDEAGAGDI----VAVAGLEDINIGETIADPEAP--EALPLITVD 311 (609)
T ss_pred ECCCCEEEEEECCCCEEEEEEEEEEEECCCCEEEECCCCCCCCE----EEEECCCCCCCCCEECCCCCC--CCCCCCCCC
T ss_conf 54686479872469689777764542015711000455798778----999077988735211333346--788711258
Q ss_pred CCEEEEEECCCCHHHHH-----------HHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHHHCC
Q ss_conf 21266421267702457-----------8899998886411221112567600042028996376789888988866449
Q gi|254780321|r 301 QPVVFCGLFPVDATQFE-----------NLRTAINKLRLNDASFSFELENSTALGFGFRCGFLGLLHLEIIQERLEREFS 369 (606)
Q Consensus 301 ~P~v~~~i~p~~~~d~~-----------~L~~aL~kL~~~D~sl~~e~Ets~aLg~Gfr~gglG~LHLeVi~eRL~rEfg 369 (606)
+|+++| .|.+|+|||+ +++++|.|..+.+-||+|++-.+.- .|+|||||||||.|++|+|||| |
T Consensus 312 EPT~sM-tF~vN~SPlAG~EVGk~VTSR~i~dRL~rEL~~NvALrVe~t~~~D---~f~VsGRGELhLsILiEtMRRE-G 386 (609)
T TIGR01394 312 EPTLSM-TFSVNDSPLAGKEVGKFVTSRQIRDRLERELETNVALRVEDTESAD---KFEVSGRGELHLSILIETMRRE-G 386 (609)
T ss_pred CCCEEE-EEEECCCCCCCCCCCCEECCCCHHHHHHHHHHCCCEEEEECCCCCC---CEEEECCEEEHHHHHHHCCCCC-C
T ss_conf 881289-9875288765532573032441578999986317145640389887---3487201113023454203444-4
Q ss_pred CEEEEECCCCCEEEEEECCCEEECCCHHHCCCHHHHHHHHCCEEEEEEEECCCCCHHHHHHHHHHHHEEECCCCC-C-CE
Q ss_conf 506973782330335315645412696662586778886232699999808310003899988630014244336-8-36
Q gi|254780321|r 370 LNLIGTSPSVVYELYMHDGSMQKLSNPIDMPEVTKIAELREPWIQVTIITPNEYLGSILKLCQERRGIQIDMSHL-D-NR 447 (606)
Q Consensus 370 ~ev~~t~P~V~Ykv~~~dG~~~~Vd~p~~~p~~~~i~~i~EPi~~~~I~~P~ey~G~Vm~~l~~RRG~~~~m~~~-~-~~ 447 (606)
||+.+++|+|+|| ..||+. +|||+.++|+|||||+|.||+.|+.|||+|.+|.+. + ||
T Consensus 387 fEl~Vg~P~Vi~k--~~dG~k------------------~EP~E~~~IDVPEe~~G~V~e~Lg~RKgEm~~M~~~g~EG~ 446 (609)
T TIGR01394 387 FELQVGRPQVIYK--EIDGKK------------------LEPIEELTIDVPEEHVGAVIEKLGKRKGEMKDMEPSGNEGR 446 (609)
T ss_pred EEEEECCCEEEEE--EECCEE------------------ECCEEEEEEECCCCCCCHHHHHHCCCCEEEEECCCCCCCCE
T ss_conf 1475359778998--458853------------------18756999802853354666531478347772567699646
Q ss_pred EEEEEEECHHHHHHHHHHHHHHHCCCEEEEEEEECCCEE---CCE--EEEEEEECCCCCCEEEEEEEHHHHHHHHHHHHH
Q ss_conf 999999604333220468767635741888985435464---366--797488628824356874215779999999999
Q gi|254780321|r 448 AMIVYELPLNEVIFDFYDRLKSVSKGYASFDYNVIDYRD---SDL--VKLTILVNNETIDALSILVHRSVSEKRGRGICE 522 (606)
Q Consensus 448 ~~i~~~vPl~Eli~~f~~~LkS~T~G~as~~ye~~~Y~~---~dl--vk~~ilin~~~vdals~i~h~~~a~~~gr~~~~ 522 (606)
++|+|.+|+|+|| ||++++.|+|+|+|.|++.|.+|+| ++| +.+|+||+.+. |.+++|
T Consensus 447 tRl~F~~PsRGLI-Gfr~~FlT~TrG~Gimn~~F~~Y~P~~pG~i~~R~~GsLVs~~~----------------G~a~~Y 509 (609)
T TIGR01394 447 TRLEFVIPSRGLI-GFRTEFLTDTRGTGIMNHVFDEYEPWKPGEIETRRNGSLVSMED----------------GTATAY 509 (609)
T ss_pred EEEEEECCCCCHH-HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEECC----------------CCHHHH
T ss_conf 9999981664001-22024544102131120121025788876877751415899268----------------810667
Q ss_pred HHHHCCCHH-HCCCCCEEEECCEEEEEECCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHC
Q ss_conf 987408701-02002204564788974125642032032301777347877568988421787510
Q gi|254780321|r 523 KLKNLIPQQ-MFQIAIQAAIGGRIIARETVKARRKDVTAKCYGGDITRKRKLLEKQKEGKKRMRRF 587 (606)
Q Consensus 523 ~L~~~iprq-~F~v~iqa~~~~~iiare~i~~~rkdvt~kcygGd~trk~KLl~~qk~GKkrmk~~ 587 (606)
+|.+|+.|. ||.-|.+.+|.||||| +|++.+|+.+| |+|+|||+|.|++||.-.-.+
T Consensus 510 aL~nLqeRG~~Fv~pG~~VY~GMIiG---EhsR~~DL~VN-----~~K~K~LTN~RsSg~D~~~~L 567 (609)
T TIGR01394 510 ALWNLQERGRLFVSPGTEVYEGMIIG---EHSRENDLDVN-----VCKAKKLTNVRSSGKDEAVKL 567 (609)
T ss_pred HHHHHHHCCCEEECCCCCEECCEEEE---ECCCCCCCEEC-----CCCCCCCCEEEECCCCCEEEE
T ss_conf 68738753843307886263347887---23886666027-----516764210340377741686
No 6
>PRK10218 GTP-binding protein; Provisional
Probab=100.00 E-value=0 Score=1101.55 Aligned_cols=535 Identities=28% Similarity=0.470 Sum_probs=472.6
Q ss_pred HHHCEEEEEECCCCCCHHHHHHHHHHHCCCCCCC-CCCCEEECCCHHHHHHCCEEEEEEEEEEEECCCCCEEEEEEEECC
Q ss_conf 5253179998013898778899999982980544-443113058677987195052327999974378843899996178
Q gi|254780321|r 8 LSRIRNFSIVAHIDHGKSTLADRFIQHCRGLTER-EMSSQVLDNMDIERERGITIKAQTVRLNYTSTDAKDYQLNLIDTP 86 (606)
Q Consensus 8 ~~~IRN~~IiaHvDhGKTTL~d~lL~~tg~i~~~-~~~~~vlD~~~~EreRGITIka~~~~~~~~~~~~~~y~iNlIDTP 86 (606)
+++|||||||||||||||||+||||++||++.++ +..+|+||+|++||||||||+|+++++.| ++|+|||||||
T Consensus 2 ie~IRNiaIIAHvDhGKTTL~d~lL~~tG~~~~~~~~~~~~mD~~~~ErERGITI~a~~~~~~~-----~~~~iNiIDTP 76 (607)
T PRK10218 2 IEKLRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKW-----NDYRINIVDTP 76 (607)
T ss_pred CCCCCEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCHHHCCCCCHHHHHCCCEEEEEEEEEEE-----CCEEEEEECCC
T ss_conf 7544248999756889889999999972898644541120147868898759726230489960-----87899786599
Q ss_pred CCCHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCHHHHHHHHH-HHHHHH-
Q ss_conf 730027999999973026899998687886558999999997099679983267887532113388877555-322321-
Q gi|254780321|r 87 GHVDFTYEVSRSLSACEGSLLVVDATQGVEAQTLANVYQAIDNNHEIITVLNKADLPSADPDRVKKQIEETI-GISTED- 164 (606)
Q Consensus 87 GH~DF~~EV~r~l~a~dgaiLvVdA~~Gvq~QT~~~~~~A~~~~l~~I~viNKiD~~~A~~e~v~~ei~~~~-g~~~~~- 164 (606)
||+||+|||+|+|+|||||||||||++||||||+++|++|+++||++|+||||||+|+|+|++|.+|++|+| ++++++
T Consensus 77 GH~DF~gEVeR~L~~~DGalLvVDA~eGv~pQT~~V~~~Al~~~l~~IvvINKiDr~~A~~~~V~~ei~dlfi~L~a~de 156 (607)
T PRK10218 77 GHADFGGEVERVMSMVDSVLLVVDAFDGPMPQTRFVTKKAFAYGLKPIVVINKVDRPGARPDWVVDQVFDLFVNLDATDE 156 (607)
T ss_pred CCCCCHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCHH
T ss_conf 85430148897897668489999788786245899999999879975997216676655357899999988740498567
Q ss_pred -----HHHHHHHCCC----------CCCHHHHHHHHHHHCCCCHHHHHCCCCCCCCCEEECCCCCEEEEEEECCCCCCCC
Q ss_conf -----0001110022----------3200678776321000111122012331012101147572599998169873558
Q gi|254780321|r 165 -----ALLVSAKTGE----------GIPLLLERIVQQLPSPTSPEGANAPLKALLIDSWYNSYLGVMVLVRIINGQLTKG 229 (606)
Q Consensus 165 -----ii~vSAktG~----------GV~~LLd~Iv~~iP~P~~~~~~~~Pl~alVfds~~D~~~G~I~~~RV~sG~lk~G 229 (606)
++++||++|. ++.+|||+|++++|+|.+ ++++||+|+||++|||+|+|+|+++||++|++++|
T Consensus 157 qld~Pi~~asa~~G~a~~~~~~~~~dl~pLldaIv~~IPaP~~--d~d~Plq~lV~~ldyD~YvGrI~igRV~sG~ik~G 234 (607)
T PRK10218 157 QLDFPIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHVPAPDV--DLDGPFQMQISQLDYNSYVGVIGIGRIKRGKVKPN 234 (607)
T ss_pred HHCCHHHHHHHHCCEECCCHHHHHHHCCHHHHHHHHHCCCCCC--CCCCCCCCEECCCCCCCCCCEEEEEEEECCEECCC
T ss_conf 7444355655406501268234333136088999854879899--98888410101123567676489999965748589
Q ss_pred CEEEEECCCCCCCCCCCC---C-CCCCEEEEHHCCCCCHHHHHHCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCEEE
Q ss_conf 458873355642101222---3-355412401012471233220110024444542000466785323645522221266
Q gi|254780321|r 230 QSIRLMGTNAKYQVERIG---I-LTPKMIDIEALYPGEIGVMIASIKEVSHTRVGDTITDDSSPTTSALPGFKPIQPVVF 305 (606)
Q Consensus 230 d~I~~~~~g~~~~v~~ig---~-~~~~~~~v~~l~aGdVG~ii~gik~l~~~~vGDTl~~~~~p~~~~Lp~~~~~~P~v~ 305 (606)
|+|.+++++.+++..+++ . .+.++.+++++.||||. ++++++++.||||||++++| +|||+++.++|+++
T Consensus 235 d~V~~~~~~g~~~~~kV~kl~~~~gl~r~ev~~a~AGDIV----AIaGl~d~~iGDTl~d~~~p--~~Lp~~~i~ePtvs 308 (607)
T PRK10218 235 QQVTIIDSEGKTRNAKVGKVLGHLGLERIETDLAEAGDIV----AITGLGELNISDTVCDTQNV--EALPALSVDEPTVS 308 (607)
T ss_pred CEEEEECCCCEEEEEEEEEEEECCCCCCCCCCEECCEEEE----EEECCCCCCCCCEECCCCCC--CCCCCCCCCCCCCC
T ss_conf 8436632796388434679951157774005465240599----99423357777652157765--56766677899651
Q ss_pred EEECCCCHHHH----------HHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHHHCCCEEEEE
Q ss_conf 42126770245----------78899998886411221112567600042028996376789888988866449506973
Q gi|254780321|r 306 CGLFPVDATQF----------ENLRTAINKLRLNDASFSFELENSTALGFGFRCGFLGLLHLEIIQERLEREFSLNLIGT 375 (606)
Q Consensus 306 ~~i~p~~~~d~----------~~L~~aL~kL~~~D~sl~~e~Ets~aLg~Gfr~gglG~LHLeVi~eRL~rEfg~ev~~t 375 (606)
| .|++|+++| .+++++|.|+.++|+||++++..+ + .+|||||||+|||+|++|||||| |+|+++|
T Consensus 309 m-~f~vn~sPfaG~egk~~t~r~i~erL~ke~~~nvsl~vee~~~-~--~~f~v~grGeLHLeIliErmrRE-G~El~vs 383 (607)
T PRK10218 309 M-FFCVNTSPFCGKEGKFVTSRQILDRLNKELVHNVALRVEETED-A--DAFRVSGRGELHLSVLIENMRRE-GFELAVS 383 (607)
T ss_pred E-EEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEECCC-C--CEEEEECCHHHHHHHHHHHHHHC-CCEEEEC
T ss_conf 5-7611687766644542038999999987653076268870688-8--64797044287899999998645-8479973
Q ss_pred CCCCCEEEEEECCCEEECCCHHHCCCHHHHHHHHCCEEEEEEEECCCCCHHHHHHHHHHHHEEECCCCCC-CEEEEEEEE
Q ss_conf 7823303353156454126966625867788862326999998083100038999886300142443368-369999996
Q gi|254780321|r 376 SPSVVYELYMHDGSMQKLSNPIDMPEVTKIAELREPWIQVTIITPNEYLGSILKLCQERRGIQIDMSHLD-NRAMIVYEL 454 (606)
Q Consensus 376 ~P~V~Ykv~~~dG~~~~Vd~p~~~p~~~~i~~i~EPi~~~~I~~P~ey~G~Vm~~l~~RRG~~~~m~~~~-~~~~i~~~v 454 (606)
+|+|+|| ..||+. +|||++++|++|+||+|+||++|++|||++.+|+|.+ +|++|+|++
T Consensus 384 ~P~Viyr--e~dG~~------------------~EP~e~~~I~vP~ey~G~Vme~l~~RrG~~~~M~~~~~grv~L~f~i 443 (607)
T PRK10218 384 RPKVIFR--EIDGRK------------------QEPYENVTLDVEEQHQGSVMQALGERKGDLKNMNPDGKGRVRLDYVI 443 (607)
T ss_pred CCCEEEE--ECCCCC------------------CCCEEEEEEEECHHHHHHHHHHHHHHCCEEEEEEECCCCEEEEEEEC
T ss_conf 8836899--138946------------------18707999972625549999998851779975589899979999977
Q ss_pred CHHHHHHHHHHHHHHHCCCEEEEEEEECCCEE---CCE--EEEEEEECCCCCCEEEEEEEHHHHHHHHHHHHHHHHHCCC
Q ss_conf 04333220468767635741888985435464---366--7974886288243568742157799999999999874087
Q gi|254780321|r 455 PLNEVIFDFYDRLKSVSKGYASFDYNVIDYRD---SDL--VKLTILVNNETIDALSILVHRSVSEKRGRGICEKLKNLIP 529 (606)
Q Consensus 455 Pl~Eli~~f~~~LkS~T~G~as~~ye~~~Y~~---~dl--vk~~ilin~~~vdals~i~h~~~a~~~gr~~~~~L~~~ip 529 (606)
|+|+|| ||+++|+|+|+|+|+|++.|.+|+| +++ ++.+.||+.+. |.++.|+|..+++
T Consensus 444 PsRgLi-G~r~~~lt~TrG~g~~~~~f~~y~~~~~g~~~~r~~G~lis~~~----------------g~~t~yal~~lq~ 506 (607)
T PRK10218 444 PSRGLI-GFRSEFMTMTSGTGLLYSTFSHYDDVRPGEVGQRQNGVLISNGQ----------------GKAVAFALFGLQD 506 (607)
T ss_pred CCHHHC-CCHHHEEECCCCEEEEEECCCCCCCCCCCCCCCCCCEEEEECCC----------------CEEHHHHHHHHHH
T ss_conf 653543-87254042477418998602256778788756666513797577----------------6178987753875
Q ss_pred HH-HCCCCCEEEECCEEEEEECCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHC-CCEECCHHHHHHHHCCCC
Q ss_conf 01-02002204564788974125642032032301777347877568988421787510-774458899999742468
Q gi|254780321|r 530 QQ-MFQIAIQAAIGGRIIARETVKARRKDVTAKCYGGDITRKRKLLEKQKEGKKRMRRF-GRVDIPQSAFISILKTDN 605 (606)
Q Consensus 530 rq-~F~v~iqa~~~~~iiare~i~~~rkdvt~kcygGd~trk~KLl~~qk~GKkrmk~~-g~v~ip~~af~~~l~~~~ 605 (606)
|. +|.-|...+|+|||||. +++.+|+.+| ++|.|||+|+|++|+...-.+ --....-|-.++++..|+
T Consensus 507 rg~lfv~pg~~vy~GmivGe---~~r~~dl~vN-----~~k~k~ltn~r~~~~d~~~~l~p~~~~sle~~~~~i~~de 576 (607)
T PRK10218 507 RGKLFLGHGAEVYEGQIIGI---HSRSNDLTVN-----CLTGKKLTNMRASGTDEAVVLVPPIRMTLEQALEFIDDDE 576 (607)
T ss_pred CCCEEECCCCCEECCEEEEE---ECCCCCCEEC-----CCCCCCCCCCCCCCCCCCCEECCCCCCCHHHHHHHCCCCE
T ss_conf 45367369996688758676---0786773244-----5545445255455766562017984079999985357775
No 7
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=100.00 E-value=0 Score=963.29 Aligned_cols=514 Identities=32% Similarity=0.519 Sum_probs=464.9
Q ss_pred HHHCEEEEEECCCCCCHHHHHHHHHHHCCCCCCCC-CCCEEECCCHHHHHHCCEEEEEEEEEEEECCCCCEEEEEEEECC
Q ss_conf 52531799980138987788999999829805444-43113058677987195052327999974378843899996178
Q gi|254780321|r 8 LSRIRNFSIVAHIDHGKSTLADRFIQHCRGLTERE-MSSQVLDNMDIERERGITIKAQTVRLNYTSTDAKDYQLNLIDTP 86 (606)
Q Consensus 8 ~~~IRN~~IiaHvDhGKTTL~d~lL~~tg~i~~~~-~~~~vlD~~~~EreRGITIka~~~~~~~~~~~~~~y~iNlIDTP 86 (606)
+.+|||||||||||||||||+|+||.++|++.+++ ..+++||++++||||||||.|+++++.| ++|+||++|||
T Consensus 2 ~~~iRNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~-----~~~~INIvDTP 76 (603)
T COG1217 2 MEDIRNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNY-----NGTRINIVDTP 76 (603)
T ss_pred CCCCCEEEEEEEECCCCCHHHHHHHHHCCCCCCCCCHHHHHCCCCCHHHHCCCEEEECCCEEEC-----CCEEEEEECCC
T ss_conf 7665306899984488102899998731654456520144037642344349389851524620-----88389876589
Q ss_pred CCCHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCHHHHHHHHH-HHHH--H
Q ss_conf 730027999999973026899998687886558999999997099679983267887532113388877555-3223--2
Q gi|254780321|r 87 GHVDFTYEVSRSLSACEGSLLVVDATQGVEAQTLANVYQAIDNNHEIITVLNKADLPSADPDRVKKQIEETI-GIST--E 163 (606)
Q Consensus 87 GH~DF~~EV~r~l~a~dgaiLvVdA~~Gvq~QT~~~~~~A~~~~l~~I~viNKiD~~~A~~e~v~~ei~~~~-g~~~--~ 163 (606)
||+||+|||+|.|+|+||+||||||.+|+||||++++.+|+++||++|+||||||+|+|+|+||.+|++|+| ++.+ +
T Consensus 77 GHADFGGEVERvl~MVDgvlLlVDA~EGpMPQTrFVlkKAl~~gL~PIVVvNKiDrp~Arp~~Vvd~vfDLf~~L~A~de 156 (603)
T COG1217 77 GHADFGGEVERVLSMVDGVLLLVDASEGPMPQTRFVLKKALALGLKPIVVINKIDRPDARPDEVVDEVFDLFVELGATDE 156 (603)
T ss_pred CCCCCCCHHHHHHHHCCEEEEEEECCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCHH
T ss_conf 86776625451143233489999755588873144489999749984899967789998878999999999998199745
Q ss_pred H----HHHHHHHCCC----------CCCHHHHHHHHHHHCCCCHHHHHCCCCCCCCCEEECCCCCEEEEEEECCCCCCCC
Q ss_conf 1----0001110022----------3200678776321000111122012331012101147572599998169873558
Q gi|254780321|r 164 D----ALLVSAKTGE----------GIPLLLERIVQQLPSPTSPEGANAPLKALLIDSWYNSYLGVMVLVRIINGQLTKG 229 (606)
Q Consensus 164 ~----ii~vSAktG~----------GV~~LLd~Iv~~iP~P~~~~~~~~Pl~alVfds~~D~~~G~I~~~RV~sG~lk~G 229 (606)
+ ++|+||+.|. .+++|+|+|++++|+|.+ +.++|||++|+...|++|+|+|.++||++|++|+|
T Consensus 157 QLdFPivYAS~~~G~a~~~~~~~~~~m~pLfe~I~~hvp~P~~--~~d~PlQ~qvt~Ldyn~y~GrIgigRi~~G~vk~~ 234 (603)
T COG1217 157 QLDFPIVYASARNGTASLDPEDEADDMAPLFETILDHVPAPKG--DLDEPLQMQVTQLDYNSYVGRIGIGRIFRGTVKPN 234 (603)
T ss_pred HCCCEEEEEECCCCEECCCCCCCCCCHHHHHHHHHHHCCCCCC--CCCCCEEEEEEEECCCCCCCEEEEEEEECCCCCCC
T ss_conf 5787079854147510158655555316899999975899989--99888078998522445452268999852725489
Q ss_pred CEEEEECCCCC---CCCCCC-CCCCCCEEEEHHCCCCCHHHHHHCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCEEE
Q ss_conf 45887335564---210122-23355412401012471233220110024444542000466785323645522221266
Q gi|254780321|r 230 QSIRLMGTNAK---YQVERI-GILTPKMIDIEALYPGEIGVMIASIKEVSHTRVGDTITDDSSPTTSALPGFKPIQPVVF 305 (606)
Q Consensus 230 d~I~~~~~g~~---~~v~~i-g~~~~~~~~v~~l~aGdVG~ii~gik~l~~~~vGDTl~~~~~p~~~~Lp~~~~~~P~v~ 305 (606)
|++.++..+.+ .+++++ ++++.++.+++++.|||| ..+.++.++.+|||+|++++| +|||.+..++|+++
T Consensus 235 q~V~~i~~~g~~~~gri~kll~f~GL~R~ei~eA~AGDI----vaiaG~~~~~igdTi~d~~~~--~aLp~l~iDePTls 308 (603)
T COG1217 235 QQVALIKSDGTTENGRITKLLGFLGLERIEIEEAEAGDI----VAIAGLEDINIGDTICDPDNP--EALPALSVDEPTLS 308 (603)
T ss_pred CEEEEECCCCCEEEEEEEEEEECCCEEEEEHHHCCCCCE----EEECCCCCCCCCCCCCCCCCC--CCCCCCCCCCCCEE
T ss_conf 768998479947755776665505423335001255678----998276435543413587776--67887336898468
Q ss_pred EEECCCCHHHHH----------HHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHHHCCCEEEEE
Q ss_conf 421267702457----------8899998886411221112567600042028996376789888988866449506973
Q gi|254780321|r 306 CGLFPVDATQFE----------NLRTAINKLRLNDASFSFELENSTALGFGFRCGFLGLLHLEIIQERLEREFSLNLIGT 375 (606)
Q Consensus 306 ~~i~p~~~~d~~----------~L~~aL~kL~~~D~sl~~e~Ets~aLg~Gfr~gglG~LHLeVi~eRL~rEfg~ev~~t 375 (606)
| .|.+|+|+|. +++++|.|..+.+.||++|+..+.. .|+|||+|||||.|++|.|||| |+|+.++
T Consensus 309 M-tf~vN~SPfAG~EGk~vTSR~i~dRL~~El~~NValrVe~t~~pd---~f~VsGRGELhLsILiE~MRRE-GfEl~Vs 383 (603)
T COG1217 309 M-TFSVNDSPFAGKEGKFVTSRQIRDRLNKELETNVALRVEETESPD---AFEVSGRGELHLSILIENMRRE-GFELQVS 383 (603)
T ss_pred E-EEEECCCCCCCCCCCEEEHHHHHHHHHHHHHHCEEEEEEECCCCC---EEEEECCCEEEHHHHHHHHHHC-CEEEEEC
T ss_conf 9-999568877776785655899999999876416359987369997---3798056444578888876423-4177725
Q ss_pred CCCCCEEEEEECCCEEECCCHHHCCCHHHHHHHHCCEEEEEEEECCCCCHHHHHHHHHHHHEEECCCCCC-CEEEEEEEE
Q ss_conf 7823303353156454126966625867788862326999998083100038999886300142443368-369999996
Q gi|254780321|r 376 SPSVVYELYMHDGSMQKLSNPIDMPEVTKIAELREPWIQVTIITPNEYLGSILKLCQERRGIQIDMSHLD-NRAMIVYEL 454 (606)
Q Consensus 376 ~P~V~Ykv~~~dG~~~~Vd~p~~~p~~~~i~~i~EPi~~~~I~~P~ey~G~Vm~~l~~RRG~~~~m~~~~-~~~~i~~~v 454 (606)
.|+|+|| ..||.. +|||+.++|++|++|+|.||+.++.|+|++.+|.+.+ ||++++|.+
T Consensus 384 rP~Vi~k--eidG~~------------------~EP~E~v~iDv~ee~~G~Vie~lg~RKgem~~M~~~g~G~~Rlef~i 443 (603)
T COG1217 384 RPEVIIK--EIDGVK------------------CEPFEEVTIDVPEEHQGAVIEKLGERKGEMKDMAPDGKGRVRLEFVI 443 (603)
T ss_pred CCEEEEE--ECCCCC------------------CCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEC
T ss_conf 8659999--238846------------------68501378637423201899987653576751535899859999972
Q ss_pred CHHHHHHHHHHHHHHHCCCEEEEEEEECCCEEC--CE--EEEEEEECCCCCCEEEEEEEHHHHHHHHHHHHHHHHHCCCH
Q ss_conf 043332204687676357418889854354643--66--79748862882435687421577999999999998740870
Q gi|254780321|r 455 PLNEVIFDFYDRLKSVSKGYASFDYNVIDYRDS--DL--VKLTILVNNETIDALSILVHRSVSEKRGRGICEKLKNLIPQ 530 (606)
Q Consensus 455 Pl~Eli~~f~~~LkS~T~G~as~~ye~~~Y~~~--dl--vk~~ilin~~~vdals~i~h~~~a~~~gr~~~~~L~~~ipr 530 (606)
|.++|| ||+++|.|+|+|+|.+++.|++|+|- ++ +++++||+.+.+.|.+ |+|.++++|
T Consensus 444 PaRGLI-GfrteFlt~TrG~Gi~n~~F~~Y~p~~g~i~~R~nGvLiS~~~G~a~~----------------yal~~lqdR 506 (603)
T COG1217 444 PARGLI-GFRTEFLTMTRGTGIMNHSFDHYRPVKGEIGGRHNGVLISNETGKAVA----------------YALFNLQDR 506 (603)
T ss_pred CCCCEE-CCCHHEEECCCCCEEEEECCCCCCCCCCCCCCCCCCEEEECCCCCCHH----------------HHHHHHHHC
T ss_conf 476501-021110221456434321101345555654555451599768984347----------------655358753
Q ss_pred H-HCCCCCEEEECCEEEEEECCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 1-02002204564788974125642032032301777347877568988421787
Q gi|254780321|r 531 Q-MFQIAIQAAIGGRIIARETVKARRKDVTAKCYGGDITRKRKLLEKQKEGKKRM 584 (606)
Q Consensus 531 q-~F~v~iqa~~~~~iiare~i~~~rkdvt~kcygGd~trk~KLl~~qk~GKkrm 584 (606)
. +|.-|.+.+|+||||+ +|++.+|+++||. +.|||+|++++||.--
T Consensus 507 G~~Fi~pG~~vYeGmiiG---~hsR~nDL~VN~~-----k~K~LTN~Rasg~Dea 553 (603)
T COG1217 507 GKLFIEPGTKVYEGMIIG---EHSRDNDLTVNVL-----KGKKLTNMRASGKDEA 553 (603)
T ss_pred CCEEECCCCCEEEEEEEE---EECCCCCCEECCC-----CCCCCCCCCCCCCCCC
T ss_conf 756645997265016985---3067567134242-----3442312104687622
No 8
>PRK00007 elongation factor G; Reviewed
Probab=100.00 E-value=0 Score=904.87 Aligned_cols=467 Identities=31% Similarity=0.483 Sum_probs=414.3
Q ss_pred CCCCHHHCEEEEEECCCCCCHHHHHHHHHHHCCCCCCCC---CCCEEECCCHHHHHHCCEEEEEEEEEEEECCCCCEEEE
Q ss_conf 899852531799980138987788999999829805444---43113058677987195052327999974378843899
Q gi|254780321|r 4 KPTPLSRIRNFSIVAHIDHGKSTLADRFIQHCRGLTERE---MSSQVLDNMDIERERGITIKAQTVRLNYTSTDAKDYQL 80 (606)
Q Consensus 4 ~~~p~~~IRN~~IiaHvDhGKTTL~d~lL~~tg~i~~~~---~~~~vlD~~~~EreRGITIka~~~~~~~~~~~~~~y~i 80 (606)
+++|++|||||||+||+|||||||+|+||+.+|.+.+.+ .++++||++++||||||||+|+++++.|. .+|+|
T Consensus 3 ~~~~ie~IRNi~IiaHvd~GKTTL~e~lL~~sg~i~~~G~v~~g~t~~D~~~~E~eRgITI~s~~~s~~~~----~~~~i 78 (693)
T PRK00007 3 RTTPLERYRNIGIMAHIDAGKTTTTERILFYTGVSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWK----DGHRI 78 (693)
T ss_pred CCCCHHHCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCEECCCCCCCCCCHHHHHCCCCEEECEEEEEEC----CCEEE
T ss_conf 88966787099999169999899999999966984658424389855678288997698873222548826----97389
Q ss_pred EEEECCCCCHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 99617873002799999997302689999868788655899999999709967998326788753211338887755532
Q gi|254780321|r 81 NLIDTPGHVDFTYEVSRSLSACEGSLLVVDATQGVEAQTLANVYQAIDNNHEIITVLNKADLPSADPDRVKKQIEETIGI 160 (606)
Q Consensus 81 NlIDTPGH~DF~~EV~r~l~a~dgaiLvVdA~~Gvq~QT~~~~~~A~~~~l~~I~viNKiD~~~A~~e~v~~ei~~~~g~ 160 (606)
||||||||+||++||+|||++|||||+||||.+|||+||+.+|+.|.+.++|+|+||||||++.||++.+.++|.+.++.
T Consensus 79 NlIDTPGHvDF~~Ev~~aLrv~DgAvlVvDav~GV~~qT~~v~r~a~~~~lp~i~fINK~Dr~~ad~~~~l~~i~~~l~~ 158 (693)
T PRK00007 79 NIIDTPGHVDFTIEVERSLRVLDGAVAVFCAVGGVEPQSETVWRQADKYKVPRIVFVNKMDRTGADFLRVVEQIKDRLGA 158 (693)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHHCC
T ss_conf 99919797524899999999858689999889887777999999998759896999979778999989999999998599
Q ss_pred H-------------------------------------------------------------------------------
Q ss_conf 2-------------------------------------------------------------------------------
Q gi|254780321|r 161 S------------------------------------------------------------------------------- 161 (606)
Q Consensus 161 ~------------------------------------------------------------------------------- 161 (606)
.
T Consensus 159 ~~~~~~~pi~~~~~f~g~vdl~~~~~~~~~~~~~g~~~~~~~~p~~~~~~~~~~r~~l~e~vae~dd~lle~yl~~~~~~ 238 (693)
T PRK00007 159 NPVPIQLPIGAEDDFKGVVDLVKMKAIIWDDDDLGTTFEYEEIPADLKDKAEEYREKLVEAAAEADEELMEKYLEGEELT 238 (693)
T ss_pred CEEEEEEEECCCCCCCCEEEEEEEEEEECCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCC
T ss_conf 76899840024776433033000013321333468713770185899999999999999999854999999985578899
Q ss_pred HH-------------H---HHHHHHHCCCCCCHHHHHHHHHHHCCCC------------------HHHHHCCCCCCCCCE
Q ss_conf 32-------------1---0001110022320067877632100011------------------112201233101210
Q gi|254780321|r 162 TE-------------D---ALLVSAKTGEGIPLLLERIVQQLPSPTS------------------PEGANAPLKALLIDS 207 (606)
Q Consensus 162 ~~-------------~---ii~vSAktG~GV~~LLd~Iv~~iP~P~~------------------~~~~~~Pl~alVfds 207 (606)
.+ + ++++||.+|.||++|||+|++++|+|.. ..++++||.|+|||+
T Consensus 239 ~~el~~~lr~~~~~~~~~Pv~~gsa~~~~Gv~~LLd~i~~~lPsP~e~~~~~~~~~~~~~~~~~~~~~~~~pl~a~vfK~ 318 (693)
T PRK00007 239 EEEIKAALRKGTLANEIVPVLCGSAFKNKGVQPMLDAVVDYLPSPLDVPAIKGILPDGEEEEVERKASDDEPFSALAFKI 318 (693)
T ss_pred HHHHHHHHHHHHHHCCEEEHHCCCCCCCCCHHHHHHHHHHHCCCCCCCCCEECCCCCCCCCEEEECCCCCCCCEEEEEEE
T ss_conf 99999999998872765661026543487899999999986799212565002068987403564269877714687556
Q ss_pred EECCCCCEEEEEEECCCCCCCCCEEEEECCCCCCCCCCCCCCCC-CEEEEHHCCCCCHHHHHHCCCCCCCCCCCCEECCC
Q ss_conf 11475725999981698735584588733556421012223355-41240101247123322011002444454200046
Q gi|254780321|r 208 WYNSYLGVMVLVRIINGQLTKGQSIRLMGTNAKYQVERIGILTP-KMIDIEALYPGEIGVMIASIKEVSHTRVGDTITDD 286 (606)
Q Consensus 208 ~~D~~~G~I~~~RV~sG~lk~Gd~I~~~~~g~~~~v~~ig~~~~-~~~~v~~l~aGdVG~ii~gik~l~~~~vGDTl~~~ 286 (606)
..|||.|+++|+|||||+|+.||.|++...++++++.+++.+.+ ++.+++++.||||+.+ .+++++.+|||||++
T Consensus 319 ~~dp~~G~ls~~RV~SGtl~~g~~v~n~~~~~~e~i~~l~~~~g~~~~~v~~~~AGdIvai----~gL~~~~tgdTl~~~ 394 (693)
T PRK00007 319 MTDPFVGKLTFFRVYSGVLNSGSYVLNSTKGKKERIGRILQMHANKREEIKEVRAGDIAAA----VGLKDTTTGDTLCDP 394 (693)
T ss_pred EECCCCCCEEEEEECCCCCCCCCEEECCCCCCCCCCCCEEEEECCCCCEEEEECCCCEEEE----ECCCCEEECCCCCCC
T ss_conf 7748998268898225723689863146543211356338985588516007727964898----533430525531476
Q ss_pred CCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCC--CCCCCCCCCEEEEEECCHHHHHHHHHHH
Q ss_conf 67853236455222212664212677024578899998886411221112--5676000420289963767898889888
Q gi|254780321|r 287 SSPTTSALPGFKPIQPVVFCGLFPVDATQFENLRTAINKLRLNDASFSFE--LENSTALGFGFRCGFLGLLHLEIIQERL 364 (606)
Q Consensus 287 ~~p~~~~Lp~~~~~~P~v~~~i~p~~~~d~~~L~~aL~kL~~~D~sl~~e--~Ets~aLg~Gfr~gglG~LHLeVi~eRL 364 (606)
+++. .++.+.+|+|+++++++|.+++|.++|.++|.||..+||+|+++ +||++.+ ++|+|||||||+++||
T Consensus 395 ~~~~--~l~~~~~p~Pv~~~aieP~~~~d~~kL~~aL~~L~~eDPsl~v~~~eetge~v-----l~g~GElHLei~~~rL 467 (693)
T PRK00007 395 DNPI--ILERMEFPEPVISVAVEPKTKADQEKMGIALGKLAEEDPSFRVSTDEESGQTI-----IAGMGELHLDIIVDRM 467 (693)
T ss_pred CCCC--CCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCEE-----EECCCHHHHHHHHHHH
T ss_conf 7765--34544589864316885497677999999999878449738999907887189-----9857899999999999
Q ss_pred HHHCCCEEEEECCCCCEE--------------------------------------------------------------
Q ss_conf 664495069737823303--------------------------------------------------------------
Q gi|254780321|r 365 EREFSLNLIGTSPSVVYE-------------------------------------------------------------- 382 (606)
Q Consensus 365 ~rEfg~ev~~t~P~V~Yk-------------------------------------------------------------- 382 (606)
+|+||+|+.++.|.|+||
T Consensus 468 ~~~f~vev~~~~P~V~yrETI~~~~~~~~~~~kqsgg~gq~~~v~i~~eP~~~g~g~~f~~~i~gg~ip~~~~~av~~G~ 547 (693)
T PRK00007 468 KREFKVEANVGKPQVAYRETIRKSVEVEGKFKKQSGGRGQYGHVVIELEPLEPGKGYEFENKIVGGVVPKEYIPAVDKGI 547 (693)
T ss_pred HHHHCCCEEECCCCEEEEEEECCCCEEEEEEEEECCCCCCEEEEEEEEECCCCCCCCEEEECCCCCCCCHHHHHHHHHHH
T ss_conf 87709834604882368987426410257998852887726799999953888978557302456767788878899999
Q ss_pred ------------------EEEECCCEEECCC-HHHCCCHHHHH----------HHHCCEEEEEEEECCCCCHHHHHHHHH
Q ss_conf ------------------3531564541269-66625867788----------862326999998083100038999886
Q gi|254780321|r 383 ------------------LYMHDGSMQKLSN-PIDMPEVTKIA----------ELREPWIQVTIITPNEYLGSILKLCQE 433 (606)
Q Consensus 383 ------------------v~~~dG~~~~Vd~-p~~~p~~~~i~----------~i~EPi~~~~I~~P~ey~G~Vm~~l~~ 433 (606)
+++.||++|.||| +..|.-++..+ .++|||+.++|.||++|+|+||++|++
T Consensus 548 ~~a~~~GpL~g~pv~~vkv~l~dg~~h~vds~~~af~~A~~~a~~~a~~~a~p~LlEPi~~veI~~p~~~~G~V~~dL~~ 627 (693)
T PRK00007 548 QEAMKSGVLAGYPVVDVKVTLFDGSYHDVDSSEMAFKIAGSMAFKEAAKKANPVLLEPIMKVEVVTPEDYMGDVIGDLNS 627 (693)
T ss_pred HHHHHHCCCCCCCEEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEECCCEEEEEEECHHHHHHHHHHHHH
T ss_conf 99997098257854315999980675578874689999999999999986698897683799999488998999999987
Q ss_pred HHHEEECCCCCCCEEEEEEEECHHHHHHHHHHHHHHHCCCEEEEEEEECCCEE
Q ss_conf 30014244336836999999604333220468767635741888985435464
Q gi|254780321|r 434 RRGIQIDMSHLDNRAMIVYELPLNEVIFDFYDRLKSVSKGYASFDYNVIDYRD 486 (606)
Q Consensus 434 RRG~~~~m~~~~~~~~i~~~vPl~Eli~~f~~~LkS~T~G~as~~ye~~~Y~~ 486 (606)
|||++.+|+..++...+.+.+|++|+ +||.++|+|+|+|+|+|+++|+||++
T Consensus 628 RRG~i~~~~~~~~~~~I~a~vP~~E~-~gy~~~LRs~T~G~g~~~~~F~~y~~ 679 (693)
T PRK00007 628 RRGQIQGMEDRGGAKVIRAEVPLSEM-FGYATDLRSMTQGRATYSMEFDHYEE 679 (693)
T ss_pred CCCEEECEEECCCCEEEEEEECHHHH-HCHHHHHHHHCCCCEEEEEEECCCCC
T ss_conf 69887462633990999999887886-28579978538893589999486643
No 9
>PRK13351 elongation factor G; Reviewed
Probab=100.00 E-value=0 Score=860.96 Aligned_cols=466 Identities=32% Similarity=0.468 Sum_probs=409.4
Q ss_pred CCCHHHCEEEEEECCCCCCHHHHHHHHHHHCCCCCCCC---CCCEEECCCHHHHHHCCEEEEEEEEEEEECCCCCEEEEE
Q ss_conf 99852531799980138987788999999829805444---431130586779871950523279999743788438999
Q gi|254780321|r 5 PTPLSRIRNFSIVAHIDHGKSTLADRFIQHCRGLTERE---MSSQVLDNMDIERERGITIKAQTVRLNYTSTDAKDYQLN 81 (606)
Q Consensus 5 ~~p~~~IRN~~IiaHvDhGKTTL~d~lL~~tg~i~~~~---~~~~vlD~~~~EreRGITIka~~~~~~~~~~~~~~y~iN 81 (606)
.+|+++|||||||||+|||||||+|+||+.+|.+++++ .++++||++++||||||||||+.+++.| ++|+||
T Consensus 2 ~~~~e~IRNi~IiaHvd~GKTTL~d~Ll~~~g~i~~~g~v~~g~t~~D~~~~E~eRgITikss~~sl~~-----~~~~iN 76 (687)
T PRK13351 2 EMPLMQIRNIGIMAHIDAGKTTLTERILFYTGKIHKMGSVEDGNTVSDWMPQEQERGISIESAAATCDW-----KNHRIN 76 (687)
T ss_pred CCCHHHCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHCCCCEEEEEEEEEE-----CCEEEE
T ss_conf 998689308999917998989999999997499875871547874478829999749877621599988-----998999
Q ss_pred EEECCCCCHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 96178730027999999973026899998687886558999999997099679983267887532113388877555322
Q gi|254780321|r 82 LIDTPGHVDFTYEVSRSLSACEGSLLVVDATQGVEAQTLANVYQAIDNNHEIITVLNKADLPSADPDRVKKQIEETIGIS 161 (606)
Q Consensus 82 lIDTPGH~DF~~EV~r~l~a~dgaiLvVdA~~Gvq~QT~~~~~~A~~~~l~~I~viNKiD~~~A~~e~v~~ei~~~~g~~ 161 (606)
|||||||+||++||++||++|||||+||||.+|||+||+.+|+.|.+.++|+|+|||||||..++++.+.+++++.++..
T Consensus 77 lIDTPGHvDF~~Ev~~aLr~~DgallVVDaveGv~~qT~~v~r~a~~~~lp~il~iNK~DR~~~d~~~~l~~i~~~l~~~ 156 (687)
T PRK13351 77 LIDTPGHIDFTGEVERSLRVLDGAVVVIDAVTGVQPQTETVWEQADKYKIPRLIFINKMDRVGADLFDVLEDIEEKFGKR 156 (687)
T ss_pred EEECCCCCCHHHHHHHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCC
T ss_conf 98097974309999999998786899997899986889999999998799859999797789987667788999984896
Q ss_pred H-------------------------------------------------------------------------------
Q ss_conf 3-------------------------------------------------------------------------------
Q gi|254780321|r 162 T------------------------------------------------------------------------------- 162 (606)
Q Consensus 162 ~------------------------------------------------------------------------------- 162 (606)
+
T Consensus 157 ~~~~~~p~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~dd~lle~~l~~~~~~~ 236 (687)
T PRK13351 157 PLPLQLPIGSGDSFEGVVDLITEKELHFKEGDGGDTVEERPIPEELLEEVASAREKLIDALLEFDDELLELYLEGEEITA 236 (687)
T ss_pred EEEEEECCCCCCCCCCEEEECCCHHHCCCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCH
T ss_conf 47786001356555641663110122002455685057725628889999999999999998308999999874887889
Q ss_pred -------------HH---HHHHHHHCCCCCCHHHHHHHHHHHCCCC----------------HHHHHCCCCCCCCCEEEC
Q ss_conf -------------21---0001110022320067877632100011----------------112201233101210114
Q gi|254780321|r 163 -------------ED---ALLVSAKTGEGIPLLLERIVQQLPSPTS----------------PEGANAPLKALLIDSWYN 210 (606)
Q Consensus 163 -------------~~---ii~vSAktG~GV~~LLd~Iv~~iP~P~~----------------~~~~~~Pl~alVfds~~D 210 (606)
.+ ++..||+++.||++|||+|++++|+|.. ..++++|+.|+|||+++|
T Consensus 237 ~~l~~~l~~~~~~~~~~Pv~~gsa~~~~Gv~~LLd~i~~~lPsP~e~~~~~~~~~~~~~~~~~~~~~~p~~a~V~K~~~~ 316 (687)
T PRK13351 237 EQLRAPFRRGLRSGHLVPVLFGSALKNIGIRPLLDAVVEYLPSPLEGNPPAGSKGTEKKVLVNPDPEKPLLALVFKVQYD 316 (687)
T ss_pred HHHHHHHHHHHHHCCCCHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEC
T ss_conf 99999999999848724123030335878588999998708992103454565666640014579998708999997874
Q ss_pred CCCCEEEEEEECCCCCCCCCEEEEECCCCCCCCCCCCCCCC-CEEEEHHCCCCCHHHHHHCCCCCCCCCCCCEECCCCCC
Q ss_conf 75725999981698735584588733556421012223355-41240101247123322011002444454200046678
Q gi|254780321|r 211 SYLGVMVLVRIINGQLTKGQSIRLMGTNAKYQVERIGILTP-KMIDIEALYPGEIGVMIASIKEVSHTRVGDTITDDSSP 289 (606)
Q Consensus 211 ~~~G~I~~~RV~sG~lk~Gd~I~~~~~g~~~~v~~ig~~~~-~~~~v~~l~aGdVG~ii~gik~l~~~~vGDTl~~~~~p 289 (606)
|+.|+++|+||+||+|++||+|++.++++.+++.+++.+.+ +..+++++.||+|+ ++.+++++.+|||||+..++
T Consensus 317 ~~~g~~s~~RV~sGtL~~g~~v~~~~~~~~e~i~~l~~~~g~~~~~v~~~~aG~Iv----~i~gl~~~~~g~tl~~~~~~ 392 (687)
T PRK13351 317 PYAGKLTYLRVYQGTLRSGSQLYNGSGRKREKVGRIFRLQGNKREEVDEAKAGDIV----AVAGLKELETGDTLHDEEGN 392 (687)
T ss_pred CCCCEEEEEEEECCEECCCCEEEECCCCCEEEECCEEEECCCCCCCCCEECCCCEE----EEECCCCCCCCCEECCCCCC
T ss_conf 88975899998534545798776348983599676146426775414886779889----99587647568870589987
Q ss_pred CCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCC--CCCCCCCCCEEEEEECCHHHHHHHHHHHHHH
Q ss_conf 53236455222212664212677024578899998886411221112--5676000420289963767898889888664
Q gi|254780321|r 290 TTSALPGFKPIQPVVFCGLFPVDATQFENLRTAINKLRLNDASFSFE--LENSTALGFGFRCGFLGLLHLEIIQERLERE 367 (606)
Q Consensus 290 ~~~~Lp~~~~~~P~v~~~i~p~~~~d~~~L~~aL~kL~~~D~sl~~e--~Ets~aLg~Gfr~gglG~LHLeVi~eRL~rE 367 (606)
. +++.+..|+|+++++++|.+++|.++|.+||.+|..+||+|+++ +||++.+ ++|+||||||++++||+++
T Consensus 393 ~--~~~~~~~~~Pv~~vaieP~~~~d~~kL~~aL~~L~~eDPsl~v~~~eetge~v-----i~g~GElHLe~~l~~L~~~ 465 (687)
T PRK13351 393 V--HLEPLTFPEPVFSLAVEPERRGDEQKLAEALEKLVWEDPTLRVEEDEETGQTI-----LSGMGELHLEIALERLRRE 465 (687)
T ss_pred C--CCCCCCCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHCCCEEEEECCCCEEEE-----EECCCHHHHHHHHHHHHHH
T ss_conf 5--68999999985167688678136889999999998539837999837541887-----6588899999999988887
Q ss_pred CCCEEEEECCCCCEEEEEE-------------------------------------------------------------
Q ss_conf 4950697378233033531-------------------------------------------------------------
Q gi|254780321|r 368 FSLNLIGTSPSVVYELYMH------------------------------------------------------------- 386 (606)
Q Consensus 368 fg~ev~~t~P~V~Ykv~~~------------------------------------------------------------- 386 (606)
|++++.++.|.|+||.|+.
T Consensus 466 f~vev~vs~p~V~yrETi~~~~~~~~~~~k~~~~~~~~~~v~l~~eP~~~g~g~~~~~~~~~g~~~~~~~~aI~~G~~~a 545 (687)
T PRK13351 466 FKLEVNTGKPQVAYRETIRKMAEGVYRHKKQFGGKGQFGEVHLRVEPLERGAGFEFVSKVVGGAVPEELIPAVEKGIREA 545 (687)
T ss_pred HCCCEEEECCCCEEEEEECCCCCCCEEEEEECCCCCCCEEEEEEECCCCCCCCCEEECCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 19845852883027864025642222576504887632279999724667875088146568868566778999999999
Q ss_pred -------------------CCCEEECCC-HHHCCCHHHHH----------HHHCCEEEEEEEECCCCCHHHHHHHHHHHH
Q ss_conf -------------------564541269-66625867788----------862326999998083100038999886300
Q gi|254780321|r 387 -------------------DGSMQKLSN-PIDMPEVTKIA----------ELREPWIQVTIITPNEYLGSILKLCQERRG 436 (606)
Q Consensus 387 -------------------dG~~~~Vd~-p~~~p~~~~i~----------~i~EPi~~~~I~~P~ey~G~Vm~~l~~RRG 436 (606)
||++|.+++ +..|-.+...+ .++|||++++|.||++|+|+||++|++|||
T Consensus 546 ~~~GpL~g~pv~~v~v~l~d~~~~~~~~~~~~~~~a~~~a~~~a~~~a~p~LlEPi~~~eI~~p~~~~g~V~~~L~~RRG 625 (687)
T PRK13351 546 LASGPLAGYPVTDLRVTVLDGKYHSVDSSESAFVKAARKAFLEAVRKANPVLLEPIMELEITVPTEHVGDVLGDLSQRRG 625 (687)
T ss_pred HHCCCCCCCCEEEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEECCEEEEEEEECHHHHHHHHHHHHHCCC
T ss_conf 96396689952506999982687888887678999999999999985698897782899999688999999999986698
Q ss_pred EEECCCCCC-CEEEEEEEECHHHHHHHHHHHHHHHCCCEEEEEEEECCCEEC
Q ss_conf 142443368-369999996043332204687676357418889854354643
Q gi|254780321|r 437 IQIDMSHLD-NRAMIVYELPLNEVIFDFYDRLKSVSKGYASFDYNVIDYRDS 487 (606)
Q Consensus 437 ~~~~m~~~~-~~~~i~~~vPl~Eli~~f~~~LkS~T~G~as~~ye~~~Y~~~ 487 (606)
++.+++..+ +...+.+.+|++|+ +||.++|+|+|+|+|+|.++|+||++.
T Consensus 626 ~i~~~~~~~~~~~~I~a~vPv~e~-~g~~~~LRs~T~G~a~~~~~F~~~e~v 676 (687)
T PRK13351 626 KIHGTEPIGDGKVLVKAEAPLAEL-FGYATRLRSMTKGRGSFTMEFSHFDPV 676 (687)
T ss_pred EEECCEECCCCEEEEEEEECHHHH-HCHHHHHHHCCCCCEEEEEEECCCCCC
T ss_conf 886727459976999999886786-086687463088836999995755239
No 10
>PRK12740 elongation factor G; Reviewed
Probab=100.00 E-value=0 Score=854.40 Aligned_cols=454 Identities=31% Similarity=0.485 Sum_probs=403.0
Q ss_pred ECCCCCCHHHHHHHHHHHCCCCCCC---CCCCEEECCCHHHHHHCCEEEEEEEEEEEECCCCCEEEEEEEECCCCCHHHH
Q ss_conf 8013898778899999982980544---4431130586779871950523279999743788438999961787300279
Q gi|254780321|r 17 VAHIDHGKSTLADRFIQHCRGLTER---EMSSQVLDNMDIERERGITIKAQTVRLNYTSTDAKDYQLNLIDTPGHVDFTY 93 (606)
Q Consensus 17 iaHvDhGKTTL~d~lL~~tg~i~~~---~~~~~vlD~~~~EreRGITIka~~~~~~~~~~~~~~y~iNlIDTPGH~DF~~ 93 (606)
|||+|||||||+|+||+.+|.+++. +.++++||++++||||||||+|+.+++.| ++|+|||||||||+||++
T Consensus 1 iaHvd~GKTTL~e~lL~~sg~i~~~G~v~~g~t~~D~~~~E~eRgITI~ss~~s~~~-----~~~~iNlIDTPGHvDF~~ 75 (670)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISIQSAATTCEW-----KGHKINIIDTPGHVDFTG 75 (670)
T ss_pred CCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHCCCCEEEEEEEEEE-----CCEEEEEEECCCCCCHHH
T ss_conf 989988888999999996599875761438971467809999739973221388988-----998999992979751489
Q ss_pred HHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHH------------
Q ss_conf 99999973026899998687886558999999997099679983267887532113388877555322------------
Q gi|254780321|r 94 EVSRSLSACEGSLLVVDATQGVEAQTLANVYQAIDNNHEIITVLNKADLPSADPDRVKKQIEETIGIS------------ 161 (606)
Q Consensus 94 EV~r~l~a~dgaiLvVdA~~Gvq~QT~~~~~~A~~~~l~~I~viNKiD~~~A~~e~v~~ei~~~~g~~------------ 161 (606)
||+|||++|||||+||||++|||+||+.+|+.|.+.++|+|+|||||||+.|+++++.+++++.++..
T Consensus 76 EV~~aLrv~DgAvlvVDaveGV~~qT~~v~r~a~~~~lp~ilvINKiDr~~a~~~~~l~~i~~~l~~~~~~~~~Pi~~~~ 155 (670)
T PRK12740 76 EVERALRVLDGAVVVVCAVGGVEVQTETVWRYAEEYGVPRIAFVNKLDRAGADFRRVLAQLQEALGAPVVPLQLPIGEGD 155 (670)
T ss_pred HHHHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCCEEEEEEECCCC
T ss_conf 99999998686899997899973789999999998799969999797899999899999999984898357985504788
Q ss_pred -----------------------------------------------------------------HHH------------
Q ss_conf -----------------------------------------------------------------321------------
Q gi|254780321|r 162 -----------------------------------------------------------------TED------------ 164 (606)
Q Consensus 162 -----------------------------------------------------------------~~~------------ 164 (606)
.++
T Consensus 156 ~f~g~iDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~lle~i~e~dd~lle~yl~~~~~~~~~l~~~l~~~~~~~ 235 (670)
T PRK12740 156 DFKGVVDLLSMKAYRYDDEGGPSEEIEIPAELLDRAEEAREELLEALAEFDDELMEKYLEGEEPSEEEIKAGLRKGTRAG 235 (670)
T ss_pred CEEEEEECCCCEEEEECCCCCCEEECCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHC
T ss_conf 44578522035689982789943772387889999999999999998742599999987679999999999999999709
Q ss_pred ----HHHHHHHCCCCCCHHHHHHHHHHHCCCC----------------HHHHHCCCCCCCCCEEECCCCCEEEEEEECCC
Q ss_conf ----0001110022320067877632100011----------------11220123310121011475725999981698
Q gi|254780321|r 165 ----ALLVSAKTGEGIPLLLERIVQQLPSPTS----------------PEGANAPLKALLIDSWYNSYLGVMVLVRIING 224 (606)
Q Consensus 165 ----ii~vSAktG~GV~~LLd~Iv~~iP~P~~----------------~~~~~~Pl~alVfds~~D~~~G~I~~~RV~sG 224 (606)
++++||++|.||++|||+|++++|+|.. ..++++||.|+|||+++|||.|+++|+||+||
T Consensus 236 ~~~Pv~~gSa~~~~Gv~~LLd~I~~~lPsP~e~~~~~~~~~~~~~~~~~~d~~~p~~a~VfK~~~d~~~G~i~~~RV~sG 315 (670)
T PRK12740 236 SIVPVFCGSALKNKGVQRLLDAVVDYLPSPTEVPPRLGTDGEDEEPVLAPDPDGPLSALVFKTMDDPFVGKLSLVRVYSG 315 (670)
T ss_pred CEEEEEECCCCCCCCHHHHHHHHHHHCCCHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCCCEEEEEEEECC
T ss_conf 75789862543577889999999987899254254114477776321457999982899998478588974899998366
Q ss_pred CCCCCCEEEEECCCCCCCCCCCCCCCC-CEEEEHHCCCCCHHHHHHCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCE
Q ss_conf 735584588733556421012223355-4124010124712332201100244445420004667853236455222212
Q gi|254780321|r 225 QLTKGQSIRLMGTNAKYQVERIGILTP-KMIDIEALYPGEIGVMIASIKEVSHTRVGDTITDDSSPTTSALPGFKPIQPV 303 (606)
Q Consensus 225 ~lk~Gd~I~~~~~g~~~~v~~ig~~~~-~~~~v~~l~aGdVG~ii~gik~l~~~~vGDTl~~~~~p~~~~Lp~~~~~~P~ 303 (606)
+|++||+|++.+++++.++.+++.+.+ +..+++++.||||+. +.+++++++|||||+.+.+. +++.+.+|+|+
T Consensus 316 ~L~~g~~v~~~~~~~~eki~~l~~~~g~~~~~v~~~~aG~Iv~----i~gl~~~~tgdTL~~~~~~~--~~~~~~~~~Pv 389 (670)
T PRK12740 316 TLKKGDTLLNSTTGKKERVGRLYRMHGKQQEEIDEAVAGDIVA----VVKLKEAATGDTLCDKGDPI--LLEPMEFPEPV 389 (670)
T ss_pred EECCCCEEEECCCCCEEEEEEEEEECCCCCEEEEEEECCCEEE----EECCCCCCCCCEECCCCCCC--CCCCCCCCCCC
T ss_conf 7558998983587515871235787157624889980597899----84566663588610788776--56777789986
Q ss_pred EEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCC--CCCCCCCCCEEEEEECCHHHHHHHHHHHHHHCCCEEEEECCCCCE
Q ss_conf 664212677024578899998886411221112--567600042028996376789888988866449506973782330
Q gi|254780321|r 304 VFCGLFPVDATQFENLRTAINKLRLNDASFSFE--LENSTALGFGFRCGFLGLLHLEIIQERLEREFSLNLIGTSPSVVY 381 (606)
Q Consensus 304 v~~~i~p~~~~d~~~L~~aL~kL~~~D~sl~~e--~Ets~aLg~Gfr~gglG~LHLeVi~eRL~rEfg~ev~~t~P~V~Y 381 (606)
++++++|.|.+|.++|.++|.||..+||||+++ +||++.+ ++|+|||||||+++||+|+||+++.++.|.|+|
T Consensus 390 ~~vaieP~~~~d~~kL~~~L~~L~~eDPsl~v~~~~etge~v-----l~g~GElHLei~l~~Lr~~f~iev~~s~P~V~y 464 (670)
T PRK12740 390 ISLAIEPKDKGDEEKLSEALGRLAEEDPTLRVEQDEETGETI-----LSGMGELHLEVALERLKRKYGVEVETGPPQVPY 464 (670)
T ss_pred CEEEEEECCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCEEE-----EECCCHHHHHHHHHHHHHHHCCEEEEECCCEEE
T ss_conf 306888578217999999999777418955999817771279-----983798999999999989869669983683468
Q ss_pred EEEE----------------------------------------------------------------------------
Q ss_conf 3353----------------------------------------------------------------------------
Q gi|254780321|r 382 ELYM---------------------------------------------------------------------------- 385 (606)
Q Consensus 382 kv~~---------------------------------------------------------------------------- 385 (606)
|.|.
T Consensus 465 rETi~~~~~~~~~~kkqsgg~gq~~~v~~~~eP~~~g~g~~f~~~i~gg~ip~~~~~ai~~G~~~a~~~GpL~g~pv~~v 544 (670)
T PRK12740 465 RETIRKAAEGHGRHKKQSGGHGQFGDVWLEIEPLPRGSGFEFVDKVVGGAVPRQYIPAVEKGVREALEKGVLAGFPVVDV 544 (670)
T ss_pred EEEECCCCCCCCEEEEECCCCCCEEEEEEEEEECCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEE
T ss_conf 99841441244057774178640458999973578887747987403885678889999989999997297578965335
Q ss_pred ----ECCCEEECCC-HHHCCCHHHHH----------HHHCCEEEEEEEECCCCCHHHHHHHHHHHHEEECCCCCCCEEEE
Q ss_conf ----1564541269-66625867788----------86232699999808310003899988630014244336836999
Q gi|254780321|r 386 ----HDGSMQKLSN-PIDMPEVTKIA----------ELREPWIQVTIITPNEYLGSILKLCQERRGIQIDMSHLDNRAMI 450 (606)
Q Consensus 386 ----~dG~~~~Vd~-p~~~p~~~~i~----------~i~EPi~~~~I~~P~ey~G~Vm~~l~~RRG~~~~m~~~~~~~~i 450 (606)
.||++|.||| +..|..+...+ .++|||++++|.||++|+|+||++|++|||++.+|++.++++.|
T Consensus 545 ~v~l~dg~~h~vdSs~~af~~A~~~a~~~a~~~a~p~LlEPi~~~eI~~p~~~~g~V~~~L~~RRG~i~~~~~~~g~~~I 624 (670)
T PRK12740 545 KVTLTDGSYHSVDSSEMAFKIAARLAFREAMPKAKPVLLEPIMRVEVSVPEEFVGDVIGDLSGRRGQILGMEAEGGWDVV 624 (670)
T ss_pred EEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEECCCEEEEEEECHHHHHHHHHHHHHCCCEEECEEECCCEEEE
T ss_conf 99998467157787378999999999999998669889768189999978899999999998769887573742995999
Q ss_pred EEEECHHHHHHHHHHHHHHHCCCEEEEEEEECCCEEC
Q ss_conf 9996043332204687676357418889854354643
Q gi|254780321|r 451 VYELPLNEVIFDFYDRLKSVSKGYASFDYNVIDYRDS 487 (606)
Q Consensus 451 ~~~vPl~Eli~~f~~~LkS~T~G~as~~ye~~~Y~~~ 487 (606)
.+.+|++|+ +||.++|||+|+|+|+|+++|+||++-
T Consensus 625 ~a~vP~~e~-~g~~~~LRs~T~G~a~~~~~f~~y~~v 660 (670)
T PRK12740 625 RAEVPLAEM-FGYATDLRSLTQGRGSFTMEFSHYEEV 660 (670)
T ss_pred EEEECHHHH-HCHHHHHHHHCCCCEEEEEEECCCEEC
T ss_conf 999887886-167898674288846899994873268
No 11
>PRK12739 elongation factor G; Reviewed
Probab=100.00 E-value=0 Score=849.27 Aligned_cols=466 Identities=31% Similarity=0.505 Sum_probs=409.5
Q ss_pred CCCCHHHCEEEEEECCCCCCHHHHHHHHHHHCCCCCCC---CCCCEEECCCHHHHHHCCEEEEEEEEEEEECCCCCEEEE
Q ss_conf 89985253179998013898778899999982980544---443113058677987195052327999974378843899
Q gi|254780321|r 4 KPTPLSRIRNFSIVAHIDHGKSTLADRFIQHCRGLTER---EMSSQVLDNMDIERERGITIKAQTVRLNYTSTDAKDYQL 80 (606)
Q Consensus 4 ~~~p~~~IRN~~IiaHvDhGKTTL~d~lL~~tg~i~~~---~~~~~vlD~~~~EreRGITIka~~~~~~~~~~~~~~y~i 80 (606)
|.+|++|||||||+||+|||||||+|+||+.+|.+++. +.++++||++++||||||||+|.++++.| ++|+|
T Consensus 3 ~~~~~e~IRNi~IvaHvd~GKTTL~d~LL~~~g~i~~~g~v~~g~~~~D~~~~E~eRgITi~ss~~s~~~-----~~~~i 77 (693)
T PRK12739 3 REFPLEKTRNIGIMAHIDAGKTTTTERILFYTGKIHKIGEVHDGAATMDWMEQEQERGITITSAATTAFW-----KDHRI 77 (693)
T ss_pred CCCCHHHCEEEEEEECCCCCHHHHHHHHHHHCCCCCCCCEECCCCCCCCCCHHHHHCCCCEEECEEEEEE-----CCEEE
T ss_conf 8785788139999907998989999999997698565733438975687809998759867455277845-----99899
Q ss_pred EEEECCCCCHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 99617873002799999997302689999868788655899999999709967998326788753211338887755532
Q gi|254780321|r 81 NLIDTPGHVDFTYEVSRSLSACEGSLLVVDATQGVEAQTLANVYQAIDNNHEIITVLNKADLPSADPDRVKKQIEETIGI 160 (606)
Q Consensus 81 NlIDTPGH~DF~~EV~r~l~a~dgaiLvVdA~~Gvq~QT~~~~~~A~~~~l~~I~viNKiD~~~A~~e~v~~ei~~~~g~ 160 (606)
||||||||+||++||++||++|||||+||||.+|||+||+.+|+.|.+.++|+|+|||||||..|+++.+.+++.+.++.
T Consensus 78 NLIDTPGHvDF~~EV~~alrv~DgalvvVDaveGV~~qT~~v~rqa~~~~lp~il~iNKiDR~~ad~~~~~~~i~~~l~~ 157 (693)
T PRK12739 78 NIIDTPGHVDFTIEVERSLRVLDGAVAVFDAVSGVEPQSETVWRQADKYGVPRIVFVNKMDRIGADFFRVVEQIKDRLGA 157 (693)
T ss_pred EEEECCCCCHHHHHHHHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHHCC
T ss_conf 99949697405899999999848799999789887677999999999869896999979788999989999999998589
Q ss_pred H-------------------------------------------------------------------------------
Q ss_conf 2-------------------------------------------------------------------------------
Q gi|254780321|r 161 S------------------------------------------------------------------------------- 161 (606)
Q Consensus 161 ~------------------------------------------------------------------------------- 161 (606)
.
T Consensus 158 ~~~~~~~pi~~~~~f~g~vd~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~r~~l~e~v~e~dd~l~e~~l~~~~~~ 237 (693)
T PRK12739 158 NAVPIQLPIGAEDDFKGVIDLIKMKAIIWDDETLGAKYEEEDIPADLKEKAEEYREKLIEAVAETDEELMEKYLEGEEIT 237 (693)
T ss_pred CEEEEECCCCCCCCCCCEEEEECCEEEEEECCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 77999742203655331143100578885045579833781076889999999999999999865289999985587788
Q ss_pred HH-------------H---HHHHHHHCCCCCCHHHHHHHHHHHCCCC-----------------HHHHHCCCCCCCCCEE
Q ss_conf 32-------------1---0001110022320067877632100011-----------------1122012331012101
Q gi|254780321|r 162 TE-------------D---ALLVSAKTGEGIPLLLERIVQQLPSPTS-----------------PEGANAPLKALLIDSW 208 (606)
Q Consensus 162 ~~-------------~---ii~vSAktG~GV~~LLd~Iv~~iP~P~~-----------------~~~~~~Pl~alVfds~ 208 (606)
.+ + +++.||.++.|+++|||+|++++|+|.. ..++++||.|+||++.
T Consensus 238 ~~~l~~~l~~~~~~~~~~Pv~~gs~~~~~gv~~Lld~I~~~lPsP~e~~~~~~~~~~~~~~~~~~~~~~~p~~a~v~K~~ 317 (693)
T PRK12739 238 EEEIKAAIRKATINMEFFPVLCGSAFKNKGVQPLLDAVVDYLPSPLDIPAIKGINPDTGEEVERPASDDEPFAALAFKIM 317 (693)
T ss_pred HHHHHHHHHHHHHHCCCCCCEECCCCCCCCHHHHHHHHHHHCCCHHHCCCCCCCCCCCCCEEEECCCCCCCCEEEEEEEE
T ss_conf 99999999999983760020323200387899999999976899122344334478876423503699988389999988
Q ss_pred ECCCCCEEEEEEECCCCCCCCCEEEEECCCCCCCCCCCCCCCC-CEEEEHHCCCCCHHHHHHCCCCCCCCCCCCEECCCC
Q ss_conf 1475725999981698735584588733556421012223355-412401012471233220110024444542000466
Q gi|254780321|r 209 YNSYLGVMVLVRIINGQLTKGQSIRLMGTNAKYQVERIGILTP-KMIDIEALYPGEIGVMIASIKEVSHTRVGDTITDDS 287 (606)
Q Consensus 209 ~D~~~G~I~~~RV~sG~lk~Gd~I~~~~~g~~~~v~~ig~~~~-~~~~v~~l~aGdVG~ii~gik~l~~~~vGDTl~~~~ 287 (606)
.|||.|+++|+||+||+|++|++|++...++.+++.+++.+.+ +..+++++.||+|+. +.+++++.+|||||+.+
T Consensus 318 ~d~~~G~ia~~RV~sGtl~~g~~v~n~~~~~~~ki~~l~~~~g~~~~~v~~~~aG~Iv~----i~Gl~~~~tgdtl~~~~ 393 (693)
T PRK12739 318 TDPFVGRLTFFRVYSGTLESGSYVLNTTKGKKERIGRLLQMHANKREEIKEVYAGDIGA----AVGLKDTTTGDTLCDEK 393 (693)
T ss_pred ECCCCCCEEEEECCCCEECCCCEEECCCCCCEEECCEEEEEECCCCEEEEEECCCCEEE----EECCCCCCCCCEECCCC
T ss_conf 84899817899934771469998964676422430404786268741521764897699----96444541378723898
Q ss_pred CCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCC--CCCCCCCCCEEEEEECCHHHHHHHHHHHH
Q ss_conf 7853236455222212664212677024578899998886411221112--56760004202899637678988898886
Q gi|254780321|r 288 SPTTSALPGFKPIQPVVFCGLFPVDATQFENLRTAINKLRLNDASFSFE--LENSTALGFGFRCGFLGLLHLEIIQERLE 365 (606)
Q Consensus 288 ~p~~~~Lp~~~~~~P~v~~~i~p~~~~d~~~L~~aL~kL~~~D~sl~~e--~Ets~aLg~Gfr~gglG~LHLeVi~eRL~ 365 (606)
.|. .++.+.+|+|+++++++|.|.+|.++|.++|.+|..+||+|+++ +||++.+ ++|+||||||++++||+
T Consensus 394 ~~~--~~~~~~~p~Pv~~vaIeP~~~~d~~kL~~~L~~L~~~DPsl~v~~~eetGE~v-----l~g~GElHLe~~l~~L~ 466 (693)
T PRK12739 394 API--ILESMEFPEPVISLAVEPKSKADQDKMGIALQKLAEEDPTFRVETDEETGQTI-----ISGMGELHLDIIVDRMK 466 (693)
T ss_pred CCC--CCCCCCCCCCCEEEEEEECCHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCEE-----EEECCHHHHHHHHHHHH
T ss_conf 764--46644578873358998487768999999998742459836999807788189-----99259999999999999
Q ss_pred HHCCCEEEEECCCCCEEEEE------------------------------------------------------------
Q ss_conf 64495069737823303353------------------------------------------------------------
Q gi|254780321|r 366 REFSLNLIGTSPSVVYELYM------------------------------------------------------------ 385 (606)
Q Consensus 366 rEfg~ev~~t~P~V~Ykv~~------------------------------------------------------------ 385 (606)
++||+|+.++.|.|+||.|.
T Consensus 467 ~~f~vev~~s~P~V~yrETi~~~~~~~~~~~k~s~g~~~~~~v~l~~eP~~~~~~~~f~~~i~gg~ip~~~~~sv~~Gf~ 546 (693)
T PRK12739 467 REFKVEANVGAPQVAYRETITKSVEAEGKYKKQSGGRGQYGDVWIEFEPNEEGKGFEFVNKIVGGVIPKEYIPAVEKGLE 546 (693)
T ss_pred HHHCCCEEEECCCCEEEEEECCCCCEEEEEEECCCCCCCEEEEEEEECCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHH
T ss_conf 98698547516753389885045430579974269986126999997567778886675415578577888766789999
Q ss_pred --------------------ECCCEEECCCH-HHCCCHHHHH----------HHHCCEEEEEEEECCCCCHHHHHHHHHH
Q ss_conf --------------------15645412696-6625867788----------8623269999980831000389998863
Q gi|254780321|r 386 --------------------HDGSMQKLSNP-IDMPEVTKIA----------ELREPWIQVTIITPNEYLGSILKLCQER 434 (606)
Q Consensus 386 --------------------~dG~~~~Vd~p-~~~p~~~~i~----------~i~EPi~~~~I~~P~ey~G~Vm~~l~~R 434 (606)
.||++|.+|+. ..|--++..+ .++|||++++|.||++|+|.||++|++|
T Consensus 547 ~a~~~GpL~~~pv~~v~~~l~d~~~h~vds~~~~f~~a~~~a~~~a~~~A~p~LlEPi~~~eI~~p~~~~g~V~~~L~~R 626 (693)
T PRK12739 547 EAMKNGVLAGYPMVDVKATLYDGSYHDVDSSEMAFKIAASMALKEAAKKAGPVILEPIMKVEVVTPEEYMGDVIGDLNRR 626 (693)
T ss_pred HHHHHCCCCCCCEEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEECCEEEEEEEECHHHHHHHHHHHHHC
T ss_conf 99972883578555059999626504788845789999999999999855988975628999997889999999999876
Q ss_pred HHEEECCCCCCCEEEEEEEECHHHHHHHHHHHHHHHCCCEEEEEEEECCCEE
Q ss_conf 0014244336836999999604333220468767635741888985435464
Q gi|254780321|r 435 RGIQIDMSHLDNRAMIVYELPLNEVIFDFYDRLKSVSKGYASFDYNVIDYRD 486 (606)
Q Consensus 435 RG~~~~m~~~~~~~~i~~~vPl~Eli~~f~~~LkS~T~G~as~~ye~~~Y~~ 486 (606)
||++.+++..++..+|++.+|++|+ +||.++||++|+|+|+|.++|+||++
T Consensus 627 RG~i~~~~~~~g~~~I~a~iPv~e~-fgf~~~LR~~T~G~a~~~~~F~~y~~ 677 (693)
T PRK12739 627 RGQIEGMEARGGAQIVKAFVPLAEM-FGYATDLRSATQGRATFSMEFDHYEE 677 (693)
T ss_pred CCEEECEEECCCCEEEEEEECHHHH-HCHHHHHHHHCCCCEEEEEEECCCCC
T ss_conf 8987562744990999999887886-27789988438895489999688623
No 12
>PRK07560 elongation factor EF-2; Reviewed
Probab=100.00 E-value=0 Score=849.80 Aligned_cols=468 Identities=28% Similarity=0.477 Sum_probs=397.9
Q ss_pred HHHCEEEEEECCCCCCHHHHHHHHHHHCCCCCCC-CCCCEEECCCHHHHHHCCEEEEEEEEEEEECCCCCEEEEEEEECC
Q ss_conf 5253179998013898778899999982980544-443113058677987195052327999974378843899996178
Q gi|254780321|r 8 LSRIRNFSIVAHIDHGKSTLADRFIQHCRGLTER-EMSSQVLDNMDIERERGITIKAQTVRLNYTSTDAKDYQLNLIDTP 86 (606)
Q Consensus 8 ~~~IRN~~IiaHvDhGKTTL~d~lL~~tg~i~~~-~~~~~vlD~~~~EreRGITIka~~~~~~~~~~~~~~y~iNlIDTP 86 (606)
++|||||||+||+|||||||+|+||+.+|.++++ +.++++||++++||||||||+|+++++.|. ++|++|+|||||||
T Consensus 17 pe~IRNI~IiaHvdaGKTTLtE~lL~~sg~i~~~~~~~~t~~D~~~~E~eRgITI~sa~~sl~~~-~~~~~~~INlIDTP 95 (730)
T PRK07560 17 PEQIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGKQLALDYDEEEQARGITIKAANVSMVHE-YEGKEYLINLIDTP 95 (730)
T ss_pred HHHCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCHHHHHHCCCCEEECCEEEEEE-ECCCCEEEEEECCC
T ss_conf 76352899993799898999999999649986534798641788599997298575211028987-56983789998196
Q ss_pred CCCHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCHHHHHHHHHH-------
Q ss_conf 7300279999999730268999986878865589999999970996799832678875321133888775553-------
Q gi|254780321|r 87 GHVDFTYEVSRSLSACEGSLLVVDATQGVEAQTLANVYQAIDNNHEIITVLNKADLPSADPDRVKKQIEETIG------- 159 (606)
Q Consensus 87 GH~DF~~EV~r~l~a~dgaiLvVdA~~Gvq~QT~~~~~~A~~~~l~~I~viNKiD~~~A~~e~v~~ei~~~~g------- 159 (606)
||+||++||+|||++|||||+||||++|||+||+.+|+.|.+.++|+|+||||||+..+++....+++.+.++
T Consensus 96 Gh~DF~~Ev~~aLrv~DgAvvVvdav~GV~~qTe~v~rqa~~~~~p~ilfINKmDR~~~~l~~~~~~~~~~l~~~i~~~~ 175 (730)
T PRK07560 96 GHVDFGGDVTRAMRAVDGAIVVVDAVEGVMPQTETVLRQALEERVRPVLFINKVDRLIKELKLTPQEMQQRLLKIIKDVN 175 (730)
T ss_pred CCCHHHHHHHHHHHHHCEEEEEEECCCCCCCHHHHHHHHHHHCCCCEEEEEECCCCCHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf 97305999999998858789999789887731899999998779997999868662355537798999888988999999
Q ss_pred ------------------HHHHHHHHHHHHCCC----------------------------------CCCHHHHHHHHHH
Q ss_conf ------------------223210001110022----------------------------------3200678776321
Q gi|254780321|r 160 ------------------ISTEDALLVSAKTGE----------------------------------GIPLLLERIVQQL 187 (606)
Q Consensus 160 ------------------~~~~~ii~vSAktG~----------------------------------GV~~LLd~Iv~~i 187 (606)
....++.++||..+. ..+.|||+|++++
T Consensus 176 ~~i~~~~~~~~~~~~~~~~~~~~v~~~sa~~~~~~~~~~~~~~~~~~~ei~~~~~~~~~~~l~~~~pl~~~lld~i~~~l 255 (730)
T PRK07560 176 KLIEGYAPEEFKEKWKVDVADGTVAFGSALYNWAISVPMMQKTGIKFKDIIDYYEKGKVKELAEKAPLHEVVLDMVIKHL 255 (730)
T ss_pred HHHHHCCCHHHCCCEEECCCCCCHHHHHHHHCCCCCHHHHHHHCCCHHHHHHHHHCCHHHHHHHHCCHHHHHHHHHHHHC
T ss_conf 99986371553755052443342054423427523469998718777899999853128887653847999999999868
Q ss_pred HCCCCH-----------------------HHHHCCCCCCCCCEEECCCCCEEEEEEECCCCCCCCCEEEEECCCCCCCCC
Q ss_conf 000111-----------------------122012331012101147572599998169873558458873355642101
Q gi|254780321|r 188 PSPTSP-----------------------EGANAPLKALLIDSWYNSYLGVMVLVRIINGQLTKGQSIRLMGTNAKYQVE 244 (606)
Q Consensus 188 P~P~~~-----------------------~~~~~Pl~alVfds~~D~~~G~I~~~RV~sG~lk~Gd~I~~~~~g~~~~v~ 244 (606)
|+|... .++++||.|+||++.+|||.|.++|+|||||+|+.||+|++.+++.++++.
T Consensus 256 PsP~ea~~~ri~~~~~g~~~~~~~~~~~~~d~~~pl~~~vfK~~~dp~~g~is~~RV~sG~L~~g~~v~n~~~~~~eki~ 335 (730)
T PRK07560 256 PNPLEAQKYRIPKIWKGDLNSEIGKAMLNCDPNGPLVMMVTKIIVDPHAGEVATGRVFSGTIRRGQEVYLVGAKKKARVQ 335 (730)
T ss_pred CCHHHHCCCCCCCCCCCCCCCHHHEEEEECCCCCCCEEEEEEEEECCCCCEEEEEEEECCEECCCCEEEECCCCCCEEEE
T ss_conf 99577221035644578876510101220489987145775455669886489999843466479875404777412521
Q ss_pred CCCCCCC-CEEEEHHCCCCCHHHHHHCCCCCCCCCCCCEECCCCCCCCCCCCCCC-CCCCEEEEEECCCCHHHHHHHHHH
Q ss_conf 2223355-41240101247123322011002444454200046678532364552-222126642126770245788999
Q gi|254780321|r 245 RIGILTP-KMIDIEALYPGEIGVMIASIKEVSHTRVGDTITDDSSPTTSALPGFK-PIQPVVFCGLFPVDATQFENLRTA 322 (606)
Q Consensus 245 ~ig~~~~-~~~~v~~l~aGdVG~ii~gik~l~~~~vGDTl~~~~~p~~~~Lp~~~-~~~P~v~~~i~p~~~~d~~~L~~a 322 (606)
+++.+.+ +..+++++.|||||. +.+++++.+|||||+.+.+. .|+..+. .++|+++++++|.+.+|.++|.+|
T Consensus 336 ~l~~~~g~~~~~v~~~~aGdI~a----i~gL~~~~tGdTl~~~~~~~-~~~~~~~~~~~Pv~~~aIeP~~~~D~~kL~~a 410 (730)
T PRK07560 336 QVGIYMGPEREEVDEIPAGNIAA----VTGLKDARAGETVVSPEYKM-TPFESLKHISEPVVTVAIEAKNPKDLPKLIEV 410 (730)
T ss_pred EEEEEECCCEEEEEEECCCCEEE----EECCCCCCCCCEEECCCCCC-CCCCCCCCCCCCEEEEEEECCCHHHHHHHHHH
T ss_conf 57872069657810516787899----95665541166542587677-65222455899659999602886679999999
Q ss_pred HHHHHHHCCCCCCC--CCCCCCCCCEEEEEECCHHHHHHHHHHHHHHCCCEEEEECCCCCEEEEEECCCE---------E
Q ss_conf 98886411221112--567600042028996376789888988866449506973782330335315645---------4
Q gi|254780321|r 323 INKLRLNDASFSFE--LENSTALGFGFRCGFLGLLHLEIIQERLEREFSLNLIGTSPSVVYELYMHDGSM---------Q 391 (606)
Q Consensus 323 L~kL~~~D~sl~~e--~Ets~aLg~Gfr~gglG~LHLeVi~eRL~rEfg~ev~~t~P~V~Ykv~~~dG~~---------~ 391 (606)
|.+|..+||||+++ +||++.+ ++|+|||||||+++||+|+||+++.++.|+|+||.|...... |
T Consensus 411 L~~L~~eDPsl~v~~d~etge~v-----l~gmGElHLei~~~rL~~~f~vev~~~~p~V~YrETI~~~~~~~~~ks~~~h 485 (730)
T PRK07560 411 LRQLAKEDPTLQVKINEETGEHL-----LSGMGELHLEVITYRIKRDYGVEVVTSEPIVVYRETVRGKSQVVEGKSPNKH 485 (730)
T ss_pred HHHHHHHCCEEEEEECCCCCEEE-----EEECCHHHHHHHHHHHHHHHCCCEEECCCEEEEEEEECCCCCCEECCCCCCC
T ss_conf 99988419748999837788099-----9962899999999999998485236549767788641566551001168876
Q ss_pred ---------------------ECC---CHHH--------------------------C----------------------
Q ss_conf ---------------------126---9666--------------------------2----------------------
Q gi|254780321|r 392 ---------------------KLS---NPID--------------------------M---------------------- 399 (606)
Q Consensus 392 ---------------------~Vd---~p~~--------------------------~---------------------- 399 (606)
.|. +|.. |
T Consensus 486 ~~~~i~~epl~~~~~~~~~~g~v~~~~~p~~~~~~l~~~g~~~~~~~~v~~~~~~ni~~d~~~g~~~~~~~~~~v~~G~~ 565 (730)
T PRK07560 486 NRFYITVEPLDEEVIEAIKEGEISEDMDPKERAKILREAGMDKDEAKGVWAIYNGNVFIDMTKGIQYLRETMELIIEGFR 565 (730)
T ss_pred CEEEEEEEECCHHHHCCCCCCEEECCCCHHHHHHHHHHCCCCHHHHCCEEEECCCCEEEECCCCCCCHHHHHHHHHHHHH
T ss_conf 46999997476443103305555113482666556665177644420502312674555647675557989999999999
Q ss_pred -----------C--------------------------CHHHHH----------HHHCCEEEEEEEECCCCCHHHHHHHH
Q ss_conf -----------5--------------------------867788----------86232699999808310003899988
Q gi|254780321|r 400 -----------P--------------------------EVTKIA----------ELREPWIQVTIITPNEYLGSILKLCQ 432 (606)
Q Consensus 400 -----------p--------------------------~~~~i~----------~i~EPi~~~~I~~P~ey~G~Vm~~l~ 432 (606)
| .+...+ .++||||+++|.+|++|+|+||++++
T Consensus 566 ~a~~~GpL~g~Pv~~v~v~l~dg~~h~d~v~~~~~~~~~A~~~a~~~a~~~a~p~LLEPi~~~eI~~P~~~~G~V~~dL~ 645 (730)
T PRK07560 566 EAMKEGPLAKEPVRGVKVRLHDAKLHEDAIHRGPAQVIPAVRNAIFAAMLSAKPTLLEPIQKVDINVPQDYMGAVTSEIQ 645 (730)
T ss_pred HHHHCCCCCCCCCCCEEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEECCCEEEEEEECHHHHHHHHHHHH
T ss_conf 99955986676556679999974211563445637899999999999998779889856689999988899879999998
Q ss_pred HHHHEEECCCCCCCEEEEEEEECHHHHHHHHHHHHHHHCCCEEEEEEEECCCEEC
Q ss_conf 6300142443368369999996043332204687676357418889854354643
Q gi|254780321|r 433 ERRGIQIDMSHLDNRAMIVYELPLNEVIFDFYDRLKSVSKGYASFDYNVIDYRDS 487 (606)
Q Consensus 433 ~RRG~~~~m~~~~~~~~i~~~vPl~Eli~~f~~~LkS~T~G~as~~ye~~~Y~~~ 487 (606)
+|||++.+|+..++...|.+.+|++|+ +||.++|+|+|+|+|+|+++|+||++-
T Consensus 646 ~RRG~I~~~~~~~~~~~I~A~vPlae~-~gy~~~LRs~T~G~g~~~~~F~~y~~v 699 (730)
T PRK07560 646 GRRGKILDMTQEGDMAIIEAEAPVAEM-FGFAGEIRSATEGRAFWSTEFAGFEPV 699 (730)
T ss_pred HCCCEEECEECCCCCEEEEEEECHHHH-CCHHHHHHHHCCCCCEEEEEECCCCCC
T ss_conf 679588352236991999999778986-282899996688971699995886269
No 13
>TIGR00484 EF-G translation elongation factor G; InterPro: IPR004540 Translation elongation factors are responsible for two main processes during protein synthesis on the ribosome , , . EF1A (or EF-Tu) is responsible for the selection and binding of the cognate aminoacyl-tRNA to the A-site (acceptor site) of the ribosome. EF2 (or EF-G) is responsible for the translocation of the peptidyl-tRNA from the A-site to the P-site (peptidyl-tRNA site) of the ribosome, thereby freeing the A-site for the next aminoacyl-tRNA to bind. Elongation factors are responsible for achieving accuracy of translation and both EF1A and EF2 are remarkably conserved throughout evolution. EF-G is a large, five-domain GTPase that promotes the directional movement of mRNA and tRNAs on the ribosome in a GTP-dependent manner. Unlike other GTPases, but by analogy to the myosin motor, EF-G performs its function of powering translocation in the GDP-bound form; that is, in a kinetically stable ribosome-EF-G(GDP) complex formed by GTP hydrolysis on the ribosome. The complex undergoes an extensive structural rearrangement, in particular affecting the small ribosomal subunit, which leads to mRNA-tRNA movement. Domain 4, which extends from the 'body' of the EF-G molecule much like a lever arm, appears to be essential for the structural transition to take place. In a hypothetical model, GTP hydrolysis induces a conformational change in the G domain of EF-G, which affects the interactions with neighbouring domains within EF-G. The resulting rearrangement of the domains relative to each other generates conformational strain in the ribosome to which EF-G is fixed. Because of structural features of the tRNA-ribosome complex, this conformational strain results in directional tRNA-mRNA movement. The functional parallels between EF-G and motor proteins suggest that EF-G differs from classical G-proteins in that it functions as a force-generating mechanochemical device rather than a conformational switch . Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. Escherichia coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis sp. (strain PCC 6803) has a few proteins more closely related to EF-G than to any other characterised protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G. More information about these proteins can be found at Protein of the Month: Elongation Factors . ; GO: 0003746 translation elongation factor activity, 0005525 GTP binding, 0006414 translational elongation, 0005622 intracellular.
Probab=100.00 E-value=0 Score=868.63 Aligned_cols=469 Identities=30% Similarity=0.488 Sum_probs=423.5
Q ss_pred CCCHHHCEEEEEECCCCCCHHHHHHHHHHHCCCCCCC---C--CCCEEECCCHHHHHHCCEEEEEEEEEEEEC--CCCCE
Q ss_conf 9985253179998013898778899999982980544---4--431130586779871950523279999743--78843
Q gi|254780321|r 5 PTPLSRIRNFSIVAHIDHGKSTLADRFIQHCRGLTER---E--MSSQVLDNMDIERERGITIKAQTVRLNYTS--TDAKD 77 (606)
Q Consensus 5 ~~p~~~IRN~~IiaHvDhGKTTL~d~lL~~tg~i~~~---~--~~~~vlD~~~~EreRGITIka~~~~~~~~~--~~~~~ 77 (606)
.+|++++|||+|.||+|+||||++||+|+.||.+.+- . .+...||||+.||||||||.|.+++..|+. ..+ +
T Consensus 4 ~~~~~~~RNiGI~AHIDaGKTT~~ERILFy~g~~HkIgE~~g~dG~a~MDwME~E~ERGITItSAAT~~~Wk~~~~~~-~ 82 (705)
T TIGR00484 4 TTDLEKLRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHGKDGAATMDWMEQEKERGITITSAATTVEWKGMAKQY-D 82 (705)
T ss_pred CCCHHHCCCCCEEEEECCCCCCCHHEEEECCCCCCCEEECCCCCCCEECCHHHHCCCCCEEEECHHCCHHHHHHHHCC-C
T ss_conf 565233055432786338873201010001375010000016788511231230035871421001101021010001-4
Q ss_pred EEEEEEECCCCCHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCHHHHHHHH
Q ss_conf 89999617873002799999997302689999868788655899999999709967998326788753211338887755
Q gi|254780321|r 78 YQLNLIDTPGHVDFTYEVSRSLSACEGSLLVVDATQGVEAQTLANVYQAIDNNHEIITVLNKADLPSADPDRVKKQIEET 157 (606)
Q Consensus 78 y~iNlIDTPGH~DF~~EV~r~l~a~dgaiLvVdA~~Gvq~QT~~~~~~A~~~~l~~I~viNKiD~~~A~~e~v~~ei~~~ 157 (606)
|.|||||||||+||+-||+||||+.||||+|.||..||||||..+|++|..+.+|+|+|+||||+-+|++.++..+|...
T Consensus 83 ~~~N~IDTPGHVDFT~EVERSlRVLDGAv~V~~a~~GV~pQ~~TVwRQa~~Y~VPRi~FVNK~Dk~GAnf~~~~~~~~~r 162 (705)
T TIGR00484 83 HRINIIDTPGHVDFTVEVERSLRVLDGAVAVLDAVGGVQPQSETVWRQANKYEVPRIVFVNKMDKTGANFLRVVNQLKSR 162 (705)
T ss_pred CEEEEEECCCCEEEEEEEEEHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHH
T ss_conf 03788737894125788520122564566533302686641156776543268862899715564578788999999987
Q ss_pred HHHHH---------------------------------------------------------------H-----------
Q ss_conf 53223---------------------------------------------------------------2-----------
Q gi|254780321|r 158 IGIST---------------------------------------------------------------E----------- 163 (606)
Q Consensus 158 ~g~~~---------------------------------------------------------------~----------- 163 (606)
+++.+ +
T Consensus 163 L~~~~~~~qlpiGaE~~f~GviDLv~~ka~~~~~~~~g~~~~~~~iP~~~~~~~~~~~~~l~e~~a~~~~~LM~~yl~G~ 242 (705)
T TIGR00484 163 LGANAVPIQLPIGAEDKFIGVIDLVEMKAYFFEEGDKGTKIDEKEIPSDLLEQAKELRENLVEAVAELDEELMEKYLEGE 242 (705)
T ss_pred HCCCCEEEEECCCCCCCCCEEEEEEEEEEEEECCCCCCCEEHHHCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCC
T ss_conf 46773466411256656310455430156775067766400122264789999999999999988420078899850896
Q ss_pred ---------------------HHHHHHHHCCCCCCHHHHHHHHHHHCCCCH------------------HHHHCCCCCCC
Q ss_conf ---------------------100011100223200678776321000111------------------12201233101
Q gi|254780321|r 164 ---------------------DALLVSAKTGEGIPLLLERIVQQLPSPTSP------------------EGANAPLKALL 204 (606)
Q Consensus 164 ---------------------~ii~vSAktG~GV~~LLd~Iv~~iP~P~~~------------------~~~~~Pl~alV 204 (606)
-+++.||-.+.||+.||||+++|+|+|..- .+.+.||.+|.
T Consensus 243 e~~~~~ik~~~r~g~l~~~~~pv~~GSafKNKGv~~lLDAV~~yLP~P~dv~~~~~~~~~~~~~e~~~~~sd~~~f~~LA 322 (705)
T TIGR00484 243 ELTIEEIKNAIRKGVLNLELIPVLCGSAFKNKGVQLLLDAVVDYLPSPTDVPAIKGIDPDTNEEEIELKASDEEPFVALA 322 (705)
T ss_pred CCCHHHHHHHHHCCEEEEEEEEEEECCCCHHHHHHHHHHHHHHHCCCCCCHHHHHCCCCCCCCCCEEEEECCCCCCEEEE
T ss_conf 53689998887513112468888750330002588899999974789743154302355667761367515676512234
Q ss_pred CCEEECCCCCEEEEEEECCCCCCCCCEEEEECCCCCCCCCCCCCCCCC-EEEEHHCCCCCHHHHHHCCCCCCCCCCCCEE
Q ss_conf 210114757259999816987355845887335564210122233554-1240101247123322011002444454200
Q gi|254780321|r 205 IDSWYNSYLGVMVLVRIINGQLTKGQSIRLMGTNAKYQVERIGILTPK-MIDIEALYPGEIGVMIASIKEVSHTRVGDTI 283 (606)
Q Consensus 205 fds~~D~~~G~I~~~RV~sG~lk~Gd~I~~~~~g~~~~v~~ig~~~~~-~~~v~~l~aGdVG~ii~gik~l~~~~vGDTl 283 (606)
|+..-|||.|.+.|+|||+|.|+.|+.|.|....+++++.++-.||.+ +.++++..||||.+++ +++++.+||||
T Consensus 323 FK~~tdpfvG~LTf~RvY~G~l~~G~~v~Ns~~~k~ervgRl~~MHa~~re~I~~~~aGdI~A~~----Glkd~~TGdTl 398 (705)
T TIGR00484 323 FKVATDPFVGQLTFVRVYSGVLKSGSYVKNSRKSKKERVGRLVKMHANKREEIKEVRAGDIAAAI----GLKDTTTGDTL 398 (705)
T ss_pred EEECCCCCCCEEEEEEEEEEEECCCCEEEECHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEE----CCEECCCCCCC
T ss_conf 56405873112789999761512797776020000144323331003772100121356368873----13002567632
Q ss_pred CCCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCC--CCCCCCCCCCEEEEEECCHHHHHHHH
Q ss_conf 0466785323645522221266421267702457889999888641122111--25676000420289963767898889
Q gi|254780321|r 284 TDDSSPTTSALPGFKPIQPVVFCGLFPVDATQFENLRTAINKLRLNDASFSF--ELENSTALGFGFRCGFLGLLHLEIIQ 361 (606)
Q Consensus 284 ~~~~~p~~~~Lp~~~~~~P~v~~~i~p~~~~d~~~L~~aL~kL~~~D~sl~~--e~Ets~aLg~Gfr~gglG~LHLeVi~ 361 (606)
|+.+.... |...++|+|++..++.|+++.|.+++.-||.||+.|||||++ ++||++++ ++|||||||||++
T Consensus 399 ~d~~~~~~--le~M~fp~PVI~~avePK~Kad~~kM~~AL~~la~EDP~F~~~~~~E~g~Ti-----I~GMGELHL~i~v 471 (705)
T TIGR00484 399 CDEKADVI--LESMEFPEPVISLAVEPKTKADQEKMGIALGKLAEEDPTFRTFTDEETGQTI-----IAGMGELHLDIIV 471 (705)
T ss_pred CCCCCCCE--EEECCCCCCEEEEEECCCCCCCHHHHHHHHHHHHCCCCCEEEEECCCCCCHH-----HHCCCHHHHHHHH
T ss_conf 25642000--1002588871688755887435567999987532248860477527444413-----2031045677886
Q ss_pred HHHHHHCCCEEEEECCCCCEE-----------------------------------------------------------
Q ss_conf 888664495069737823303-----------------------------------------------------------
Q gi|254780321|r 362 ERLEREFSLNLIGTSPSVVYE----------------------------------------------------------- 382 (606)
Q Consensus 362 eRL~rEfg~ev~~t~P~V~Yk----------------------------------------------------------- 382 (606)
+||+|||.+|+.++.|+|.||
T Consensus 472 dRmkREFkvE~~~G~PQVayRET~~~~~~~~e~k~~kQSGGrGQyG~V~i~~~P~~~~~~~~gyEF~n~I~GGviP~EYI 551 (705)
T TIGR00484 472 DRMKREFKVEANVGAPQVAYRETIRSKAEDVEGKYAKQSGGRGQYGHVVIELEPLEPEEGGKGYEFVNEIKGGVIPREYI 551 (705)
T ss_pred HHHCCEEEEEEECCCCCCHHHHHHHHHHHHHCCEEEECCCCCCCCEEEEEEEECCCCCCCCCCCEEEECCCCCCCCCCCH
T ss_conf 65210033433058683034554311123213503230689873016899861277788876422533034860773210
Q ss_pred -------------------------EEEECCCEEECCCHHHCCCH--HHHH----------HHHCCEEEEEEEECCCCCH
Q ss_conf -------------------------35315645412696662586--7788----------8623269999980831000
Q gi|254780321|r 383 -------------------------LYMHDGSMQKLSNPIDMPEV--TKIA----------ELREPWIQVTIITPNEYLG 425 (606)
Q Consensus 383 -------------------------v~~~dG~~~~Vd~p~~~p~~--~~i~----------~i~EPi~~~~I~~P~ey~G 425 (606)
+++.||+||.||| +++++. .-++ .+|||||+++|.+|++|+|
T Consensus 552 p~v~~G~~~a~~~G~LaGyP~vD~k~~l~dG~yH~VDS-se~AFk~Aas~A~k~a~~~a~PvlLEPiMkvev~~P~ey~G 630 (705)
T TIGR00484 552 PAVDKGLQEALESGPLAGYPVVDIKVTLFDGSYHDVDS-SELAFKLAASLAFKEAVKKANPVLLEPIMKVEVEVPEEYMG 630 (705)
T ss_pred HHHHHHHHHHHHCCCEECCCEEEEEEEEECCCCCCCCH-HHHHHHHHHHHHHHHHHHHCCCEEECCCEEEEEECCCCCCC
T ss_conf 36777799998469732143476478885175231162-78999999999999867635974544602788755852015
Q ss_pred HHHHHHHHHHHEEECCCCCCCEEEEEEEECHHHHHHHHHHHHHHHCCCEEEEEEEECCCEEC
Q ss_conf 38999886300142443368369999996043332204687676357418889854354643
Q gi|254780321|r 426 SILKLCQERRGIQIDMSHLDNRAMIVYELPLNEVIFDFYDRLKSVSKGYASFDYNVIDYRDS 487 (606)
Q Consensus 426 ~Vm~~l~~RRG~~~~m~~~~~~~~i~~~vPl~Eli~~f~~~LkS~T~G~as~~ye~~~Y~~~ 487 (606)
++|+++++|||.+.+++..++...+.+.|||+|| |||.+.|||.|+|+|+|.|+|.+|.+.
T Consensus 631 d~~Gdl~~RRg~~~g~~~~~~~~~v~A~VPL~EM-FGyaT~LRS~tqGr~~y~M~~~~Y~e~ 691 (705)
T TIGR00484 631 DVIGDLSRRRGIIEGSEERGNVQVVKAEVPLSEM-FGYATDLRSSTQGRGEYSMEFLHYGEV 691 (705)
T ss_pred CHHCCCCCCCCEEEEEECCCCEEEEEEEECCHHH-CCHHHHHHCCCCCCEEEEEEHHHHCCC
T ss_conf 1000100035114200023735689985060322-230323320567722688632332123
No 14
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=0 Score=838.56 Aligned_cols=467 Identities=34% Similarity=0.527 Sum_probs=415.2
Q ss_pred CCHHHCEEEEEECCCCCCHHHHHHHHHHHCCCCCCCC---CCCEEECCCHHHHHHCCEEEEEEEEEEEECCCCCEEEEEE
Q ss_conf 9852531799980138987788999999829805444---4311305867798719505232799997437884389999
Q gi|254780321|r 6 TPLSRIRNFSIVAHIDHGKSTLADRFIQHCRGLTERE---MSSQVLDNMDIERERGITIKAQTVRLNYTSTDAKDYQLNL 82 (606)
Q Consensus 6 ~p~~~IRN~~IiaHvDhGKTTL~d~lL~~tg~i~~~~---~~~~vlD~~~~EreRGITIka~~~~~~~~~~~~~~y~iNl 82 (606)
++++++|||+|+||+|||||||+||||+.||.+++.+ .++++||+|+.||||||||+|+++++.|.+ +|+|||
T Consensus 5 ~~~~~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~----~~~iNl 80 (697)
T COG0480 5 MPLERIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKG----DYRINL 80 (697)
T ss_pred CCCCCCEEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHCCCEEEEEEEEEEECC----CEEEEE
T ss_conf 5544540799996047880778899998759757785566786547887889866977864056899708----658999
Q ss_pred EECCCCCHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHH--
Q ss_conf 617873002799999997302689999868788655899999999709967998326788753211338887755532--
Q gi|254780321|r 83 IDTPGHVDFTYEVSRSLSACEGSLLVVDATQGVEAQTLANVYQAIDNNHEIITVLNKADLPSADPDRVKKQIEETIGI-- 160 (606)
Q Consensus 83 IDTPGH~DF~~EV~r~l~a~dgaiLvVdA~~Gvq~QT~~~~~~A~~~~l~~I~viNKiD~~~A~~e~v~~ei~~~~g~-- 160 (606)
||||||+||+.||+|||++||||++||||.+|||+||..+|++|.+.++|+|+|||||||..|++..+.+++.+.++.
T Consensus 81 IDTPGHVDFt~EV~rslrvlDgavvVvdaveGV~~QTEtv~rqa~~~~vp~i~fiNKmDR~~a~~~~~~~~l~~~l~~~~ 160 (697)
T COG0480 81 IDTPGHVDFTIEVERSLRVLDGAVVVVDAVEGVEPQTETVWRQADKYGVPRILFVNKMDRLGADFYLVVEQLKERLGANP 160 (697)
T ss_pred ECCCCCCCCHHHHHHHHHHHCCEEEEEECCCCEEECHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCC
T ss_conf 57997353477879988861650999988788300379999998655997599997843355673350999999867983
Q ss_pred ---------------------------H-----------H--------------------H-------------------
Q ss_conf ---------------------------2-----------3--------------------2-------------------
Q gi|254780321|r 161 ---------------------------S-----------T--------------------E------------------- 163 (606)
Q Consensus 161 ---------------------------~-----------~--------------------~------------------- 163 (606)
. . +
T Consensus 161 ~~v~~pIg~~~~f~g~idl~~~~~~~~~~~~~~~~~~ip~~~~~~~~e~r~~~~e~i~e~de~l~e~yl~g~e~~~~~i~ 240 (697)
T COG0480 161 VPVQLPIGAEEEFEGVIDLVEMKAVAFGDGAKYEWIEIPADLKEIAEEAREKLLEALAEFDEELMEKYLEGEEPTEEEIK 240 (697)
T ss_pred EEEECCCCCCCCCCCEEEHHHCCEEEECCCCCCCEEECCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCHHHHH
T ss_conf 22321115730047636711067179757752431558778876789999999998861579999998668876479999
Q ss_pred -------------HHHHHHHHCCCCCCHHHHHHHHHHHCCCCH------------------HHHHCCCCCCCCCEEECCC
Q ss_conf -------------100011100223200678776321000111------------------1220123310121011475
Q gi|254780321|r 164 -------------DALLVSAKTGEGIPLLLERIVQQLPSPTSP------------------EGANAPLKALLIDSWYNSY 212 (606)
Q Consensus 164 -------------~ii~vSAktG~GV~~LLd~Iv~~iP~P~~~------------------~~~~~Pl~alVfds~~D~~ 212 (606)
.+++.||.++.|++.|||+|++++|+|... .+.++||.|++||+.+|||
T Consensus 241 ~~i~~~~~~~~~~pvl~gsa~kn~gv~~lLdav~~~lPsP~e~~~~~g~~~~~~~~~~~~~~~~e~p~~a~vfKi~~d~~ 320 (697)
T COG0480 241 KALRKGTIAGKIVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDVPPIKGDLDDEIEKAVLRKASDEGPLSALVFKIMTDPF 320 (697)
T ss_pred HHHHHHHHCCCEEEEEEEEECCCCCHHHHHHHHHHHCCCHHHCCCCCCCCCCCCCCHHCCCCCCCCCEEEEEEEEEECCC
T ss_conf 99987653266256775010257757999999998789956645444767753230000468888865999999686487
Q ss_pred CCEEEEEEECCCCCCCCCEEEEECCCCCCCCCCCCCCCC-CEEEEHHCCCCCHHHHHHCCCCCCCCCCCCEECCCCCCCC
Q ss_conf 725999981698735584588733556421012223355-4124010124712332201100244445420004667853
Q gi|254780321|r 213 LGVMVLVRIINGQLTKGQSIRLMGTNAKYQVERIGILTP-KMIDIEALYPGEIGVMIASIKEVSHTRVGDTITDDSSPTT 291 (606)
Q Consensus 213 ~G~I~~~RV~sG~lk~Gd~I~~~~~g~~~~v~~ig~~~~-~~~~v~~l~aGdVG~ii~gik~l~~~~vGDTl~~~~~p~~ 291 (606)
.|.++|+|||||+|++|+.+++.+.+++.++.+++.|++ ++.+++++.||||+. +.+++++.+|||+|+.+.+
T Consensus 321 ~g~l~~~RvysGtl~~G~~v~n~~~~~~erv~~l~~~~~~~~~~v~~~~AG~I~a----~~Gl~~~~tGdTl~~~~~~-- 394 (697)
T COG0480 321 VGKLTFVRVYSGTLKSGSEVLNSTKGKKERVGRLLLMHGNEREEVDEVPAGDIVA----LVGLKDATTGDTLCDENKP-- 394 (697)
T ss_pred CCEEEEEEEECCEECCCCEEEECCCCCCEEEEEEEECCCCCEEECCCCCCCCEEE----EECCCCCCCCCEEECCCCC--
T ss_conf 8759999986437737988995799853787789871689502605405764899----9752355407856537876--
Q ss_pred CCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCC--CCCCCCCCCEEEEEECCHHHHHHHHHHHHHHCC
Q ss_conf 236455222212664212677024578899998886411221112--567600042028996376789888988866449
Q gi|254780321|r 292 SALPGFKPIQPVVFCGLFPVDATQFENLRTAINKLRLNDASFSFE--LENSTALGFGFRCGFLGLLHLEIIQERLEREFS 369 (606)
Q Consensus 292 ~~Lp~~~~~~P~v~~~i~p~~~~d~~~L~~aL~kL~~~D~sl~~e--~Ets~aLg~Gfr~gglG~LHLeVi~eRL~rEfg 369 (606)
.+++.+.+|+|++..+++|++++|.+||.+||.+|+.+||+|+++ .||.+.+ ++|+|||||||+.+||+|+||
T Consensus 395 v~~~~~~~pePVi~vavepk~~~d~~Kl~~aL~~l~~eDPt~~v~~d~Etge~i-----IsGmGELHLei~~drl~~~~~ 469 (697)
T COG0480 395 VILESMEFPEPVISVAVEPKTKADQEKLSEALNKLAEEDPTFRVETDEETGETI-----ISGMGELHLEIIVDRLKREFG 469 (697)
T ss_pred CCCCCCCCCCCEEEEEEEECCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCEE-----EEECCHHHHHHHHHHHHHHCC
T ss_conf 465665479964899976788435899999999877538845899817766189-----982655549999998776419
Q ss_pred CEEEEECCCCCEE-------------------------------------------------------------------
Q ss_conf 5069737823303-------------------------------------------------------------------
Q gi|254780321|r 370 LNLIGTSPSVVYE------------------------------------------------------------------- 382 (606)
Q Consensus 370 ~ev~~t~P~V~Yk------------------------------------------------------------------- 382 (606)
+|+.+++|+|+||
T Consensus 470 vev~~~~PqV~YrETi~~~~~~~~~~~kqsgg~~q~~~v~i~~EP~~~~~~~~f~~~i~~g~~P~~yi~~ve~G~~~a~~ 549 (697)
T COG0480 470 VEVEVGKPQVAYRETIRKKSEVEGKHKKQSGGPGQYGHVYIEIEPLEDGSGFEFVDKIVGGVVPKEYIPAVEKGFREALK 549 (697)
T ss_pred CEEEECCCEEEEEEEECCCCCCEEEEEECCCCCCCCCEEEEEEEECCCCCCEEEEEHHCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 25893498168886614665430345303688985537999997589876417750005576726654778999999985
Q ss_pred -------------EEEECCCEEECCC-HHHCCCHHHHH----------HHHCCEEEEEEEECCCCCHHHHHHHHHHHHEE
Q ss_conf -------------3531564541269-66625867788----------86232699999808310003899988630014
Q gi|254780321|r 383 -------------LYMHDGSMQKLSN-PIDMPEVTKIA----------ELREPWIQVTIITPNEYLGSILKLCQERRGIQ 438 (606)
Q Consensus 383 -------------v~~~dG~~~~Vd~-p~~~p~~~~i~----------~i~EPi~~~~I~~P~ey~G~Vm~~l~~RRG~~ 438 (606)
+++.||++|.+|| +..|--+...+ .++|||++++|.+|++|+|+||+++++|||++
T Consensus 550 ~GpLag~pv~dvkv~L~dgs~h~vdss~~af~~a~~~a~~~a~~~a~P~lLEPi~~veI~~P~d~~G~V~~~l~~rRG~I 629 (697)
T COG0480 550 SGPLAGYPVVDVKVTLLDGSYHEVDSSEMAFKIAASLAFKEAMLKAKPVLLEPIMKVEITTPEEYMGDVIGDLNSRRGQI 629 (697)
T ss_pred CCCCCCCCEEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEECCEEEEEEECCHHHHCHHHHHHHHCCEEE
T ss_conf 59878971572699997475046888888999999999999986078668555279999743465231687663151598
Q ss_pred ECCCCC-C-CEEEEEEEECHHHHHHHHHHHHHHHCCCEEEEEEEECCCEECC
Q ss_conf 244336-8-3699999960433322046876763574188898543546436
Q gi|254780321|r 439 IDMSHL-D-NRAMIVYELPLNEVIFDFYDRLKSVSKGYASFDYNVIDYRDSD 488 (606)
Q Consensus 439 ~~m~~~-~-~~~~i~~~vPl~Eli~~f~~~LkS~T~G~as~~ye~~~Y~~~d 488 (606)
.+|+.. + ....+++.+|++|+ +||.+.|+|+|+|+|+|+++|+||++..
T Consensus 630 ~~~~~~~~~~~~~i~A~vPl~Em-fgya~dLRs~T~Gra~~~m~f~~y~~vp 680 (697)
T COG0480 630 LGMEQRPGGGLDVIKAEVPLAEM-FGYATDLRSATQGRASFSMEFDHYEEVP 680 (697)
T ss_pred ECCEECCCCCEEEEEEEECHHHH-CCCHHHHHHHCCCCEEEEEEECCCEECC
T ss_conf 43042268845999998366885-4533666754568616999735127378
No 15
>KOG0465 consensus
Probab=100.00 E-value=0 Score=786.13 Aligned_cols=465 Identities=31% Similarity=0.518 Sum_probs=407.5
Q ss_pred CCCHHHCEEEEEECCCCCCHHHHHHHHHHHCCCCCCC---CCCCEEECCCHHHHHHCCEEEEEEEEEEEECCCCCEEEEE
Q ss_conf 9985253179998013898778899999982980544---4431130586779871950523279999743788438999
Q gi|254780321|r 5 PTPLSRIRNFSIVAHIDHGKSTLADRFIQHCRGLTER---EMSSQVLDNMDIERERGITIKAQTVRLNYTSTDAKDYQLN 81 (606)
Q Consensus 5 ~~p~~~IRN~~IiaHvDhGKTTL~d~lL~~tg~i~~~---~~~~~vlD~~~~EreRGITIka~~~~~~~~~~~~~~y~iN 81 (606)
..|+++|||++|+||+|+|||||+||+||.+|.+..- ..+..+||+|++||+|||||+|.++...| ++|.||
T Consensus 33 ~~~~~k~RNIgi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~~a~md~m~~er~rgITiqSAAt~~~w-----~~~~iN 107 (721)
T KOG0465 33 RIPLNKIRNIGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGGGATMDSMELERQRGITIQSAATYFTW-----RDYRIN 107 (721)
T ss_pred CCCHHHHCCCCEEEEEECCCCEEEHEEEEECCEEEECCCCCCCCEEEEHHHHHHHCCCEEEECEEEEEE-----CCCEEE
T ss_conf 574545100316999826985110200130220100232026760464277786538446412156640-----452067
Q ss_pred EEECCCCCHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHH-
Q ss_conf 9617873002799999997302689999868788655899999999709967998326788753211338887755532-
Q gi|254780321|r 82 LIDTPGHVDFTYEVSRSLSACEGSLLVVDATQGVEAQTLANVYQAIDNNHEIITVLNKADLPSADPDRVKKQIEETIGI- 160 (606)
Q Consensus 82 lIDTPGH~DF~~EV~r~l~a~dgaiLvVdA~~Gvq~QT~~~~~~A~~~~l~~I~viNKiD~~~A~~e~v~~ei~~~~g~- 160 (606)
|||||||+||.-||+|+|++.|||++|+||+.|||+||..+|+.+...+.|.|.|||||||-+|+|-++.++|...++.
T Consensus 108 iIDTPGHvDFT~EVeRALrVlDGaVlvl~aV~GVqsQt~tV~rQ~~ry~vP~i~FiNKmDRmGa~~~~~l~~i~~kl~~~ 187 (721)
T KOG0465 108 IIDTPGHVDFTFEVERALRVLDGAVLVLDAVAGVESQTETVWRQMKRYNVPRICFINKMDRMGASPFRTLNQIRTKLNHK 187 (721)
T ss_pred EECCCCCEEEEEEEHHHHHHCCCEEEEEECCCCEEHHHHHHHHHHHHCCCCEEEEEEHHHHCCCCHHHHHHHHHHHCCCC
T ss_conf 85489721579772002520567289997036511135689888876189759998616644797488999998622786
Q ss_pred ---------------------------------------------------------------HH--------------H
Q ss_conf ---------------------------------------------------------------23--------------2
Q gi|254780321|r 161 ---------------------------------------------------------------ST--------------E 163 (606)
Q Consensus 161 ---------------------------------------------------------------~~--------------~ 163 (606)
|. +
T Consensus 188 ~a~vqiPig~e~~f~GvvDlv~~kai~~~g~~g~~i~~~eIP~~l~~~~~e~R~~LIE~lad~DE~l~e~fLee~~ps~~ 267 (721)
T KOG0465 188 PAVVQIPIGSESNFKGVVDLVNGKAIYWDGENGEIVRKDEIPEDLEELAEEKRQALIETLADVDETLAEMFLEEEEPSAQ 267 (721)
T ss_pred HHEEECCCCCCCCCHHHHHHHHCEEEEECCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHH
T ss_conf 02267641445443147746322589971898754685569878999999999999999861168999998525899989
Q ss_pred ----------------HHHHHHHHCCCCCCHHHHHHHHHHHCCCCHH------------------HHHC-CCCCCCCCEE
Q ss_conf ----------------1000111002232006787763210001111------------------2201-2331012101
Q gi|254780321|r 164 ----------------DALLVSAKTGEGIPLLLERIVQQLPSPTSPE------------------GANA-PLKALLIDSW 208 (606)
Q Consensus 164 ----------------~ii~vSAktG~GV~~LLd~Iv~~iP~P~~~~------------------~~~~-Pl~alVfds~ 208 (606)
.+++.||..+.||++|||+|++|+|+|..-. ..|. ||-||.|+..
T Consensus 268 ~l~~aIRr~Ti~r~fvPVl~GSAlKNkGVQPlLDAVvdYLPsP~Ev~n~a~~ke~~~~ekv~l~~~~d~~Pfv~LAFKle 347 (721)
T KOG0465 268 QLKAAIRRATIKRSFVPVLCGSALKNKGVQPLLDAVVDYLPSPSEVENYALNKETNSKEKVTLSPSRDKDPFVALAFKLE 347 (721)
T ss_pred HHHHHHHHHHHHCCEEEEEECHHHCCCCCCHHHHHHHHHCCCHHHHCCCCCCCCCCCCCCEEECCCCCCCCEEEEEEEEE
T ss_conf 99999998875155246775322235674158999987679936624510256788866467522788996033577764
Q ss_pred ECCCCCEEEEEEECCCCCCCCCEEEEECCCCCCCCCCCCCCCCC-EEEEHHCCCCCHHHHHHCCCCCCCCCCCCEECCCC
Q ss_conf 14757259999816987355845887335564210122233554-12401012471233220110024444542000466
Q gi|254780321|r 209 YNSYLGVMVLVRIINGQLTKGQSIRLMGTNAKYQVERIGILTPK-MIDIEALYPGEIGVMIASIKEVSHTRVGDTITDDS 287 (606)
Q Consensus 209 ~D~~~G~I~~~RV~sG~lk~Gd~I~~~~~g~~~~v~~ig~~~~~-~~~v~~l~aGdVG~ii~gik~l~~~~vGDTl~~~~ 287 (606)
.++| |.+.|+|||+|+|++|+.|++.+++++.++.++..++.. +.++++++|||||++ . ++ ++..|||+++..
T Consensus 348 ~g~f-GqLTyvRvYqG~L~kG~~iyN~rtgKKvrv~RL~rmHa~~medV~~v~AG~I~al-f---Gi-dcasGDTftd~~ 421 (721)
T KOG0465 348 EGRF-GQLTYVRVYQGTLSKGDTIYNVRTGKKVRVGRLVRMHANDMEDVNEVLAGDICAL-F---GI-DCASGDTFTDKQ 421 (721)
T ss_pred ECCC-CCEEEEEEEEEEECCCCEEEECCCCCEEEHHHHHHHCCCCCCCCCEEECCCEEEE-E---CC-CCCCCCEECCCC
T ss_conf 1674-5269999862166478678734778544667787750254452000102766888-5---23-335687122676
Q ss_pred CCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCC--CCCCCCCCCEEEEEECCHHHHHHHHHHHH
Q ss_conf 7853236455222212664212677024578899998886411221112--56760004202899637678988898886
Q gi|254780321|r 288 SPTTSALPGFKPIQPVVFCGLFPVDATQFENLRTAINKLRLNDASFSFE--LENSTALGFGFRCGFLGLLHLEIIQERLE 365 (606)
Q Consensus 288 ~p~~~~Lp~~~~~~P~v~~~i~p~~~~d~~~L~~aL~kL~~~D~sl~~e--~Ets~aLg~Gfr~gglG~LHLeVi~eRL~ 365 (606)
+- .-.+..+.+|+|++++++.|.+.+|.+++.+||.|+..|||||++. +|+.+++ ++|||||||||..|||+
T Consensus 422 ~~-~~~m~si~vPePVis~aikP~sk~d~~~fskaL~rf~~EDPtFrv~~D~E~kqTv-----IsGMGELHLEIy~eRl~ 495 (721)
T KOG0465 422 NL-ALSMESIHIPEPVISVAIKPVNKKDADNFSKALNRFTKEDPTFRVSLDPEMKQTV-----ISGMGELHLEIYVERLV 495 (721)
T ss_pred CC-CCEEEEEECCCCEEEEEECCCCCCCHHHHHHHHHHHCCCCCCEEEEECCCCCCEE-----HHCCCHHHHHHHHHHHH
T ss_conf 56-6125676669872788732367441789999997642249955888656556420-----10430356899999999
Q ss_pred HHCCCEEEEECCCCCEE---------------------------------------------------------------
Q ss_conf 64495069737823303---------------------------------------------------------------
Q gi|254780321|r 366 REFSLNLIGTSPSVVYE--------------------------------------------------------------- 382 (606)
Q Consensus 366 rEfg~ev~~t~P~V~Yk--------------------------------------------------------------- 382 (606)
|||++++++++|+|.||
T Consensus 496 rEy~~~~~~Gkp~VayRETi~~~~~f~~~hKkqSgG~gqy~kv~g~~epl~~~~~~~~eF~~~~~g~~~P~~f~pa~ekg 575 (721)
T KOG0465 496 REYKVDAELGKPQVAYRETITSPVEFDYTHKKQSGGAGQYGKVEGVIEPLPPGSNEKFEFSDEIVGGNVPKQFIPAVEKG 575 (721)
T ss_pred HHHCCCCCCCCCEEEEHHHCCCCCCCEEEECCCCCCCCCCCCEEEEEEECCCCCCCEEEEEECCCCCCCCHHHHHHHHHH
T ss_conf 98589640288336520121775543144024668876545114687624898872389971366898855577889889
Q ss_pred -------------------EEEECCCEEECCC-HHHCCCHH--HHH--------HHHCCEEEEEEEECCCCCHHHHHHHH
Q ss_conf -------------------3531564541269-66625867--788--------86232699999808310003899988
Q gi|254780321|r 383 -------------------LYMHDGSMQKLSN-PIDMPEVT--KIA--------ELREPWIQVTIITPNEYLGSILKLCQ 432 (606)
Q Consensus 383 -------------------v~~~dG~~~~Vd~-p~~~p~~~--~i~--------~i~EPi~~~~I~~P~ey~G~Vm~~l~ 432 (606)
..+.||.+|+||| +..|-.++ .+. .++||||+++|.+|+||+|.|+++++
T Consensus 576 ~~e~~~~G~L~ghpl~~~r~~l~Dga~h~vds~elaf~~at~~a~r~a~~~a~p~iLEPIM~Vevt~P~EfqG~Vi~~L~ 655 (721)
T KOG0465 576 FEEIVAKGPLIGHPLSNLRIVLQDGAHHPVDSSELAFMKATRNAFREAFKRAPPRILEPIMNVEVTTPEEFQGTVIGDLN 655 (721)
T ss_pred HHHHHHCCCCCCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEECCEEEEEECCHHHHHHHHHHHH
T ss_conf 99998569756870245189983488676650079999999999999987489402101013578465455235654455
Q ss_pred HHHHEEECCCCCCCEEEEEEEECHHHHHHHHHHHHHHHCCCEEEEEEEECCCEEC
Q ss_conf 6300142443368369999996043332204687676357418889854354643
Q gi|254780321|r 433 ERRGIQIDMSHLDNRAMIVYELPLNEVIFDFYDRLKSVSKGYASFDYNVIDYRDS 487 (606)
Q Consensus 433 ~RRG~~~~m~~~~~~~~i~~~vPl~Eli~~f~~~LkS~T~G~as~~ye~~~Y~~~ 487 (606)
+|+|.+.+.+.-++...|.+++||++| |+|.+.|+|+|+|.|.|+||+++|.|.
T Consensus 656 kR~a~I~~~d~~~~~~ti~A~VPL~~m-fgYss~LRslTqGkgeftMeys~y~p~ 709 (721)
T KOG0465 656 KRKAQITGIDSSEDYKTIKAEVPLNEM-FGYSSELRSLTQGKGEFTMEYSRYSPV 709 (721)
T ss_pred HCCCEEECCCCCCCEEEEEECCCHHHH-HHHHHHHHHHHCCCCEEEEEECCCCCC
T ss_conf 446379512477843999952667887-433466455526864378741124789
No 16
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=100.00 E-value=0 Score=670.48 Aligned_cols=358 Identities=25% Similarity=0.446 Sum_probs=312.2
Q ss_pred CHHHCEEEEEECCCCCCHHHHHHHHHHHCCCCCCCC-------CCCEEECCCHHHHHHCCEEEEEEEEEEEECCCCCEEE
Q ss_conf 852531799980138987788999999829805444-------4311305867798719505232799997437884389
Q gi|254780321|r 7 PLSRIRNFSIVAHIDHGKSTLADRFIQHCRGLTERE-------MSSQVLDNMDIERERGITIKAQTVRLNYTSTDAKDYQ 79 (606)
Q Consensus 7 p~~~IRN~~IiaHvDhGKTTL~d~lL~~tg~i~~~~-------~~~~vlD~~~~EreRGITIka~~~~~~~~~~~~~~y~ 79 (606)
.+++|||||||||+|||||||+|+||+.+|+|.+.+ .++.++|||++||||||||.|+.+++.| ++|+
T Consensus 6 ei~~~RniaIi~H~dAGKTTLtE~lL~~~GaI~~~G~V~~~~~~~~~~sD~~~~E~~RgiSI~ssv~~~e~-----~~~~ 80 (526)
T PRK00741 6 EVAKRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPY-----RDCL 80 (526)
T ss_pred HHHCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCEEECCCCCCCCCCCCCHHHHHCCCEEECCEEEEEE-----CCEE
T ss_conf 87611779999378989899999999746752448466314678864678858899759648615177867-----8989
Q ss_pred EEEEECCCCCHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 99961787300279999999730268999986878865589999999970996799832678875321133888775553
Q gi|254780321|r 80 LNLIDTPGHVDFTYEVSRSLSACEGSLLVVDATQGVEAQTLANVYQAIDNNHEIITVLNKADLPSADPDRVKKQIEETIG 159 (606)
Q Consensus 80 iNlIDTPGH~DF~~EV~r~l~a~dgaiLvVdA~~Gvq~QT~~~~~~A~~~~l~~I~viNKiD~~~A~~e~v~~ei~~~~g 159 (606)
|||||||||+||++||+|+|+|+||||+||||++|||+||+..|..|.++++|+|+||||||+++||+.++.++|++.+|
T Consensus 81 iNliDTPGh~DF~~e~~raL~a~D~Av~Vida~~GVe~qTe~~w~~~~~~~iP~i~FINKmDR~~ad~~~~l~ei~~~lg 160 (526)
T PRK00741 81 INLLDTPGHEDFSEDTYRTLTAVDSALMVIDAAKGVEPQTRKLMEVCRLRDTPIFTFINKLDRDGREPLELLDEIEEVLG 160 (526)
T ss_pred EEEEECCCCHHHHHHHHHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHHC
T ss_conf 99990989467789999999873759999977755233368999998863998899996567678987898877888747
Q ss_pred HHH-----------------------------------------------------------------------------
Q ss_conf 223-----------------------------------------------------------------------------
Q gi|254780321|r 160 IST----------------------------------------------------------------------------- 162 (606)
Q Consensus 160 ~~~----------------------------------------------------------------------------- 162 (606)
..+
T Consensus 161 ~~~~p~~~Pig~g~~F~GvvDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ee~el~~~~~~~~d~ 240 (526)
T PRK00741 161 IACAPITWPIGMGKRFKGVYDLYNDEVELYQPGHGHTIQEFEIIKGLDNPELDEALGEDLAEQLREELELVQGASNEFDL 240 (526)
T ss_pred CCCEEEEEECCCCCCEEEEEEECCCEEEECCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCH
T ss_conf 87368883036788603788801387998036778840466058778778999875389999755357777315551068
Q ss_pred H--------HHHHHHHHCCCCCCHHHHHHHHHHHCCCCHH-------HHHCCCCCCCCCEE--ECC-CCCEEEEEEECCC
Q ss_conf 2--------1000111002232006787763210001111-------22012331012101--147-5725999981698
Q gi|254780321|r 163 E--------DALLVSAKTGEGIPLLLERIVQQLPSPTSPE-------GANAPLKALLIDSW--YNS-YLGVMVLVRIING 224 (606)
Q Consensus 163 ~--------~ii~vSAktG~GV~~LLd~Iv~~iP~P~~~~-------~~~~Pl~alVfds~--~D~-~~G~I~~~RV~sG 224 (606)
+ .++++||.++.||++|||+|++++|+|.... ..+.||.|+|||+. .|| |+|+++|+||+||
T Consensus 241 ~~~~~G~l~PVf~GSA~~n~GV~~LLd~iv~~~PsP~~r~~~~~~v~p~~~~fsa~VFKiqanmDP~h~griaf~RV~SG 320 (526)
T PRK00741 241 EAFLAGELTPVFFGSALNNFGVQEFLDAFVEWAPAPQPRQTDERVVEPTEEKFSGFVFKIQANMDPKHRDRIAFMRVCSG 320 (526)
T ss_pred HHHHCCCEEEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCEEEEEEEEEE
T ss_conf 99973980289962000365699999999997799877777765447877774359999984037542543799997511
Q ss_pred CCCCCCEEEEECCCCCCCCCCCCCCC-CCEEEEHHCCCCCHHHHHHCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCE
Q ss_conf 73558458873355642101222335-54124010124712332201100244445420004667853236455222212
Q gi|254780321|r 225 QLTKGQSIRLMGTNAKYQVERIGILT-PKMIDIEALYPGEIGVMIASIKEVSHTRVGDTITDDSSPTTSALPGFKPIQPV 303 (606)
Q Consensus 225 ~lk~Gd~I~~~~~g~~~~v~~ig~~~-~~~~~v~~l~aGdVG~ii~gik~l~~~~vGDTl~~~~~p~~~~Lp~~~~~~P~ 303 (606)
+++.|+++++.++|++.++.++..|. .++.+++++.|||| .|+.++..+++|||||+.+... ++++..+.|.
T Consensus 321 ~l~~g~~v~n~r~gk~eri~~l~~~~g~~r~~V~ea~AGDI----vgl~~~~~~~tGDTL~~~~~l~---~~~Ip~f~P~ 393 (526)
T PRK00741 321 KFEKGMKVRHVRTGKDVRISNALTFMAQDREHVEEAYAGDI----IGLHNHGTIQIGDTFTEGEKLK---FTGIPNFAPE 393 (526)
T ss_pred EECCCCEEEECCCCCEEEHHHHHHHHCCCCEEEEEECCCCE----EEECCCCCCCCCCEECCCCCCC---CCCCCCCCCC
T ss_conf 88579989852579536632677874435235138769989----9971666300375520688521---0688999975
Q ss_pred EEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCC-CCCCCCCCCEEEEEECCHHHHHHHHHHHHHHCCCEEEEECCCCCE
Q ss_conf 664212677024578899998886411221112-567600042028996376789888988866449506973782330
Q gi|254780321|r 304 VFCGLFPVDATQFENLRTAINKLRLNDASFSFE-LENSTALGFGFRCGFLGLLHLEIIQERLEREFSLNLIGTSPSVVY 381 (606)
Q Consensus 304 v~~~i~p~~~~d~~~L~~aL~kL~~~D~sl~~e-~Ets~aLg~Gfr~gglG~LHLeVi~eRL~rEfg~ev~~t~P~V~Y 381 (606)
+|+++.|.++.+.++|..+|.+|+++|++..+. .+|++.+ +||+|+|||||+++||+||||+|+.+.+.....
T Consensus 394 ~~~~v~~~~~~~~kkl~~gL~~L~EEd~~~v~~~~~t~e~i-----l~gmGeLHlEVv~~RLk~eygVev~~e~~~~~~ 467 (526)
T PRK00741 394 LFRRVRLKNPLKQKQLQKGLVQLSEEGAVQVFRPLSNNDLI-----LGAVGQLQFEVVAHRLKNEYNVEAIYEPVGVAT 467 (526)
T ss_pred EEEEEEECCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCEE-----EEEECHHHHHHHHHHHHHHHCCEEEECCCCEEE
T ss_conf 57998879888899999999985547866988738899889-----997168899999999988739728971574379
No 17
>TIGR00490 aEF-2 translation elongation factor aEF-2; InterPro: IPR004543 Translation elongation factors are responsible for two main processes during protein synthesis on the ribosome , , . EF1A (or EF-Tu) is responsible for the selection and binding of the cognate aminoacyl-tRNA to the A-site (acceptor site) of the ribosome. EF2 (or EF-G) is responsible for the translocation of the peptidyl-tRNA from the A-site to the P-site (peptidyl-tRNA site) of the ribosome, thereby freeing the A-site for the next aminoacyl-tRNA to bind. Elongation factors are responsible for achieving accuracy of translation and both EF1A and EF2 are remarkably conserved throughout evolution. Elongation factor EF2 (EF-G) is a G-protein. It brings about the translocation of peptidyl-tRNA and mRNA through a ratchet-like mechanism: the binding of GTP-EF2 to the ribosome causes a counter-clockwise rotation in the small ribosomal subunit; the hydrolysis of GTP to GDP by EF2 and the subsequent release of EF2 causes a clockwise rotation of the small subunit back to the starting position , . This twisting action destabilises tRNA-ribosome interactions, freeing the tRNA to translocate along the ribosome upon GTP-hydrolysis by EF2. EF2 binding also affects the entry and exit channel openings for the mRNA, widening it when bound to enable the mRNA to translocate along the ribosome. This entry represents archaeal EF2 proteins (also known as aEF2), which are more similar to eukaryotic EF2 than to bacterial EF2 (or EFG), both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD. More information about these proteins can be found at Protein of the Month: Elongation Factors .; GO: 0003746 translation elongation factor activity, 0005525 GTP binding, 0006414 translational elongation, 0005737 cytoplasm.
Probab=100.00 E-value=0 Score=592.98 Aligned_cols=466 Identities=27% Similarity=0.464 Sum_probs=393.9
Q ss_pred HHHCEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCC-EEECCCHHHHHHCCEEEEEEEEEEEECCCCCEEEEEEEECC
Q ss_conf 52531799980138987788999999829805444431-13058677987195052327999974378843899996178
Q gi|254780321|r 8 LSRIRNFSIVAHIDHGKSTLADRFIQHCRGLTEREMSS-QVLDNMDIERERGITIKAQTVRLNYTSTDAKDYQLNLIDTP 86 (606)
Q Consensus 8 ~~~IRN~~IiaHvDhGKTTL~d~lL~~tg~i~~~~~~~-~vlD~~~~EreRGITIka~~~~~~~~~~~~~~y~iNlIDTP 86 (606)
.+.|||++|+||+|||||||+|.||.-+|.++..-+++ .+||+.+.|++|||||.|.++++-+. ++|++|.|||||||
T Consensus 16 ~~~irniGi~ahidhGkttlsdnllaGaGmis~elaG~q~~ldfde~e~~rGiti~aanvsmvh~-yeG~~ylinlidtP 94 (724)
T TIGR00490 16 PEFIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGEQLYLDFDEQEQERGITIDAANVSMVHE-YEGNEYLINLIDTP 94 (724)
T ss_pred HHHHHHEEEEEEECCCCCHHHHHHHHCCCHHHHHHCCCCEEECCCHHHHHCCCEEEEEEEEEEEE-ECCCCEEEEEECCC
T ss_conf 12221000378631775112234442133234540564100024413523772676411567653-14750243331488
Q ss_pred CCCHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCHHHHHH-----------
Q ss_conf 730027999999973026899998687886558999999997099679983267887532113388877-----------
Q gi|254780321|r 87 GHVDFTYEVSRSLSACEGSLLVVDATQGVEAQTLANVYQAIDNNHEIITVLNKADLPSADPDRVKKQIE----------- 155 (606)
Q Consensus 87 GH~DF~~EV~r~l~a~dgaiLvVdA~~Gvq~QT~~~~~~A~~~~l~~I~viNKiD~~~A~~e~v~~ei~----------- 155 (606)
||+||+|+|.|+++|+||+++||+|.+|++|||..+++.|+..+++++.||||+|+--.+.+-..+++.
T Consensus 95 GhvdfGGdvtramra~dG~~vvv~aveG~mPqtetvlrqal~e~v~Pvlf~nkvdrli~el~l~~~~lq~r~~k~i~~~n 174 (724)
T TIGR00490 95 GHVDFGGDVTRAMRAVDGAIVVVCAVEGVMPQTETVLRQALKENVKPVLFINKVDRLINELKLTPEELQERLIKIIAEVN 174 (724)
T ss_pred CCCCCCCHHHHHHHHHCCEEEEEEECCCCCCCHHHHHHHHHHHCCCEEEEEHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf 62105624888877647638999502565761578999998731870677234788888624688899999999999999
Q ss_pred HHH-HHHHH-------------HHHHHHH------------HCCCCC----------------------CHHHHHHHHHH
Q ss_conf 555-32232-------------1000111------------002232----------------------00678776321
Q gi|254780321|r 156 ETI-GISTE-------------DALLVSA------------KTGEGI----------------------PLLLERIVQQL 187 (606)
Q Consensus 156 ~~~-g~~~~-------------~ii~vSA------------ktG~GV----------------------~~LLd~Iv~~i 187 (606)
.++ .+.++ .+-+.|| ++|++. +-+|+.++.++
T Consensus 175 ~li~~m~P~~~~~~W~~~v~~Gs~afGsa~~nWa~~vP~~~~~Gi~f~~~~~~~~e~~~~ela~k~Pl~~v~l~mv~~hl 254 (724)
T TIGR00490 175 KLIKKMAPEEFKDKWKVRVEDGSVAFGSAYYNWAISVPIMKKTGITFKDIYKYIKEDKQKELAKKAPLHQVVLDMVIKHL 254 (724)
T ss_pred HHHHHCCCCCHHCCCEEEECCCCCHHHHHHHHHEEECCCCCCCCCCHHHHHHHHHCCHHHHHHHHCCHHHHHHHHHHHHC
T ss_conf 99974176100000047651564101122210002044300137759999998630114557640658899999999744
Q ss_pred HCCCCH-----------------------HHHHCCCCCCCCCEEECCCCCEEEEEEECCCCCCCCCEEEEECCCCCCCCC
Q ss_conf 000111-----------------------122012331012101147572599998169873558458873355642101
Q gi|254780321|r 188 PSPTSP-----------------------EGANAPLKALLIDSWYNSYLGVMVLVRIINGQLTKGQSIRLMGTNAKYQVE 244 (606)
Q Consensus 188 P~P~~~-----------------------~~~~~Pl~alVfds~~D~~~G~I~~~RV~sG~lk~Gd~I~~~~~g~~~~v~ 244 (606)
|+|... .||++|+..+|.+...|++.|.|+.+|+|+|.++.|+.++++....+.++.
T Consensus 255 PsP~e~q~~r~~~~W~Gd~~se~G~am~~~dP~GP~a~~~t~~~~~~~aG~~~~~r~y~G~i~~G~e~y~v~~~~k~~~q 334 (724)
T TIGR00490 255 PSPAEAQKYRIPVIWKGDLNSEAGKAMLNCDPEGPLAVMITKIVVDKHAGEVAVGRLYSGAIKKGSEVYLVDRKAKARIQ 334 (724)
T ss_pred CCCHHHHHHHHHHHEECCCCCHHCCHHCCCCCCCCEEEEEEEEEEECCCCCEEEEEEECCEECCCCEEEEECCHHHCCEE
T ss_conf 89622444010010104654000542100489986144556556603668167755531500368668986430002112
Q ss_pred CCCC-CCCCEEEEHHCCCCCHHHHHHCCCCCCCCCCCCEECCCCCCCCCCCCCCC-CCCCEEEEEECCCCHHHHHHHHHH
Q ss_conf 2223-35541240101247123322011002444454200046678532364552-222126642126770245788999
Q gi|254780321|r 245 RIGI-LTPKMIDIEALYPGEIGVMIASIKEVSHTRVGDTITDDSSPTTSALPGFK-PIQPVVFCGLFPVDATQFENLRTA 322 (606)
Q Consensus 245 ~ig~-~~~~~~~v~~l~aGdVG~ii~gik~l~~~~vGDTl~~~~~p~~~~Lp~~~-~~~P~v~~~i~p~~~~d~~~L~~a 322 (606)
++++ ++|+++++|++.||.|.+ +.+++++..|+|+|+.... ..|+.+++ ..+|+|.++++.+|+.|..+|-+.
T Consensus 335 ~v~~ymGP~r~~~d~~~aGni~a----~~G~k~a~aG~t~C~~~~~-~~~fe~~~h~sePv~t~a~eakn~~dlPkliev 409 (724)
T TIGR00490 335 QVGVYMGPERVEVDEIPAGNIVA----VVGLKEAVAGETICSTDKK-IKPFEAIKHISEPVVTVAIEAKNTKDLPKLIEV 409 (724)
T ss_pred EEEEEECCEECCCCCCCCCCEEE----EEECCCCCCCCCCCCCHHH-HHHHHHHHHCCCCEEEEEEECCCCCCCHHHHHH
T ss_conf 46677667020124226775688----7403211145300252123-213343232047537999714675440589999
Q ss_pred HHHHHHHCCCCCCC--CCCCCCCCCEEEEEECCHHHHHHHHHHHHHH-CCCEEEEECCCCCEEEEEECCCEEECC--CHH
Q ss_conf 98886411221112--5676000420289963767898889888664-495069737823303353156454126--966
Q gi|254780321|r 323 INKLRLNDASFSFE--LENSTALGFGFRCGFLGLLHLEIIQERLERE-FSLNLIGTSPSVVYELYMHDGSMQKLS--NPI 397 (606)
Q Consensus 323 L~kL~~~D~sl~~e--~Ets~aLg~Gfr~gglG~LHLeVi~eRL~rE-fg~ev~~t~P~V~Ykv~~~dG~~~~Vd--~p~ 397 (606)
|.++..+||+++++ .||.+.| +||+|+|||||..++..++ +++++.++.|-|.||.|...-+ -.|+ ||.
T Consensus 410 lr~~~~edPt~~~~~neetGehl-----~sGmGelh~e~~~~~~~~~~~~~~~~~~~Pivv~retv~G~~-~~ve~ksPn 483 (724)
T TIGR00490 410 LRQVAKEDPTVKVEINEETGEHL-----ISGMGELHLEIIVKKIREKDAGVEVETSEPIVVYRETVTGTS-PVVEGKSPN 483 (724)
T ss_pred HHHHHCCCCEEEEEEECCCCCHH-----HHCCCHHHHHHHHHHHHHHHCCCEEEECCCEEEEECCCCCCC-CCCCCCCCC
T ss_conf 99741349727999704445123-----312222334556656644112303764485689710104766-632577872
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q gi|254780321|r 398 -------------------------------------------------------------------------------- 397 (606)
Q Consensus 398 -------------------------------------------------------------------------------- 397 (606)
T Consensus 484 khn~~y~~~eP~~~~v~q~~~eG~~~~~~~~~k~~~~~~~~l~~aG~~~eea~~~~~~ye~n~~~~~t~Gi~~l~e~~el 563 (724)
T TIGR00490 484 KHNRFYIVVEPLEESVLQAFKEGKIKDVKVKKKLDDEIAKELIEAGLDKEEAKRVEEVYEGNLFINVTRGIQYLDEVKEL 563 (724)
T ss_pred CCCEEEEEEECCHHHHHHHHHCCCCEEHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCEEEEHHHHHHHHHHHHHH
T ss_conf 21547899806337999886358500013444567899999987278867888999874053134224557889999999
Q ss_pred -----------------------------------------HC-CCH-HHH--------HHHHCCEEEEEEEECCCCCHH
Q ss_conf -----------------------------------------62-586-778--------886232699999808310003
Q gi|254780321|r 398 -----------------------------------------DM-PEV-TKI--------AELREPWIQVTIITPNEYLGS 426 (606)
Q Consensus 398 -----------------------------------------~~-p~~-~~i--------~~i~EPi~~~~I~~P~ey~G~ 426 (606)
.+ |.. ..| ..++||+-.+.|.+|.+|+|.
T Consensus 564 ~~~Gf~~am~~GP~a~e~~~G~k~kl~d~~~heda~hrGPaq~~Pa~r~~i~~a~~~a~P~lleP~q~~~i~~Pqd~mG~ 643 (724)
T TIGR00490 564 ILEGFKEAMRNGPVAKEKVMGVKVKLVDAKLHEDAVHRGPAQVIPAVRKGIFAAMLQAEPVLLEPIQKVFINVPQDFMGA 643 (724)
T ss_pred HHHHHHHHHHCCCCCCCCCCEEEEEEEEEEECHHHHCCCCHHHHHHHHHHHHHHHHHCCCCHHCCCEEEEEECCHHHHHH
T ss_conf 99989999742884210334058998631100223124702565888999999885058502132100134155145567
Q ss_pred HHHHHHHHHHEEECCCCCCCEEEEEEEECHHHHHHHHHHHHHHHCCCEEEEEEEECCCEE
Q ss_conf 899988630014244336836999999604333220468767635741888985435464
Q gi|254780321|r 427 ILKLCQERRGIQIDMSHLDNRAMIVYELPLNEVIFDFYDRLKSVSKGYASFDYNVIDYRD 486 (606)
Q Consensus 427 Vm~~l~~RRG~~~~m~~~~~~~~i~~~vPl~Eli~~f~~~LkS~T~G~as~~ye~~~Y~~ 486 (606)
++..++.|||++.+|...|+.+.+.+.+|.+|| |||...+++.|+|++..+.|+.||+.
T Consensus 644 ~~rei~~rrGqi~~m~~eGdm~~~~~~~Pv~em-fGfaG~ir~at~G~~~Ws~e~aG~e~ 702 (724)
T TIGR00490 644 ATREIQNRRGQILEMKQEGDMVTIKAKVPVAEM-FGFAGAIRGATEGRCLWSTEFAGFEK 702 (724)
T ss_pred HHHHHHCCCCCEEEEECCCCEEEEEECCCHHHH-HCCCCCCCCCCCCCEEEEECCCCHHH
T ss_conf 887651257517764047857999724775774-02100101235772466411011453
No 18
>KOG0464 consensus
Probab=100.00 E-value=0 Score=598.45 Aligned_cols=470 Identities=29% Similarity=0.434 Sum_probs=388.6
Q ss_pred CCCCHHHCEEEEEECCCCCCHHHHHHHHHHHCCCCCCC---CCCCEEECCCHHHHHHCCEEEEEEEEEEEECCCCCEEEE
Q ss_conf 89985253179998013898778899999982980544---443113058677987195052327999974378843899
Q gi|254780321|r 4 KPTPLSRIRNFSIVAHIDHGKSTLADRFIQHCRGLTER---EMSSQVLDNMDIERERGITIKAQTVRLNYTSTDAKDYQL 80 (606)
Q Consensus 4 ~~~p~~~IRN~~IiaHvDhGKTTL~d~lL~~tg~i~~~---~~~~~vlD~~~~EreRGITIka~~~~~~~~~~~~~~y~i 80 (606)
.+-|+.+||||+||||+|+||||.+||+||.+|.+..- +.+++|.|+|++||||||||.|.++.+ +|+.|++
T Consensus 30 ~~p~~akirnigiiahidagktttterily~ag~~~s~g~vddgdtvtdfla~erergitiqsaav~f-----dwkg~ri 104 (753)
T KOG0464 30 INPAIAKIRNIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITIQSAAVNF-----DWKGHRI 104 (753)
T ss_pred CCCCHHHHHCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCEEEEEEEEC-----CCCCCEE
T ss_conf 99836664113069985178740678899774022104656788537788888886483665404421-----2356167
Q ss_pred EEEECCCCCHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 99617873002799999997302689999868788655899999999709967998326788753211338887755532
Q gi|254780321|r 81 NLIDTPGHVDFTYEVSRSLSACEGSLLVVDATQGVEAQTLANVYQAIDNNHEIITVLNKADLPSADPDRVKKQIEETIGI 160 (606)
Q Consensus 81 NlIDTPGH~DF~~EV~r~l~a~dgaiLvVdA~~Gvq~QT~~~~~~A~~~~l~~I~viNKiD~~~A~~e~v~~ei~~~~g~ 160 (606)
||||||||+||.-||+|.+++.|||+.|+||..||||||..+|+.|-+.++|.+.||||||+-+|+++...+.|++.++.
T Consensus 105 nlidtpghvdf~leverclrvldgavav~dasagve~qtltvwrqadk~~ip~~~finkmdk~~anfe~avdsi~ekl~a 184 (753)
T KOG0464 105 NLIDTPGHVDFRLEVERCLRVLDGAVAVFDASAGVEAQTLTVWRQADKFKIPAHCFINKMDKLAANFENAVDSIEEKLGA 184 (753)
T ss_pred EEECCCCCCEEEEEHHHHHHHHCCEEEEEECCCCCCCCEEEEEHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 65248884037987898887750738998456776641221000301357845330234666555466688999987387
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q gi|254780321|r 161 -------------------------------------------------------------------------------- 160 (606)
Q Consensus 161 -------------------------------------------------------------------------------- 160 (606)
T Consensus 185 k~l~l~lpi~eak~fnkg~ldil~ke~l~~ncnsndgkd~e~~plle~ndpel~e~~ae~knal~~qlad~~~dfad~~l 264 (753)
T KOG0464 185 KALKLQLPIGEAKGFNKGFLDILHKEKLLGNCNSNDGKDFENKPLLEKNDPELAEELAEAKNALCEQLADLDADFADKFL 264 (753)
T ss_pred CEEEEEECCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH
T ss_conf 41789701553245440279998874345777887544445786423489789999999999999988611277899999
Q ss_pred ----------HHH----------------HHHHHHHHCCCCCCHHHHHHHHHHHCCCCHH-----HHHCCCCCCCCCEEE
Q ss_conf ----------232----------------1000111002232006787763210001111-----220123310121011
Q gi|254780321|r 161 ----------STE----------------DALLVSAKTGEGIPLLLERIVQQLPSPTSPE-----GANAPLKALLIDSWY 209 (606)
Q Consensus 161 ----------~~~----------------~ii~vSAktG~GV~~LLd~Iv~~iP~P~~~~-----~~~~Pl~alVfds~~ 209 (606)
+.+ .+++.||.++.||++|||++.-|+|+|.... .-...|+|+.|+...
T Consensus 265 def~~n~d~i~a~elksai~~lt~aq~a~~i~cgsaiknkgiqplldavtmylpspeernyeflqwykddlcalafkvlh 344 (753)
T KOG0464 265 DEFDENFDKIDAEELKSAIHELTCAQKAAPILCGSAIKNKGIQPLLDAVTMYLPSPEERNYEFLQWYKDDLCALAFKVLH 344 (753)
T ss_pred HHHHCCCCCCCHHHHHHHHHHHHHHHHHCCEEHHHHHCCCCCCCHHHHHHHCCCCHHHCCHHHHHHHHHHHHHHHHHHHC
T ss_conf 87505533467899999999986663201222003440367651233443226883540227776520137777666530
Q ss_pred CCCCCEEEEEEECCCCCCCCCEEEEECCCCCCCCCCCCC-CCCCEEEEHHCCCCCHHHHHHCCCCCCCCCCCCEECCCCC
Q ss_conf 475725999981698735584588733556421012223-3554124010124712332201100244445420004667
Q gi|254780321|r 210 NSYLGVMVLVRIINGQLTKGQSIRLMGTNAKYQVERIGI-LTPKMIDIEALYPGEIGVMIASIKEVSHTRVGDTITDDSS 288 (606)
Q Consensus 210 D~~~G~I~~~RV~sG~lk~Gd~I~~~~~g~~~~v~~ig~-~~~~~~~v~~l~aGdVG~ii~gik~l~~~~vGDTl~~~~~ 288 (606)
|..||.++|.|||+|+++.+..|.+.+...++.+.++.. |.-+..+++.+.||.|. +++ +++.+.+|||+...+.
T Consensus 345 dkqrg~l~fmriysgsi~~~~ai~nin~~~se~~~kl~~pfade~~~i~qlsagnia-lt~---glk~tatgdtivaska 420 (753)
T KOG0464 345 DKQRGPLSFMRIYSGSIHNNLAIFNINGMCSEGILKLFLPFADEHREIEQLSAGNIA-LTA---GLKHTATGDTIVASKA 420 (753)
T ss_pred CCCCCCEEEEEEECCCCCCCEEEEECCCCCCCCHHHHHCCCHHHHHHHHHCCCCCEE-EEE---CCEEECCCCEEEECCH
T ss_conf 013486268998615446761366226653311176535541543102120346479-995---0143125776883305
Q ss_pred C----------------------CCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCC--CCCCCCCCC
Q ss_conf 8----------------------5323645522221266421267702457889999888641122111--256760004
Q gi|254780321|r 289 P----------------------TTSALPGFKPIQPVVFCGLFPVDATQFENLRTAINKLRLNDASFSF--ELENSTALG 344 (606)
Q Consensus 289 p----------------------~~~~Lp~~~~~~P~v~~~i~p~~~~d~~~L~~aL~kL~~~D~sl~~--e~Ets~aLg 344 (606)
. ...-+.|++.|.|+.|+.|+|-+-+....+..||+.|+.+|||+.+ .+++.++.
T Consensus 421 sa~aa~qk~~~egekk~~q~~daerll~agie~pd~vffc~iepps~~k~~d~ehale~lqredpslkir~d~dsgqti- 499 (753)
T KOG0464 421 SAEAAAQKAAGEGEKKHLQNKDAERLLFAGIEIPDAVFFCCIEPPSLRKLNDFEHALECLQREDPSLKIRFDPDSGQTI- 499 (753)
T ss_pred HHHHHHHHHHCCCHHHCCCCCCCCCEEEECCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHCCCCCEEEEECCCCCCEE-
T ss_conf 4899999861452343058764000256135578736899525853232134899999873238761687668888668-
Q ss_pred CEEEEEECCHHHHHHHHHHHHHHCCCEEEEECCCCCEEEEEEC----------C---CEEE----C-----CCHHHCCC-
Q ss_conf 2028996376789888988866449506973782330335315----------6---4541----2-----69666258-
Q gi|254780321|r 345 FGFRCGFLGLLHLEIIQERLEREFSLNLIGTSPSVVYELYMHD----------G---SMQK----L-----SNPIDMPE- 401 (606)
Q Consensus 345 ~Gfr~gglG~LHLeVi~eRL~rEfg~ev~~t~P~V~Ykv~~~d----------G---~~~~----V-----d~p~~~p~- 401 (606)
+-|+||||+|++..|++||||+++-+++-+|.||.++.+ | +.|. + ...+.+|.
T Consensus 500 ----l~~~gelhie~ihdrikrey~ldtfig~lqvayre~i~~~lr~t~~ld~~lgdkk~~~~velear~~~tqa~ip~k 575 (753)
T KOG0464 500 ----LCGMGELHIEAIHDRIKREYGLDTFIGKLQVAYREMILEELRATAKLDDGLGDKKHLEFVELEARLEETQAHIPFK 575 (753)
T ss_pred ----EECCCHHHHHHHHHHHHHHCCCHHEEHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEECCCCCCCCCE
T ss_conf ----8506223299999998764073211106889999999998666664402434445633899986404543436513
Q ss_pred --------------------------------------------------------------------------HHHHHH
Q ss_conf --------------------------------------------------------------------------677888
Q gi|254780321|r 402 --------------------------------------------------------------------------VTKIAE 407 (606)
Q Consensus 402 --------------------------------------------------------------------------~~~i~~ 407 (606)
...-..
T Consensus 576 kiefe~~es~n~~~l~~sqeaie~g~~na~~~gpl~g~pi~~v~itl~~~~i~~gk~n~alisac~qkcvqealkkad~~ 655 (753)
T KOG0464 576 KIEFELAESANEGLLDVSQEAIEEGCHNACLNGPLAGSPIHAVAITLHECIIHGGKINPALISACAQKCVQEALKKADKQ 655 (753)
T ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 67763101146134464799998667788856986688502025765777863885788999999999999998666677
Q ss_pred HHCCEEEEEEEECC-CCCHHHHHHHHHHHHEEECCCCCC-CEE-EEEEEECHHHHHHHHHHHHHHHCCCEEEEEEEECCC
Q ss_conf 62326999998083-100038999886300142443368-369-999996043332204687676357418889854354
Q gi|254780321|r 408 LREPWIQVTIITPN-EYLGSILKLCQERRGIQIDMSHLD-NRA-MIVYELPLNEVIFDFYDRLKSVSKGYASFDYNVIDY 484 (606)
Q Consensus 408 i~EPi~~~~I~~P~-ey~G~Vm~~l~~RRG~~~~m~~~~-~~~-~i~~~vPl~Eli~~f~~~LkS~T~G~as~~ye~~~Y 484 (606)
++||.|+++|.+.. +|+.+|..++..|||.+.+++... +.+ ++.+-+||+|+ .+|...|+++|+|+|.|..+|.+|
T Consensus 656 l~eplm~lei~i~~dd~~qpiladl~qrr~~~e~~~aredneirri~~~lplaei-~~~s~~lrtltsg~a~~ale~~~y 734 (753)
T KOG0464 656 LLEPLMELEIEIANDDPLQPILADLAQRRAHFEEIDAREDNEIRRICAFLPLAEI-EGLSKTLRTLTSGFADFALEFRGY 734 (753)
T ss_pred HHHHHHHEEEEEECCCCCCHHHHHHHHHHCCCHHCCCCCCCCHHEEEEEEEHHHH-HCHHHHHHHHHCCCCEEEEEECCH
T ss_conf 7554343289970489753789999986225011134343301314676457895-157888998744661179986001
Q ss_pred EECC
Q ss_conf 6436
Q gi|254780321|r 485 RDSD 488 (606)
Q Consensus 485 ~~~d 488 (606)
+..+
T Consensus 735 qamn 738 (753)
T KOG0464 735 QAMN 738 (753)
T ss_pred HHCC
T ss_conf 3158
No 19
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=0 Score=496.14 Aligned_cols=359 Identities=25% Similarity=0.446 Sum_probs=310.2
Q ss_pred CHHHCEEEEEECCCCCCHHHHHHHHHHHCCCCCCC-------CCCCEEECCCHHHHHHCCEEEEEEEEEEEECCCCCEEE
Q ss_conf 85253179998013898778899999982980544-------44311305867798719505232799997437884389
Q gi|254780321|r 7 PLSRIRNFSIVAHIDHGKSTLADRFIQHCRGLTER-------EMSSQVLDNMDIERERGITIKAQTVRLNYTSTDAKDYQ 79 (606)
Q Consensus 7 p~~~IRN~~IiaHvDhGKTTL~d~lL~~tg~i~~~-------~~~~~vlD~~~~EreRGITIka~~~~~~~~~~~~~~y~ 79 (606)
.+.+-|+||||+|-|+|||||+|.||...|+|... .......|||++||||||+|.|+..++.| +++.
T Consensus 8 Ev~rRRTFAIISHPDAGKTTlTEkLLlfGgaIq~AGtVk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y-----~~~~ 82 (528)
T COG4108 8 EVARRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDY-----ADCL 82 (528)
T ss_pred HHHHHCCEEEEECCCCCCCCHHHHHHHHCCHHHHCCEEEECCCCCCCCCHHHHHHHHCCCEEEEEEEEEEC-----CCEE
T ss_conf 98643403688568888511889999723034305501222577634227788887568558765787603-----8848
Q ss_pred EEEEECCCCCHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 99961787300279999999730268999986878865589999999970996799832678875321133888775553
Q gi|254780321|r 80 LNLIDTPGHVDFTYEVSRSLSACEGSLLVVDATQGVEAQTLANVYQAIDNNHEIITVLNKADLPSADPDRVKKQIEETIG 159 (606)
Q Consensus 80 iNlIDTPGH~DF~~EV~r~l~a~dgaiLvVdA~~Gvq~QT~~~~~~A~~~~l~~I~viNKiD~~~A~~e~v~~ei~~~~g 159 (606)
+||+|||||.||+...+|.|.|+|+||+||||..|+++||+..+..+...++||+.|||||||++-+|-+..+||++.++
T Consensus 83 iNLLDTPGHeDFSEDTYRtLtAvDsAvMVIDaAKGiE~qT~KLfeVcrlR~iPI~TFiNKlDR~~rdP~ELLdEiE~~L~ 162 (528)
T COG4108 83 VNLLDTPGHEDFSEDTYRTLTAVDSAVMVIDAAKGIEPQTLKLFEVCRLRDIPIFTFINKLDREGRDPLELLDEIEEELG 162 (528)
T ss_pred EECCCCCCCCCCCHHHHHHHHHHHEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHHC
T ss_conf 86147998654323678999864104689860358668899999998505984699750236566886899999999857
Q ss_pred HHHH----------------------------------------------------------------------------
Q ss_conf 2232----------------------------------------------------------------------------
Q gi|254780321|r 160 ISTE---------------------------------------------------------------------------- 163 (606)
Q Consensus 160 ~~~~---------------------------------------------------------------------------- 163 (606)
+++.
T Consensus 163 i~~~PitWPIG~gk~F~Gvy~l~~~~v~~y~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~ee~EL~~~a~~~Fd~ 242 (528)
T COG4108 163 IQCAPITWPIGMGKDFKGVYHLYNDEVELYESGHTDQERRADIVKGLDNPELDALLGEDLAEQLREELELVQGAGNEFDL 242 (528)
T ss_pred CCEECCCCCCCCCCCCCEEEEECCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHCHHHHHHHHHHHHHHHHHCCCCCH
T ss_conf 75035524456885643223503587998426777654434444578886777762447999999999999741332088
Q ss_pred ---------HHHHHHHHCCCCCCHHHHHHHHHHHCCCCHHH-------HHCCCCCCCCCEE--ECC-CCCEEEEEEECCC
Q ss_conf ---------10001110022320067877632100011112-------2012331012101--147-5725999981698
Q gi|254780321|r 164 ---------DALLVSAKTGEGIPLLLERIVQQLPSPTSPEG-------ANAPLKALLIDSW--YNS-YLGVMVLVRIING 224 (606)
Q Consensus 164 ---------~ii~vSAktG~GV~~LLd~Iv~~iP~P~~~~~-------~~~Pl~alVfds~--~D~-~~G~I~~~RV~sG 224 (606)
.+++.||.++.||+.+||+++++.|+|..... .+..|.++||+.. +|| ||.+|+++||+||
T Consensus 243 ~~fl~G~~TPVFFGSAl~NFGV~~~L~~~~~~AP~P~~r~~~~~~v~p~e~kfsGFVFKIQANMDp~HRDRIAFmRV~SG 322 (528)
T COG4108 243 EAFLAGELTPVFFGSALGNFGVDHFLDALVDWAPSPRARQADTREVEPTEDKFSGFVFKIQANMDPKHRDRIAFMRVCSG 322 (528)
T ss_pred HHHHCCCCCCEEEHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCEEEEEECCC
T ss_conf 98856960115703323115889999999963899865446667316887754348999974899433420367863056
Q ss_pred CCCCCCEEEEECCCCCCCCCCC-CCCCCCEEEEHHCCCCCHHHHHHCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCE
Q ss_conf 7355845887335564210122-233554124010124712332201100244445420004667853236455222212
Q gi|254780321|r 225 QLTKGQSIRLMGTNAKYQVERI-GILTPKMIDIEALYPGEIGVMIASIKEVSHTRVGDTITDDSSPTTSALPGFKPIQPV 303 (606)
Q Consensus 225 ~lk~Gd~I~~~~~g~~~~v~~i-g~~~~~~~~v~~l~aGdVG~ii~gik~l~~~~vGDTl~~~~~p~~~~Lp~~~~~~P~ 303 (606)
+..+||++...++|+..++... ..|...+..+++++||| |.|+.+....++|||+|..+.-.-.++|.|. |-
T Consensus 323 kferGMk~~~~rtgK~~~ls~~~~f~A~dRe~ve~A~aGD----IIGl~nhGt~~IGDT~t~Ge~~~f~giP~Fa---PE 395 (528)
T COG4108 323 KFERGMKVTHVRTGKDVKLSDALTFMAQDRETVEEAYAGD----IIGLHNHGTIQIGDTFTEGEKLKFTGIPNFA---PE 395 (528)
T ss_pred CCCCCCEEEEEECCCCEEECCCHHHHHHHHHHHHHCCCCC----EEECCCCCCEEECCEECCCCEEEECCCCCCC---HH
T ss_conf 4358865330244872561610767642166575426877----6714678721326663158556536899879---99
Q ss_pred EEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHHHCCCEEEEECCCCCE
Q ss_conf 664212677024578899998886411221112567600042028996376789888988866449506973782330
Q gi|254780321|r 304 VFCGLFPVDATQFENLRTAINKLRLNDASFSFELENSTALGFGFRCGFLGLLHLEIIQERLEREFSLNLIGTSPSVVY 381 (606)
Q Consensus 304 v~~~i~p~~~~d~~~L~~aL~kL~~~D~sl~~e~Ets~aLg~Gfr~gglG~LHLeVi~eRL~rEfg~ev~~t~P~V~Y 381 (606)
+|+.+.-+|...+.+|+.+|.+|++|-..-.|.+..+.. ..+|..|.||+||+++||+.|||+|++..+-.+.+
T Consensus 396 lfrrvrlkd~~K~Kql~Kgl~QL~eEGavQ~f~p~~~~d----~IlGAVG~LQFeV~~~RL~~EY~ve~~~e~~~~~~ 469 (528)
T COG4108 396 LFRRVRLKDPLKQKQLKKGLEQLAEEGAVQVFKPLDGND----LILGAVGQLQFEVVQARLKNEYNVEAVFEPVNFST 469 (528)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHCCEEEEECCCCCCC----CEEEEECCHHHHHHHHHHHHHHCCEEEEEECCCEE
T ss_conf 999886178688899999999986557569960377888----65874100137999999876518707874055148
No 20
>KOG0469 consensus
Probab=100.00 E-value=0 Score=487.72 Aligned_cols=479 Identities=29% Similarity=0.423 Sum_probs=363.0
Q ss_pred HHCEEEEEECCCCCCHHHHHHHHHHHCCCCCC-CCCCCEEECCCHHHHHHCCEEEEEEEEEEEE-----------CCCCC
Q ss_conf 25317999801389877889999998298054-4443113058677987195052327999974-----------37884
Q gi|254780321|r 9 SRIRNFSIVAHIDHGKSTLADRFIQHCRGLTE-REMSSQVLDNMDIERERGITIKAQTVRLNYT-----------STDAK 76 (606)
Q Consensus 9 ~~IRN~~IiaHvDhGKTTL~d~lL~~tg~i~~-~~~~~~vlD~~~~EreRGITIka~~~~~~~~-----------~~~~~ 76 (606)
.||||+++|||||||||||+|.|...+|.|+. +....+++|+-.-|+||||||||.++++.|. ..+++
T Consensus 17 ~NiRNmSVIAHVDHGKSTLTDsLV~kAgIis~akaGe~Rf~DtRkDEQeR~iTIKStAISl~~e~~~~dl~~~k~~~d~~ 96 (842)
T KOG0469 17 KNIRNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGETRFTDTRKDEQERGITIKSTAISLFFEMSDDDLKFIKQEGDGN 96 (842)
T ss_pred CCCCCCEEEEEECCCCCHHHHHHHHHHCEEEECCCCCCCCCCCCCCHHHCCEEEEEEEEEEHHHHHHHHHHHHCCCCCCC
T ss_conf 35442048998437855006778776151241226785124341015655657632013201213176799851778776
Q ss_pred EEEEEEEECCCCCHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCHHHHHHH
Q ss_conf 38999961787300279999999730268999986878865589999999970996799832678875321133888775
Q gi|254780321|r 77 DYQLNLIDTPGHVDFTYEVSRSLSACEGSLLVVDATQGVEAQTLANVYQAIDNNHEIITVLNKADLPSADPDRVKKQIEE 156 (606)
Q Consensus 77 ~y~iNlIDTPGH~DF~~EV~r~l~a~dgaiLvVdA~~Gvq~QT~~~~~~A~~~~l~~I~viNKiD~~~A~~e~v~~ei~~ 156 (606)
.+.|||||.|||+||+.||..+|++.||||.|||+.+||-.||..++.+|+...+++++|+|||||.--+.+--.+++.+
T Consensus 97 ~FLiNLIDSPGHVDFSSEVTAALRVTDGALVVVDcv~GvCVQTETVLrQA~~ERIkPvlv~NK~DRAlLELq~~~EeLyq 176 (842)
T KOG0469 97 GFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAERIKPVLVMNKMDRALLELQLSQEELYQ 176 (842)
T ss_pred CEEEEECCCCCCCCCHHHHHHEEEECCCCEEEEECCCCEEECHHHHHHHHHHHHCCCEEEEEHHHHHHHHHCCCHHHHHH
T ss_conf 33689516898545234423104732670899972474485259999999874335247741466788861378999999
Q ss_pred H-------------------------------------------------------HHHHHH------------------
Q ss_conf 5-------------------------------------------------------532232------------------
Q gi|254780321|r 157 T-------------------------------------------------------IGISTE------------------ 163 (606)
Q Consensus 157 ~-------------------------------------------------------~g~~~~------------------ 163 (606)
. |+++..
T Consensus 177 tf~R~VE~vNviisTy~d~~~g~~~v~P~kg~v~F~SGLhGWaFTlrQFa~~Y~~KF~~~~~kmm~~LWg~~~f~~ktkk 256 (842)
T KOG0469 177 TFQRIVENVNVIISTYGDGPMGDVQVDPEKGTVGFGSGLHGWAFTLRQFAEMYAKKFGIDVRKMMNRLWGDNFFNPKTKK 256 (842)
T ss_pred HHHHHHHCCCEEEEECCCCCCCCEEECCCCCCEEECCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCC
T ss_conf 99999732317998414677673475377771100355411454599999999998287699999976401356866776
Q ss_pred --------------------------------------HH----------HHHHHHCCCC--------------CCHHHH
Q ss_conf --------------------------------------10----------0011100223--------------200678
Q gi|254780321|r 164 --------------------------------------DA----------LLVSAKTGEG--------------IPLLLE 181 (606)
Q Consensus 164 --------------------------------------~i----------i~vSAktG~G--------------V~~LLd 181 (606)
++ +..--|++.| -+.||+
T Consensus 257 ~~~s~t~~~gn~~~r~F~~~iLdPIykvfdaimN~kkeei~~llekl~v~lk~~~kd~eGK~LlK~vMr~wLPAadalle 336 (842)
T KOG0469 257 WSKSATDAEGNPLRRAFCMFILDPIYKVFDAIMNFKKEEIATLLEKLEVTLKGDEKDLEGKALLKVVMRKWLPAADALLE 336 (842)
T ss_pred CCCCCCCCCCCCCCCCEEEEEECHHHHHHHHHHHCCHHHHHHHHHHHCCEECCCCCCCCCHHHHHHHHHHHCCHHHHHHH
T ss_conf 43323454468555641577603689999998601288899999974133125203665438999999974562888999
Q ss_pred HHHHHHHCCCCH-----------------------HHHHCCCCCCCCCEEECCCCCE-EEEEEECCCCCCCCCEEEEECC
Q ss_conf 776321000111-----------------------1220123310121011475725-9999816987355845887335
Q gi|254780321|r 182 RIVQQLPSPTSP-----------------------EGANAPLKALLIDSWYNSYLGV-MVLVRIINGQLTKGQSIRLMGT 237 (606)
Q Consensus 182 ~Iv~~iP~P~~~-----------------------~~~~~Pl~alVfds~~D~~~G~-I~~~RV~sG~lk~Gd~I~~~~~ 237 (606)
.|.-++|+|... -++++|+.++|.+..-.+-+|+ ++++|||||++..|+++++...
T Consensus 337 mIalhLPSPvtaQkyR~e~LYEGP~DDe~a~aik~CD~~aplmmYvSKMvPtsDkgRFyAFGRVFsG~v~~G~KvRiqgP 416 (842)
T KOG0469 337 MIALHLPSPVTAQKYRAEYLYEGPADDEAAVAIKNCDPKAPLMMYVSKMVPTSDKGRFYAFGRVFSGKVFTGLKVRIQGP 416 (842)
T ss_pred HHHHHCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCEEEEEEECCCCCCCCEEEEEEEEECCEECCCCEEEEECC
T ss_conf 99852899057888889876118873577667652699987277564016557874279973344230136857887589
Q ss_pred C----CCCC-----CCCCCCCCCC-EEEEHHCCCCCHHHHHHCCCCCCCCCC-CCEECCCCCCCCCCCCCCCCCCCEEEE
Q ss_conf 5----6421-----0122233554-124010124712332201100244445-420004667853236455222212664
Q gi|254780321|r 238 N----AKYQ-----VERIGILTPK-MIDIEALYPGEIGVMIASIKEVSHTRV-GDTITDDSSPTTSALPGFKPIQPVVFC 306 (606)
Q Consensus 238 g----~~~~-----v~~ig~~~~~-~~~v~~l~aGdVG~ii~gik~l~~~~v-GDTl~~~~~p~~~~Lp~~~~~~P~v~~ 306 (606)
+ ++.. +.+.-.|.+. -.+++..-||. |+|+-++++.-+ +-|||..+.......-.|. ..|+|-.
T Consensus 417 nY~PGkkedl~~K~iqRtvlMMGr~vepied~PaGN----IiGlvGvDqfLvKtGTiTt~e~AHNmrvMKFS-VSPVV~V 491 (842)
T KOG0469 417 NYVPGKKEDLYIKAIQRTVLMMGRFVEPIEDCPAGN----IIGLVGVDQFLVKTGTITTSEAAHNMRVMKFS-VSPVVRV 491 (842)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC----EEEEEEHHHHHHCCCCEEEHHHHCCCEEEEEE-CCCEEEE
T ss_conf 989970888889899999998626555456698875----77785166764304723205541231478862-2641899
Q ss_pred EECCCCHHHHHHHHHHHHHHHHHCCCCCCCC-CCCCCCCCEEEEEECCHHHHHHHHHHHHHHC-CCEEEEECCCCCEEEE
Q ss_conf 2126770245788999988864112211125-6760004202899637678988898886644-9506973782330335
Q gi|254780321|r 307 GLFPVDATQFENLRTAINKLRLNDASFSFEL-ENSTALGFGFRCGFLGLLHLEIIQERLEREF-SLNLIGTSPSVVYELY 384 (606)
Q Consensus 307 ~i~p~~~~d~~~L~~aL~kL~~~D~sl~~e~-Ets~aLg~Gfr~gglG~LHLeVi~eRL~rEf-g~ev~~t~P~V~Ykv~ 384 (606)
+++++|..|..||.++|.||+..||....+. |+.+.. +.|-|+|||||.+.-|+..| ++.+..+.|-|.||.+
T Consensus 492 AVe~Knp~DLpKLvEGLkrLakSDP~v~~~~~esGehi-----iAgaGeLHLEICLkDLeedhA~iPlk~sdPvVsYrEt 566 (842)
T KOG0469 492 AVEAKNPADLPKLVEGLKRLAKSDPMVQCIIEESGEHI-----IAGAGELHLEICLKDLEEDHACIPLKKSDPVVSYRET 566 (842)
T ss_pred EEECCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCCEE-----EECCCHHHHHHHHHHHHHCCCCCCEECCCCEEEEECC
T ss_conf 98327834648899999877426984999962688547-----8515502179887667650047740058980563200
Q ss_pred EECCCEE--------------------------ECC----CHH-HC-------------------------CCH------
Q ss_conf 3156454--------------------------126----966-62-------------------------586------
Q gi|254780321|r 385 MHDGSMQ--------------------------KLS----NPI-DM-------------------------PEV------ 402 (606)
Q Consensus 385 ~~dG~~~--------------------------~Vd----~p~-~~-------------------------p~~------ 402 (606)
...-+-. .++ ||- +| |+.
T Consensus 567 vs~~ss~~~lsKSpNKHNRi~mtaeP~~~~l~~~i~~g~v~~rd~fK~rAr~~aeky~~dvt~aRKIWCfgPd~tg~Nll 646 (842)
T KOG0469 567 VSEESSQTCLSKSPNKHNRIYMTAEPMDDGLSDDIENGKVNARDEFKARARILAEKYGWDVTEARKIWCFGPDGTGPNLL 646 (842)
T ss_pred CCCCCCHHHHCCCCCCCCEEEEECCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHHHEEEEECCCCCCCCEE
T ss_conf 25510024531598624636885035872144565348658167899999988987287515332346767899997378
Q ss_pred ----------HHHH--------------------------------------------------------------HHHC
Q ss_conf ----------7788--------------------------------------------------------------8623
Q gi|254780321|r 403 ----------TKIA--------------------------------------------------------------ELRE 410 (606)
Q Consensus 403 ----------~~i~--------------------------------------------------------------~i~E 410 (606)
+.|. .+.|
T Consensus 647 ~D~TK~vqylnEIKdsVvagFqwA~keG~l~~E~mRgvrfni~DvtLHADAIHRGggQiipt~rr~~ya~~l~A~P~l~E 726 (842)
T KOG0469 647 VDQTKGVQYLNEIKDSVVAGFQWATKEGPLFGENMRGVRFNILDVTLHADAIHRGGGQIIPTARRVLYASVLTAGPILQE 726 (842)
T ss_pred EECCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEEEEEEHHHHHCCCCEECHHHHHHHHHHHHHCCCEECC
T ss_conf 85212668999888989888777750687410010230577666566644565278703627899999988715862117
Q ss_pred CEEEEEEEECCCCCHHHHHHHHHHHHEEECCCCCC--CEEEEEEEECHHHHHHHHHHHHHHHCCCEEEEEEEECCCEECC
Q ss_conf 26999998083100038999886300142443368--3699999960433322046876763574188898543546436
Q gi|254780321|r 411 PWIQVTIITPNEYLGSILKLCQERRGIQIDMSHLD--NRAMIVYELPLNEVIFDFYDRLKSVSKGYASFDYNVIDYRDSD 488 (606)
Q Consensus 411 Pi~~~~I~~P~ey~G~Vm~~l~~RRG~~~~m~~~~--~~~~i~~~vPl~Eli~~f~~~LkS~T~G~as~~ye~~~Y~~~d 488 (606)
|+..++|.||+.|+|.|-+-+++|||...+-++.- ...++++-+|..|- |+|..+|||.|.|.|--.+.|+||..
T Consensus 727 PvylvEIq~pe~avGgiy~vLn~kRG~v~~e~q~~Gtp~f~vkayLPVnES-FgFt~dLrs~t~GqAfpq~vFdHws~-- 803 (842)
T KOG0469 727 PVYLVEIQCPEQAVGGIYGVLNRKRGHVFEEEQVPGTPMFVVKAYLPVNES-FGFTADLRSNTGGQAFPQMVFDHWSI-- 803 (842)
T ss_pred CEEEEEEECCHHHHCHHHHEEECCCCCEECCCCCCCCCCEEEEEEEECCCC-CCCCHHHHCCCCCCCCCCEEEECCCC--
T ss_conf 468999867145302112010015542001121689862689998522434-46646553166776554024310333--
Q ss_pred EEEEEEEECCCCCCEEEEE
Q ss_conf 6797488628824356874
Q gi|254780321|r 489 LVKLTILVNNETIDALSIL 507 (606)
Q Consensus 489 lvk~~ilin~~~vdals~i 507 (606)
+.|+|-|+-|..
T Consensus 804 -------lpgdp~dp~sk~ 815 (842)
T KOG0469 804 -------LPGDPLDPTSKP 815 (842)
T ss_pred -------CCCCCCCCCCCC
T ss_conf -------799988987661
No 21
>TIGR00503 prfC peptide chain release factor 3; InterPro: IPR004548 Peptide chain release factor 3 increases the formation of ribosomal termination complexes and stimulates activity of RF-1 and RF-2. It binds to guanine nucleotides and has a strong preference for UGA stop codons. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis sp. (strain PCC 6803), and in Staphylococcus aureus.; GO: 0005525 GTP binding, 0016149 translation release factor activity codon specific, 0006415 translational termination, 0005737 cytoplasm.
Probab=100.00 E-value=0 Score=462.25 Aligned_cols=361 Identities=24% Similarity=0.421 Sum_probs=309.5
Q ss_pred CCCHHHCEEEEEECCCCCCHHHHHHHHHHHC------CCCCCCCC-CCEEECCCHHHHHHCCEEEEEEEEEEEECCCCCE
Q ss_conf 9985253179998013898778899999982------98054444-3113058677987195052327999974378843
Q gi|254780321|r 5 PTPLSRIRNFSIVAHIDHGKSTLADRFIQHC------RGLTEREM-SSQVLDNMDIERERGITIKAQTVRLNYTSTDAKD 77 (606)
Q Consensus 5 ~~p~~~IRN~~IiaHvDhGKTTL~d~lL~~t------g~i~~~~~-~~~vlD~~~~EreRGITIka~~~~~~~~~~~~~~ 77 (606)
=.++++-||||||.|-|+|||||+|.+|..- |++..|.+ ...-.|||+.|++|||+|.+...++.| ++
T Consensus 5 L~EV~~RR~FAIISHPDAGKTT~TEK~LLyG~AIQ~AG~VK~r~S~~~A~SDWM~ME~QRGISIT~~VlQF~Y-----~~ 79 (530)
T TIGR00503 5 LKEVDKRRTFAIISHPDAGKTTLTEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVLQFPY-----RD 79 (530)
T ss_pred HHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCCCEEEEEEEEECC-----CC
T ss_conf 5788502554366168887424678888742566522441220012212213788750588144412774145-----77
Q ss_pred EEEEEEECCCCCHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCHHHHHHHH
Q ss_conf 89999617873002799999997302689999868788655899999999709967998326788753211338887755
Q gi|254780321|r 78 YQLNLIDTPGHVDFTYEVSRSLSACEGSLLVVDATQGVEAQTLANVYQAIDNNHEIITVLNKADLPSADPDRVKKQIEET 157 (606)
Q Consensus 78 y~iNlIDTPGH~DF~~EV~r~l~a~dgaiLvVdA~~Gvq~QT~~~~~~A~~~~l~~I~viNKiD~~~A~~e~v~~ei~~~ 157 (606)
..+||+|||||.|||.+..|.|.|+|.||+||||..|++.||+.-+..+....+||+.||||+|||.-+|-+..+|||..
T Consensus 80 ~l~NLLDTPGH~DFSEDTYRTL~A~D~~~M~IDaAKG~E~~T~KL~EV~RLR~~PI~TF~NKLDR~~~~P~ELlDEvE~~ 159 (530)
T TIGR00503 80 CLVNLLDTPGHEDFSEDTYRTLTAVDNCLMVIDAAKGVETRTRKLMEVTRLRDLPILTFINKLDRDIRDPLELLDEVENE 159 (530)
T ss_pred CEEECCCCCCCCCCCCHHHHHHHHHHHHEEEHHCCCCHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCHHHHHHHHHHH
T ss_conf 45620368588876404679999851230011112561234244542010004744335232065435537888888877
Q ss_pred HHHHH---------------------------------------------------------------------------
Q ss_conf 53223---------------------------------------------------------------------------
Q gi|254780321|r 158 IGIST--------------------------------------------------------------------------- 162 (606)
Q Consensus 158 ~g~~~--------------------------------------------------------------------------- 162 (606)
+++.+
T Consensus 160 L~~~~~~~~~PIG~G~~F~GVY~~~~~~~yLy~r~G~~~~~~~~~~~~~L~~P~L~~~~G~D~~~~l~dELELv~~A~~E 239 (530)
T TIGR00503 160 LKINCAPITYPIGCGKLFKGVYHLLKDEIYLYQRSGTGGTIKAVRVVKGLNNPALDSAVGSDLAQQLRDELELVEGASNE 239 (530)
T ss_pred HCCCEEEEECCCCCCCCCHHHHHHHCCEEEEEECCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 06411343056578843113554301406676305888416677776326880156776578999998899999863024
Q ss_pred -----------HHHHHHHHHCCCCCCHHHHHHHHHHHCCCCHH-------HHHCCCCCCCCCEE--ECC-CCCEEEEEEE
Q ss_conf -----------21000111002232006787763210001111-------22012331012101--147-5725999981
Q gi|254780321|r 163 -----------EDALLVSAKTGEGIPLLLERIVQQLPSPTSPE-------GANAPLKALLIDSW--YNS-YLGVMVLVRI 221 (606)
Q Consensus 163 -----------~~ii~vSAktG~GV~~LLd~Iv~~iP~P~~~~-------~~~~Pl~alVfds~--~D~-~~G~I~~~RV 221 (606)
..++++||..+.||+.+||+++++.|.|.... .....|.++||+.. +|| ||.||++.||
T Consensus 240 Fd~~~~~~GE~TPVFFG~Al~NFGV~~~L~~l~~~A~~P~~~~~~~~TvE~~~e~FsGFVFK~QANMDPKHRDRvAFlRV 319 (530)
T TIGR00503 240 FDLAAFLGGELTPVFFGTALGNFGVDHFLDGLLQYAPKPEARQSDTRTVEPTEEKFSGFVFKLQANMDPKHRDRVAFLRV 319 (530)
T ss_pred HHHHHHHCCCCCCEECCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCEEEEEEE
T ss_conf 56899853864631110001010089999999986078887656775402343354422888633798863350577776
Q ss_pred CCCCCCCCCEEEEECCCCCCCCCCC-CCCCCCEEEEHHCCCCCHHHHHHCCCCCCCCCCCCEECCCCCCCCCCCCCCCCC
Q ss_conf 6987355845887335564210122-233554124010124712332201100244445420004667853236455222
Q gi|254780321|r 222 INGQLTKGQSIRLMGTNAKYQVERI-GILTPKMIDIEALYPGEIGVMIASIKEVSHTRVGDTITDDSSPTTSALPGFKPI 300 (606)
Q Consensus 222 ~sG~lk~Gd~I~~~~~g~~~~v~~i-g~~~~~~~~v~~l~aGdVG~ii~gik~l~~~~vGDTl~~~~~p~~~~Lp~~~~~ 300 (606)
+||+..+|++++-.+++|.-.+..- ..|..++..+++++||| |.|+.+...+.||||++..+.-.-.|+|.|.
T Consensus 320 ~SGKyEK~M~~k~~R~gK~V~~S~~~~~~A~~R~~v~~AYaGD----~iGL~N~G~~~IGDT~~~GE~~~f~gIP~F~-- 393 (530)
T TIGR00503 320 VSGKYEKGMKLKHVRTGKDVVLSDALTLMAGDREHVEEAYAGD----IIGLHNHGTIQIGDTFTQGEKLKFTGIPNFA-- 393 (530)
T ss_pred ECCEEECCCEECCCCCCCEEEECCHHHHHHCCHHHHHHCCCCC----EEEECCCCCEEECCCCCCCCEEEECCCCCCC--
T ss_conf 4134634756614213553686323565440212231127776----5310688426747720248656638778866--
Q ss_pred CCEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCCC-CCC-CCCCCEEEEEECCHHHHHHHHHHHHHHCCCEEEEECCC
Q ss_conf 2126642126770245788999988864112211125-676-00042028996376789888988866449506973782
Q gi|254780321|r 301 QPVVFCGLFPVDATQFENLRTAINKLRLNDASFSFEL-ENS-TALGFGFRCGFLGLLHLEIIQERLEREFSLNLIGTSPS 378 (606)
Q Consensus 301 ~P~v~~~i~p~~~~d~~~L~~aL~kL~~~D~sl~~e~-Ets-~aLg~Gfr~gglG~LHLeVi~eRL~rEfg~ev~~t~P~ 378 (606)
|-+|.-+-..|++.+.+|..+|..|++|-+--.+.+ ..| -.+ .++..|.||.||++.||+.|||+|.+.-+=.
T Consensus 394 -PELF~~~R~~DP~~~K~l~KG~~~L~EEGAVQv~~~l~~~krD~----I~~AVG~LQF~VV~~RL~~EY~VE~~~E~~~ 468 (530)
T TIGR00503 394 -PELFRRLRLKDPLKQKQLLKGLVQLSEEGAVQVLRPLDNNKRDL----IVGAVGVLQFDVVVYRLKEEYNVEAVYEPVN 468 (530)
T ss_pred -HHHHHHHHCCCCHHHHHHHCCCHHCCCCCHHHHHHHHHHCCCCE----EEEECCHHHHHHHHHHHHCCCCEEEEEECCC
T ss_conf -78999862138345566550410002264323231132147760----5542011468899887300134035651346
Q ss_pred CCE
Q ss_conf 330
Q gi|254780321|r 379 VVY 381 (606)
Q Consensus 379 V~Y 381 (606)
|..
T Consensus 469 ~~~ 471 (530)
T TIGR00503 469 VAL 471 (530)
T ss_pred CCH
T ss_conf 301
No 22
>KOG0467 consensus
Probab=100.00 E-value=0 Score=416.58 Aligned_cols=469 Identities=26% Similarity=0.380 Sum_probs=337.6
Q ss_pred CCCHHHCEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCC-CCEEECCCHHHHHHCCEEEEEEEEEEEECCCCCEEEEEEE
Q ss_conf 998525317999801389877889999998298054444-3113058677987195052327999974378843899996
Q gi|254780321|r 5 PTPLSRIRNFSIVAHIDHGKSTLADRFIQHCRGLTEREM-SSQVLDNMDIERERGITIKAQTVRLNYTSTDAKDYQLNLI 83 (606)
Q Consensus 5 ~~p~~~IRN~~IiaHvDhGKTTL~d~lL~~tg~i~~~~~-~~~vlD~~~~EreRGITIka~~~~~~~~~~~~~~y~iNlI 83 (606)
+.+.++||||||+||||||||||+|.|+...|.|+.|-+ +-++||+.+.|+-||||.||+.++... ++|.+|||
T Consensus 3 ~~~~~~irn~~~vahvdhgktsladsl~asngvis~rlagkirfld~redeq~rgitmkss~is~~~-----~~~~~nli 77 (887)
T KOG0467 3 QKGSEGIRNICLVAHVDHGKTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKSSAISLLH-----KDYLINLI 77 (887)
T ss_pred CCCCCCEEEEEEEEEECCCCCCHHHHHHHHCCEECHHHCCCEEECCCCCHHHHHCEEEECCCCCCCC-----CCEEEEEE
T ss_conf 7787750589999996488532577787506674153356066210462566616244313111013-----76589985
Q ss_pred ECCCCCHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCC----CCC-------CHHH
Q ss_conf 17873002799999997302689999868788655899999999709967998326788753----211-------3388
Q gi|254780321|r 84 DTPGHVDFTYEVSRSLSACEGSLLVVDATQGVEAQTLANVYQAIDNNHEIITVLNKADLPSA----DPD-------RVKK 152 (606)
Q Consensus 84 DTPGH~DF~~EV~r~l~a~dgaiLvVdA~~Gvq~QT~~~~~~A~~~~l~~I~viNKiD~~~A----~~e-------~v~~ 152 (606)
|+|||+||++||+.|.+-||||+++||+.+||-+||.++++.|...++++|.|||||||--. -|. ++.+
T Consensus 78 dspghvdf~sevssas~l~d~alvlvdvvegv~~qt~~vlrq~~~~~~~~~lvinkidrl~~el~lsp~ea~~~l~r~i~ 157 (887)
T KOG0467 78 DSPGHVDFSSEVSSASRLSDGALVLVDVVEGVCSQTYAVLRQAWIEGLKPILVINKIDRLITELKLSPQEAYEHLLRVIE 157 (887)
T ss_pred CCCCCCCHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEEHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_conf 58986450655326665047718999600254553899999999716745999731666788871696999999999999
Q ss_pred HHHHHHH----------------------HH--HHHHHHHH---------------------------------------
Q ss_conf 8775553----------------------22--32100011---------------------------------------
Q gi|254780321|r 153 QIEETIG----------------------IS--TEDALLVS--------------------------------------- 169 (606)
Q Consensus 153 ei~~~~g----------------------~~--~~~ii~vS--------------------------------------- 169 (606)
|+-..+| ++ ..+++++|
T Consensus 158 ~vn~~i~~~~~~~v~l~~~~~~i~d~~~~F~p~kgNVif~~A~~~~~f~~~~fak~~~~kl~~k~~al~k~lwgd~y~~~ 237 (887)
T KOG0467 158 QVNGVIGQFLGGIVELDDNWENIEDEEITFGPEDGNVIFASALDGWGFGIEQFAKFYAKKLGLKDAALLKFLWGDRYIDP 237 (887)
T ss_pred HHHHHHHHHHCCHHHCCCHHHHHHHCCEEECCCCCCEEEEEECCCCCCCHHHHHHHHHHHCCHHHHHHHHHHCCCEEECC
T ss_conf 86668887641111102103221010004367788489987101562019999999987447346652132104524332
Q ss_pred --------------------------------HHCCC------------CC-------CHHHHH---------------H
Q ss_conf --------------------------------10022------------32-------006787---------------7
Q gi|254780321|r 170 --------------------------------AKTGE------------GI-------PLLLER---------------I 183 (606)
Q Consensus 170 --------------------------------AktG~------------GV-------~~LLd~---------------I 183 (606)
|..+. |+ +.|+++ .
T Consensus 238 ktk~I~~~~~~~grkplf~~~vle~lw~iy~~~~~~~d~~~~~ki~k~l~i~~l~r~~~~ll~~im~~wLPls~avll~a 317 (887)
T KOG0467 238 KTKRICEGKKLKGRKPLFVQFVLENLWRIYELALKSRDKEKLEKIAKSLNIKLLPRDLRNLLDAIMSTWLPLSDAVLLTV 317 (887)
T ss_pred HHHHHHCCCCCCCCCCCCCEEEHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHH
T ss_conf 04666435676667776313330057899998743202888998764302121358999999999975263210229999
Q ss_pred HHHHHCCCCH--------------------------HHHHCCCCCCCCC-----EEECCCCCEEEEEEECCCCCCCCCEE
Q ss_conf 6321000111--------------------------1220123310121-----01147572599998169873558458
Q gi|254780321|r 184 VQQLPSPTSP--------------------------EGANAPLKALLID-----SWYNSYLGVMVLVRIINGQLTKGQSI 232 (606)
Q Consensus 184 v~~iP~P~~~--------------------------~~~~~Pl~alVfd-----s~~D~~~G~I~~~RV~sG~lk~Gd~I 232 (606)
+.++|.|... .+.++|.-.+|.+ ..++|-.--+++.||+||+++.||.+
T Consensus 318 ~~~lp~pl~~~~~r~~rl~~s~~~~~~~~~~~~v~~~~~~~pviv~Vskm~~~~~k~lp~~~l~~~ari~sgTlr~g~~v 397 (887)
T KOG0467 318 VYKLPDPIRSQAERGLRLLSSSDHRSDPPLTKAVKSCSKESPVLVFVSKMLATPLKYLPQSRLLAFARIFSGTLRVGQVV 397 (887)
T ss_pred HHHCCCHHHHHHHHHCEECCCCCCCCCHHHHHHHHCCCCCCCEEEEEEEEECCCHHHCCHHHHEEEEEECCCCEEECCEE
T ss_conf 88559779999875250126841113727665411379988479999722046232172302115635014844621176
Q ss_pred EEECC-------CCCCCCCCCCCCCCC-EEEEHHCCCCCHHHHHHCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCEE
Q ss_conf 87335-------564210122233554-1240101247123322011002444454200046678532364552222126
Q gi|254780321|r 233 RLMGT-------NAKYQVERIGILTPK-MIDIEALYPGEIGVMIASIKEVSHTRVGDTITDDSSPTTSALPGFKPIQPVV 304 (606)
Q Consensus 233 ~~~~~-------g~~~~v~~ig~~~~~-~~~v~~l~aGdVG~ii~gik~l~~~~vGDTl~~~~~p~~~~Lp~~~~~~P~v 304 (606)
+.... -.+.++.+++.|.++ ..+.++..+|.+ ++|.+.....-.-|||+.. |..--++.-....|.+
T Consensus 398 ~v~~pd~~~~e~i~~~~ie~lyl~mgqelv~~d~v~~gnv----~~I~g~~~vlks~TL~s~~-~~~p~~~~~f~~tp~v 472 (887)
T KOG0467 398 YVLGPDPLSPEHITECTVESLYLFMGQELVPLDEVPSGNV----VAIGGAGIVLKSATLCSKV-PCGPNLVVNFQITPIV 472 (887)
T ss_pred EECCCCCCCCCEEEEEEEHHHHHHHCCCCEEEECCCCCCE----EEECCCCEEECCCEECCCC-CCCCEEEEEEEEEEEE
T ss_conf 4237899985404565405567750455223102477867----9861664475154110368-8765045666402478
Q ss_pred EEEECCCCHHHHHHHHHHHHHHHHHCCCCCCC-CCCCCCCCCEEEEEECCHHHHHHHHHHHHHHCCCEEEEECCCCCEEE
Q ss_conf 64212677024578899998886411221112-56760004202899637678988898886644950697378233033
Q gi|254780321|r 305 FCGLFPVDATQFENLRTAINKLRLNDASFSFE-LENSTALGFGFRCGFLGLLHLEIIQERLEREFSLNLIGTSPSVVYEL 383 (606)
Q Consensus 305 ~~~i~p~~~~d~~~L~~aL~kL~~~D~sl~~e-~Ets~aLg~Gfr~gglG~LHLeVi~eRL~rEfg~ev~~t~P~V~Ykv 383 (606)
-++++|.+..+-++|.+.|.-|..-||++++- .++.+.. +.--|+.||+=..--|+.=-++++.++.|.|+|+.
T Consensus 473 rvaiep~~p~em~~L~~glkll~~adp~v~i~v~~~gEhv-----l~~aGevhlerc~kDL~efa~i~i~vSeP~vpfrE 547 (887)
T KOG0467 473 RVAIEPDDPDEMDKLVEGLKLLNQADPFVKIRVEENGEHV-----LVTAGEVHLERCLKDLKEFAKIEISVSEPLVPFRE 547 (887)
T ss_pred EEEEECCCHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCEE-----EEECCHHHHHHHHHHHHHHHCEEEEECCCCCCHHH
T ss_conf 9996318867768899887766056406678876254103-----44301777998998876553068872487631565
Q ss_pred EEECCCE---------------------------------------------------E--ECC-----------CH---
Q ss_conf 5315645---------------------------------------------------4--126-----------96---
Q gi|254780321|r 384 YMHDGSM---------------------------------------------------Q--KLS-----------NP--- 396 (606)
Q Consensus 384 ~~~dG~~---------------------------------------------------~--~Vd-----------~p--- 396 (606)
|..+++. + .++ ++
T Consensus 548 T~~e~s~l~~~~~I~~~~~~~~~~~~ki~~~~~pl~~~~v~~l~~~~~ti~~i~~~~~~~~~i~e~~k~~~~e~ls~~~s 627 (887)
T KOG0467 548 TIIEDSDLLANLSIGQETKCLPRGQLKIKLRVVPLSGAVVDLLDKNSSLISNILRGESRQVPIDESQKGSFEENLSLLIS 627 (887)
T ss_pred HCCCCCHHHHHHHCCCCCCCCCCCCEEEEEEECCCCCCEECCCCCCCHHCCCHHCCCCCCCCCCCCCCCCCCCCCCHHHH
T ss_conf 40453010023322732110301233677664046652221243321100110125444430111124530023237999
Q ss_pred ----HH-----------------C----------------CC---------HHHH-------------------------
Q ss_conf ----66-----------------2----------------58---------6778-------------------------
Q gi|254780321|r 397 ----ID-----------------M----------------PE---------VTKI------------------------- 405 (606)
Q Consensus 397 ----~~-----------------~----------------p~---------~~~i------------------------- 405 (606)
.. | +. ...+
T Consensus 628 ~~~~~~~ek~~e~~~~~~~~~~Afgp~r~g~nilf~~~~~~~~s~~~~t~~~~~l~~~ivsgfql~~~sGPlc~Ep~~g~ 707 (887)
T KOG0467 628 LERLYEFEKPREKLGSFKDQIIAFGPRRVGPNILFNKDSKLYRSVRRGTPFVARLSESIVSGFQLATSSGPLCNEPMQGI 707 (887)
T ss_pred HHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCEEECCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCE
T ss_conf 98876416627777788751001141335886013200031254540555787899987666756650686324674207
Q ss_pred --------------------------------------HHHHCCEEEEEEEECCCCCHHHHHHHHHHHHEEECCCC--CC
Q ss_conf --------------------------------------88623269999980831000389998863001424433--68
Q gi|254780321|r 406 --------------------------------------AELREPWIQVTIITPNEYLGSILKLCQERRGIQIDMSH--LD 445 (606)
Q Consensus 406 --------------------------------------~~i~EPi~~~~I~~P~ey~G~Vm~~l~~RRG~~~~m~~--~~ 445 (606)
..+..||+.++|.+-.|++|.+-.-+++|+|++..=+. ..
T Consensus 708 ~~~~es~~~e~~e~~~~~~GQviTa~Kescr~Afl~~~pRl~~aMYsC~I~t~~e~LGkvYAVlskR~gkVLsEem~EgT 787 (887)
T KOG0467 708 CFVLESGSAEEMESDGNIGGQLITAVKDSCRAAFLCWSPRIMAAMYSCDIQTASEVLGKVYAVLSKRHGKVLSEEMKEGT 787 (887)
T ss_pred EEEEECCCCCCCCCCCCCCCEEHHHHHHHHHHHHHCCCHHHHHHHEEEEEEEHHHHHHHHHHHHHHHCCHHHHHHHHCCC
T ss_conf 99964057532224577574108999999999986278777666564345323877556785442201321015663788
Q ss_pred CEEEEEEEECHHHHHHHHHHHHHHHCCCEEEEEEEECCCEECCE
Q ss_conf 36999999604333220468767635741888985435464366
Q gi|254780321|r 446 NRAMIVYELPLNEVIFDFYDRLKSVSKGYASFDYNVIDYRDSDL 489 (606)
Q Consensus 446 ~~~~i~~~vPl~Eli~~f~~~LkS~T~G~as~~ye~~~Y~~~dl 489 (606)
+.-.+++.+|-.|- |||.++++--|+|-|+--.-|+||+-.|.
T Consensus 788 ~~F~V~aliPVvES-FgFadeiRK~TSG~A~pQLvFShwEvId~ 830 (887)
T KOG0467 788 GFFIVTALIPVVES-FGFADEIRKGTSGAASPQLVFSHWEVIDE 830 (887)
T ss_pred CCEEEEEEEEEECC-CCHHHHHHHCCCCCCCHHHHCCCCEEECC
T ss_conf 75799997401215-55799986105655463300034178337
No 23
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=100.00 E-value=0 Score=419.52 Aligned_cols=179 Identities=70% Similarity=1.069 Sum_probs=176.7
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHCCEEEEEEEEEEEECCCCCEEEEEEEECCCCCHH
Q ss_conf 17999801389877889999998298054444311305867798719505232799997437884389999617873002
Q gi|254780321|r 12 RNFSIVAHIDHGKSTLADRFIQHCRGLTEREMSSQVLDNMDIERERGITIKAQTVRLNYTSTDAKDYQLNLIDTPGHVDF 91 (606)
Q Consensus 12 RN~~IiaHvDhGKTTL~d~lL~~tg~i~~~~~~~~vlD~~~~EreRGITIka~~~~~~~~~~~~~~y~iNlIDTPGH~DF 91 (606)
|||||+||+|||||||+|+||+.+|.+++++..++++|++++|+||||||+++.+++.|...+|+.|.+||||||||.||
T Consensus 1 RNiaiiGHvd~GKTTL~~~ll~~tg~i~~~~~~~~~~D~~~~E~eRgiTi~~~~~~~~~~~~~~~~~~in~iDtPGh~dF 80 (179)
T cd01890 1 RNFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDF 80 (179)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEECCCCHHHHHCCCEEEEEEEEEEEECCCCCCEEEEEEECCCCCCC
T ss_conf 95999948998989999999998599541457324416517678638668743368884136787148999989986451
Q ss_pred HHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 79999999730268999986878865589999999970996799832678875321133888775553223210001110
Q gi|254780321|r 92 TYEVSRSLSACEGSLLVVDATQGVEAQTLANVYQAIDNNHEIITVLNKADLPSADPDRVKKQIEETIGISTEDALLVSAK 171 (606)
Q Consensus 92 ~~EV~r~l~a~dgaiLvVdA~~Gvq~QT~~~~~~A~~~~l~~I~viNKiD~~~A~~e~v~~ei~~~~g~~~~~ii~vSAk 171 (606)
.+|+.|++++||+|||||||.+|+|+||+++|.+|.+.++|+|+||||||+++||++++.+|+++.+|+++.+++++||+
T Consensus 81 ~~~~~~al~~~D~allVVda~~Gv~~qT~~~~~~a~~~~~p~ivviNKiD~~~ad~~~v~~~i~~~~g~~~~~~v~vSA~ 160 (179)
T cd01890 81 SYEVSRSLAACEGALLLVDATQGVEAQTLANFYLALENNLEIIPVINKIDLPSADPERVKQQIEDVLGLDPSEAILVSAK 160 (179)
T ss_pred HHHHHHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCEEEEECC
T ss_conf 77898899754427899864778737489999999876998899986555677899999999999868897674884378
Q ss_pred CCCCCCHHHHHHHHHHHCC
Q ss_conf 0223200678776321000
Q gi|254780321|r 172 TGEGIPLLLERIVQQLPSP 190 (606)
Q Consensus 172 tG~GV~~LLd~Iv~~iP~P 190 (606)
+|.||++|||+|++++|+|
T Consensus 161 ~g~gv~~Ll~~i~~~ip~p 179 (179)
T cd01890 161 TGLGVEDLLEAIVERIPPP 179 (179)
T ss_pred CCCCHHHHHHHHHHHCCCC
T ss_conf 8979899999999648898
No 24
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=100.00 E-value=0 Score=399.64 Aligned_cols=176 Identities=42% Similarity=0.698 Sum_probs=161.7
Q ss_pred HCEEEEEECCCCCCHHHHHHHHHHHCCCCCCCC-CCCEEECCCHHHHHHCCEEEEEEEEEEEECCCCCEEEEEEEECCCC
Q ss_conf 531799980138987788999999829805444-4311305867798719505232799997437884389999617873
Q gi|254780321|r 10 RIRNFSIVAHIDHGKSTLADRFIQHCRGLTERE-MSSQVLDNMDIERERGITIKAQTVRLNYTSTDAKDYQLNLIDTPGH 88 (606)
Q Consensus 10 ~IRN~~IiaHvDhGKTTL~d~lL~~tg~i~~~~-~~~~vlD~~~~EreRGITIka~~~~~~~~~~~~~~y~iNlIDTPGH 88 (606)
|||||||+||+|||||||+|+||+.+|.+.+++ ..+++||++++||||||||+++.+++.| +++++||||||||
T Consensus 1 nIRNv~iiGHvd~GKTTL~~~Ll~~tg~~~~~~~~~~~~~D~~~~E~ergiTI~~~~~~~~~-----~~~~~n~IDtPGH 75 (194)
T cd01891 1 DIRNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTY-----KDTKINIVDTPGH 75 (194)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEEECCCHHHHHCCCCEEEEEEEEEE-----CCEEEEEEECCCC
T ss_conf 98789999068987999999999974876304652168614758888728763345899998-----9988999989984
Q ss_pred CHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCHHHHHHHHH---HHHHH--
Q ss_conf 0027999999973026899998687886558999999997099679983267887532113388877555---32232--
Q gi|254780321|r 89 VDFTYEVSRSLSACEGSLLVVDATQGVEAQTLANVYQAIDNNHEIITVLNKADLPSADPDRVKKQIEETI---GISTE-- 163 (606)
Q Consensus 89 ~DF~~EV~r~l~a~dgaiLvVdA~~Gvq~QT~~~~~~A~~~~l~~I~viNKiD~~~A~~e~v~~ei~~~~---g~~~~-- 163 (606)
.||.+|+.+++++||+|||||||.+|||+||+++|.+|.+.++++|+||||||+++|+++++.+|+.+++ +...+
T Consensus 76 ~dF~~~~~~~~~~~D~ailVVdA~~Gv~~QT~~~l~~a~~~~~~~iv~iNK~D~~~a~~~~v~~ei~~~~~~~~~~~~~~ 155 (194)
T cd01891 76 ADFGGEVERVLSMVDGVLLLVDASEGPMPQTRFVLKKALELGLKPIVVINKIDRPDARPEEVVDEVFDLFIELGATEEQL 155 (194)
T ss_pred HHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 77777898776434467898653789758999999999872997499885645898889999999999998639993335
Q ss_pred --HHHHHHHHCC----------CCCCHHHHHHHHHHHCC
Q ss_conf --1000111002----------23200678776321000
Q gi|254780321|r 164 --DALLVSAKTG----------EGIPLLLERIVQQLPSP 190 (606)
Q Consensus 164 --~ii~vSAktG----------~GV~~LLd~Iv~~iP~P 190 (606)
.++++||++| .+|++|||+|++++|+|
T Consensus 156 ~~pii~~SA~~G~~~d~~~~~~~~~~~ll~ai~~~iP~P 194 (194)
T cd01891 156 DFPVLYASAKNGWASLNLEDPSEDLEPLFDTIIEHVPAP 194 (194)
T ss_pred CCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHCCCC
T ss_conf 885787256553357788656465999999999658898
No 25
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=100.00 E-value=0 Score=386.41 Aligned_cols=179 Identities=39% Similarity=0.652 Sum_probs=154.5
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHCCCCCCCCC-CCEEECCCHHHHHHCCEEEEEEEEEEEE-----CCCCCEEEEEEEEC
Q ss_conf 17999801389877889999998298054444-3113058677987195052327999974-----37884389999617
Q gi|254780321|r 12 RNFSIVAHIDHGKSTLADRFIQHCRGLTEREM-SSQVLDNMDIERERGITIKAQTVRLNYT-----STDAKDYQLNLIDT 85 (606)
Q Consensus 12 RN~~IiaHvDhGKTTL~d~lL~~tg~i~~~~~-~~~vlD~~~~EreRGITIka~~~~~~~~-----~~~~~~y~iNlIDT 85 (606)
||||||||+|||||||+|+||+.+|.++++.. ..++||++++||||||||||+++++.|. ..+|++|.||||||
T Consensus 1 RNi~iigHvdhGKTTL~D~Ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTIks~~isl~~~~~~~~~~~~~~~~inlIDT 80 (222)
T cd01885 1 RNICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDS 80 (222)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHCCCCCHHCCCCEEECCCHHHHHHCCCEEEEEEEEEEEEECCCCCCCCCCEEEEEEEC
T ss_conf 96999866887799999999998598412106634651424334205415862268999860344345688638999728
Q ss_pred CCCCHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCC----CCCCCCHH-------HHH
Q ss_conf 8730027999999973026899998687886558999999997099679983267887----53211338-------887
Q gi|254780321|r 86 PGHVDFTYEVSRSLSACEGSLLVVDATQGVEAQTLANVYQAIDNNHEIITVLNKADLP----SADPDRVK-------KQI 154 (606)
Q Consensus 86 PGH~DF~~EV~r~l~a~dgaiLvVdA~~Gvq~QT~~~~~~A~~~~l~~I~viNKiD~~----~A~~e~v~-------~ei 154 (606)
|||+||++||+|+|++||||||||||.+|||+||+++|++|++.++|+|+|||||||. ..+|+++. +++
T Consensus 81 PGH~dF~~ev~~al~~~DgailVVDa~eGv~~qT~~vl~~a~~~~l~~il~iNKiDRli~el~l~p~day~~l~~iie~v 160 (222)
T cd01885 81 PGHVDFSSEVTAALRLCDGALVVVDAVEGVCVQTETVLRQALKERVKPVLVINKIDRLILELKLSPEEAYQRLARIIEQV 160 (222)
T ss_pred CCHHHHHHHHHHHHHHCCEEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCHHCCCCHHHHHHHHHHHHHHH
T ss_conf 85698999999999856817996104578577899999999985999799998903650011799899999999999999
Q ss_pred HHHHH----------------HHH--HHHHHHHHHCCCCC--------CHHHHHHHHHHHCC
Q ss_conf 75553----------------223--21000111002232--------00678776321000
Q gi|254780321|r 155 EETIG----------------IST--EDALLVSAKTGEGI--------PLLLERIVQQLPSP 190 (606)
Q Consensus 155 ~~~~g----------------~~~--~~ii~vSAktG~GV--------~~LLd~Iv~~iP~P 190 (606)
-.++. +++ .+++++||+.|.+. .+|||+|++++|+|
T Consensus 161 N~~i~~~~~~~~~~~~~~~~~~~p~~gnV~f~Sa~~Gw~f~l~~fa~ly~ll~~iv~~iP~P 222 (222)
T cd01885 161 NAIIGTYADEEFKEKDDEKWYFSPQKGNVAFGSALHGWGFTIIKFARIYAVLEMVVKHLPSP 222 (222)
T ss_pred HHHHHHHCHHHHCCCCCCCEEECCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCCC
T ss_conf 99998723043303553210207777838999832377126754121899999999628998
No 26
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=100.00 E-value=0 Score=385.33 Aligned_cols=142 Identities=32% Similarity=0.404 Sum_probs=134.2
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCC---CCCEEECCCHHHHHHCCEEEEEEEEEEEECCCCCEEEEEEEECCCCC
Q ss_conf 799980138987788999999829805444---43113058677987195052327999974378843899996178730
Q gi|254780321|r 13 NFSIVAHIDHGKSTLADRFIQHCRGLTERE---MSSQVLDNMDIERERGITIKAQTVRLNYTSTDAKDYQLNLIDTPGHV 89 (606)
Q Consensus 13 N~~IiaHvDhGKTTL~d~lL~~tg~i~~~~---~~~~vlD~~~~EreRGITIka~~~~~~~~~~~~~~y~iNlIDTPGH~ 89 (606)
||+|+||+|+|||||+|+|||.+|.+.+.+ .+++++|++++||||||||.++.+++.| ++++|||||||||+
T Consensus 1 Ni~iigH~~aGKTtL~E~lL~~~g~i~~~G~V~~g~t~~D~~~~E~~RgiSi~s~~~~~~w-----~~~~inliDTPG~~ 75 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEW-----KGHKINLIDTPGYA 75 (268)
T ss_pred CEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHCCCCEECCEEEEEE-----CCEEEEEEECCCCH
T ss_conf 9899908999989999999996699665765458973577878898679675135578888-----99799998698975
Q ss_pred HHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 0279999999730268999986878865589999999970996799832678875321133888775553
Q gi|254780321|r 90 DFTYEVSRSLSACEGSLLVVDATQGVEAQTLANVYQAIDNNHEIITVLNKADLPSADPDRVKKQIEETIG 159 (606)
Q Consensus 90 DF~~EV~r~l~a~dgaiLvVdA~~Gvq~QT~~~~~~A~~~~l~~I~viNKiD~~~A~~e~v~~ei~~~~g 159 (606)
||++||+|+|+++|+||+||||.+|||+||+..|+.|.++++|+|+||||||+++||++++.++|++.++
T Consensus 76 DF~~e~~~aL~v~D~Av~Vida~~GVe~~T~~~w~~~~~~~iP~i~fINKmDr~~ad~~~~l~~i~~~lg 145 (268)
T cd04170 76 DFVGETRAALRAADAALVVVSAQSGVEVGTEKLWEFADEAGIPRIIFINKMDRERADFDKTLAALQEAFG 145 (268)
T ss_pred HHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHHC
T ss_conf 7999999984047839999418754768799999999985999899997878789964779999999868
No 27
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=100.00 E-value=0 Score=384.90 Aligned_cols=176 Identities=35% Similarity=0.578 Sum_probs=158.6
Q ss_pred HCEEEEEECCCCCCHHHHHHHHHHHCCCCCCC-------CCCCEEECCCHHHHHHCCEEEEEEEEEEEECCCCCEEEEEE
Q ss_conf 53179998013898778899999982980544-------44311305867798719505232799997437884389999
Q gi|254780321|r 10 RIRNFSIVAHIDHGKSTLADRFIQHCRGLTER-------EMSSQVLDNMDIERERGITIKAQTVRLNYTSTDAKDYQLNL 82 (606)
Q Consensus 10 ~IRN~~IiaHvDhGKTTL~d~lL~~tg~i~~~-------~~~~~vlD~~~~EreRGITIka~~~~~~~~~~~~~~y~iNl 82 (606)
++|||||+||+|+|||||+|+|||.+|.+.+. +.+++++|++++|++|||||.++.+++.| ++++|||
T Consensus 1 ~~Rniai~gH~gaGKTtL~EalL~~~G~i~r~G~V~~~~~~g~t~~D~~~eE~~R~iSi~~~~~~~~w-----~~~kinl 75 (267)
T cd04169 1 RRRTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEY-----RDCVINL 75 (267)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCHHHHHHCCCEEECCEEEEEE-----CCEEEEE
T ss_conf 90179998479999899999999866863338546303688860468879998659448636378878-----9989999
Q ss_pred EECCCCCHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 61787300279999999730268999986878865589999999970996799832678875321133888775553223
Q gi|254780321|r 83 IDTPGHVDFTYEVSRSLSACEGSLLVVDATQGVEAQTLANVYQAIDNNHEIITVLNKADLPSADPDRVKKQIEETIGIST 162 (606)
Q Consensus 83 IDTPGH~DF~~EV~r~l~a~dgaiLvVdA~~Gvq~QT~~~~~~A~~~~l~~I~viNKiD~~~A~~e~v~~ei~~~~g~~~ 162 (606)
||||||.||.+|+.++|++||+||+||||.+|||+||+..|..|.++++|.++||||||+++||++++.++|++.|+...
T Consensus 76 iDTPG~~DF~~e~~~al~v~D~AviVv~a~~GVe~~T~~~w~~a~~~~iP~iifINKmDr~~adf~~~l~~i~~~lg~~~ 155 (267)
T cd04169 76 LDTPGHEDFSEDTYRTLTAVDSAVMVIDAAKGVEPQTRKLFEVCRLRGIPIITFINKLDREGRDPLELLDEIEEELGIDC 155 (267)
T ss_pred EECCCCHHHHHHHHHHHHHHHCEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCC
T ss_conf 97969778999999999886454799525666535589999999972999799985345678987899999999868775
Q ss_pred ----------------------------------------------------------------------------H---
Q ss_conf ----------------------------------------------------------------------------2---
Q gi|254780321|r 163 ----------------------------------------------------------------------------E--- 163 (606)
Q Consensus 163 ----------------------------------------------------------------------------~--- 163 (606)
+
T Consensus 156 vpi~lPig~~~~f~GvVDl~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~e~~~e~~el~~e~~~~~~~e~i~ 235 (267)
T cd04169 156 TPLTWPIGMGKDFKGVYDRRTGEVELYDRGAGGATIAPEETKGLDDPKLDELGGDLAEQLREELELLEGAGPEFDQEAFL 235 (267)
T ss_pred CEEEEEECCCCCEEEEEECCCCEEEEECCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
T ss_conf 11687751699447999867798998007889954542578867779999975999999973356775365505199998
Q ss_pred -----HHHHHHHHCCCCCCHHHHHHHHHHHCC
Q ss_conf -----100011100223200678776321000
Q gi|254780321|r 164 -----DALLVSAKTGEGIPLLLERIVQQLPSP 190 (606)
Q Consensus 164 -----~ii~vSAktG~GV~~LLd~Iv~~iP~P 190 (606)
.++++||.++.||+.|||+|++++|+|
T Consensus 236 ~g~i~PV~~GSA~~~~GV~~LLd~I~~~lPsP 267 (267)
T cd04169 236 AGELTPVFFGSALNNFGVQELLDALVDLAPAP 267 (267)
T ss_pred HCCEEEEEEEECCCCCCHHHHHHHHHHHCCCC
T ss_conf 29787899988898809999999999767899
No 28
>KOG0468 consensus
Probab=100.00 E-value=0 Score=369.82 Aligned_cols=467 Identities=25% Similarity=0.361 Sum_probs=342.1
Q ss_pred HHCEEEEEECCCCCCHHHHHHHHHHHCCCCCC--CCCCCEEECCCHHHHHHCCEEEEEEEEEEEECCCCCEEEEEEEECC
Q ss_conf 25317999801389877889999998298054--4443113058677987195052327999974378843899996178
Q gi|254780321|r 9 SRIRNFSIVAHIDHGKSTLADRFIQHCRGLTE--REMSSQVLDNMDIERERGITIKAQTVRLNYTSTDAKDYQLNLIDTP 86 (606)
Q Consensus 9 ~~IRN~~IiaHvDhGKTTL~d~lL~~tg~i~~--~~~~~~vlD~~~~EreRGITIka~~~~~~~~~~~~~~y~iNlIDTP 86 (606)
+.|||++++||-.||||+|.|.|.++|.---. .+..-+++|.+..|+|||+|||++.+++.....+++.|.+|++|||
T Consensus 126 ~~irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~nilDTP 205 (971)
T KOG0468 126 ERIRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNILDTP 205 (971)
T ss_pred CEEEEEEEEECCCCCHHHHHHHHCEECCCCCCCCCCCCCCCCCCCHHHHHCCCEEEECCEEEEEECCCCCEEEEEEECCC
T ss_conf 40799988611456715787763131346555542356313664245675485676132289985676724335552588
Q ss_pred CCCHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCC-------CCCCC----CCHHHHHH
Q ss_conf 73002799999997302689999868788655899999999709967998326788-------75321----13388877
Q gi|254780321|r 87 GHVDFTYEVSRSLSACEGSLLVVDATQGVEAQTLANVYQAIDNNHEIITVLNKADL-------PSADP----DRVKKQIE 155 (606)
Q Consensus 87 GH~DF~~EV~r~l~a~dgaiLvVdA~~Gvq~QT~~~~~~A~~~~l~~I~viNKiD~-------~~A~~----e~v~~ei~ 155 (606)
||+||+-|+.++|++.|||+|||||.+|||-+|...+..|.+..+++.+||||||| |-.|. ..+.++|-
T Consensus 206 GHVnF~DE~ta~l~~sDgvVlvvDv~EGVmlntEr~ikhaiq~~~~i~vviNKiDRLilELkLPP~DAY~KLrHii~~iN 285 (971)
T KOG0468 206 GHVNFSDETTASLRLSDGVVLVVDVAEGVMLNTERIIKHAIQNRLPIVVVINKVDRLILELKLPPMDAYYKLRHIIDEIN 285 (971)
T ss_pred CCCCCHHHHHHHHHHCCEEEEEEECCCCCEEEHHHHHHHHHHCCCCEEEEEEHHHHHHHHHCCCHHHHHHHHHHHHHHHC
T ss_conf 75550688888865236379999822570520999999987426767999741678999816983889999878999862
Q ss_pred HHHH-HHHH----------HHHHHH-------------------------------------------------------
Q ss_conf 5553-2232----------100011-------------------------------------------------------
Q gi|254780321|r 156 ETIG-ISTE----------DALLVS------------------------------------------------------- 169 (606)
Q Consensus 156 ~~~g-~~~~----------~ii~vS------------------------------------------------------- 169 (606)
+++. +..+ ++.+.|
T Consensus 286 ~~is~~s~~~~~~~sP~~gNvcFaS~~~g~cFtl~sFak~Y~~~~~~~~~d~Fa~RLWGdvYf~~ktrkF~kk~~~~~~~ 365 (971)
T KOG0468 286 NLISTFSKDDNPVVSPILGNVCFASGKLGFCFTLKSFAKLYADAHGHIDVDDFAKRLWGDVYFHSKTRKFVKKPPDGSGS 365 (971)
T ss_pred CHHHHCCCCCCCCCCCCCCCEEEECCCCCEEEEHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 41221025666412644476344215544166657788888986088515441033310000046652001479887664
Q ss_pred ------------------------------HHC---------CCCCCHHH---------------HHHHHHHHCCCCH--
Q ss_conf ------------------------------100---------22320067---------------8776321000111--
Q gi|254780321|r 170 ------------------------------AKT---------GEGIPLLL---------------ERIVQQLPSPTSP-- 193 (606)
Q Consensus 170 ------------------------------Akt---------G~GV~~LL---------------d~Iv~~iP~P~~~-- 193 (606)
|.- -.++.+|| |++++++|+|...
T Consensus 366 rsFVeFILePlYKi~sq~igd~~~~l~~~l~e~~v~ls~e~~k~n~rPll~lvc~~ffg~~sgfvd~~v~hi~sP~e~a~ 445 (971)
T KOG0468 366 RSFVEFILEPLYKIFSQVIGDEKDSLKGLLAELGVRLSKEAYKLNPRPLLRLVCKSFFGIESGFVDMPVEHIPSPRENAA 445 (971)
T ss_pred CHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHHHHCCCHHHHHC
T ss_conf 02345567689999999851033201204666410246777623851799999998615303465755764688233111
Q ss_pred ---------------------HHHHCCCCCCCCCEEE-CCCCCEEEEEEECCCCCCCCCEEEEECCCC---------CCC
Q ss_conf ---------------------1220123310121011-475725999981698735584588733556---------421
Q gi|254780321|r 194 ---------------------EGANAPLKALLIDSWY-NSYLGVMVLVRIINGQLTKGQSIRLMGTNA---------KYQ 242 (606)
Q Consensus 194 ---------------------~~~~~Pl~alVfds~~-D~~~G~I~~~RV~sG~lk~Gd~I~~~~~g~---------~~~ 242 (606)
-++++||-..+.+.+- |.-.--.+++||+||+++.|+.|.....+- ..+
T Consensus 446 ~K~~hsy~G~~~~~i~~~m~~c~~~~pLm~h~tklyp~dD~~~f~~f~rv~Sg~~~~~q~V~vlgeny~leDEeD~~~~~ 525 (971)
T KOG0468 446 RKAEHSYTGTKDSLIYEGMVECNASGPLMVHVTKLYPRDDTVQFHVFGRVYSGQVVTGQDVRVLGENYSLEDEEDMVICE 525 (971)
T ss_pred CCCCEEECCCCCCHHHHHHHHHCCCCCEEEEEECCEECCCCEEEEEEEEEEECCEEECCEEEEEECCCCCCCCCCCEEEE
T ss_conf 21100302887525889998517777516874041204775035554245304066155235740136679855101334
Q ss_pred CCCCCCCCCC-EEEEHHCCCCCHHHHHHCCCCCCCCC-CCCEECCCCCCCC-CCCCCCC-CCCCEEEEEECCCCHHHHHH
Q ss_conf 0122233554-12401012471233220110024444-5420004667853-2364552-22212664212677024578
Q gi|254780321|r 243 VERIGILTPK-MIDIEALYPGEIGVMIASIKEVSHTR-VGDTITDDSSPTT-SALPGFK-PIQPVVFCGLFPVDATQFEN 318 (606)
Q Consensus 243 v~~ig~~~~~-~~~v~~l~aGdVG~ii~gik~l~~~~-vGDTl~~~~~p~~-~~Lp~~~-~~~P~v~~~i~p~~~~d~~~ 318 (606)
|.+++++... +.+++.+.||..- + |+++++.- ---||+..+.+.. .-.++++ .+.|++-.++.|.|+++..|
T Consensus 526 v~el~v~~arY~i~V~~~~~G~~V-L---I~Gidq~i~KtaTi~~~~~ked~yiFrpl~~~t~~VvKiaveP~nPsELPK 601 (971)
T KOG0468 526 VGELWVVRARYRIPVSRAPAGLWV-L---IEGVDQSIVKTATIKSLEYKEDVYIFRPLKFNTEPVVKVAVEPLNPSELPK 601 (971)
T ss_pred EEEEEEEEEEEEEEECCCCCCCEE-E---EECCCHHHHHHHHEECCCCCCCEEECCCHHCCCCCEEEEEECCCCHHHHHH
T ss_conf 100456655678884246887589-9---844656776554100136665304325432177642899834688466267
Q ss_pred HHHHHHHHHHHCCCCCCCC-CCCCCCCCEEEEEECCHHHHHHHHHHHHHHC-CCEEEEECCCCCEEEEEEC---------
Q ss_conf 8999988864112211125-6760004202899637678988898886644-9506973782330335315---------
Q gi|254780321|r 319 LRTAINKLRLNDASFSFEL-ENSTALGFGFRCGFLGLLHLEIIQERLEREF-SLNLIGTSPSVVYELYMHD--------- 387 (606)
Q Consensus 319 L~~aL~kL~~~D~sl~~e~-Ets~aLg~Gfr~gglG~LHLeVi~eRL~rEf-g~ev~~t~P~V~Ykv~~~d--------- 387 (606)
+-++|.|....=|.+.-.- |+.+.. +.|-|||-|+-+..-||.-| .+|+-++-|-|.|-++..+
T Consensus 602 mldgLrKinKsYPl~~tkVEESGEHv-----ilGtGElYmDcvlyDLR~~yseieikvaDPvv~F~Et~vetssikcfae 676 (971)
T KOG0468 602 MLDGLRKINKSYPLVITKVEESGEHV-----ILGTGELYMDCVLYDLRKSYSEIEIKVADPVVRFCETVVETSSIKCFAE 676 (971)
T ss_pred HHHHHHHHCCCCCCEEEEHHHCCCEE-----EECCCHHHHHHHHHHHHHHHHHHCEEECCCEEEEEEEEECCCCHHHHCC
T ss_conf 88998753112771787622267458-----8527611278899999987765033323852688876522541123204
Q ss_pred -------------------------CCEEECC-CHH-------------------HC-----------------------
Q ss_conf -------------------------6454126-966-------------------62-----------------------
Q gi|254780321|r 388 -------------------------GSMQKLS-NPI-------------------DM----------------------- 399 (606)
Q Consensus 388 -------------------------G~~~~Vd-~p~-------------------~~----------------------- 399 (606)
|. ..++ |+- -|
T Consensus 677 tpnkknkItmiaEPlek~l~eDiEng~-v~I~wn~krl~effqt~YdWDlLAaRsiWaFgpd~~GpNiL~dDTLp~evdk 755 (971)
T KOG0468 677 TPNKKNKITMIAEPLEKGLAEDIENGV-VVIDWNRKRLGEFFQTKYDWDLLAARSIWAFGPDYTGPNILLDDTLPTEVDK 755 (971)
T ss_pred CCCCCCCEEEEECHHHHHHHHHHHCCE-EEECCCHHHHHHHHHCCCCHHHHHHCCEECCCCCCCCCCEEECCCCCCHHHH
T ss_conf 888667425550100000567865380-7733666666566510366013420431223787789733205767201148
Q ss_pred -----------------------------------------------------CCHHH---------HHHHHCCEEEEEE
Q ss_conf -----------------------------------------------------58677---------8886232699999
Q gi|254780321|r 400 -----------------------------------------------------PEVTK---------IAELREPWIQVTI 417 (606)
Q Consensus 400 -----------------------------------------------------p~~~~---------i~~i~EPi~~~~I 417 (606)
|.+.+ ...++||+..++|
T Consensus 756 ~ll~~vkesivQGFqW~trEGPLc~EpIr~VkfKlld~~ia~e~l~rgggQiIPtaRrv~YsafL~AtPrLmEP~Y~VEi 835 (971)
T KOG0468 756 NLLSSVKESIVQGFQWGTREGPLCDEPIRNVKFKLLDAVIAPEPLHRGGGQIIPTARRVAYSAFLMATPRLMEPVYLVEI 835 (971)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCHHHCCCEEEEEE
T ss_conf 88888899999988887504876677322306898511047642014787001678888888787525353185589997
Q ss_pred EECCCCCHHHHHHHHHHHHEEECCCCCCC--EEEEEEEECHHHHHHHHHHHHHHHCCCEEEEEEEECCCEE
Q ss_conf 80831000389998863001424433683--6999999604333220468767635741888985435464
Q gi|254780321|r 418 ITPNEYLGSILKLCQERRGIQIDMSHLDN--RAMIVYELPLNEVIFDFYDRLKSVSKGYASFDYNVIDYRD 486 (606)
Q Consensus 418 ~~P~ey~G~Vm~~l~~RRG~~~~m~~~~~--~~~i~~~vPl~Eli~~f~~~LkS~T~G~as~~ye~~~Y~~ 486 (606)
.+|.+.+-.|-+.+++|||.+.......| .-.+.+-+|--|- +||-+.|+.-|+|.|---.-|.|||.
T Consensus 836 ~apad~v~~Vy~vl~rRRGhV~~d~p~pGSPly~v~a~iPvieS-fGFETDLR~hTqGqa~C~~vF~HW~~ 905 (971)
T KOG0468 836 TAPADCVPAVYTVLSRRRGHVTQDIPVPGSPLYTVKAYLPVIES-FGFETDLRVHTQGQAFCLSVFDHWRI 905 (971)
T ss_pred ECCCCHHHHHHHHHHHHCCCEEECCCCCCCCHHHEEEECCCCCC-CCCCCCEEEECCCHHHHHHHHHHCCC
T ss_conf 43642388999999862573233488899844550463013223-67520026630642578776563131
No 29
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=100.00 E-value=0 Score=378.99 Aligned_cols=179 Identities=35% Similarity=0.527 Sum_probs=156.0
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHCCCCCCCCC----CCEEECCCHHHHHHCCEEEEEEEEEEEECCCCCEEEEEEEECCC
Q ss_conf 17999801389877889999998298054444----31130586779871950523279999743788438999961787
Q gi|254780321|r 12 RNFSIVAHIDHGKSTLADRFIQHCRGLTEREM----SSQVLDNMDIERERGITIKAQTVRLNYTSTDAKDYQLNLIDTPG 87 (606)
Q Consensus 12 RN~~IiaHvDhGKTTL~d~lL~~tg~i~~~~~----~~~vlD~~~~EreRGITIka~~~~~~~~~~~~~~y~iNlIDTPG 87 (606)
||||||||+|||||||+|+||+.|+.+..+.. ..++||++++||||||||+++.+++.|...+|+.|.||||||||
T Consensus 1 RNvaiigHvdhGKTTL~d~Ll~~t~~~~~~~~~~~~~~~~~D~~~~E~eRgiTI~s~~~sl~~~~~~~k~~~inlIDTPG 80 (213)
T cd04167 1 RNVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPG 80 (213)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHCCCEECCEEEEEEECCCCCEEEEEEEECCC
T ss_conf 95999827898989999999997344555404442113575164665420355861459999825667505787788987
Q ss_pred CCHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCC-------CCCC----CCCHHHHHHH
Q ss_conf 3002799999997302689999868788655899999999709967998326788-------7532----1133888775
Q gi|254780321|r 88 HVDFTYEVSRSLSACEGSLLVVDATQGVEAQTLANVYQAIDNNHEIITVLNKADL-------PSAD----PDRVKKQIEE 156 (606)
Q Consensus 88 H~DF~~EV~r~l~a~dgaiLvVdA~~Gvq~QT~~~~~~A~~~~l~~I~viNKiD~-------~~A~----~e~v~~ei~~ 156 (606)
|+||++||+++|++||||+|||||.+|||+||+++|++|.+.++|+|+||||||| |.+| +.++.+|+..
T Consensus 81 H~dF~~ev~~al~~~DgailVVDa~eGv~~qT~~~l~~a~~~~l~~ilviNKiDRLi~el~l~p~day~~~~~ii~~vn~ 160 (213)
T cd04167 81 HVNFMDEVAAALRLSDGVVLVVDVVEGVTSNTERLIRHAILEGLPIVLVINKIDRLILELKLPPNDAYFKLRHIIDEVNN 160 (213)
T ss_pred CHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCHHHCCCCHHHHHHHHHHHHHHHHH
T ss_conf 24179999988863776799998788875779999999998699989999882343144069989999989999999999
Q ss_pred HHH-----------HHHHHHHHHHHHCCC--------CCCHHHHHHHHHHHCC
Q ss_conf 553-----------223210001110022--------3200678776321000
Q gi|254780321|r 157 TIG-----------ISTEDALLVSAKTGE--------GIPLLLERIVQQLPSP 190 (606)
Q Consensus 157 ~~g-----------~~~~~ii~vSAktG~--------GV~~LLd~Iv~~iP~P 190 (606)
++. -...+++++||+.|. .+.+|+|+|++++|+|
T Consensus 161 ~i~~~~~~~~~~~~p~~~nV~f~Sa~~gw~ftl~~fa~~y~l~d~i~~~ip~P 213 (213)
T cd04167 161 IIASFSTTLSFLFSPENGNVCFASSKFGFCFTLESFAKKYGLVDSIVSNIPSP 213 (213)
T ss_pred HHHHHCCCCCCEECCCCCCEEEEEECCCEEECCCCHHHHHHHHHHHHHHCCCC
T ss_conf 99970787351656887969999700052123623211689999999638898
No 30
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=100.00 E-value=0 Score=372.55 Aligned_cols=142 Identities=44% Similarity=0.572 Sum_probs=134.0
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCC---CCCEEECCCHHHHHHCCEEEEEEEEEEEECCCCCEEEEEEEECCCCC
Q ss_conf 799980138987788999999829805444---43113058677987195052327999974378843899996178730
Q gi|254780321|r 13 NFSIVAHIDHGKSTLADRFIQHCRGLTERE---MSSQVLDNMDIERERGITIKAQTVRLNYTSTDAKDYQLNLIDTPGHV 89 (606)
Q Consensus 13 N~~IiaHvDhGKTTL~d~lL~~tg~i~~~~---~~~~vlD~~~~EreRGITIka~~~~~~~~~~~~~~y~iNlIDTPGH~ 89 (606)
||+|+||+|+|||||+|+||+.+|.+.+.+ .+++++|++++|++|||||.++.+++.| ++++|||||||||.
T Consensus 1 Niai~gH~gaGKTtL~EalL~~ag~i~r~G~v~~g~tv~D~~~eE~~R~isi~~~~~~~~w-----~~~~inliDTPG~~ 75 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFW-----KDHRINIIDTPGHV 75 (270)
T ss_pred CEEEEECCCCCHHHHHHHHHHHCCCCCCCCEECCCCCCCCCCHHHHHCCCEEECCEEEEEE-----CCEEEEEEECCCCH
T ss_conf 9899968999988999999986687355815538975566848898768707336689998-----99899998696967
Q ss_pred HHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 0279999999730268999986878865589999999970996799832678875321133888775553
Q gi|254780321|r 90 DFTYEVSRSLSACEGSLLVVDATQGVEAQTLANVYQAIDNNHEIITVLNKADLPSADPDRVKKQIEETIG 159 (606)
Q Consensus 90 DF~~EV~r~l~a~dgaiLvVdA~~Gvq~QT~~~~~~A~~~~l~~I~viNKiD~~~A~~e~v~~ei~~~~g 159 (606)
||++|+.++|+|+|+||+||||.+|||+||+..|..|.++++|+|+||||||+++||++++.++|++.++
T Consensus 76 DF~~e~~~aL~~~D~AviVv~a~~GVe~~T~~~w~~~~~~~lP~i~fINKmDre~ad~~~~l~~i~~~lg 145 (270)
T cd01886 76 DFTIEVERSLRVLDGAVAVFDAVAGVEPQTETVWRQADRYNVPRIAFVNKMDRTGADFFRVVEQIREKLG 145 (270)
T ss_pred HHHHHHHHHHHHHCEEEEEEECCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHHC
T ss_conf 8899999998775559999846764426369999889984999899998878778871668999999858
No 31
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=100.00 E-value=0 Score=364.25 Aligned_cols=267 Identities=28% Similarity=0.476 Sum_probs=216.9
Q ss_pred CEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCC----------------CCEEECCCHHHHHHCCEEEEEEEEEEEECCC
Q ss_conf 317999801389877889999998298054444----------------3113058677987195052327999974378
Q gi|254780321|r 11 IRNFSIVAHIDHGKSTLADRFIQHCRGLTEREM----------------SSQVLDNMDIERERGITIKAQTVRLNYTSTD 74 (606)
Q Consensus 11 IRN~~IiaHvDhGKTTL~d~lL~~tg~i~~~~~----------------~~~vlD~~~~EreRGITIka~~~~~~~~~~~ 74 (606)
-=|++++||||||||||+.|||+.+|.++.+.. -..+||.+++||+||||| .+.|.+++
T Consensus 7 ~l~i~~~GhVD~GKSTL~G~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~a~~~D~~~eEr~rGiTi-----d~~~~~f~ 81 (426)
T PRK12317 7 HLNLAVIGHVDHGKSTLVGRLLYETGAVDEHIIEEYEEEAKKKGKESFKFAWVMDRLKEERERGVTI-----DLAHKKFE 81 (426)
T ss_pred EEEEEEEEECCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHCCCEE-----EEEEEEEE
T ss_conf 8499999522876888876898772994489999999899864877521432125786687558278-----83169995
Q ss_pred CCEEEEEEEECCCCCHHHHHHHHHHHHCCEEEEEEECCC--CCCHHHHHHHHHHHHCCCC-EEEEECCCCCCCCCC---C
Q ss_conf 843899996178730027999999973026899998687--8865589999999970996-799832678875321---1
Q gi|254780321|r 75 AKDYQLNLIDTPGHVDFTYEVSRSLSACEGSLLVVDATQ--GVEAQTLANVYQAIDNNHE-IITVLNKADLPSADP---D 148 (606)
Q Consensus 75 ~~~y~iNlIDTPGH~DF~~EV~r~l~a~dgaiLvVdA~~--Gvq~QT~~~~~~A~~~~l~-~I~viNKiD~~~A~~---e 148 (606)
++++.++|||+|||.||.-....+.+.+|.|+|||||.+ |+++||++|+.+|...|++ +|++|||||+.+.+. +
T Consensus 82 ~~~~~~~iiD~PGH~~fi~nmi~Gas~~D~ailvV~A~~~~G~~~QT~eHl~l~~~lgi~~iiV~vnKmD~v~~~~~~~~ 161 (426)
T PRK12317 82 TDKYYFTIIDCPGHRDFVKNMITGASQADAAVLVVSARDAGGVMPQTREHVFLARTLGINQLIVAINKMDAVNYDEKRYN 161 (426)
T ss_pred CCCCEEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCHHHHH
T ss_conf 49816999878963667877874534677279999636566764778999999998099839999953335677889999
Q ss_pred CHHHHHHHHH---HHHHHH--HHHHHHHCCCCCCH------------HHHHHHHHHHCCCCHHHHHCCCCCCCCCEEECC
Q ss_conf 3388877555---322321--00011100223200------------678776321000111122012331012101147
Q gi|254780321|r 149 RVKKQIEETI---GISTED--ALLVSAKTGEGIPL------------LLERIVQQLPSPTSPEGANAPLKALLIDSWYNS 211 (606)
Q Consensus 149 ~v~~ei~~~~---g~~~~~--ii~vSAktG~GV~~------------LLd~Iv~~iP~P~~~~~~~~Pl~alVfds~~D~ 211 (606)
++..++.+++ |+..++ ++|+||.+|.|+.. |++++ +.+++|. +..+.||++.|.+.+.-+
T Consensus 162 ~i~~~~~~~l~~~g~~~~~i~~iPiSa~~Gdni~~~s~~~~Wy~G~tLl~~L-~~~~~~~--~~~~~p~r~~I~~v~~~~ 238 (426)
T PRK12317 162 EVKEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVKKSDNTPWYNGPTLLEAL-DALKPPE--KPTDKPLRIPIQDVYSIT 238 (426)
T ss_pred HHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHH-HCCCCCC--CCCCCCEEEEEEEEEEEC
T ss_conf 9999999999970988034708875323465641167668632207899998-6377776--655785355787788406
Q ss_pred CCCEEEEEEECCCCCCCCCEEEEECCCCCCCCCCCCCCCCCEEEEHHCCCCC-HHHHHHCCCCCCCCCCCCEECCCCCC
Q ss_conf 5725999981698735584588733556421012223355412401012471-23322011002444454200046678
Q gi|254780321|r 212 YLGVMVLVRIINGQLTKGQSIRLMGTNAKYQVERIGILTPKMIDIEALYPGE-IGVMIASIKEVSHTRVGDTITDDSSP 289 (606)
Q Consensus 212 ~~G~I~~~RV~sG~lk~Gd~I~~~~~g~~~~v~~ig~~~~~~~~v~~l~aGd-VG~ii~gik~l~~~~vGDTl~~~~~p 289 (606)
..|++..|+|.+|+++.||+|.+.++++..+|..+.. +..+++++.||| |+..+.++ +..+++.||.||++++|
T Consensus 239 g~Gtvv~G~v~sG~i~~Gd~v~i~Ps~~~~~VksI~~---~~~~v~~a~aG~~v~l~L~~i-~~~dI~rG~Vl~~~~~~ 313 (426)
T PRK12317 239 GVGTVPVGRVETGVLKVGDKVVFMPAGKVGEVKSIEM---HHEELPQAEPGDNIGFNVRGV-GKNDIKRGDVAGHTDNP 313 (426)
T ss_pred CCEEEEEEEECCCCCCCCCEEEEECCCCCEEEEEEEE---CCCEEEEEECCCEEEEEEECC-CHHCCCCCCEEECCCCC
T ss_conf 8707998684438543799999967998658976886---694788995898699998367-44227786489479999
No 32
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=100.00 E-value=0 Score=365.72 Aligned_cols=172 Identities=37% Similarity=0.541 Sum_probs=156.7
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCC---CCCEEECCCHHHHHHCCEEEEEEEEEEEECCCCCEEEEEEEECCCCC
Q ss_conf 799980138987788999999829805444---43113058677987195052327999974378843899996178730
Q gi|254780321|r 13 NFSIVAHIDHGKSTLADRFIQHCRGLTERE---MSSQVLDNMDIERERGITIKAQTVRLNYTSTDAKDYQLNLIDTPGHV 89 (606)
Q Consensus 13 N~~IiaHvDhGKTTL~d~lL~~tg~i~~~~---~~~~vlD~~~~EreRGITIka~~~~~~~~~~~~~~y~iNlIDTPGH~ 89 (606)
||+|+||+|||||||+|+||+.||.+++.+ .+++++|++++||+|||||.++.+++.| ++++|||||||||.
T Consensus 1 Niai~gH~~~GKTtL~e~lL~~~g~i~r~G~v~~g~t~~D~~~eE~~r~isi~~~~~~~~~-----~~~~~n~iDtPG~~ 75 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQW-----EDTKVNLIDTPGHM 75 (237)
T ss_pred CEEEECCCCCCHHHHHHHHHHHCCHHHHCCCEECCCCCCCCHHHHHHHCCEEEEEEEEEEE-----CCEEEEEEECCCCH
T ss_conf 9899938998999999999996571222663306830378549989848703105899998-----99879998898846
Q ss_pred HHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHH--------
Q ss_conf 027999999973026899998687886558999999997099679983267887532113388877555322--------
Q gi|254780321|r 90 DFTYEVSRSLSACEGSLLVVDATQGVEAQTLANVYQAIDNNHEIITVLNKADLPSADPDRVKKQIEETIGIS-------- 161 (606)
Q Consensus 90 DF~~EV~r~l~a~dgaiLvVdA~~Gvq~QT~~~~~~A~~~~l~~I~viNKiD~~~A~~e~v~~ei~~~~g~~-------- 161 (606)
||.+|+.++|+++|+||+||||.+|||+||..+|..|.++++|+++||||||+++||++++.++|++.++..
T Consensus 76 dF~~e~~~al~~~D~av~Vv~a~~Gv~~~t~~~~~~~~~~~~P~iifiNKmDre~adf~~~l~~i~~~l~~~~~p~~~p~ 155 (237)
T cd04168 76 DFIAEVERSLSVLDGAILVISAVEGVQAQTRILWRLLRKLNIPTIIFVNKIDRAGADLEKVYQEIKEKLSSDIVPMQKVG 155 (237)
T ss_pred HHHHHHHHHHHHCCCEEEEEECCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCEEEEECCC
T ss_conf 56668988976348169999658882234499999999859985998624457899999999999999789747677775
Q ss_pred -------------------------------------HHH----------------HHHHHHHCCCCCCHHHHHHHHHHH
Q ss_conf -------------------------------------321----------------000111002232006787763210
Q gi|254780321|r 162 -------------------------------------TED----------------ALLVSAKTGEGIPLLLERIVQQLP 188 (606)
Q Consensus 162 -------------------------------------~~~----------------ii~vSAktG~GV~~LLd~Iv~~iP 188 (606)
.++ ++++||.+|.||++|||+|++++|
T Consensus 156 ~~~~~~~~~~~~~~liE~vae~DD~LlEkyLe~~elt~eel~~~L~~~~~~g~i~PV~~GSA~~n~GV~~LLd~i~~~~P 235 (237)
T cd04168 156 LAPNICETNEIDDEFWETLAEGDDELLEKYLEGGPIEELELDNELSARIAKRKVFPVYHGSALKGIGIEELLEGITKLFP 235 (237)
T ss_pred CCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCHHHHHHHHHHHCC
T ss_conf 55664445441088999876469999998857898678899999999997492988996789989599999999998778
Q ss_pred C
Q ss_conf 0
Q gi|254780321|r 189 S 189 (606)
Q Consensus 189 ~ 189 (606)
|
T Consensus 236 S 236 (237)
T cd04168 236 T 236 (237)
T ss_pred C
T ss_conf 9
No 33
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=100.00 E-value=0 Score=351.17 Aligned_cols=268 Identities=22% Similarity=0.342 Sum_probs=211.5
Q ss_pred HHCEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCC------------------CCEEECCCHHHHHHCCEEEEEEEEEEE
Q ss_conf 25317999801389877889999998298054444------------------311305867798719505232799997
Q gi|254780321|r 9 SRIRNFSIVAHIDHGKSTLADRFIQHCRGLTEREM------------------SSQVLDNMDIERERGITIKAQTVRLNY 70 (606)
Q Consensus 9 ~~IRN~~IiaHvDhGKTTL~d~lL~~tg~i~~~~~------------------~~~vlD~~~~EreRGITIka~~~~~~~ 70 (606)
+.+=||.++||||||||||..|||+.+|.+.++.. =..+||.++.|||||||| .+.|
T Consensus 25 k~~l~~v~~GhVD~GKSTl~GrlL~~~~~v~~~~~~~~~~~s~~~g~~~~~~~~a~l~D~l~~ERe~GiTI-----dva~ 99 (475)
T PRK05124 25 KSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITI-----DVAY 99 (475)
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEEECCCHHHHHCCCEE-----EEEE
T ss_conf 98579999905579778888999998199788999999999998288777222444205998898669716-----9567
Q ss_pred ECCCCCEEEEEEEECCCCCHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCC-EEEEECCCCCCCCC---
Q ss_conf 43788438999961787300279999999730268999986878865589999999970996-79983267887532---
Q gi|254780321|r 71 TSTDAKDYQLNLIDTPGHVDFTYEVSRSLSACEGSLLVVDATQGVEAQTLANVYQAIDNNHE-IITVLNKADLPSAD--- 146 (606)
Q Consensus 71 ~~~~~~~y~iNlIDTPGH~DF~~EV~r~l~a~dgaiLvVdA~~Gvq~QT~~~~~~A~~~~l~-~I~viNKiD~~~A~--- 146 (606)
.++++++++++++|||||.||.--....-+-+|.|||||||.+|+++||++|++++...|++ +|++|||||+.+.+
T Consensus 100 ~~f~t~~r~~~i~DaPGH~~f~~NMitGas~aD~aiLvVdA~~G~~~QTreH~~i~~llGI~~iIVaVNKMDlV~~~~~~ 179 (475)
T PRK05124 100 RYFSTEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHSFIATLLGIKHLVVAVNKMDLVDYSEEV 179 (475)
T ss_pred EEEECCCEEEEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEEECHHCCCCCHHH
T ss_conf 89953876899973796387788898888767889999989889478889999999865998599998504313543999
Q ss_pred CCCHHHHHHHHH---HHHHH-HHHHHHHHCCCCC------------CHHHHHHHHHHHCCCCHHHHHCCCCCCCCCEEEC
Q ss_conf 113388877555---32232-1000111002232------------0067877632100011112201233101210114
Q gi|254780321|r 147 PDRVKKQIEETI---GISTE-DALLVSAKTGEGI------------PLLLERIVQQLPSPTSPEGANAPLKALLIDSWYN 210 (606)
Q Consensus 147 ~e~v~~ei~~~~---g~~~~-~ii~vSAktG~GV------------~~LLd~Iv~~iP~P~~~~~~~~Pl~alVfds~~D 210 (606)
++++..++.+++ |+.++ .++|+||.+|.|| ..||+++ +.++.|.. ..+.|||+.|-+..-.
T Consensus 180 f~~I~~e~~~~l~~~g~~~~v~~IPISal~GdNIv~~S~~m~WY~GptLle~L-e~~~~~~~--~~~~pfRlPVq~V~r~ 256 (475)
T PRK05124 180 FERIREDYLTFAEQLPGNLDIRFVPLSALEGDNVVSQSESMPWYSGPTLLEVL-ETVDIQRE--VDAQPFRFPVQYVNRP 256 (475)
T ss_pred HHHHHHHHHHHHHHCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCHHHHH-HCCCCCCC--CCCCCCCCCCEEEECC
T ss_conf 99999999999997499888507754134576762156678745675399998-55888876--5556655665798626
Q ss_pred CCCCEEEEEEECCCCCCCCCEEEEECCCCCCCCCCCCCCCCCEEEEHHCCCCCHHHHHHCCCCCCCCCCCCEECCCCCC
Q ss_conf 7572599998169873558458873355642101222335541240101247123322011002444454200046678
Q gi|254780321|r 211 SYLGVMVLVRIINGQLTKGQSIRLMGTNAKYQVERIGILTPKMIDIEALYPGEIGVMIASIKEVSHTRVGDTITDDSSP 289 (606)
Q Consensus 211 ~~~G~I~~~RV~sG~lk~Gd~I~~~~~g~~~~v~~ig~~~~~~~~v~~l~aGdVG~ii~gik~l~~~~vGDTl~~~~~p 289 (606)
.+-++...|||.||++++||+|.++++|++-+|.+|..+. .+++++.|||- +...+++--++..||.||++++|
T Consensus 257 ~~~~rg~~G~I~sG~i~~GD~V~vlPsg~~a~Vk~I~~~~---~~~~~A~aG~s--V~l~L~deiDIsRGdVl~~~~~~ 330 (475)
T PRK05124 257 NLDFRGYAGTLASGVVKVGDRVKVLPSGKESNVARIVTFD---GDLEEAFAGEA--ITLVLEDEIDISRGDLLVAADEA 330 (475)
T ss_pred CCCCEEEEEEEEECEECCCCEEEECCCCCEEEEEEEEECC---CCCCCCCCCCE--EEEEEECCCCCCCCCEEECCCCC
T ss_conf 8773168899713327179989993899758989999658---65254389987--99996034468998389738998
No 34
>PTZ00336 elongation factor 1-alpha; Provisional
Probab=100.00 E-value=0 Score=354.38 Aligned_cols=265 Identities=26% Similarity=0.453 Sum_probs=212.1
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHCCCCCCCCC-------C---------CEEECCCHHHHHHCCEEEEEEEEEEEECCCC
Q ss_conf 17999801389877889999998298054444-------3---------1130586779871950523279999743788
Q gi|254780321|r 12 RNFSIVAHIDHGKSTLADRFIQHCRGLTEREM-------S---------SQVLDNMDIERERGITIKAQTVRLNYTSTDA 75 (606)
Q Consensus 12 RN~~IiaHvDhGKTTL~d~lL~~tg~i~~~~~-------~---------~~vlD~~~~EreRGITIka~~~~~~~~~~~~ 75 (606)
=||+++||||||||||+.|||+.+|.++++.. . ..+||.+++|||||||| .+.|.+++.
T Consensus 8 lni~~~GhVD~GKSTL~G~Ll~~~~~v~~~~l~~~~~~~~~~g~~s~~~a~~~D~~~~Er~rGiTi-----d~~~~~f~t 82 (449)
T PTZ00336 8 MNLVVVGHVDAGKSTATGHLIYKCGGIDKRTIEKFEKEAAEIGKASFKYAWVLDKLKAERERGITI-----DIALWKFES 82 (449)
T ss_pred EEEEEEECCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHCCCHHHHCCCEEE-----EEEEEEEEC
T ss_conf 399999277896888899999874884789999999999871875143254512772232287589-----867999974
Q ss_pred CEEEEEEEECCCCCHHHHHHHHHHHHCCEEEEEEECCCCCCH-------HHHHHHHHHHHCCCC-EEEEECCCCCC--C-
Q ss_conf 438999961787300279999999730268999986878865-------589999999970996-79983267887--5-
Q gi|254780321|r 76 KDYQLNLIDTPGHVDFTYEVSRSLSACEGSLLVVDATQGVEA-------QTLANVYQAIDNNHE-IITVLNKADLP--S- 144 (606)
Q Consensus 76 ~~y~iNlIDTPGH~DF~~EV~r~l~a~dgaiLvVdA~~Gvq~-------QT~~~~~~A~~~~l~-~I~viNKiD~~--~- 144 (606)
.+++++|||+|||.||.--.....+.+|.|||||||.+|+++ ||++|+.+|...|++ +|++|||||.+ +
T Consensus 83 ~~~~~~iiD~PGH~~fi~nmi~Gas~aD~aiLVVdA~~G~~e~g~~~~gQTreHl~i~~~Lgv~~iiV~vNKmD~~~v~~ 162 (449)
T PTZ00336 83 PKSVFTIIDAPGHRDFIKNMITGTSQADAAILMIDSTHGGFEAGISKDGQTREHALLAFTLGVKQMVVCCNKMDDKTVTY 162 (449)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCCEECCCCCCCCCHHHHHHHHHCCCCEEEEEEECCCCCCCCC
T ss_conf 98489998689468889999976500676799998787741035566775399999998669977999986201566211
Q ss_pred --CCCCCHHHHHHHHH---HHHHHH--HHHHHHHCCCCCC------------HHHHHHHHHHHCCCCHHHHHCCCCCCCC
Q ss_conf --32113388877555---322321--0001110022320------------0678776321000111122012331012
Q gi|254780321|r 145 --ADPDRVKKQIEETI---GISTED--ALLVSAKTGEGIP------------LLLERIVQQLPSPTSPEGANAPLKALLI 205 (606)
Q Consensus 145 --A~~e~v~~ei~~~~---g~~~~~--ii~vSAktG~GV~------------~LLd~Iv~~iP~P~~~~~~~~Pl~alVf 205 (606)
.+++++..++..++ |+..++ ++|+||.+|.|+- .||+++ +.+++|. +..+.||++.|-
T Consensus 163 ~~~r~~~i~~e~~~~l~~~g~~~~~v~~IPiSa~~Gdni~~~s~~~~Wy~GptLl~~L-d~~~~~~--r~~~~p~r~pV~ 239 (449)
T PTZ00336 163 AQSRYDEISKEVGAYLKRVGYNPEKVRFIPISGWQGDNMIEKSDNMPWYKGPTLLDAL-DMLEPPV--RPVDKPLRLPLQ 239 (449)
T ss_pred CHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCHHHHHH-HCCCCCC--CCCCCCCCCCCC
T ss_conf 3789999999999999874999000543542010477753265557541052489997-5448987--756676423401
Q ss_pred CEEECCCCCEEEEEEECCCCCCCCCEEEEECCCCCCCCCCCCCCCCCEEEEHHCCCCC-HHHHHHCCCCCCCCCCCCEEC
Q ss_conf 1011475725999981698735584588733556421012223355412401012471-233220110024444542000
Q gi|254780321|r 206 DSWYNSYLGVMVLVRIINGQLTKGQSIRLMGTNAKYQVERIGILTPKMIDIEALYPGE-IGVMIASIKEVSHTRVGDTIT 284 (606)
Q Consensus 206 ds~~D~~~G~I~~~RV~sG~lk~Gd~I~~~~~g~~~~v~~ig~~~~~~~~v~~l~aGd-VG~ii~gik~l~~~~vGDTl~ 284 (606)
+.+.-+..|.+..|||.+|++++||+|.+++++++.+|..|.. +..+++++.||| ||..+.++ +..+++.||.++
T Consensus 240 ~vf~~~g~gtvv~G~V~sG~v~~Gd~V~i~Ps~~~~~VksI~~---~~~~v~~A~aG~~V~i~L~~i-~~~dI~rGdVl~ 315 (449)
T PTZ00336 240 DVYKIGGIGTVPVGRVETGIMKPGDVVTFAPANVTTEVKSIEM---HHEQLAEAQPGDNVGFNVKNV-SVKDIRRGNVCG 315 (449)
T ss_pred EEEECCCCCEEEEEEEECCCCCCCCEEEECCCCCEEEEEEEEE---CCCEECEECCCCEEEEECCCC-CHHCCCCCCEEE
T ss_conf 0773278831888999436305899999917998799989998---993859677998478924887-353078863996
Q ss_pred CCCC
Q ss_conf 4667
Q gi|254780321|r 285 DDSS 288 (606)
Q Consensus 285 ~~~~ 288 (606)
+..+
T Consensus 316 ~~~~ 319 (449)
T PTZ00336 316 NSKN 319 (449)
T ss_pred CCCC
T ss_conf 2899
No 35
>PTZ00141 elongation factor 1 alpha; Provisional
Probab=100.00 E-value=0 Score=349.83 Aligned_cols=266 Identities=25% Similarity=0.403 Sum_probs=214.1
Q ss_pred CEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCC-----------C-----CEEECCCHHHHHHCCEEEEEEEEEEEECCC
Q ss_conf 317999801389877889999998298054444-----------3-----113058677987195052327999974378
Q gi|254780321|r 11 IRNFSIVAHIDHGKSTLADRFIQHCRGLTEREM-----------S-----SQVLDNMDIERERGITIKAQTVRLNYTSTD 74 (606)
Q Consensus 11 IRN~~IiaHvDhGKTTL~d~lL~~tg~i~~~~~-----------~-----~~vlD~~~~EreRGITIka~~~~~~~~~~~ 74 (606)
.=||+++||||||||||+.|||+.+|.++++.. . +.+||.++.|||||||| .+.|.+++
T Consensus 7 ~l~i~~~GhVD~GKSTL~G~Ll~~~g~v~~~~~~~~~~~~~~~g~~~~~~a~~~D~~~~Er~rGiTi-----dv~~~~f~ 81 (443)
T PTZ00141 7 HINLVVIGHVDSGKSTTTGHLIYKLGGIDKRTIEKFEKESAEMGKGSFKYAWVLDKLKAERERGITI-----DIALWKFE 81 (443)
T ss_pred EEEEEEECCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCEEHHHHCCCHHHHHCCCEE-----EEEEEEEE
T ss_conf 6599999477982888899999873884688999998888871787200044530776676367107-----34799994
Q ss_pred CCEEEEEEEECCCCCHHHHHHHHHHHHCCEEEEEEECCCCCCH-------HHHHHHHHHHHCCCC-EEEEECCCCCCCC-
Q ss_conf 8438999961787300279999999730268999986878865-------589999999970996-7998326788753-
Q gi|254780321|r 75 AKDYQLNLIDTPGHVDFTYEVSRSLSACEGSLLVVDATQGVEA-------QTLANVYQAIDNNHE-IITVLNKADLPSA- 145 (606)
Q Consensus 75 ~~~y~iNlIDTPGH~DF~~EV~r~l~a~dgaiLvVdA~~Gvq~-------QT~~~~~~A~~~~l~-~I~viNKiD~~~A- 145 (606)
..+++++|||+|||.||.--.....+.+|.|||||||.+|++. ||++|+.+|...|++ +|++|||||+.+.
T Consensus 82 t~~~~~~iiD~PGH~~fi~nmi~Gas~aD~ailvVdA~~G~~e~gf~~~gQTreH~~i~~~lgv~~iIVaVNKmD~v~~~ 161 (443)
T PTZ00141 82 TPKYYYTVIDAPGHRDFIKNMITGTSQADVALLVVPAEVGGFEGAFSKEGQTREHALLAFTLGVKQIIVGINKMDTCDYK 161 (443)
T ss_pred CCCEEEEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHCCCCEEEEEEEEECCCCCH
T ss_conf 39889999989972888999996341077589999867785213466678639999999973997599999962156660
Q ss_pred --CCCCHHHHHHHHH---HHHHHH--HHHHHHHCCCCC------------CHHHHHHHHHHHCCCCHHHHHCCCCCCCCC
Q ss_conf --2113388877555---322321--000111002232------------006787763210001111220123310121
Q gi|254780321|r 146 --DPDRVKKQIEETI---GISTED--ALLVSAKTGEGI------------PLLLERIVQQLPSPTSPEGANAPLKALLID 206 (606)
Q Consensus 146 --~~e~v~~ei~~~~---g~~~~~--ii~vSAktG~GV------------~~LLd~Iv~~iP~P~~~~~~~~Pl~alVfd 206 (606)
+++++..++.+++ |+..++ ++|+||.+|.|+ ..|++++ +.+++|. ...+.||++.|-+
T Consensus 162 e~~f~~i~~~~~~~l~~~g~~~~~i~~iPiSa~~Gdni~~~s~~~~Wy~G~tLle~L-d~~~~~~--~~~~~p~r~pI~~ 238 (443)
T PTZ00141 162 EDRYEEIQKEVCGYLKKVGYNAEKVPFVPISGFEGDNMIEKSDKMPWYKGKTLVEAL-DTMEPPK--RPVDKPLRLPLQG 238 (443)
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCCCCCCCEEHHHHHHHHH-HCCCCCC--CCCCCCCCCCEEE
T ss_conf 999999999999999973999566618963412466532466556442356899998-5689875--6555665340503
Q ss_pred EEECCCCCEEEEEEECCCCCCCCCEEEEECCCCCCCCCCCCCCCCCEEEEHHCCCCC-HHHHHHCCCCCCCCCCCCEECC
Q ss_conf 011475725999981698735584588733556421012223355412401012471-2332201100244445420004
Q gi|254780321|r 207 SWYNSYLGVMVLVRIINGQLTKGQSIRLMGTNAKYQVERIGILTPKMIDIEALYPGE-IGVMIASIKEVSHTRVGDTITD 285 (606)
Q Consensus 207 s~~D~~~G~I~~~RV~sG~lk~Gd~I~~~~~g~~~~v~~ig~~~~~~~~v~~l~aGd-VG~ii~gik~l~~~~vGDTl~~ 285 (606)
.+.-+..|.+..|+|.+|+++.||+|.+++++.+.+|..|.. ...+++++.||| |+..+.++ +..+++.||.||+
T Consensus 239 v~~~~g~gtvv~G~V~sG~i~~Gd~v~i~Ps~~~~~VksI~~---~~~~v~~A~aG~~V~i~L~~i-~~~dI~rG~Vl~~ 314 (443)
T PTZ00141 239 VYKIGGIGTVPVGRVETGILKAGMVLTFAPSAVTTECKSVEM---HHEVVEEARPGDNVGFNVKNV-STKDIKRGHVASD 314 (443)
T ss_pred EEEECCCCEEEEEEEEEEEEECCCEEEECCCCCEEEEEEEEE---CCCEECEECCCCEEEEECCCC-CHHHCCCCEEEEC
T ss_conf 886168732787676156995697899877998899989998---996908786998379945898-6530278619766
Q ss_pred CCC
Q ss_conf 667
Q gi|254780321|r 286 DSS 288 (606)
Q Consensus 286 ~~~ 288 (606)
+.+
T Consensus 315 ~~~ 317 (443)
T PTZ00141 315 SKN 317 (443)
T ss_pred CCC
T ss_conf 999
No 36
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=0 Score=348.84 Aligned_cols=273 Identities=30% Similarity=0.500 Sum_probs=227.0
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCC----------------CEEECCCHHHHHHCCEEEEEEEEEEEECCCC
Q ss_conf 179998013898778899999982980544443----------------1130586779871950523279999743788
Q gi|254780321|r 12 RNFSIVAHIDHGKSTLADRFIQHCRGLTEREMS----------------SQVLDNMDIERERGITIKAQTVRLNYTSTDA 75 (606)
Q Consensus 12 RN~~IiaHvDhGKTTL~d~lL~~tg~i~~~~~~----------------~~vlD~~~~EreRGITIka~~~~~~~~~~~~ 75 (606)
-|++.|||||||||||..||||.+|.|+.+.+. ..+||++.+|||||+|| ...+..++.
T Consensus 8 ~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi-----~~~~~~fet 82 (428)
T COG5256 8 LNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTI-----DVAHSKFET 82 (428)
T ss_pred EEEEEECCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHCCEEE-----EEEEEEEEC
T ss_conf 289998378787034455657773797989999999999861977168999853886678666689-----977788643
Q ss_pred CEEEEEEEECCCCCHHHHHHHHHHHHCCEEEEEEECCCC-------CCHHHHHHHHHHHHCCCC-EEEEECCCCCCCCC-
Q ss_conf 438999961787300279999999730268999986878-------865589999999970996-79983267887532-
Q gi|254780321|r 76 KDYQLNLIDTPGHVDFTYEVSRSLSACEGSLLVVDATQG-------VEAQTLANVYQAIDNNHE-IITVLNKADLPSAD- 146 (606)
Q Consensus 76 ~~y~iNlIDTPGH~DF~~EV~r~l~a~dgaiLvVdA~~G-------vq~QT~~~~~~A~~~~l~-~I~viNKiD~~~A~- 146 (606)
..|.++|||||||-||.-+.....+.+|.|+|||||..| ++.||++|..+|...|+. +|++|||||.++.|
T Consensus 83 ~k~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tlGi~~lIVavNKMD~v~wde 162 (428)
T COG5256 83 DKYNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTLGIKQLIVAVNKMDLVSWDE 162 (428)
T ss_pred CCCEEEEEECCCHHHHHHHHHCCHHHCCEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEEECCCCCCCCH
T ss_conf 77058996078467789876313313367999998889831014365875167899998569756999997156666279
Q ss_pred --CCCHHHHHHHH---HHHHHHH--HHHHHHHCCCCC------------CHHHHHHHHHHHCCCCHHHHHCCCCCCCCCE
Q ss_conf --11338887755---5322321--000111002232------------0067877632100011112201233101210
Q gi|254780321|r 147 --PDRVKKQIEET---IGISTED--ALLVSAKTGEGI------------PLLLERIVQQLPSPTSPEGANAPLKALLIDS 207 (606)
Q Consensus 147 --~e~v~~ei~~~---~g~~~~~--ii~vSAktG~GV------------~~LLd~Iv~~iP~P~~~~~~~~Pl~alVfds 207 (606)
++++..++..+ +|+.+++ .+|+||.+|.|+ ..||+++- .+.+|.. ..|+||+..|.|.
T Consensus 163 ~rf~ei~~~v~~l~k~~G~~~~~v~FIPiSg~~G~Nl~~~s~~~pWY~GpTLleaLd-~~~~p~~--~~d~Plr~pI~~v 239 (428)
T COG5256 163 ERFEEIVSEVSKLLKMVGYNPKDVPFIPISGFKGDNLTKKSENMPWYKGPTLLEALD-QLEPPER--PLDKPLRLPIQDV 239 (428)
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHH-CCCCCCC--CCCCCEEEEEEEE
T ss_conf 999999999999999719986677079622446776332676786724871898974-5578987--7788817680017
Q ss_pred EECCCCCEEEEEEECCCCCCCCCEEEEECCCCCCCCCCCCCCCCCEEEEHHCCCCC-HHHHHHCCCCCCCCCCCCEECCC
Q ss_conf 11475725999981698735584588733556421012223355412401012471-23322011002444454200046
Q gi|254780321|r 208 WYNSYLGVMVLVRIINGQLTKGQSIRLMGTNAKYQVERIGILTPKMIDIEALYPGE-IGVMIASIKEVSHTRVGDTITDD 286 (606)
Q Consensus 208 ~~D~~~G~I~~~RV~sG~lk~Gd~I~~~~~g~~~~v~~ig~~~~~~~~v~~l~aGd-VG~ii~gik~l~~~~vGDTl~~~ 286 (606)
+--...|.+.++||.+|.|++||+|.++..+..-+++.+ ..+..+.+.+.+|| ||+-+.++ ...+++.||.+++.
T Consensus 240 ~~i~~~gtv~vGrVEsG~i~~g~~v~~~p~~~~~evksi---e~~~~~~~~a~~GD~i~~~vrgv-~~~dI~~Gdv~~~~ 315 (428)
T COG5256 240 YSISGIGTVPVGRVESGVIKPGQKVTFMPAGVVGEVKSI---EMHHEEISQAEPGDNVGFNVRGV-EKNDIRRGDVIGHS 315 (428)
T ss_pred EEECCCCEEEEEEEEEEEECCCCEEEEECCCCEEEEEEE---EECCCCCCCCCCCCEEEEEECCC-CHHCCCCCCEECCC
T ss_conf 871688547887886134516987999648612787645---61266544478987688983577-54316776574047
Q ss_pred CCCCCCCCCCC
Q ss_conf 67853236455
Q gi|254780321|r 287 SSPTTSALPGF 297 (606)
Q Consensus 287 ~~p~~~~Lp~~ 297 (606)
++|.... +.|
T Consensus 316 ~n~~t~~-~~f 325 (428)
T COG5256 316 DNPPTVS-PEF 325 (428)
T ss_pred CCCCCCC-CCE
T ss_conf 8886435-131
No 37
>PRK12736 elongation factor Tu; Reviewed
Probab=100.00 E-value=0 Score=352.17 Aligned_cols=279 Identities=22% Similarity=0.328 Sum_probs=211.8
Q ss_pred CCCCCCCH-HHCEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCC-CEEECCCHHHHHHCCEEEEEEEEEEEECCCCCEE
Q ss_conf 98889985-253179998013898778899999982980544443-1130586779871950523279999743788438
Q gi|254780321|r 1 MQKKPTPL-SRIRNFSIVAHIDHGKSTLADRFIQHCRGLTEREMS-SQVLDNMDIERERGITIKAQTVRLNYTSTDAKDY 78 (606)
Q Consensus 1 ~~~~~~p~-~~IRN~~IiaHvDhGKTTL~d~lL~~tg~i~~~~~~-~~vlD~~~~EreRGITIka~~~~~~~~~~~~~~y 78 (606)
|+|+-..- +.-=|++++||||||||||+.+|+...+....+.+. ...+|.+++||+|||||.. .+..++++++
T Consensus 1 ~~~~~~~~~k~~~ni~~~GHVD~GKSTL~g~L~~~~~~~~~~~~~~~~~~D~~~eEr~rGiTid~-----~~~~~~t~~~ 75 (394)
T PRK12736 1 MAKEKFERSKPHVNIGTIGHVDHGKTTLTAAITKVLAERGLAQAKDYASIDAAPEEKARGITINT-----AHVEYETEKR 75 (394)
T ss_pred CCCCCCCCCCCEEEEEEEEECCCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHCCCCEEEE-----EEEEEECCCE
T ss_conf 96001278998749999951288489899897504545065102222331166556247821784-----1899972883
Q ss_pred EEEEEECCCCCHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCC-EEEEECCCCCCCC--CCCCHHHHHH
Q ss_conf 999961787300279999999730268999986878865589999999970996-7998326788753--2113388877
Q gi|254780321|r 79 QLNLIDTPGHVDFTYEVSRSLSACEGSLLVVDATQGVEAQTLANVYQAIDNNHE-IITVLNKADLPSA--DPDRVKKQIE 155 (606)
Q Consensus 79 ~iNlIDTPGH~DF~~EV~r~l~a~dgaiLvVdA~~Gvq~QT~~~~~~A~~~~l~-~I~viNKiD~~~A--~~e~v~~ei~ 155 (606)
.+++||+|||.||.....+..+.+|.|||||||.+|+++||++|+.++...|++ +|++|||||+.+. ..+.+..++.
T Consensus 76 ~~~~iD~PGH~~fi~nmi~Ga~~~D~alLVV~A~~G~~~QT~EHl~l~~~lgv~~~IV~vnK~D~v~~~~~~~~v~~~i~ 155 (394)
T PRK12736 76 HYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLARQVGVPYIVVFLNKVDLVDDEELLELVEMEVR 155 (394)
T ss_pred EEEEEECCCCHHHHCCEEEEECCCCEEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 69998889725431104443534665899998587746779999999998299915999988789983999999999999
Q ss_pred HHH---HHHHHH--HHHHHHHCCC--------CCCHHHHHHHHHHHCCCCHHHHHCCCCCCCCCEEECCCCCEEEEEEEC
Q ss_conf 555---322321--0001110022--------320067877632100011112201233101210114757259999816
Q gi|254780321|r 156 ETI---GISTED--ALLVSAKTGE--------GIPLLLERIVQQLPSPTSPEGANAPLKALLIDSWYNSYLGVMVLVRII 222 (606)
Q Consensus 156 ~~~---g~~~~~--ii~vSAktG~--------GV~~LLd~Iv~~iP~P~~~~~~~~Pl~alVfds~~D~~~G~I~~~RV~ 222 (606)
+++ +++.++ ++++||.+|. ++..||+++-+.+|.|.. +.+.||++.|.+.+..+..|.+..|||.
T Consensus 156 ~~l~~~g~~~~~ip~i~~s~~~~~~~~~~~~~~i~~Ll~~ld~~~~~p~r--~~~~p~r~~Id~vf~v~G~GtVvtG~V~ 233 (394)
T PRK12736 156 ELLSEYDFPGDDIPVIRGSALKALEGDPKWEDAIMELMDAVDEYIPTPER--DTDKPFLMPVEDVFSITGRGTVVTGRVE 233 (394)
T ss_pred HHHHHCCCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCCC--CCCCCEEEEEEEEEEECCCEEEEEEEEE
T ss_conf 99987699912060998454361368873577899999999852778888--7777628871117860897589999980
Q ss_pred CCCCCCCCEEEEECCCCCCCCCCCCCCCCCEEEEHHCCCCC-HHHHHHCCCCCCCCCCCCEECCCCC
Q ss_conf 98735584588733556421012223355412401012471-2332201100244445420004667
Q gi|254780321|r 223 NGQLTKGQSIRLMGTNAKYQVERIGILTPKMIDIEALYPGE-IGVMIASIKEVSHTRVGDTITDDSS 288 (606)
Q Consensus 223 sG~lk~Gd~I~~~~~g~~~~v~~ig~~~~~~~~v~~l~aGd-VG~ii~gik~l~~~~vGDTl~~~~~ 288 (606)
+|+++.||++.+++.+...++ .+.-+..+..+++++.||| ++..+.|+ +.++++.||.||.++.
T Consensus 234 sG~i~~Gd~v~i~~~~~~~~~-~VrsI~~~~~~v~~a~aG~~v~l~L~gi-d~~~i~rG~vL~~~~~ 298 (394)
T PRK12736 234 RGTVKVGDEVEIVGIKETQKT-TVTGVEMFRKLLDEGQAGDNVGVLLRGV-DRDEVERGQVLAKPGS 298 (394)
T ss_pred ECEEECCCEEEEEECCCCCEE-EEEEEEECCCCCCCCCCCCEEEEEECCC-CHHHCCCEEEEECCCC
T ss_conf 146865998999707998079-9998736783724804767899997689-9899671669966998
No 38
>PRK00049 elongation factor Tu; Reviewed
Probab=100.00 E-value=0 Score=346.20 Aligned_cols=277 Identities=23% Similarity=0.334 Sum_probs=207.0
Q ss_pred CCCCCCCHH-HCEEEEEECCCCCCHHHHHHHHHHHCCCCCCC--CCCCEEECCCHHHHHHCCEEEEEEEEEEEECCCCCE
Q ss_conf 988899852-53179998013898778899999982980544--443113058677987195052327999974378843
Q gi|254780321|r 1 MQKKPTPLS-RIRNFSIVAHIDHGKSTLADRFIQHCRGLTER--EMSSQVLDNMDIERERGITIKAQTVRLNYTSTDAKD 77 (606)
Q Consensus 1 ~~~~~~p~~-~IRN~~IiaHvDhGKTTL~d~lL~~tg~i~~~--~~~~~vlD~~~~EreRGITIka~~~~~~~~~~~~~~ 77 (606)
|.||...-+ --=|++++||||||||||+.+|+........+ ......+|.+++||+|||||.. .+..++.++
T Consensus 1 ~~~~~~~~~kp~~ni~~~GHVD~GKSTL~g~Lt~~l~~~~g~~~~~~~~~~D~~~eEr~rGiTid~-----~~~~~~t~~ 75 (397)
T PRK00049 1 MAKEKFERTKPHVNVGTIGHVDHGKTTLTAAITKVLAKKYGGAEAKAYDQIDNAPEEKARGITINT-----AHVEYETEK 75 (397)
T ss_pred CCCCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHCCCCHHHHHCCCEEEE-----EEEEEECCC
T ss_conf 973342789983299999125888999999998666654385310013330257667625816998-----799997288
Q ss_pred EEEEEEECCCCCHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCC-EEEEECCCCCCC-C-CCCCHHHHH
Q ss_conf 8999961787300279999999730268999986878865589999999970996-799832678875-3-211338887
Q gi|254780321|r 78 YQLNLIDTPGHVDFTYEVSRSLSACEGSLLVVDATQGVEAQTLANVYQAIDNNHE-IITVLNKADLPS-A-DPDRVKKQI 154 (606)
Q Consensus 78 y~iNlIDTPGH~DF~~EV~r~l~a~dgaiLvVdA~~Gvq~QT~~~~~~A~~~~l~-~I~viNKiD~~~-A-~~e~v~~ei 154 (606)
+.+++||+|||.||.--.....+.+|.|+|||||.+|+|+||++|+.+|...|++ +|++|||||+.+ . .++.+..++
T Consensus 76 ~~~~~iD~PGH~~fiknmI~Ga~~~D~alLVV~A~~G~~~QT~EHl~l~~~LGv~~~iV~vnK~D~v~~~~~~~~v~~~i 155 (397)
T PRK00049 76 RHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFLNKCDMVDDEELLELVEMEV 155 (397)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHH
T ss_conf 14999517863888999873012156799999748886652899999999809982799998668888599999999999
Q ss_pred HHHH---HHHHHH--HHHHHHHCCC----------CCCHHHHHHHHHHHCCCCHHHHHCCCCCCCCCEEECCCCCEEEEE
Q ss_conf 7555---322321--0001110022----------320067877632100011112201233101210114757259999
Q gi|254780321|r 155 EETI---GISTED--ALLVSAKTGE----------GIPLLLERIVQQLPSPTSPEGANAPLKALLIDSWYNSYLGVMVLV 219 (606)
Q Consensus 155 ~~~~---g~~~~~--ii~vSAktG~----------GV~~LLd~Iv~~iP~P~~~~~~~~Pl~alVfds~~D~~~G~I~~~ 219 (606)
.+++ ++..++ ++++||.+|. |+..||+++-+++|.|. ++.++||++.|-+.+.-+..|.|..|
T Consensus 156 ~~~l~~~~f~~~~ipiv~~S~~~~~~~~~~~~~~~~i~~Ll~~ld~~~~~p~--r~~~~p~r~~Id~vf~i~G~GtVVtG 233 (397)
T PRK00049 156 RELLSKYDFPGDDTPIIRGSALKALEEIGDPEWEAKILELMEAVDSYIPEPE--RAIDKPFLMPIEDVFSISGRGTVVTG 233 (397)
T ss_pred HHHHHHCCCCCCCCCEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCC--CCCCCCEEEEECCEEEECCCCEEEEE
T ss_conf 9999846998444768985500311477865317899999999986477888--88888607772338876797279998
Q ss_pred EECCCCCCCCCEEEEECCC--CCCCCCCCCCCCCCEEEEHHCCCCC-HHHHHHCCCCCCCCCCCCEECCCCC
Q ss_conf 8169873558458873355--6421012223355412401012471-2332201100244445420004667
Q gi|254780321|r 220 RIINGQLTKGQSIRLMGTN--AKYQVERIGILTPKMIDIEALYPGE-IGVMIASIKEVSHTRVGDTITDDSS 288 (606)
Q Consensus 220 RV~sG~lk~Gd~I~~~~~g--~~~~v~~ig~~~~~~~~v~~l~aGd-VG~ii~gik~l~~~~vGDTl~~~~~ 288 (606)
+|.+|+++.||+|.+++.+ .+.++.. +..+..+++++.||| ++..+.|+ +.++++.|+.||.+..
T Consensus 234 tv~sG~i~~Gd~v~i~~~~~~~~~~Vks---Iq~~~~~v~~a~aG~~v~i~L~gi-~~~~I~rG~vL~~p~~ 301 (397)
T PRK00049 234 RVERGIIKVGEEVEIVGIRDTQKTTVTG---VEMFRKLLDEGQAGDNVGLLLRGI-KREDVERGQVLAKPGS 301 (397)
T ss_pred EEEEEEECCCCEEEEEECCCCCEEEEEE---EEECCEEEEEECCCCEEEEEECCC-CHHHCCCCCEEECCCC
T ss_conf 9800056079989996069884799999---996270702635887799997799-8898576019956998
No 39
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=100.00 E-value=0 Score=345.38 Aligned_cols=173 Identities=40% Similarity=0.616 Sum_probs=157.0
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCCC-CCEEECCCHHHHHHCCEEEEEEEEEEEECCCCCEEEEEEEECCCCCHH
Q ss_conf 7999801389877889999998298054444-311305867798719505232799997437884389999617873002
Q gi|254780321|r 13 NFSIVAHIDHGKSTLADRFIQHCRGLTEREM-SSQVLDNMDIERERGITIKAQTVRLNYTSTDAKDYQLNLIDTPGHVDF 91 (606)
Q Consensus 13 N~~IiaHvDhGKTTL~d~lL~~tg~i~~~~~-~~~vlD~~~~EreRGITIka~~~~~~~~~~~~~~y~iNlIDTPGH~DF 91 (606)
||||+||+|||||||+++||+.++.+.++.. ..+++|++++||||||||.+....+.| +++++||||||||.||
T Consensus 1 Nv~iiGh~d~GKTTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~E~~rgiTi~~~~~~~~~-----~~~~i~~iDTPGh~~f 75 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEW-----PDRRVNFIDTPGHEDF 75 (189)
T ss_pred CEEEECCCCCCHHHHHHHHHHHCCCCCCCCCEEEEEECCCHHHHHCCCEEEEEEEEEEE-----CCEEEEEEECCCCHHH
T ss_conf 98999179989999999999764723568625888505777888638413222799998-----9989999969981889
Q ss_pred HHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCC-CCCCCHHHHHHHHHHHH---------
Q ss_conf 79999999730268999986878865589999999970996799832678875-32113388877555322---------
Q gi|254780321|r 92 TYEVSRSLSACEGSLLVVDATQGVEAQTLANVYQAIDNNHEIITVLNKADLPS-ADPDRVKKQIEETIGIS--------- 161 (606)
Q Consensus 92 ~~EV~r~l~a~dgaiLvVdA~~Gvq~QT~~~~~~A~~~~l~~I~viNKiD~~~-A~~e~v~~ei~~~~g~~--------- 161 (606)
..++.++++++|+|||||||.+|+++||+.+|.++...++|+|+||||||+.+ ++++++.+|+.+.+...
T Consensus 76 ~~~~~~~l~~aD~ailvVda~~G~~~qt~~~~~~~~~~~~p~iv~iNKiD~~~~~~~~~~~~ei~~~l~~~~~~~~~~~~ 155 (189)
T cd00881 76 SSEVIRGLSVSDGAILVVDANEGVQPQTREHLRIAREGGLPIIVAINKIDRVGEEDLEEVLREIKELLGLIGFISTKEEG 155 (189)
T ss_pred HHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHC
T ss_conf 99999998646856999987989987899999999976998799998971877562999999999998753210232110
Q ss_pred -----HHHHHHHHHHCCCCCCHHHHHHHHHHHCC
Q ss_conf -----32100011100223200678776321000
Q gi|254780321|r 162 -----TEDALLVSAKTGEGIPLLLERIVQQLPSP 190 (606)
Q Consensus 162 -----~~~ii~vSAktG~GV~~LLd~Iv~~iP~P 190 (606)
...++++||++|.||++|||+|++++|+|
T Consensus 156 ~~~~~~~piv~iSA~~G~gv~~Lld~i~~~lP~p 189 (189)
T cd00881 156 TRNGLLVPIVPGSALTGIGVEELLEAIVEHLPPP 189 (189)
T ss_pred CCCCCCCEEEEEECCCCCCHHHHHHHHHHHCCCC
T ss_conf 1258877599988867869799999999768799
No 40
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=100.00 E-value=0 Score=346.98 Aligned_cols=174 Identities=27% Similarity=0.411 Sum_probs=147.1
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHCCCCCCCC-CCCEEECCCHHHHHHCCEEEEEEEEEEEECCCCCEEEEEEEECCCCCH
Q ss_conf 1799980138987788999999829805444-431130586779871950523279999743788438999961787300
Q gi|254780321|r 12 RNFSIVAHIDHGKSTLADRFIQHCRGLTERE-MSSQVLDNMDIERERGITIKAQTVRLNYTSTDAKDYQLNLIDTPGHVD 90 (606)
Q Consensus 12 RN~~IiaHvDhGKTTL~d~lL~~tg~i~~~~-~~~~vlD~~~~EreRGITIka~~~~~~~~~~~~~~y~iNlIDTPGH~D 90 (606)
.||+||||||||||||+++|++..+....+. .....+|++++||||||||.++.+.+ +|.++.+|+||||||.|
T Consensus 3 ~Ni~iiGHVDhGKTTL~~~l~~~~~~~~~~~~~~~~~~D~~~~EreRGiTI~~~~~~~-----~~~~~~~~~IDtPGH~d 77 (195)
T cd01884 3 VNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEY-----ETANRHYAHVDCPGHAD 77 (195)
T ss_pred EEEEEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCHHCCCCHHHHCCCCCCCCEEEEE-----ECCCEEEEECCCCCHHH
T ss_conf 7999996058869899999999886634444112001005466650588614418999-----60881699626896077
Q ss_pred HHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCC-EEEEECCCCCCCCC--CCCHHHHHHHHH---HHHHHH
Q ss_conf 279999999730268999986878865589999999970996-79983267887532--113388877555---322321
Q gi|254780321|r 91 FTYEVSRSLSACEGSLLVVDATQGVEAQTLANVYQAIDNNHE-IITVLNKADLPSAD--PDRVKKQIEETI---GISTED 164 (606)
Q Consensus 91 F~~EV~r~l~a~dgaiLvVdA~~Gvq~QT~~~~~~A~~~~l~-~I~viNKiD~~~A~--~e~v~~ei~~~~---g~~~~~ 164 (606)
|..++.|+++.+|+|||||||.+|+|+||++|+.+|...|++ +|++|||||+++.+ ++.+..|+.+++ |++.++
T Consensus 78 F~~~~i~g~~~~D~aiLVVdA~eGv~~QT~eh~~la~~lgi~~iiV~iNK~D~~~~~~~~~~v~~ei~~~l~~~g~~~~~ 157 (195)
T cd01884 78 YIKNMITGAAQMDGAILVVSATDGPMPQTREHLLLARQVGVPYIVVFLNKADMVDDEELLELVEMEVRELLSKYGFDGDN 157 (195)
T ss_pred HHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 88899863511362689985277874789999999998099962799968778987899999999999999842999556
Q ss_pred --HHHHHHHCCC----------CCCHHHHHHHHHHHCC
Q ss_conf --0001110022----------3200678776321000
Q gi|254780321|r 165 --ALLVSAKTGE----------GIPLLLERIVQQLPSP 190 (606)
Q Consensus 165 --ii~vSAktG~----------GV~~LLd~Iv~~iP~P 190 (606)
++|+||++|. |+.+|||+|++++|+|
T Consensus 158 ~p~ip~Sa~~g~~~~~~~~~~~~i~~Lldai~~~iP~P 195 (195)
T cd01884 158 TPIVRGSALKALEGDDPNKWVKKILELLDALDSYIPTP 195 (195)
T ss_pred CEEEEEEHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCC
T ss_conf 82999773875357888755369999999999648998
No 41
>PRK12735 elongation factor Tu; Reviewed
Probab=100.00 E-value=0 Score=343.45 Aligned_cols=277 Identities=23% Similarity=0.348 Sum_probs=208.2
Q ss_pred CCCCCCCHH-HCEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCC-EEECCCHHHHHHCCEEEEEEEEEEEECCCCCEE
Q ss_conf 988899852-531799980138987788999999829805444431-130586779871950523279999743788438
Q gi|254780321|r 1 MQKKPTPLS-RIRNFSIVAHIDHGKSTLADRFIQHCRGLTEREMSS-QVLDNMDIERERGITIKAQTVRLNYTSTDAKDY 78 (606)
Q Consensus 1 ~~~~~~p~~-~IRN~~IiaHvDhGKTTL~d~lL~~tg~i~~~~~~~-~vlD~~~~EreRGITIka~~~~~~~~~~~~~~y 78 (606)
|.|+...-+ .-=|++++||||||||||+.+|+...+....+.... .-+|..++||+|||||.. .+..++++++
T Consensus 1 ~~~~~~~~~kp~ini~~~GHVD~GKSTL~g~Lt~~~~~~~~~~~~~~~~~D~~~eEr~rGiTid~-----~~~~fet~~~ 75 (396)
T PRK12735 1 MAKEKFERTKPHVNVGTIGHVDHGKTTLTAAITTVLAKKGGGEAKAYDQIDNAPEEKARGITINT-----SHVEYETANR 75 (396)
T ss_pred CCCCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHCCCHHHHCCCEEEEE-----EEEEEECCCE
T ss_conf 97233278998349999942688589899998614545246431221221166567437737985-----6999973980
Q ss_pred EEEEEECCCCCHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCC-EEEEECCCCCCC-CC-CCCHHHHHH
Q ss_conf 999961787300279999999730268999986878865589999999970996-799832678875-32-113388877
Q gi|254780321|r 79 QLNLIDTPGHVDFTYEVSRSLSACEGSLLVVDATQGVEAQTLANVYQAIDNNHE-IITVLNKADLPS-AD-PDRVKKQIE 155 (606)
Q Consensus 79 ~iNlIDTPGH~DF~~EV~r~l~a~dgaiLvVdA~~Gvq~QT~~~~~~A~~~~l~-~I~viNKiD~~~-A~-~e~v~~ei~ 155 (606)
.+++||+|||.||.--.....+.+|.|||||||.+|+|+||++|+.++...|++ +|++|||||+.+ .+ .+.+..++.
T Consensus 76 ~~~~iD~PGHe~fiknMI~Ga~~aD~alLVV~A~~G~~~QTrEHl~l~~~lgv~~~iV~vnK~D~v~~~~~~e~v~~~i~ 155 (396)
T PRK12735 76 HYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFLNKCDMVDDEELLELVEMEVR 155 (396)
T ss_pred EEEEEECCCHHHHHHHHHHCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 59998368668877666410042567999998687875316999999998399858999987588881999999999999
Q ss_pred HHH---HHHHHH--HHHHHHHCCC----------CCCHHHHHHHHHHHCCCCHHHHHCCCCCCCCCEEECCCCCEEEEEE
Q ss_conf 555---322321--0001110022----------3200678776321000111122012331012101147572599998
Q gi|254780321|r 156 ETI---GISTED--ALLVSAKTGE----------GIPLLLERIVQQLPSPTSPEGANAPLKALLIDSWYNSYLGVMVLVR 220 (606)
Q Consensus 156 ~~~---g~~~~~--ii~vSAktG~----------GV~~LLd~Iv~~iP~P~~~~~~~~Pl~alVfds~~D~~~G~I~~~R 220 (606)
+++ +++.++ ++++||..+. ++.+|++++-+++|.|. ++.++||++.|-+.+..+..|.|.+|+
T Consensus 156 ~~l~~~~f~~~~~piv~~S~~~~~~~~~~~~~~~~i~~Ll~~l~~~~~~p~--r~~~~pfrl~Id~vf~v~G~GtVVtGt 233 (396)
T PRK12735 156 ELLSKYDFPGDDTPIIRGSALKALEGDAEWIGEAKILELMEALDSYIPTPE--RAIDKPFLMPIEDVFSISGRGTVVTGR 233 (396)
T ss_pred HHHHHCCCCCCCCCEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCC--CCCCCCEEEEEEEEEEECCCCEEEEEE
T ss_conf 999855999664779996733722588743444779999999885267877--777886599976477767971599989
Q ss_pred ECCCCCCCCCEEEEEC--CCCCCCCCCCCCCCCCEEEEHHCCCCC-HHHHHHCCCCCCCCCCCCEECCCCC
Q ss_conf 1698735584588733--556421012223355412401012471-2332201100244445420004667
Q gi|254780321|r 221 IINGQLTKGQSIRLMG--TNAKYQVERIGILTPKMIDIEALYPGE-IGVMIASIKEVSHTRVGDTITDDSS 288 (606)
Q Consensus 221 V~sG~lk~Gd~I~~~~--~g~~~~v~~ig~~~~~~~~v~~l~aGd-VG~ii~gik~l~~~~vGDTl~~~~~ 288 (606)
|.+|+++.||++.++. .+.+.++..+ ..+..+++++.||| ++.-+.|+ +.++++.||.||.+..
T Consensus 234 V~sG~i~~Gd~v~i~~~~~~~~~~V~sI---q~~~~~v~~a~aG~~v~l~L~gi-~~~~i~rG~VL~~p~~ 300 (396)
T PRK12735 234 VERGIVKVGDEVEIVGIKDTQKTTVTGV---EMFRKLLDEGQAGDNVGVLLRGT-KREDVERGQVLAKPGS 300 (396)
T ss_pred EEEEEECCCCEEEEEECCCCCEEEEEEE---EECCCCCCEECCCCEEEEEECCC-CHHHCCCEEEEECCCC
T ss_conf 8121562799899972699846999999---98670802714887899994799-8898562679966998
No 42
>TIGR00483 EF-1_alpha translation elongation factor EF-1, subunit alpha; InterPro: IPR004539 Translation elongation factors are responsible for two main processes during protein synthesis on the ribosome , , . EF1A (or EF-Tu) is responsible for the selection and binding of the cognate aminoacyl-tRNA to the A-site (acceptor site) of the ribosome. EF2 (or EF-G) is responsible for the translocation of the peptidyl-tRNA from the A-site to the P-site (peptidyl-tRNA site) of the ribosome, thereby freeing the A-site for the next aminoacyl-tRNA to bind. Elongation factors are responsible for achieving accuracy of translation and both EF1A and EF2 are remarkably conserved throughout evolution. EF1A (also known as EF-1alpha or EF-Tu) is a G-protein. It forms a ternary complex of EF1A-GTP-aminoacyltRNA. The binding of aminoacyl-tRNA stimulates GTP hydrolysis by EF1A, causing a conformational change in EF1A that causes EF1A-GDP to detach from the ribosome, leaving the aminoacyl-tRNA attached at the A-site. Only the cognate aminoacyl-tRNA can induce the required conformational change in EF1A through its tight anticodon-codon binding , . EF1A-GDP is returned to its active state, EF1A-GTP, through the action of another elongation factor, EF1B (also known as EF-Ts or EF-1beta/gamma/delta). This entry represents EF1A proteins found primarily in eukaryotic (eEF1A) and archaeal (aEF1A) organisms, these proteins being more closely related to one another than to EF1A (or EF-Tu) found in bacteria (IPR004541 from INTERPRO). More information about these proteins can be found at Protein of the Month: Elongation Factors . ; GO: 0003746 translation elongation factor activity, 0005525 GTP binding, 0006414 translational elongation, 0005737 cytoplasm.
Probab=100.00 E-value=0 Score=350.80 Aligned_cols=320 Identities=27% Similarity=0.434 Sum_probs=246.7
Q ss_pred CEEEEEECCCCCCHHHHHHHHHHHCCCCCCC-------CCC---------CEEECCCHHHHHHCCEEEEEEEEEEEECCC
Q ss_conf 3179998013898778899999982980544-------443---------113058677987195052327999974378
Q gi|254780321|r 11 IRNFSIVAHIDHGKSTLADRFIQHCRGLTER-------EMS---------SQVLDNMDIERERGITIKAQTVRLNYTSTD 74 (606)
Q Consensus 11 IRN~~IiaHvDhGKTTL~d~lL~~tg~i~~~-------~~~---------~~vlD~~~~EreRGITIka~~~~~~~~~~~ 74 (606)
.=|+++|||||||||||+.+|||.||.|.++ |+. ..|||.+..|||||||| .+.+.-++
T Consensus 7 ~~Nv~~IGHVD~GKST~~G~Lly~~G~I~~~~~eK~~kEa~e~GK~~F~fa~V~D~Lk~ERERGvTI-----D~A~~KFe 81 (445)
T TIGR00483 7 HINVAFIGHVDHGKSTLVGRLLYKAGAIDEQLLEKLKKEAQEKGKASFEFAWVMDRLKEERERGVTI-----DVAHKKFE 81 (445)
T ss_pred EEEEEEEEEEECCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCHH-----HHHHHHCC
T ss_conf 2448998254088502667777542896589999998757551873036765431100000156224-----33445417
Q ss_pred CCEEEEEEEECCCCCHHHHHHHHHHHHCCEEEEEEECCCC-------CCHHHHHHHHHHHHCCCC-EEEEECCCCCCCCC
Q ss_conf 8438999961787300279999999730268999986878-------865589999999970996-79983267887532
Q gi|254780321|r 75 AKDYQLNLIDTPGHVDFTYEVSRSLSACEGSLLVVDATQG-------VEAQTLANVYQAIDNNHE-IITVLNKADLPSAD 146 (606)
Q Consensus 75 ~~~y~iNlIDTPGH~DF~~EV~r~l~a~dgaiLvVdA~~G-------vq~QT~~~~~~A~~~~l~-~I~viNKiD~~~A~ 146 (606)
..+|.+++||||||-||.--..-.-+-+|+|+||||..++ +++||++|..||.-.|+. +|+.|||||..+.|
T Consensus 82 T~KY~~TivDcPGHRDFiKNMITGaSQADaAvLv~~v~~~~~~ag~~~~pQTrEH~~La~TLGi~QliVAiNKMD~V~yd 161 (445)
T TIGR00483 82 TDKYEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVDDGEFEAGISVQPQTREHVFLARTLGINQLIVAINKMDSVNYD 161 (445)
T ss_pred CCCEEEEEEECCCCCHHHHHCCCCCCCCCEEEEEEECCCCCCCCCEEECCCCHHHHHHHHHHCCEEEEEEECCCCCEECC
T ss_conf 88516999846987013431126675124279999525441024012178605778887750320453331024610027
Q ss_pred ---CCCHHHHHHH-H---HHHHHHH--HHHHHHHCCCCC------------------------CHHHHHHHHHHHCCCCH
Q ss_conf ---1133888775-5---5322321--000111002232------------------------00678776321000111
Q gi|254780321|r 147 ---PDRVKKQIEE-T---IGISTED--ALLVSAKTGEGI------------------------PLLLERIVQQLPSPTSP 193 (606)
Q Consensus 147 ---~e~v~~ei~~-~---~g~~~~~--ii~vSAktG~GV------------------------~~LLd~Iv~~iP~P~~~ 193 (606)
++...+++.+ + +|..+++ .+|+||..|.|| ..||||+ +.+-+|.
T Consensus 162 ~~~f~~~~~~~s~~l~K~vGY~p~~v~FiP~s~~~GDN~~~~s~~~PWYkgwe~e~~agvv~G~TL~EA~-D~~~~P~-- 238 (445)
T TIGR00483 162 EEEFEALKKEVSEQLLKKVGYKPDEVPFIPISAFEGDNVIKKSENTPWYKGWEKETKAGVVKGKTLLEAL-DALEPPE-- 238 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCHHHHHCCCCCCCCCCCCCCCEEECCCHHHHHH-HHHCCCC--
T ss_conf 7899999999999899874887561232540354676134330388852552200023022184589887-3104786--
Q ss_pred HHHHCCCCCCCCCEEECCCCCEEEEEEECCCCCCCCCEEEEECCCCCCCCCCCCCCCCCEEEEHHCCCCC-HHHHHHCCC
Q ss_conf 1220123310121011475725999981698735584588733556421012223355412401012471-233220110
Q gi|254780321|r 194 EGANAPLKALLIDSWYNSYLGVMVLVRIINGQLTKGQSIRLMGTNAKYQVERIGILTPKMIDIEALYPGE-IGVMIASIK 272 (606)
Q Consensus 194 ~~~~~Pl~alVfds~~D~~~G~I~~~RV~sG~lk~Gd~I~~~~~g~~~~v~~ig~~~~~~~~v~~l~aGd-VG~ii~gik 272 (606)
.-.|.|||..|-|.+.-...|.|-.|||.+|.|++|+.|.+-+.|-+-+|+.| .++..+++++.+|| ||+-+.|+
T Consensus 239 kp~d~PLRiPiQDVY~I~GvGTVPVGRVEtGvl~~G~~V~F~PAGVsgEVKSi---EMHHE~i~~a~PGDNiGFNVrgV- 314 (445)
T TIGR00483 239 KPVDKPLRIPIQDVYSITGVGTVPVGRVETGVLKPGDKVVFEPAGVSGEVKSI---EMHHEQIEQAEPGDNIGFNVRGV- 314 (445)
T ss_pred CCCCCCCCCCCCCEEEECCEEECCCCCEECCEEECCCEEEECCCCCCCCEEEE---EECCCCCCCCCCCCCCCEEECCC-
T ss_conf 43467730553003575336622346020242644887896378843121367---61134366777787412200155-
Q ss_pred CCCCCCCCCEECCCCC-CCCCCCCCCCC-----CCC-EEEEEECCCCHHHHHHHHHHHHHH-HHHCCCC-CCCCCCCCCC
Q ss_conf 0244445420004667-85323645522-----221-266421267702457889999888-6411221-1125676000
Q gi|254780321|r 273 EVSHTRVGDTITDDSS-PTTSALPGFKP-----IQP-VVFCGLFPVDATQFENLRTAINKL-RLNDASF-SFELENSTAL 343 (606)
Q Consensus 273 ~l~~~~vGDTl~~~~~-p~~~~Lp~~~~-----~~P-~v~~~i~p~~~~d~~~L~~aL~kL-~~~D~sl-~~e~Ets~aL 343 (606)
..++++.||.-.+++| |-. ....|.- -+| .+++|.-|+=..--+++.=....| ...||.- ++..|+-+.|
T Consensus 315 s~kdIrRGdV~G~~~NdPP~-v~~~F~A~~vVL~HP~~ItvGYtPV~~~HTA~~AC~F~EL~~K~d~rtG~~~Ee~P~FL 393 (445)
T TIGR00483 315 SKKDIRRGDVAGHPDNDPPK-VAKEFTAQIVVLQHPGAITVGYTPVLHAHTAQIACRFVELLKKLDPRTGQVLEENPQFL 393 (445)
T ss_pred CCCCCCCCCCCCCCCCCCCC-CCCCCCCEEEEECCCCEEEECCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
T ss_conf 60220014303788875872-10144127999728976773565630143113333168888550733585014787512
No 43
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=100.00 E-value=0 Score=342.08 Aligned_cols=270 Identities=24% Similarity=0.308 Sum_probs=200.1
Q ss_pred CCCCCCCHHHCEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHCCEEEEEEEEEEEEC---CCC--
Q ss_conf 988899852531799980138987788999999829805444431130586779871950523279999743---788--
Q gi|254780321|r 1 MQKKPTPLSRIRNFSIVAHIDHGKSTLADRFIQHCRGLTEREMSSQVLDNMDIERERGITIKAQTVRLNYTS---TDA-- 75 (606)
Q Consensus 1 ~~~~~~p~~~IRN~~IiaHvDhGKTTL~d~lL~~tg~i~~~~~~~~vlD~~~~EreRGITIka~~~~~~~~~---~~~-- 75 (606)
|.....| -=|++++||||||||||+.+| ||.. +|..++|++|||||+..-+.+.+.. .++
T Consensus 1 ~~~~~~p---~vNIgtiGHVDHGKTTLv~aL---Tg~~---------tdr~~eE~~RGiTI~LG~a~~~~~~~~~~~~~~ 65 (410)
T PRK04000 1 MWEFVQP---EVNIGMVGHVDHGKTTLVQAL---TGVW---------TDTHSEELKRGITIRLGYADATIYKCPNCEGPE 65 (410)
T ss_pred CCCCCCC---CCEEEEEEEECCCHHHHHHHH---HCCC---------CCCCHHHHHCCCCCCCCCCCEEHHCCCCCCCCC
T ss_conf 9877899---526999965178699999887---3975---------423887886488121051010012054555444
Q ss_pred ----------------CEEEEEEEECCCCCHHHHHHHHHHHHCCEEEEEEECCCCC-CHHHHHHHHHHHHCCCC-EEEEE
Q ss_conf ----------------4389999617873002799999997302689999868788-65589999999970996-79983
Q gi|254780321|r 76 ----------------KDYQLNLIDTPGHVDFTYEVSRSLSACEGSLLVVDATQGV-EAQTLANVYQAIDNNHE-IITVL 137 (606)
Q Consensus 76 ----------------~~y~iNlIDTPGH~DF~~EV~r~l~a~dgaiLvVdA~~Gv-q~QT~~~~~~A~~~~l~-~I~vi 137 (606)
...++++||+|||.||........+.+|+|||||||.+|+ ||||++|+.++...|++ +|+++
T Consensus 66 ~~~~~~~~~~~~~~~~~~r~is~VD~PGHe~fi~nMi~Gas~~D~alLVVaA~eG~p~pQT~EHl~i~~~lgi~~~iV~l 145 (410)
T PRK04000 66 AYTTEPTCPKCGSETELLRRVSFVDAPGHETLMATMLSGAALMDGAVLVIAANEPCPQPQTKEHLMALDIIGIKNIVIVQ 145 (410)
T ss_pred CEEEECCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCHHHHHHHHHHCCCCCEEEEE
T ss_conf 13530233444555443316999979887999999984021266799998657787677149999999980998379999
Q ss_pred CCCCCCCCC-CCCHHHHHHHHH---HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCHHHHHCCCCCCCCCEE-----
Q ss_conf 267887532-113388877555---32232100011100223200678776321000111122012331012101-----
Q gi|254780321|r 138 NKADLPSAD-PDRVKKQIEETI---GISTEDALLVSAKTGEGIPLLLERIVQQLPSPTSPEGANAPLKALLIDSW----- 208 (606)
Q Consensus 138 NKiD~~~A~-~e~v~~ei~~~~---g~~~~~ii~vSAktG~GV~~LLd~Iv~~iP~P~~~~~~~~Pl~alVfds~----- 208 (606)
||||+.+.+ .+.+.+||.+++ .++...++++||.+|.|++.|+++|.+++|.|. ++.++||++.|-.++
T Consensus 146 nK~Dlv~~e~~~~~~~ei~~~l~g~~~~~~piipvSa~~g~~i~~L~~~l~~~~~~p~--r~~~~~f~m~Vdr~F~i~g~ 223 (410)
T PRK04000 146 NKIDLVSKEKALENYEQIKEFVKGTVAENAPIIPVSALHGVNIDALIEAIEEEIPTPE--RDLDKPPLMYVARSFDVNKP 223 (410)
T ss_pred ECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCHHHHHHHHHCCCCC--CCCCCCCEEEEEEEEEECCC
T ss_conf 6256789899999999999987067656899999647778894089998986277877--78889944899888850579
Q ss_pred ---ECCCCCEEEEEEECCCCCCCCCEEEEECCCCCCC---------CCCCCCCCCCEEEEHHCCCCC-HHHHHH---CCC
Q ss_conf ---1475725999981698735584588733556421---------012223355412401012471-233220---110
Q gi|254780321|r 209 ---YNSYLGVMVLVRIINGQLTKGQSIRLMGTNAKYQ---------VERIGILTPKMIDIEALYPGE-IGVMIA---SIK 272 (606)
Q Consensus 209 ---~D~~~G~I~~~RV~sG~lk~Gd~I~~~~~g~~~~---------v~~ig~~~~~~~~v~~l~aGd-VG~ii~---gik 272 (606)
++.++|.|+.|+|.+|+++.||+|.+.+..+..+ ..++--+..+..+++++.||+ ||.-+. +++
T Consensus 224 Gt~~~~~~G~VvtGtv~~G~ik~GD~vei~Pg~~~~~~~~~~~~pi~t~V~si~~~~~~~~~a~aG~~vai~~~ld~~i~ 303 (410)
T PRK04000 224 GTPPEKLKGGVIGGSLIQGVLKVGDEIEIRPGIKVEKGGKTKWEPITTKITSLRAGGEKVEEARPGGLVGVGTKLDPALT 303 (410)
T ss_pred CCCCCCCCCCEEEEEEEEEEEECCCEEEEECCCCCCCCCCCCCCCCEEEEEEEEECCEEHHEECCCCEEEECCCCCCCCC
T ss_conf 86553564417888997627842998999447433456653112212699899747839110136765852233455533
Q ss_pred CCCCCCCCCEECCCCC
Q ss_conf 0244445420004667
Q gi|254780321|r 273 EVSHTRVGDTITDDSS 288 (606)
Q Consensus 273 ~l~~~~vGDTl~~~~~ 288 (606)
-.|...|+.++.+..
T Consensus 304 -r~D~~rG~Vl~~pg~ 318 (410)
T PRK04000 304 -KADALAGSVAGKPGT 318 (410)
T ss_pred -HHHHHCCCEEECCCC
T ss_conf -557415655435997
No 44
>CHL00071 tufA elongation factor Tu
Probab=100.00 E-value=0 Score=339.37 Aligned_cols=267 Identities=21% Similarity=0.338 Sum_probs=206.3
Q ss_pred CEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCC-EEECCCHHHHHHCCEEEEEEEEEEEECCCCCEEEEEEEECCCCC
Q ss_conf 31799980138987788999999829805444431-13058677987195052327999974378843899996178730
Q gi|254780321|r 11 IRNFSIVAHIDHGKSTLADRFIQHCRGLTEREMSS-QVLDNMDIERERGITIKAQTVRLNYTSTDAKDYQLNLIDTPGHV 89 (606)
Q Consensus 11 IRN~~IiaHvDhGKTTL~d~lL~~tg~i~~~~~~~-~vlD~~~~EreRGITIka~~~~~~~~~~~~~~y~iNlIDTPGH~ 89 (606)
-=|++++||||||||||+.+|++..+...++.+.. +-+|..++||+||||| .+.+..+++.++.+++||+|||.
T Consensus 12 ~vni~~~GHVD~GKSTL~g~L~~~~~~~~~~~~~~~~~~D~~~eEr~rGiTi-----d~~~~~~et~~~~~~~iD~PGH~ 86 (409)
T CHL00071 12 HVNIGTIGHVDHGKTTLTAAITMTLAANGGAKGKKYDEIDSAPEEKARGITI-----NTAHVEYETENRHYAHVDCPGHA 86 (409)
T ss_pred EEEEEEECCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHCCCCHHHHHCCCEE-----EECEEEEECCCEEEEEEECCCHH
T ss_conf 6999999545883999999986453004513343155323797687369448-----80248996287599998679678
Q ss_pred HHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCC-EEEEECCCCCCC-CC-CCCHHHHHHHHH---HHHHH
Q ss_conf 0279999999730268999986878865589999999970996-799832678875-32-113388877555---32232
Q gi|254780321|r 90 DFTYEVSRSLSACEGSLLVVDATQGVEAQTLANVYQAIDNNHE-IITVLNKADLPS-AD-PDRVKKQIEETI---GISTE 163 (606)
Q Consensus 90 DF~~EV~r~l~a~dgaiLvVdA~~Gvq~QT~~~~~~A~~~~l~-~I~viNKiD~~~-A~-~e~v~~ei~~~~---g~~~~ 163 (606)
||.-...+..+.+|.|+|||||.+|+++||++|+.+|...|++ +|++|||||+.+ .+ .+.+..++.+++ ++..+
T Consensus 87 ~fv~nmi~Gas~aD~alLVV~A~~G~~~QTkEHl~l~~~lgV~~~IVavnKmD~v~~~~~~e~i~~~i~~~l~~~g~~~~ 166 (409)
T CHL00071 87 DYVKNMITGAAQMDGAILVVSAADGPMPQTKEHILLAKQVGVPNIVVFLNKEDQVDDEELLELVELEVRELLDKYDFPGD 166 (409)
T ss_pred HHHHHHHHHHCCCCCEEEEEECCCCCCCCHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 99999875230158128999868788500499999999739993655555679854899999999999999997399845
Q ss_pred H--HHHHHHHCCC------------------CCCHHHHHHHHHHHCCCCHHHHHCCCCCCCCCEEECCCCCEEEEEEECC
Q ss_conf 1--0001110022------------------3200678776321000111122012331012101147572599998169
Q gi|254780321|r 164 D--ALLVSAKTGE------------------GIPLLLERIVQQLPSPTSPEGANAPLKALLIDSWYNSYLGVMVLVRIIN 223 (606)
Q Consensus 164 ~--ii~vSAktG~------------------GV~~LLd~Iv~~iP~P~~~~~~~~Pl~alVfds~~D~~~G~I~~~RV~s 223 (606)
+ ++++||..|. +...|++++-.++|.|. ++.++||++.|-+++.-+.+|.|+.|+|.+
T Consensus 167 ~i~~vp~sa~~~~~~~~~~~~~~~~~~~w~~~~~~Ll~~l~~~~p~~~--r~~~~p~r~~Id~vf~v~G~GtVv~G~v~s 244 (409)
T CHL00071 167 EIPIVAGSALLALEALIENPKIKRGENKWVDKIYNLMDAVDSYIPTPE--RDTDKPFLMAIEDVFSITGRGTVATGRIER 244 (409)
T ss_pred CCEEEECCHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCC--CCCCCCEEEEECCEEECCCCEEEEEEEEEE
T ss_conf 560896521332343125875455656124479999998872377888--876776064422147538978899999914
Q ss_pred CCCCCCCEEEEECCC--CCCCCCCCCCCCCCEEEEHHCCCCC-HHHHHHCCCCCCCCCCCCEECCCCC
Q ss_conf 873558458873355--6421012223355412401012471-2332201100244445420004667
Q gi|254780321|r 224 GQLTKGQSIRLMGTN--AKYQVERIGILTPKMIDIEALYPGE-IGVMIASIKEVSHTRVGDTITDDSS 288 (606)
Q Consensus 224 G~lk~Gd~I~~~~~g--~~~~v~~ig~~~~~~~~v~~l~aGd-VG~ii~gik~l~~~~vGDTl~~~~~ 288 (606)
|+++.||++.+++.+ +..++.. ...+..+++++.||| ++.-+.|+ +..+++.||.||++..
T Consensus 245 G~v~~Gd~v~i~~~~~~~~~~Vks---I~~~~~~~~~a~aG~~v~l~L~gi-~~~~I~rG~VL~~p~~ 308 (409)
T CHL00071 245 GTVKVGDTVEIVGLRETRTTTVTG---LEMFQKTLDEGLAGDNVGILLRGI-QKEDIERGMVLAKPGT 308 (409)
T ss_pred CCCCCCCEEEEEECCCCCEEEEEE---EEECCCCCCEECCCCEEEEEECCC-CHHHCCCEEEEECCCC
T ss_conf 563499989999769986079999---998895988887998899997599-8788774689968999
No 45
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=100.00 E-value=0 Score=339.70 Aligned_cols=172 Identities=27% Similarity=0.399 Sum_probs=147.0
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHCCEEEEEEEEEEE---------ECCCCCEEEEEEE
Q ss_conf 7999801389877889999998298054444311305867798719505232799997---------4378843899996
Q gi|254780321|r 13 NFSIVAHIDHGKSTLADRFIQHCRGLTEREMSSQVLDNMDIERERGITIKAQTVRLNY---------TSTDAKDYQLNLI 83 (606)
Q Consensus 13 N~~IiaHvDhGKTTL~d~lL~~tg~i~~~~~~~~vlD~~~~EreRGITIka~~~~~~~---------~~~~~~~y~iNlI 83 (606)
||||+||||||||||+++|++..++ ..+|++++||||||||+....++.. ...+|++|++|||
T Consensus 2 NV~iiGHVDhGKTTL~~~L~~~~~~--------~~~D~~~eE~eRGITi~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~I 73 (192)
T cd01889 2 NVGVLGHVDSGKTSLAKALSEIAST--------AAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLV 73 (192)
T ss_pred EEEEEEECCCCHHHHHHHHHHHCCC--------HHHHCCHHHHHCCCCEEEEEEEEEECCCCCCCCCCCCCCCCEEEEEE
T ss_conf 8999976178999999999833350--------12213588997797167100137851442211232346774589998
Q ss_pred ECCCCCHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCC-----CCCHHHHHHHHH
Q ss_conf 178730027999999973026899998687886558999999997099679983267887532-----113388877555
Q gi|254780321|r 84 DTPGHVDFTYEVSRSLSACEGSLLVVDATQGVEAQTLANVYQAIDNNHEIITVLNKADLPSAD-----PDRVKKQIEETI 158 (606)
Q Consensus 84 DTPGH~DF~~EV~r~l~a~dgaiLvVdA~~Gvq~QT~~~~~~A~~~~l~~I~viNKiD~~~A~-----~e~v~~ei~~~~ 158 (606)
|||||.||..++.++++++|+|+|||||.+|+|+||++||++|...++++|+|+||||+.+.+ ++++.+++.+++
T Consensus 74 DtPGH~df~~~~~~g~~~~D~ailvVda~~G~~~QT~eh~~~~~~~~~~~iv~iNK~D~v~~~~~~~~~~~i~~~l~~~l 153 (192)
T cd01889 74 DCPGHASLIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLVIGEILCKKLIVVLNKIDLIPEEERERKIEKMKKKLQKTL 153 (192)
T ss_pred ECCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 77983889988888874326527999878888789999999999858997999974127881577999999999999998
Q ss_pred ---HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCC
Q ss_conf ---3223210001110022320067877632100011
Q gi|254780321|r 159 ---GISTEDALLVSAKTGEGIPLLLERIVQQLPSPTS 192 (606)
Q Consensus 159 ---g~~~~~ii~vSAktG~GV~~LLd~Iv~~iP~P~~ 192 (606)
+++...++|+||++|.||++|+++|.+.+|+|..
T Consensus 154 ~~~~~~~~~iipiSA~~G~gi~eL~~~i~~lip~p~~ 190 (192)
T cd01889 154 EKTRFKNSPIIPVSAKPGGGEAELGKDLNNLIVLPLI 190 (192)
T ss_pred HHCCCCCCEEEEEECCCCCCHHHHHHHHHHHCCCCCC
T ss_conf 6538999849995789884989999888761899963
No 46
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=100.00 E-value=0 Score=328.70 Aligned_cols=268 Identities=22% Similarity=0.330 Sum_probs=213.5
Q ss_pred HHCEEEEEECCCCCCHHHHHHHHHHHCCCCCCCC------------CC------CEEECCCHHHHHHCCEEEEEEEEEEE
Q ss_conf 2531799980138987788999999829805444------------43------11305867798719505232799997
Q gi|254780321|r 9 SRIRNFSIVAHIDHGKSTLADRFIQHCRGLTERE------------MS------SQVLDNMDIERERGITIKAQTVRLNY 70 (606)
Q Consensus 9 ~~IRN~~IiaHvDhGKTTL~d~lL~~tg~i~~~~------------~~------~~vlD~~~~EreRGITIka~~~~~~~ 70 (606)
+.+-||.++||||||||||..|||+.||.+.+.. .. ..+||.++.|||+|||| .+.|
T Consensus 5 k~~l~~~~~G~VD~GKSTliGrlL~dt~~i~~d~~~~~~~~s~~~g~~~~~~~~a~l~D~l~~EreqGiTI-----Dva~ 79 (613)
T PRK05506 5 KTLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITI-----DVAY 79 (613)
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHCCCEE-----EEEE
T ss_conf 76258999936679788898899998199678999999999998189888603544214888898559716-----8567
Q ss_pred ECCCCCEEEEEEEECCCCCHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCC-EEEEECCCCCCCCC---
Q ss_conf 43788438999961787300279999999730268999986878865589999999970996-79983267887532---
Q gi|254780321|r 71 TSTDAKDYQLNLIDTPGHVDFTYEVSRSLSACEGSLLVVDATQGVEAQTLANVYQAIDNNHE-IITVLNKADLPSAD--- 146 (606)
Q Consensus 71 ~~~~~~~y~iNlIDTPGH~DF~~EV~r~l~a~dgaiLvVdA~~Gvq~QT~~~~~~A~~~~l~-~I~viNKiD~~~A~--- 146 (606)
.++.++++++.++|||||.+|.--...+-+-+|.|||||||..|+..||+.|.+++...|++ +|++|||||+.+-+
T Consensus 80 ~~F~t~~r~~~i~DaPGH~~y~rNMitgAs~ad~AilliDa~~G~~~QTrrH~~i~~llGI~~iivaVNKMDlV~y~~~~ 159 (613)
T PRK05506 80 RYFSTPKRKFIVADTPGHEQYTRNMATGASTADLAIILVDARKGVLTQTRRHSFIASLLGIRHIVLAVNKMDLVDYDQEV 159 (613)
T ss_pred EEEECCCEEEEEECCCCHHHHHHHHHHHHHHCCEEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCHHHH
T ss_conf 78843870599942896798998999878653879999988879515518999999872987599998520124781999
Q ss_pred CCCHHHHHHHH---HHHHHHHHHHHHHHCCCCC------------CHHHHHHHHHHHCCCCHHHHHCCCCCCCCCEEECC
Q ss_conf 11338887755---5322321000111002232------------00678776321000111122012331012101147
Q gi|254780321|r 147 PDRVKKQIEET---IGISTEDALLVSAKTGEGI------------PLLLERIVQQLPSPTSPEGANAPLKALLIDSWYNS 211 (606)
Q Consensus 147 ~e~v~~ei~~~---~g~~~~~ii~vSAktG~GV------------~~LLd~Iv~~iP~P~~~~~~~~Pl~alVfds~~D~ 211 (606)
++++.+++.++ +|+..-.++|+||+.|.|| ..||+.+ +.++.+.. ..+.|||+.|-...-..
T Consensus 160 f~~I~~~~~~~~~~l~~~~~~~IPISAl~GDNVv~~S~~m~WY~GptLle~L-e~~~~~~~--~~~~~fR~PVQ~V~Rp~ 236 (613)
T PRK05506 160 FDRIVADYLAFAAKLGLTDVTFIPISALKGDNVVTRSARTPWYEGPSLLEHL-ETVEIAGD--RNLKDFRFPVQYVNRPN 236 (613)
T ss_pred HHHHHHHHHHHHHHCCCCCCEEEECCCCCCCEEEECCCCCCCCCCCCHHHHH-HCCCCCCC--CCCCCCEEEEEEEECCC
T ss_conf 9999999999996579988759967357487476788788666786589997-37787866--44567121117874478
Q ss_pred CCCEEEEEEECCCCCCCCCEEEEECCCCCCCCCCCCCCCCCEEEEHHCCCCCHHHHHHCCCCCCCCCCCCEECCCCCC
Q ss_conf 572599998169873558458873355642101222335541240101247123322011002444454200046678
Q gi|254780321|r 212 YLGVMVLVRIINGQLTKGQSIRLMGTNAKYQVERIGILTPKMIDIEALYPGEIGVMIASIKEVSHTRVGDTITDDSSP 289 (606)
Q Consensus 212 ~~G~I~~~RV~sG~lk~Gd~I~~~~~g~~~~v~~ig~~~~~~~~v~~l~aGdVG~ii~gik~l~~~~vGDTl~~~~~p 289 (606)
.-.+.-.|||.||++++||+|.+.++|++.+|++|..+. .+++++.+|+- +...+.+--++..||.|+.++++
T Consensus 237 ~dfRgyaGrI~sG~ikvGD~V~vlPSg~~s~Vk~I~~~~---~~~~~A~agqS--VtltL~dEIDISRGDvI~~~~~~ 309 (613)
T PRK05506 237 LDFRGFAGTVASGVVRPGDEVVVLPSGKTSRVKRIVTYD---GELDEAFAGQA--VTLTLADEIDISRGDMLARADNP 309 (613)
T ss_pred CCEEEEEEEECCEEECCCCEEEECCCCCEEEEEEEECCC---CCHHHCCCCCE--EEEEECCCEECCCCCEEECCCCC
T ss_conf 750579999841367269989987899879999998689---97641338980--89997462643798689648998
No 47
>TIGR00475 selB selenocysteine-specific translation elongation factor; InterPro: IPR004535 In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3' or 5' non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation . This family describes the elongation factor SelB, a close homologue of EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This family should not include an equivalent protein for eukaryotes. ; GO: 0003723 RNA binding, 0003746 translation elongation factor activity, 0005525 GTP binding, 0001514 selenocysteine incorporation, 0005737 cytoplasm.
Probab=100.00 E-value=0 Score=330.42 Aligned_cols=257 Identities=26% Similarity=0.364 Sum_probs=212.8
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHH-HHCCEEEEEEEEEEEECCCCCE--EEEEEEECCCCC
Q ss_conf 7999801389877889999998298054444311305867798-7195052327999974378843--899996178730
Q gi|254780321|r 13 NFSIVAHIDHGKSTLADRFIQHCRGLTEREMSSQVLDNMDIER-ERGITIKAQTVRLNYTSTDAKD--YQLNLIDTPGHV 89 (606)
Q Consensus 13 N~~IiaHvDhGKTTL~d~lL~~tg~i~~~~~~~~vlD~~~~Er-eRGITIka~~~~~~~~~~~~~~--y~iNlIDTPGH~ 89 (606)
||+..||||||||||+-+| ||.-+. -.|.+|+|+ .||||| .+.|.+.+..+ +.+.|||.|||.
T Consensus 2 ~~at~GHvDHGKT~L~k~L---Tgi~st------sa~~lPeEkqKRG~tI-----DLGfAy~~l~~~n~~l~~iDvPGHe 67 (627)
T TIGR00475 2 IIATAGHVDHGKTTLLKAL---TGIDST------SADRLPEEKQKRGMTI-----DLGFAYLPLPDINKRLGFIDVPGHE 67 (627)
T ss_pred EEEEECCCCHHHHHHHHHH---CCCCCH------HHHCCCCCCCCCCCEE-----ECCCEECCCCCCCCCCEEEECCCHH
T ss_conf 6873124450479999985---064301------2312774102576624-----6042003677777133478559738
Q ss_pred HHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCC-EEEEECCCCCCC-CCCCCHHHHHHHHH---HHH-HH
Q ss_conf 0279999999730268999986878865589999999970996-799832678875-32113388877555---322-32
Q gi|254780321|r 90 DFTYEVSRSLSACEGSLLVVDATQGVEAQTLANVYQAIDNNHE-IITVLNKADLPS-ADPDRVKKQIEETI---GIS-TE 163 (606)
Q Consensus 90 DF~~EV~r~l~a~dgaiLvVdA~~Gvq~QT~~~~~~A~~~~l~-~I~viNKiD~~~-A~~e~v~~ei~~~~---g~~-~~ 163 (606)
-|..-...++..+|+|||||||.+||++||.+|+..+...++| .|+||||||+.+ +..+++..++..++ .+. ..
T Consensus 68 ~fl~n~lAg~~~i~~alLvVda~eG~~~QT~EHL~vl~~l~~~~~ivvltK~D~~d~~~~~~~E~~~~~~l~~~~~~~n~ 147 (627)
T TIGR00475 68 KFLSNALAGIGGIDAALLVVDADEGVMTQTKEHLAVLKLLGIPELIVVLTKADRVDEEEVKRVEEELKEILEEYEFLKNA 147 (627)
T ss_pred HHHHHHHHHHHHHHHHEEEECCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 99999866756540100354157788532389999999708961999973467456589999999999998764321157
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHCCCCHHHHHCCCCCCCCCEEEC-CCCCEEEEEEECCCCCCCCCEEEEECCCCCCC
Q ss_conf 10001110022320067877632100011112201233101210114-75725999981698735584588733556421
Q gi|254780321|r 164 DALLVSAKTGEGIPLLLERIVQQLPSPTSPEGANAPLKALLIDSWYN-SYLGVMVLVRIINGQLTKGQSIRLMGTNAKYQ 242 (606)
Q Consensus 164 ~ii~vSAktG~GV~~LLd~Iv~~iP~P~~~~~~~~Pl~alVfds~~D-~~~G~I~~~RV~sG~lk~Gd~I~~~~~g~~~~ 242 (606)
+++.+||+||.||++|=+.+-+...+-...++.+.|||+.| |+.|. ...|.|..|.+++|+++.||+|++.+.|+..+
T Consensus 148 ~~~~~SA~tG~Gi~~Lk~~L~~L~e~~~~~r~~~~~lr~~i-D~aF~vKG~GtVvtGt~f~G~VkvGD~~~~~pig~~~r 226 (627)
T TIGR00475 148 KIFKTSAKTGQGIEELKKELKNLLESLDIKRDKQKPLRLAI-DRAFKVKGAGTVVTGTAFSGEVKVGDKLVLEPIGKEVR 226 (627)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCC-CEEEEECCCEEEEEEEEEEEEEEECCEEEEEECCCEEE
T ss_conf 47999134687778999999865777655420156665103-21558703024687557841689888899810583678
Q ss_pred CCCCCCCCCCEEEEHHCCCCC-HHHHHHCCCCCCCCCCCCEECCCC
Q ss_conf 012223355412401012471-233220110024444542000466
Q gi|254780321|r 243 VERIGILTPKMIDIEALYPGE-IGVMIASIKEVSHTRVGDTITDDS 287 (606)
Q Consensus 243 v~~ig~~~~~~~~v~~l~aGd-VG~ii~gik~l~~~~vGDTl~~~~ 287 (606)
|..+ +-+..+++.+.||| ||.-+.+=.+.+.+.-||.||...
T Consensus 227 vk~~---~~~~~~~~~A~AG~RiALnL~~~vd~~~~~RGDWll~~~ 269 (627)
T TIGR00475 227 VKAI---QAQNQDVEKAVAGQRIALNLAADVDKEKLKRGDWLLILK 269 (627)
T ss_pred EEEE---ECCCCCCCEEECHHHHHHHCCCCCCCCCCCCCCEEECCC
T ss_conf 8640---205885221002013654123457612256651220278
No 48
>pfam06421 LepA_C GTP-binding protein LepA C-terminus. This family consists of the C-terminal region of several pro- and eukaryotic GTP-binding LepA proteins.
Probab=100.00 E-value=0 Score=342.98 Aligned_cols=108 Identities=65% Similarity=1.027 Sum_probs=106.9
Q ss_pred ECCCCCCEEEEEEEHHHHHHHHHHHHHHHHHCCCHHHCCCCCEEEECCEEEEEECCCCCCCCEEEEECCCCCCHHHHHHH
Q ss_conf 62882435687421577999999999998740870102002204564788974125642032032301777347877568
Q gi|254780321|r 496 VNNETIDALSILVHRSVSEKRGRGICEKLKNLIPQQMFQIAIQAAIGGRIIARETVKARRKDVTAKCYGGDITRKRKLLE 575 (606)
Q Consensus 496 in~~~vdals~i~h~~~a~~~gr~~~~~L~~~iprq~F~v~iqa~~~~~iiare~i~~~rkdvt~kcygGd~trk~KLl~ 575 (606)
|||++|||||+|||+++|+.+||.+|++||++||||||+|||||++||+|||||||+|+||||||||||||+|||+|||+
T Consensus 1 INge~VDALS~Ivhr~~A~~~gr~~v~kLKe~IPrq~f~v~IQA~ig~kiiAre~I~a~RKdVtak~ygGDitRK~KLL~ 80 (108)
T pfam06421 1 INGKPVDALSFIVHRDKAYNRGRELVEKLKELIPRQQFEIPIQAAIGSKIIARETIKALRKNVLAKCYGGDISRKKKLLE 80 (108)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCEEEHHCCCHHHCCEEEEECCCCHHHHHHHHH
T ss_conf 99974046787442998999999999999986879784799999984753540103023244433545998379999999
Q ss_pred HHHHHHHHHHHCCCEECCHHHHHHHHCC
Q ss_conf 9884217875107744588999997424
Q gi|254780321|r 576 KQKEGKKRMRRFGRVDIPQSAFISILKT 603 (606)
Q Consensus 576 ~qk~GKkrmk~~g~v~ip~~af~~~l~~ 603 (606)
+||+||||||++|+|+||||||+++|++
T Consensus 81 kQK~GKkrmk~~G~V~ip~eaF~~vLk~ 108 (108)
T pfam06421 81 KQKEGKKRMKQVGNVEIPQEAFLAVLKL 108 (108)
T ss_pred HHHHHHHHHHHCCCCCCCHHHHHHHHCC
T ss_conf 9986079998569971799999999739
No 49
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=100.00 E-value=4.2e-45 Score=322.45 Aligned_cols=249 Identities=26% Similarity=0.381 Sum_probs=196.1
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHCCEEEEEEEEEEEECCC-CCEEEEEEEECCCCCHHH
Q ss_conf 9998013898778899999982980544443113058677987195052327999974378-843899996178730027
Q gi|254780321|r 14 FSIVAHIDHGKSTLADRFIQHCRGLTEREMSSQVLDNMDIERERGITIKAQTVRLNYTSTD-AKDYQLNLIDTPGHVDFT 92 (606)
Q Consensus 14 ~~IiaHvDhGKTTL~d~lL~~tg~i~~~~~~~~vlD~~~~EreRGITIka~~~~~~~~~~~-~~~y~iNlIDTPGH~DF~ 92 (606)
|+..||||||||||+-+| ||.- .|.+++||+||||| .+.|.+.+ ...-.+.|||.|||..|.
T Consensus 3 igTAGHVDHGKTsLvkAL---TG~d---------tDRL~EEk~RGiTI-----dLGFA~~~l~~g~~~g~VDVPGHErFI 65 (615)
T PRK10512 3 IATAGHVDHGKTTLLQAI---TGVN---------ADRLPEEKKRGMTI-----DLGYAYWPQPDGRVLGFIDVPGHEKFL 65 (615)
T ss_pred EEEECCCCCCHHHHHHHH---HCCC---------CCCCHHHHHHCCEE-----EECEEEEECCCCCEEEEEECCCHHHHH
T ss_conf 996365477899999998---6888---------65697789718727-----713075557999789998799838999
Q ss_pred HHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCC-EEEEECCCCCCCCC-CCCHHHHHHHHH---HHHHHHHHH
Q ss_conf 9999999730268999986878865589999999970996-79983267887532-113388877555---322321000
Q gi|254780321|r 93 YEVSRSLSACEGSLLVVDATQGVEAQTLANVYQAIDNNHE-IITVLNKADLPSAD-PDRVKKQIEETI---GISTEDALL 167 (606)
Q Consensus 93 ~EV~r~l~a~dgaiLvVdA~~Gvq~QT~~~~~~A~~~~l~-~I~viNKiD~~~A~-~e~v~~ei~~~~---g~~~~~ii~ 167 (606)
--.-......|.|+|||+|.+||||||++|+..+...|++ .|+||||+|+.+.+ .+.+.+|+.+++ .+....+++
T Consensus 66 knMlAG~~gid~vlLVVAAdeGvMPQT~EHl~Il~lLgi~~giV~lTK~Dlvd~e~l~~v~~ei~~~l~~t~l~~~pi~~ 145 (615)
T PRK10512 66 SNMLAGVGGIDHALLVVACDDGVMAQTREHLAILQLTGNPMLTVALTKADRVDEARIDEVRRQVLEVLREYGFAEAKLFV 145 (615)
T ss_pred HHHHHHHHHCCEEEEEEECCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEE
T ss_conf 99974464378899999889987723799999999819982899997765689799999999999998447876797520
Q ss_pred HHHHCCCCCCHHHHHHHHHHHCCCCHHHHHCCCCCCCCCEEEC-CCCCEEEEEEECCCCCCCCCEEEEECCCCCCCCCCC
Q ss_conf 1110022320067877632100011112201233101210114-757259999816987355845887335564210122
Q gi|254780321|r 168 VSAKTGEGIPLLLERIVQQLPSPTSPEGANAPLKALLIDSWYN-SYLGVMVLVRIINGQLTKGQSIRLMGTNAKYQVERI 246 (606)
Q Consensus 168 vSAktG~GV~~LLd~Iv~~iP~P~~~~~~~~Pl~alVfds~~D-~~~G~I~~~RV~sG~lk~Gd~I~~~~~g~~~~v~~i 246 (606)
|||.||.|+++|.+++.+..+ +. ...+++||+.| |-.|. +..|.|++|.+.||+++.||++.+++.++..+|..+
T Consensus 146 vSa~tg~Gi~~L~~~L~~l~~-~~--~~~~~~fRL~I-DRvFsvkG~GTVVTGTl~sG~v~~GD~l~i~P~~~~~rVR~i 221 (615)
T PRK10512 146 TAATEGRGIDALREHLLQLPE-RE--HASQHRFRLAI-DRAFTVKGAGLVVTGTALSGEVKVGDTLWLTGVNKPMRVRAL 221 (615)
T ss_pred CCCCCCCCHHHHHHHHHHHCC-CC--CCCCCCEEEEE-EEEEECCCCCEEEEEEEECCEECCCCEEEECCCCCEEEEEEH
T ss_conf 145666799999999986255-66--67677617883-118962688569999981471426998998699967987347
Q ss_pred CCCCCCEEEEHHCCCCCHHHH-HHC-CCCCCCCCCCCEECCCC
Q ss_conf 233554124010124712332-201-10024444542000466
Q gi|254780321|r 247 GILTPKMIDIEALYPGEIGVM-IAS-IKEVSHTRVGDTITDDS 287 (606)
Q Consensus 247 g~~~~~~~~v~~l~aGdVG~i-i~g-ik~l~~~~vGDTl~~~~ 287 (606)
.. +..+++++.||+=.++ +.| + +.++++-||.|+.+.
T Consensus 222 Q~---h~~~v~~a~aG~R~AlNL~G~v-~~~~i~RGd~L~~~~ 260 (615)
T PRK10512 222 HA---QNQPTETAHAGQRIALNIAGDA-EKEQINRGDWLLADA 260 (615)
T ss_pred HH---CCCCCCEECCCCEEEEEECCCC-CHHHCCCCCEEECCC
T ss_conf 76---7981557327745999612544-672317866892388
No 50
>PRK12312 infB translation initiation factor IF-2; Provisional
Probab=100.00 E-value=2.1e-44 Score=317.61 Aligned_cols=424 Identities=21% Similarity=0.304 Sum_probs=275.2
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHCCEEEEEEEEEEEECCCCCEEEEEEEECCCCCHHH
Q ss_conf 79998013898778899999982980544443113058677987195052327999974378843899996178730027
Q gi|254780321|r 13 NFSIVAHIDHGKSTLADRFIQHCRGLTEREMSSQVLDNMDIERERGITIKAQTVRLNYTSTDAKDYQLNLIDTPGHVDFT 92 (606)
Q Consensus 13 N~~IiaHvDhGKTTL~d~lL~~tg~i~~~~~~~~vlD~~~~EreRGITIka~~~~~~~~~~~~~~y~iNlIDTPGH~DF~ 92 (606)
=++|+||||||||||.|++- .|. +...|++ |||-.-.+..+.| +.-+|.|||||||.-|+
T Consensus 119 vVtimGHVDHGKTsLLD~iR-~t~-V~~~EaG-------------GITQhIGA~~v~~-----~~~~itFiDTPGHeAFt 178 (610)
T PRK12312 119 IVTIMGHVDHGKTTLLDTIR-KTN-VVASEAG-------------GITQHIGAYQVEY-----QGKKITFIDTPGHEAFT 178 (610)
T ss_pred EEEEECCCCCCHHHHHHHHH-CCC-CCCCCCC-------------CCCCEECEEEEEE-----CCCEEEEECCCCHHHHH
T ss_conf 89996772577225889985-486-4134677-------------6644004499986-----79768997289679899
Q ss_pred HHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHH------HH
Q ss_conf 999999973026899998687886558999999997099679983267887532113388877555322321------00
Q gi|254780321|r 93 YEVSRSLSACEGSLLVVDATQGVEAQTLANVYQAIDNNHEIITVLNKADLPSADPDRVKKQIEETIGISTED------AL 166 (606)
Q Consensus 93 ~EV~r~l~a~dgaiLvVdA~~Gvq~QT~~~~~~A~~~~l~~I~viNKiD~~~A~~e~v~~ei~~~~g~~~~~------ii 166 (606)
.-..|..+++|-|+|||+|.+||||||++...+|...++|+|++|||||+|+|+++++..|+.+ .|+.+++ ++
T Consensus 179 ~mR~RGa~vtDI~iLVVaaddGv~pQTiEaI~~ak~a~vpiiVAiNKiDkp~a~~~~v~~~L~~-~g~~~E~~GGdv~~V 257 (610)
T PRK12312 179 EMRARGAKVTDIVILVVAADDGVKPQTEEAIDHAKAANVPIIVFVNKMDKPNANPDRIKNELSK-YDLVPEEWGGDTPFV 257 (610)
T ss_pred HHHHCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHH-HCCCHHHHCCCCEEE
T ss_conf 9997077654579999975789774269999999975998899850446788987899999987-076678857944599
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHCCCCHHHHHCCCCCCCCCEEECCCCCEEEEEEECCCCCCCCCEEEEECCCCCCCCCCC
Q ss_conf 01110022320067877632100011112201233101210114757259999816987355845887335564210122
Q gi|254780321|r 167 LVSAKTGEGIPLLLERIVQQLPSPTSPEGANAPLKALLIDSWYNSYLGVMVLVRIINGQLTKGQSIRLMGTNAKYQVERI 246 (606)
Q Consensus 167 ~vSAktG~GV~~LLd~Iv~~iP~P~~~~~~~~Pl~alVfds~~D~~~G~I~~~RV~sG~lk~Gd~I~~~~~g~~~~v~~i 246 (606)
++||++|.|+++||++|.-..---.-..+++.|.++.|..+..|+.+|.++.+-|.+|+|+.||.+..-.+.. +|..
T Consensus 258 ~iSAktg~GId~LLe~IlL~AE~leLka~~~~~a~G~VIEsk~dkg~G~vatviVq~GtLk~GD~iV~G~~~G--kVRa- 334 (610)
T PRK12312 258 YGSALKNEGIDELLDSILLLAEILNLKANPNRLAIGTVIEAKLDKGKGPVATLIVQNGTLKVGDFIVAGSTYG--KIRS- 334 (610)
T ss_pred EEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCCCEEEEEEECCEEECCCEEEECCCCC--CCCE-
T ss_conf 9036879899999999999999876522789860699999786168763689998358781599899898668--6215-
Q ss_pred CCCCCCEEEEHHCCCCCHHHHHHCCCCCCCCCCCCEECCCCCCCC-CCC----------------------CCCCC-CCC
Q ss_conf 233554124010124712332201100244445420004667853-236----------------------45522-221
Q gi|254780321|r 247 GILTPKMIDIEALYPGEIGVMIASIKEVSHTRVGDTITDDSSPTT-SAL----------------------PGFKP-IQP 302 (606)
Q Consensus 247 g~~~~~~~~v~~l~aGdVG~ii~gik~l~~~~vGDTl~~~~~p~~-~~L----------------------p~~~~-~~P 302 (606)
.+.....+++++.++..- .+.|+.++ -..||.+...++... ..+ ..+.. ..+
T Consensus 335 -m~d~~g~~lk~A~PS~pV-~I~Gl~~v--P~aGd~~~vv~~Ek~Ak~ia~~r~~~~~~~~~~~~~~e~~~~~~~~~~~k 410 (610)
T PRK12312 335 -MEDENGKKLKKALPSTPV-KVSGLNEV--PQAGDKFIVFNDEKFAKKIANEKKQKQKQNELKSLQLEDIKQNIDSGELK 410 (610)
T ss_pred -EECCCCCCCCCCCCCCCE-EEECCCCC--CCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf -773678614341799857-98467567--56797699728899999999999999999887440088899886336751
Q ss_pred EEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCC--------------CCCCCCCCCEEEEEECCHHHHHHHHHHHHHHC
Q ss_conf 2664212677024578899998886411221112--------------56760004202899637678988898886644
Q gi|254780321|r 303 VVFCGLFPVDATQFENLRTAINKLRLNDASFSFE--------------LENSTALGFGFRCGFLGLLHLEIIQERLEREF 368 (606)
Q Consensus 303 ~v~~~i~p~~~~d~~~L~~aL~kL~~~D~sl~~e--------------~Ets~aLg~Gfr~gglG~LHLeVi~eRL~rEf 368 (606)
.+-.-+-.-..+..+.|.++|.++..++..+.+- ..+|.|...||.+.- +--..++-++.
T Consensus 411 ~l~vIIKADv~GSlEAI~~sL~kl~~~eV~i~Ii~agVG~ItesDV~LA~as~AiIigFNV~~------~~~a~~~A~~~ 484 (610)
T PRK12312 411 ELNIIIKADVQGSLEAIKGIISKINVSGVKINIIRAAVGTISESDILLAQTSNSIIIGFNVKP------SAIIKKLAESQ 484 (610)
T ss_pred EEEEEEEECCCCCHHHHHHHHHHCCCCCEEEEEEECCCCCCCHHHHHHHHHCCCCEEEECCCC------CHHHHHHHHHC
T ss_conf 233799846676499999998656886435778633457776889999986699189973768------87799987744
Q ss_pred CCEEEEECCCCCEEEEEECCCEEECCCHHHCCCHHHHHHHHCCEEEEEEEECCCCCHHHHHHHHHHHHEEECCCC-----
Q ss_conf 950697378233033531564541269666258677888623269999980831000389998863001424433-----
Q gi|254780321|r 369 SLNLIGTSPSVVYELYMHDGSMQKLSNPIDMPEVTKIAELREPWIQVTIITPNEYLGSILKLCQERRGIQIDMSH----- 443 (606)
Q Consensus 369 g~ev~~t~P~V~Ykv~~~dG~~~~Vd~p~~~p~~~~i~~i~EPi~~~~I~~P~ey~G~Vm~~l~~RRG~~~~m~~----- 443 (606)
|+++... +|+|+.. |.= ...+..+++|...-.++=..+-. .+.. .++-|.+-+..-
T Consensus 485 gV~Ir~y--~IIY~Li--Ddv------------k~~m~g~L~p~~~E~~iG~AeV~-~vF~--~sk~g~IAGc~V~~G~i 545 (610)
T PRK12312 485 GIKIRSH--NIIYKII--EEI------------EKILKGMLDPVYEEVVIGQAEVR-KLFK--HSKVGTIAGCYVTSGKV 545 (610)
T ss_pred CCCEEEE--CHHHHHH--HHH------------HHHHHCCCCCCEEEEEEEEEEEE-EEEE--CCCCEEEEEEEEEECEE
T ss_conf 8626984--2288899--999------------99984589972479998999988-8886--48861789999974689
Q ss_pred -CCCE------EEEEEEECHHHHHHHHHHHHHHHCCCE--EEEEEEECCCEECCEE
Q ss_conf -6836------999999604333220468767635741--8889854354643667
Q gi|254780321|r 444 -LDNR------AMIVYELPLNEVIFDFYDRLKSVSKGY--ASFDYNVIDYRDSDLV 490 (606)
Q Consensus 444 -~~~~------~~i~~~vPl~Eli~~f~~~LkS~T~G~--as~~ye~~~Y~~~dlv 490 (606)
.+.. -.+.|+-.+..| .-|.+..+...+|+ |..=-.|..|+++|+.
T Consensus 546 ~r~~~vRVlR~~~vI~eG~I~SL-rr~KddVkEV~~G~ECGI~l~~f~di~~GDiI 600 (610)
T PRK12312 546 KRNAKVRVIRNGKVIHEGKIASL-KHLKDDVKEVEKGKECGIHIKNFNDIKENDII 600 (610)
T ss_pred EECCEEEEEECCEEEEEEEEHHH-HHCCCCCCHHCCCCCCEEEECCCCCCCCCCEE
T ss_conf 71984899889999997167774-02010211205895324883273568769899
No 51
>CHL00189 infB translation initiation factor 2; Provisional
Probab=100.00 E-value=2.7e-44 Score=316.91 Aligned_cols=426 Identities=19% Similarity=0.265 Sum_probs=273.9
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHCCEEEEEEEEEEEECCCCCEEEEEEEECCCCCHHH
Q ss_conf 79998013898778899999982980544443113058677987195052327999974378843899996178730027
Q gi|254780321|r 13 NFSIVAHIDHGKSTLADRFIQHCRGLTEREMSSQVLDNMDIERERGITIKAQTVRLNYTSTDAKDYQLNLIDTPGHVDFT 92 (606)
Q Consensus 13 N~~IiaHvDhGKTTL~d~lL~~tg~i~~~~~~~~vlD~~~~EreRGITIka~~~~~~~~~~~~~~y~iNlIDTPGH~DF~ 92 (606)
=+.|+||||||||||.|+|- .|. +...|++ |||-.-.+-++.|... ....+|.|||||||.-|+
T Consensus 274 VVTIMGHVDHGKTsLLD~iR-~t~-Va~~EaG-------------GITQhIGAy~V~~~~~-~~~~~ITFlDTPGHeAFt 337 (770)
T CHL00189 274 IVTILGHVDHGKTTLLDAIR-KTN-IAQKEAG-------------GITQKIGAYEVEVPYK-DQNQKIVFLDTPGHEAFS 337 (770)
T ss_pred EEEEECCCCCCHHHHHHHHH-CCC-CCCCCCC-------------CCCCEECEEEEEECCC-CCCCEEEEECCCCHHHHH
T ss_conf 89985772577203788885-288-5134567-------------6555035299975157-889758995599468899
Q ss_pred HHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHH------HH
Q ss_conf 999999973026899998687886558999999997099679983267887532113388877555322321------00
Q gi|254780321|r 93 YEVSRSLSACEGSLLVVDATQGVEAQTLANVYQAIDNNHEIITVLNKADLPSADPDRVKKQIEETIGISTED------AL 166 (606)
Q Consensus 93 ~EV~r~l~a~dgaiLvVdA~~Gvq~QT~~~~~~A~~~~l~~I~viNKiD~~~A~~e~v~~ei~~~~g~~~~~------ii 166 (606)
....|.-.++|-|||||+|.+||||||++....|...++|+|++|||||+|+|+|++|..|+.+. |+.+++ ++
T Consensus 338 ~MRaRGA~vTDIvILVVAADDGVmPQTiEAI~hakaA~VPiIVAINKiDkp~an~~rVk~eL~e~-gli~EewGGd~~~V 416 (770)
T CHL00189 338 SMRSRGANVTDIAILIVAADDGVKPQTIEAINHIQAANVPIIVAINKIDKENANIDRVKQELSKY-NLISEKWGGQTPMI 416 (770)
T ss_pred HHHHCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHC-CCCHHHCCCCEEEE
T ss_conf 99862786666799999657885672799999998769988999877458998857899999986-95522237955999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHCCCCHHHHHCCCCCCCCCEEECCCCCEEEEEEECCCCCCCCCEEEEECCCCCC-CCCC
Q ss_conf 011100223200678776321000111122012331012101147572599998169873558458873355642-1012
Q gi|254780321|r 167 LVSAKTGEGIPLLLERIVQQLPSPTSPEGANAPLKALLIDSWYNSYLGVMVLVRIINGQLTKGQSIRLMGTNAKY-QVER 245 (606)
Q Consensus 167 ~vSAktG~GV~~LLd~Iv~~iP~P~~~~~~~~Pl~alVfds~~D~~~G~I~~~RV~sG~lk~Gd~I~~~~~g~~~-~v~~ 245 (606)
++||++|.|++.|||+|.-...--.-..+++.|.++.|..+..|+.+|.++++-|.+|+|+.||-+.. |..| +|..
T Consensus 417 ~ISAktg~gId~LLE~IlL~AEvlELkAnp~~~A~GvVIES~ldkgrG~VATvLVQ~GTLkvGD~iVa---G~~~GKVRa 493 (770)
T CHL00189 417 PISALQGTNIDKLLEMILLLAEIENLQADPTQLAQGTILEAHLDKTKGPVATLLVQNGTLRIGDIIVA---GTSLGKIRG 493 (770)
T ss_pred EEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEECCCCCCEEEEEEECCEECCCCEEEE---CCCEEEEEE
T ss_conf 96616798879999999999878752368898614999997651686776899995484403999998---363447889
Q ss_pred CCCCCCCEEEEHHCCCCCHHHHHHCCCCCCCCCCCCEECCCCCCCC-CC------------------CCC----CC-CCC
Q ss_conf 2233554124010124712332201100244445420004667853-23------------------645----52-222
Q gi|254780321|r 246 IGILTPKMIDIEALYPGEIGVMIASIKEVSHTRVGDTITDDSSPTT-SA------------------LPG----FK-PIQ 301 (606)
Q Consensus 246 ig~~~~~~~~v~~l~aGdVG~ii~gik~l~~~~vGDTl~~~~~p~~-~~------------------Lp~----~~-~~~ 301 (606)
+ +......++++.++... -|.|+.++- ..||.+...++... .. +.. .. ...
T Consensus 494 M--~Dd~Gk~vkeA~PS~PV-eIlGl~~vP--~AGD~f~vv~sEk~Ak~ia~~r~~~~~~~~~~~~sl~~l~~~~~e~~~ 568 (770)
T CHL00189 494 M--INSAGNKINEAGPSSPV-EIWGLSSVP--ATGEYFQVVNSEKEAKLKVIENPESNQKQTTSRITLDTPKTINSEDEK 568 (770)
T ss_pred E--ECCCCCCCCCCCCCCCE-EEECCCCCC--CCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCC
T ss_conf 8--89999844554899868-987787898--779889993799999999999999999977521265559878632774
Q ss_pred CEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCC--------------CCCCCCCCCEEEEEECCHHHHHHHHHHHHHH
Q ss_conf 12664212677024578899998886411221112--------------5676000420289963767898889888664
Q gi|254780321|r 302 PVVFCGLFPVDATQFENLRTAINKLRLNDASFSFE--------------LENSTALGFGFRCGFLGLLHLEIIQERLERE 367 (606)
Q Consensus 302 P~v~~~i~p~~~~d~~~L~~aL~kL~~~D~sl~~e--------------~Ets~aLg~Gfr~gglG~LHLeVi~eRL~rE 367 (606)
+.+-.-+-.-..+..+.+.++|.+|..+...+.+- ...|.|.-.||.+. ..- -+....+++
T Consensus 569 k~LnlIIKADvqGSlEAI~~sL~kl~~~eV~v~II~sgVG~ITESDV~LA~aS~AiIIGFNVr----~~~-~ak~~Ae~~ 643 (770)
T CHL00189 569 KQLNLIIKTDTQGSIEAILNSLSQIPQKKVQLNVLYSSPGEITETDVDLASTTNALIIAFNTN----LAP-GAKKAARKL 643 (770)
T ss_pred EEEEEEEEECCCCCHHHHHHHHHHCCCCCEEEEEEEECCCCCCHHHHHHHHCCCCEEEEECCC----CCH-HHHHHHHHC
T ss_conf 076499991775309999999970898858999998321577663676765049889996279----897-899999975
Q ss_pred CCCEEEEECCCCCEEEEEECCCEEECCCHHHCCCHHHHHHHHCCEEEEEEEECCCCCHHHHHHHHHHHHEEECCCCCC--
Q ss_conf 495069737823303353156454126966625867788862326999998083100038999886300142443368--
Q gi|254780321|r 368 FSLNLIGTSPSVVYELYMHDGSMQKLSNPIDMPEVTKIAELREPWIQVTIITPNEYLGSILKLCQERRGIQIDMSHLD-- 445 (606)
Q Consensus 368 fg~ev~~t~P~V~Ykv~~~dG~~~~Vd~p~~~p~~~~i~~i~EPi~~~~I~~P~ey~G~Vm~~l~~RRG~~~~m~~~~-- 445 (606)
|+++... +|+|++. |.- ...+..+++|..+-.++=-.+- -.+. .--+|.+-+.--.+
T Consensus 644 -gV~Ir~y--~IIY~Li--Ddv------------k~~m~glL~P~~~E~~iG~AeV-r~vF---~isKg~IAGc~Vt~G~ 702 (770)
T CHL00189 644 -NVDIREY--DVIYDLV--EDI------------EYSMEDLLDPEYDKVPIGEAEV-QTVF---SLAKSFVAGCRVTSGK 702 (770)
T ss_pred -CCEEEEE--CCHHHHH--HHH------------HHHHHCCCCCEEEEEEEEEEEE-EEEE---ECCCCEEEEEEEEECE
T ss_conf -9748991--6088899--999------------9998457997068999899999-9999---5289669899998178
Q ss_pred ----CEE------EEEEEECHHHHHHHHHHHHHHHCCCE--EEEEEEECCCEECCEE
Q ss_conf ----369------99999604333220468767635741--8889854354643667
Q gi|254780321|r 446 ----NRA------MIVYELPLNEVIFDFYDRLKSVSKGY--ASFDYNVIDYRDSDLV 490 (606)
Q Consensus 446 ----~~~------~i~~~vPl~Eli~~f~~~LkS~T~G~--as~~ye~~~Y~~~dlv 490 (606)
..+ .+.|+=.++.| .-|-+..+....|| |..=-.|..++++|+.
T Consensus 703 I~r~~~vRViR~~~vI~eG~I~SL-KRfKddVkEV~~G~ECGI~l~~fnDik~GDiI 758 (770)
T CHL00189 703 ILKNAHIKVIRKNKLIFEGDINSL-KRVKEDVEEVQEGNECGIFIEEFQLWQSGDKI 758 (770)
T ss_pred EECCCCEEEEECCEEEEEEEEHHH-HCCCCCCCHHCCCCCCEEECCCCCCCCCCCEE
T ss_conf 963992799769989998076775-00320202315994153770483437779899
No 52
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=100.00 E-value=2.2e-44 Score=317.35 Aligned_cols=173 Identities=31% Similarity=0.541 Sum_probs=146.3
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCCC-------C---------CEEECCCHHHHHHCCEEEEEEEEEEEECCCCC
Q ss_conf 7999801389877889999998298054444-------3---------11305867798719505232799997437884
Q gi|254780321|r 13 NFSIVAHIDHGKSTLADRFIQHCRGLTEREM-------S---------SQVLDNMDIERERGITIKAQTVRLNYTSTDAK 76 (606)
Q Consensus 13 N~~IiaHvDhGKTTL~d~lL~~tg~i~~~~~-------~---------~~vlD~~~~EreRGITIka~~~~~~~~~~~~~ 76 (606)
||+++||||||||||++|||+.+|.+.++.. . ..+||++++||||||||......+ +|+
T Consensus 1 Ni~iiGHvD~GKSTL~g~lL~~~g~i~~~~~~k~~~~~~~~gk~s~~~a~~lD~~~~ErerGiTI~~~~~~f-----~~~ 75 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKF-----ETE 75 (219)
T ss_pred CEEEEECCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHCCCCEEEEEEEE-----EEC
T ss_conf 989996689989999999999859976889999999998549987505566138987985892588589999-----849
Q ss_pred EEEEEEEECCCCCHHHHHHHHHHHHCCEEEEEEECCCC-------CCHHHHHHHHHHHHCCCC-EEEEECCCCCCCC---
Q ss_conf 38999961787300279999999730268999986878-------865589999999970996-7998326788753---
Q gi|254780321|r 77 DYQLNLIDTPGHVDFTYEVSRSLSACEGSLLVVDATQG-------VEAQTLANVYQAIDNNHE-IITVLNKADLPSA--- 145 (606)
Q Consensus 77 ~y~iNlIDTPGH~DF~~EV~r~l~a~dgaiLvVdA~~G-------vq~QT~~~~~~A~~~~l~-~I~viNKiD~~~A--- 145 (606)
++++||||||||.||..++.++++.+|.|||||||.+| +++||++|+++|...|++ +|++|||||++.+
T Consensus 76 ~~~~~iiDtPGH~df~~~mi~g~~~ad~ailvvda~~g~~e~g~~~~~QTreH~~l~~~lGik~iIVavNKMD~v~~~y~ 155 (219)
T cd01883 76 KYRFTILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLARTLGVKQLIVAVNKMDDVTVNWS 155 (219)
T ss_pred CEEEEEEECCCCHHHHHHHHHHHHHCCEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCC
T ss_conf 93699987897266788999877531668999985767510366777659999999998499748999987536886525
Q ss_pred --CCCCHHHHHHHHH---HHHHHHH--HHHHHHCCCCC------------CHHHHHHHHHHHCCC
Q ss_conf --2113388877555---3223210--00111002232------------006787763210001
Q gi|254780321|r 146 --DPDRVKKQIEETI---GISTEDA--LLVSAKTGEGI------------PLLLERIVQQLPSPT 191 (606)
Q Consensus 146 --~~e~v~~ei~~~~---g~~~~~i--i~vSAktG~GV------------~~LLd~Iv~~iP~P~ 191 (606)
+++++.+++.+++ |+..+++ +|+||..|.|| ..||+++ +.+|+|.
T Consensus 156 ~~rf~~i~~~~~~~l~~~g~~~~~~~~IPiSa~~GdNi~~~s~~m~WY~GptLl~~L-d~~~~p~ 219 (219)
T cd01883 156 EERYDEIKKELSPFLKKVGYNPKDVPFIPISGLTGDNLIEKSENMPWYKGPTLLEAL-DSLEPPE 219 (219)
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHH-HCCCCCC
T ss_conf 999999999999999982999566159993367663046678899898781699998-4789989
No 53
>pfam00009 GTP_EFTU Elongation factor Tu GTP binding domain. This domain contains a P-loop motif, also found in several other families such as pfam00071, pfam00025 and pfam00063. Elongation factor Tu consists of three structural domains, this plus two C-terminal beta barrel domains.
Probab=100.00 E-value=5.2e-44 Score=314.96 Aligned_cols=176 Identities=42% Similarity=0.586 Sum_probs=155.1
Q ss_pred HHCEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCC--CEEECCCHHHHHHCCEEEEEEEEEEEECCCCCEEEEEEEECC
Q ss_conf 253179998013898778899999982980544443--113058677987195052327999974378843899996178
Q gi|254780321|r 9 SRIRNFSIVAHIDHGKSTLADRFIQHCRGLTEREMS--SQVLDNMDIERERGITIKAQTVRLNYTSTDAKDYQLNLIDTP 86 (606)
Q Consensus 9 ~~IRN~~IiaHvDhGKTTL~d~lL~~tg~i~~~~~~--~~vlD~~~~EreRGITIka~~~~~~~~~~~~~~y~iNlIDTP 86 (606)
++||||||+||.+||||||+++||+.++.+.++... ...+|+++.||||||||.+..+.+. |+++++||||||
T Consensus 1 ~~~rnVaivG~~n~GKSTL~n~Ll~~~~~i~~~~~~~~~~~~d~~~~E~~rgiTi~~~~~~~~-----~~~~~i~~iDtP 75 (185)
T pfam00009 1 KRHRNIGIIGHVDHGKTTLTDALLYVTGAIDKRGEVKQEGELDRLKEERERGITIKIAAVSFE-----TKKRHINIIDTP 75 (185)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHCCEEEEEEEEEEE-----ECCCEEEEEECC
T ss_conf 996789999389944999999997154876546431003333655888857826987699996-----089368999899
Q ss_pred CCCHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCC-CCCCCCHHHHHHHHH------H
Q ss_conf 730027999999973026899998687886558999999997099679983267887-532113388877555------3
Q gi|254780321|r 87 GHVDFTYEVSRSLSACEGSLLVVDATQGVEAQTLANVYQAIDNNHEIITVLNKADLP-SADPDRVKKQIEETI------G 159 (606)
Q Consensus 87 GH~DF~~EV~r~l~a~dgaiLvVdA~~Gvq~QT~~~~~~A~~~~l~~I~viNKiD~~-~A~~e~v~~ei~~~~------g 159 (606)
||.||..++.++++.+|+|+|||||.+|+++||+.+|.++.+.++|+|+|+||||+. .++++++.+|+.+.+ +
T Consensus 76 Gh~~f~~~~~~~l~~aD~~vlVvda~~G~~~qt~~~~~~~~~~~~p~iv~vNKiD~v~~~~~~~~~~e~~~~ll~~~~~~ 155 (185)
T pfam00009 76 GHVDFTKEMIRGAAQADGAILVVDAVEGVMPQTREHLLLAKQLGVPIIVFINKMDRVDDAELDEVVEEISRELLEKYGFG 155 (185)
T ss_pred CCCCHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 87143999999986465642999867685323099999999828987999977327776769999999999988873248
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHC
Q ss_conf 223210001110022320067877632100
Q gi|254780321|r 160 ISTEDALLVSAKTGEGIPLLLERIVQQLPS 189 (606)
Q Consensus 160 ~~~~~ii~vSAktG~GV~~LLd~Iv~~iP~ 189 (606)
.+...++|+||++|.|+++|+|+|..++|+
T Consensus 156 ~~~~pivpiSA~~G~gv~~Ll~~i~~~lP~ 185 (185)
T pfam00009 156 GETIPVIPGSALTGEGIDTLLEALDLYLPS 185 (185)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHCCC
T ss_conf 998869996789997989999999977859
No 54
>KOG0460 consensus
Probab=100.00 E-value=2.4e-44 Score=317.27 Aligned_cols=264 Identities=26% Similarity=0.440 Sum_probs=205.4
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHCCCCCCCCC-----CCEEECCCHHHHHHCCEEEEEEEEEEEECCCCCEEEEEEEECC
Q ss_conf 17999801389877889999998298054444-----3113058677987195052327999974378843899996178
Q gi|254780321|r 12 RNFSIVAHIDHGKSTLADRFIQHCRGLTEREM-----SSQVLDNMDIERERGITIKAQTVRLNYTSTDAKDYQLNLIDTP 86 (606)
Q Consensus 12 RN~~IiaHvDhGKTTL~d~lL~~tg~i~~~~~-----~~~vlD~~~~EreRGITIka~~~~~~~~~~~~~~y~iNlIDTP 86 (606)
-|++-|||||||||||+-++- ....+.+. -++ .|.-++||.||||| +++.+.|...+ +.|- -+|||
T Consensus 55 vNVGTIGHVDHGKTTLTaAIT---kila~~g~A~~~kyde-ID~APEEkaRGITI--n~aHveYeTa~-RhYa--H~DCP 125 (449)
T KOG0460 55 VNVGTIGHVDHGKTTLTAAIT---KILAEKGGAKFKKYDE-IDKAPEEKARGITI--NAAHVEYETAK-RHYA--HTDCP 125 (449)
T ss_pred CCCCCCCCCCCCCHHHHHHHH---HHHHHCCCCCCCCHHH-HHCCHHHHHCCCEE--EEEEEEEECCC-CCCC--CCCCC
T ss_conf 520330033577200899999---9997516501054766-53382665356167--64356642244-3001--47899
Q ss_pred CCCHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCC-EEEEECCCCCC-CCC-CCCHHHHHHHH---HHH
Q ss_conf 7300279999999730268999986878865589999999970996-79983267887-532-11338887755---532
Q gi|254780321|r 87 GHVDFTYEVSRSLSACEGSLLVVDATQGVEAQTLANVYQAIDNNHE-IITVLNKADLP-SAD-PDRVKKQIEET---IGI 160 (606)
Q Consensus 87 GH~DF~~EV~r~l~a~dgaiLvVdA~~Gvq~QT~~~~~~A~~~~l~-~I~viNKiD~~-~A~-~e~v~~ei~~~---~g~ 160 (606)
||+||.--..-.-+-.|||||||+|++|+||||++|+.+|.+.|++ +++||||.|.. +++ .|-|.-|+.|+ +|+
T Consensus 126 GHADYIKNMItGaaqMDGaILVVaatDG~MPQTrEHlLLArQVGV~~ivvfiNKvD~V~d~e~leLVEmE~RElLse~gf 205 (449)
T KOG0460 126 GHADYIKNMITGAAQMDGAILVVAATDGPMPQTREHLLLARQVGVKHIVVFINKVDLVDDPEMLELVEMEIRELLSEFGF 205 (449)
T ss_pred CHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCC
T ss_conf 63889987532732367349999747898840688888898728764999971202468889999999999999997299
Q ss_pred HHHH--HHHHHHHC---C----C---CCCHHHHHHHHHHHCCCCHHHHHCCCCCCCCCEEECCCCCEEEEEEECCCCCCC
Q ss_conf 2321--00011100---2----2---320067877632100011112201233101210114757259999816987355
Q gi|254780321|r 161 STED--ALLVSAKT---G----E---GIPLLLERIVQQLPSPTSPEGANAPLKALLIDSWYNSYLGVMVLVRIINGQLTK 228 (606)
Q Consensus 161 ~~~~--ii~vSAkt---G----~---GV~~LLd~Iv~~iP~P~~~~~~~~Pl~alVfds~~D~~~G~I~~~RV~sG~lk~ 228 (606)
+.++ ++..||.. | + .|..|||++-+|+|-|. ++.+.||-+.|-+.+.-+.||.|+.+|+..|+||+
T Consensus 206 ~Gd~~PvI~GSAL~ALeg~~peig~~aI~kLldavDsyip~P~--R~~~~pFl~pie~vfsI~GRGTVvtGrlERG~lKk 283 (449)
T KOG0460 206 DGDNTPVIRGSALCALEGRQPEIGLEAIEKLLDAVDSYIPTPE--RDLDKPFLLPIEDVFSIPGRGTVVTGRLERGVLKK 283 (449)
T ss_pred CCCCCCEEECCHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCC--CCCCCCCEEEHHHEEEECCCCEEEEEEEEECCCCC
T ss_conf 9887876632012222278842057999999998751589852--13577740430024661588349987785022146
Q ss_pred CCEEEEECCCCCCCCCCCCCCCCCEEEEHHCCCCC-HHHHHHCCCCCCCCCCCCEECCCCC
Q ss_conf 84588733556421012223355412401012471-2332201100244445420004667
Q gi|254780321|r 229 GQSIRLMGTNAKYQVERIGILTPKMIDIEALYPGE-IGVMIASIKEVSHTRVGDTITDDSS 288 (606)
Q Consensus 229 Gd~I~~~~~g~~~~v~~ig~~~~~~~~v~~l~aGd-VG~ii~gik~l~~~~vGDTl~~~~~ 288 (606)
|+++-+...++..+..--| ....++.++++.||| +|.+..|+| .++++.|-.+|.+..
T Consensus 284 G~e~eivG~~~~lkttvtg-iemF~K~ld~a~AGDn~G~LlRGik-~~dvkRGmvl~~pGs 342 (449)
T KOG0460 284 GDEVEIVGHNKTLKTTVTG-IEMFRKSLDEAQAGDNLGALLRGIK-REDVKRGMVLAKPGS 342 (449)
T ss_pred CCEEEEECCCCCEEEEEEH-HHHHHHHHHHCCCCCCEEHHHHCCC-HHHHHCCCEEECCCC
T ss_conf 8878985067640468626-9999877775015562016451477-878744528736886
No 55
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=100.00 E-value=1.4e-42 Score=305.39 Aligned_cols=263 Identities=24% Similarity=0.327 Sum_probs=188.8
Q ss_pred CEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHCCEEEEEEEEEE------------EECCCC---
Q ss_conf 31799980138987788999999829805444431130586779871950523279999------------743788---
Q gi|254780321|r 11 IRNFSIVAHIDHGKSTLADRFIQHCRGLTEREMSSQVLDNMDIERERGITIKAQTVRLN------------YTSTDA--- 75 (606)
Q Consensus 11 IRN~~IiaHvDhGKTTL~d~lL~~tg~i~~~~~~~~vlD~~~~EreRGITIka~~~~~~------------~~~~~~--- 75 (606)
.=||+.|||||||||||+-+| ||..+ |...+|++|||||+..-+... |.....
T Consensus 37 ~vNIGtiGHVDHGKTTLvkAL---Tgv~t---------~r~~eE~~RgiTI~LGya~~kiykc~~~~~p~~y~~~~s~~~ 104 (460)
T PTZ00327 37 TINIGTIGHVAHGKSTVVKAL---SGVKT---------VRFHREKVRNITIKLGYANAKIYKCTKCPPPACYKSYPSSKP 104 (460)
T ss_pred CEEEEEECCCCCCHHHHHHHH---HCCCH---------HHCHHHHHCCCEEEECCCCEEEECCCCCCCCCCEECCCCCCC
T ss_conf 218988746289899999998---67750---------106567875872120543301113656776310101466665
Q ss_pred -------------CEEEEEEEECCCCCHHHHHHHHHHHHCCEEEEEEECCCCC-CHHHHHHHHHHHHCCCC-EEEEECCC
Q ss_conf -------------4389999617873002799999997302689999868788-65589999999970996-79983267
Q gi|254780321|r 76 -------------KDYQLNLIDTPGHVDFTYEVSRSLSACEGSLLVVDATQGV-EAQTLANVYQAIDNNHE-IITVLNKA 140 (606)
Q Consensus 76 -------------~~y~iNlIDTPGH~DF~~EV~r~l~a~dgaiLvVdA~~Gv-q~QT~~~~~~A~~~~l~-~I~viNKi 140 (606)
-..++.+||+|||.||..-.....+..|+|||||+|.+|+ ||||++|+.++...|++ +|+|+||+
T Consensus 105 ~~~~c~~c~~~~t~~Rh~s~VDcPGH~~l~~nmi~Ga~~mD~aiLvvaa~eg~P~pQT~EHl~~~~~~gi~~~iv~~nK~ 184 (460)
T PTZ00327 105 DNPQCPGCGHKMTLKRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQTSEHLAAVEIMKLKHIIILQNKI 184 (460)
T ss_pred CCCCCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHCHHHCCEEEEEEECCCCCCCCHHHHHHHHHHHHCCCEEEEEECCC
T ss_conf 55445555654312204899868987999999874763376799999868888764689999999972897199995354
Q ss_pred CCCCC-CCCCHHHHHHHHHH---HHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCHHHHHCCCCCCCCCEEECCC----
Q ss_conf 88753-21133888775553---22321000111002232006787763210001111220123310121011475----
Q gi|254780321|r 141 DLPSA-DPDRVKKQIEETIG---ISTEDALLVSAKTGEGIPLLLERIVQQLPSPTSPEGANAPLKALLIDSWYNSY---- 212 (606)
Q Consensus 141 D~~~A-~~e~v~~ei~~~~g---~~~~~ii~vSAktG~GV~~LLd~Iv~~iP~P~~~~~~~~Pl~alVfds~~D~~---- 212 (606)
|+..- +..+..+||.+++. .+...++++||..+.|++.|+++|.+++|.|. ++.+.||++.|-+|+--..
T Consensus 185 DlV~~e~~~~~~~ei~~~l~~t~~~~~PIIpvSA~~~~nid~L~~~i~~~ip~P~--R~~~~~~~m~I~rsFdIngpg~~ 262 (460)
T PTZ00327 185 DLIKEVQALDQYEEIRNFIDGTIAENAPIIPISAQLKYNIDVLLEYICTQIPIPK--RDLTSPPRMIVIRSFDVNKPGED 262 (460)
T ss_pred CCCCHHHHHHHHHHHHHHHCCCCCCCCCEEECCHHHCCCHHHHHHHHHHHCCCCC--CCCCCCCEEEEEEEECCCCCCCC
T ss_conf 4558899999999999985257677999875654450587999999997589998--88899953748746715789866
Q ss_pred ----CCEEEEEEECCCCCCCCCEEEEEC----C--CCCC--C--CCCCCCCCCCEEEEHHCCCCC-HHHHH---HCCCCC
Q ss_conf ----725999981698735584588733----5--5642--1--012223355412401012471-23322---011002
Q gi|254780321|r 213 ----LGVMVLVRIINGQLTKGQSIRLMG----T--NAKY--Q--VERIGILTPKMIDIEALYPGE-IGVMI---ASIKEV 274 (606)
Q Consensus 213 ----~G~I~~~RV~sG~lk~Gd~I~~~~----~--g~~~--~--v~~ig~~~~~~~~v~~l~aGd-VG~ii---~gik~l 274 (606)
+|.|+.|+|.+|.++.||+|.+.. . +.+. + .+++--+.....+++++.+|. +|.-+ .+++ -
T Consensus 263 ~~~lrGtVvtGti~~G~lkvGDeIEI~PG~~~~~~~~k~~~~pi~t~I~sl~~~~~~l~~a~pGGligiGT~Ldp~lt-r 341 (460)
T PTZ00327 263 IENLRGGVAGGSILQGVLKVGDEVEIRPGIVSKDSGGKFTCSPIRTRIVSLKAEQNELQYAVPGGLIGVGTTIDPTLT-R 341 (460)
T ss_pred CCCCCCEEEEEEEEEEEEECCCEEEECCCEEEEECCCEEEEEEEEEEEEEEEECCCCHHHCCCCCEEEECCCCCCCCC-C
T ss_conf 567654599889988179369989982675324158659999999999988725852421256753653220146621-1
Q ss_pred CCCCCCCEECCCCC
Q ss_conf 44445420004667
Q gi|254780321|r 275 SHTRVGDTITDDSS 288 (606)
Q Consensus 275 ~~~~vGDTl~~~~~ 288 (606)
.|..+|..++.+..
T Consensus 342 ~D~l~GqVlgkPGs 355 (460)
T PTZ00327 342 ADRLVGQVLGEPGQ 355 (460)
T ss_pred CCCCCCCEEECCCC
T ss_conf 31014677866997
No 56
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=100.00 E-value=1.3e-42 Score=305.65 Aligned_cols=427 Identities=26% Similarity=0.359 Sum_probs=276.3
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHCCEEEEEEEEEEEECCCCCEEEEEEEECCCCCHHH
Q ss_conf 79998013898778899999982980544443113058677987195052327999974378843899996178730027
Q gi|254780321|r 13 NFSIVAHIDHGKSTLADRFIQHCRGLTEREMSSQVLDNMDIERERGITIKAQTVRLNYTSTDAKDYQLNLIDTPGHVDFT 92 (606)
Q Consensus 13 N~~IiaHvDhGKTTL~d~lL~~tg~i~~~~~~~~vlD~~~~EreRGITIka~~~~~~~~~~~~~~y~iNlIDTPGH~DF~ 92 (606)
=+.|+||||||||||.|++- .|. +...+.+ |||-.-.+-++.+ .+ +..|.|||||||.-|+
T Consensus 343 vvt~mghvdhgkt~lld~~r-~~~-v~~~e~g-------------gitq~iga~~v~~--~~--~~~itf~dtpgh~af~ 403 (839)
T PRK05306 343 VVTIMGHVDHGKTSLLDAIR-KTK-VAAGEAG-------------GITQHIGAYQVET--EN--GKKITFLDTPGHEAFT 403 (839)
T ss_pred EEEEECCCCCCHHHHHHHHH-CCC-CCCCCCC-------------CCCCEEEEEEEEE--CC--CCEEEEECCCCHHHHH
T ss_conf 89885774677314899986-287-5355678-------------7552223499995--69--9879985588558899
Q ss_pred HHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHH------HH
Q ss_conf 999999973026899998687886558999999997099679983267887532113388877555322321------00
Q gi|254780321|r 93 YEVSRSLSACEGSLLVVDATQGVEAQTLANVYQAIDNNHEIITVLNKADLPSADPDRVKKQIEETIGISTED------AL 166 (606)
Q Consensus 93 ~EV~r~l~a~dgaiLvVdA~~Gvq~QT~~~~~~A~~~~l~~I~viNKiD~~~A~~e~v~~ei~~~~g~~~~~------ii 166 (606)
....|.-.+.|-+||||.|.+||||||++....|...|+|+|++|||||+|+|||++|..|+.+ .|+.+++ .+
T Consensus 404 ~mr~rga~~tdi~ilvvaaddgv~pqt~eai~~~~~a~vp~ivaink~d~~~a~~~~v~~~l~~-~~~~~e~~gg~~~~v 482 (839)
T PRK05306 404 AMRARGAQVTDIVVLVVAADDGVMPQTIEAINHAKAAGVPIIVAINKIDKPGANPDRVKQELTE-YGLVPEEWGGDTIFV 482 (839)
T ss_pred HHHHCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHH-CCCCHHHCCCCEEEE
T ss_conf 9986357654369999977777567789999999974998899974046788988999999998-498645428944899
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHCCCCHHHHHCCCCCCCCCEEECCCCCEEEEEEECCCCCCCCCEEEEECCCCCCCCCCC
Q ss_conf 01110022320067877632100011112201233101210114757259999816987355845887335564210122
Q gi|254780321|r 167 LVSAKTGEGIPLLLERIVQQLPSPTSPEGANAPLKALLIDSWYNSYLGVMVLVRIINGQLTKGQSIRLMGTNAKYQVERI 246 (606)
Q Consensus 167 ~vSAktG~GV~~LLd~Iv~~iP~P~~~~~~~~Pl~alVfds~~D~~~G~I~~~RV~sG~lk~Gd~I~~~~~g~~~~v~~i 246 (606)
++||++|.||+.|||+|.-.-.--.-..+++.|-++.|..+..|..+|.++++-|.+|+|+.||-+..-.+-. +|..+
T Consensus 483 ~~sa~~~~~~~~l~e~i~l~ae~~~l~a~~~~~a~g~vie~~~~~~~g~v~t~lv~~gtl~~gd~~v~g~~~g--~vr~m 560 (839)
T PRK05306 483 PVSAKTGEGIDELLEAILLQAEVLELKANPDRPARGVVIEAKLDKGRGPVATVLVQNGTLKVGDIVVAGTTYG--RVRAM 560 (839)
T ss_pred EEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEEECCCCCCEEEEEEECCEECCCCEEEEECCCC--CCEEE
T ss_conf 8151578878999999998766520447999861799998775278750589998427132599899810205--51015
Q ss_pred CCCCCCEEEEHHCCCCCHHHHHHCCCCCCCCCCCCEECCCCCCCC-C---------------------CCCC----CCCC
Q ss_conf 233554124010124712332201100244445420004667853-2---------------------3645----5222
Q gi|254780321|r 247 GILTPKMIDIEALYPGEIGVMIASIKEVSHTRVGDTITDDSSPTT-S---------------------ALPG----FKPI 300 (606)
Q Consensus 247 g~~~~~~~~v~~l~aGdVG~ii~gik~l~~~~vGDTl~~~~~p~~-~---------------------~Lp~----~~~~ 300 (606)
+......++++.++... -|.|+.++- ..||.+.-.++... . .|.. ++.-
T Consensus 561 --~~~~g~~~~~a~Ps~pv-~i~G~~~~P--~aGd~~~~~~~e~~a~~~~~~r~~~~~~~~~~~~~~~~l~~~~~~~~~~ 635 (839)
T PRK05306 561 --VDDNGKRVKEAGPSTPV-EILGLSGVP--QAGDEFVVVEDEKKAREIAEYRQEKAREKKLARKQRVSLENLFAQMKEG 635 (839)
T ss_pred --ECCCCCCCCCCCCCCCE-EEECCCCCC--CCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCC
T ss_conf --88999898714898777-960567899--8888778527889999999999999999987553114698898665226
Q ss_pred -CCEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCC--------------CCCCCCCCCEEEEEECCHHHHHHHHHHHH
Q ss_conf -212664212677024578899998886411221112--------------56760004202899637678988898886
Q gi|254780321|r 301 -QPVVFCGLFPVDATQFENLRTAINKLRLNDASFSFE--------------LENSTALGFGFRCGFLGLLHLEIIQERLE 365 (606)
Q Consensus 301 -~P~v~~~i~p~~~~d~~~L~~aL~kL~~~D~sl~~e--------------~Ets~aLg~Gfr~gglG~LHLeVi~eRL~ 365 (606)
...+-.-+-.-..+..+.|..+|.+|.-++..+.+- ..+|.|+-.||.+. .+--..++-
T Consensus 636 ~~k~l~~iiK~Dv~Gs~eAi~~~l~~~~~~~v~~~ii~~~vG~itesDv~lA~as~a~iigFnv~------~~~~~~~~a 709 (839)
T PRK05306 636 EVKELNLILKADVQGSVEALSDSLEKLSTDEVKVRIIHSGVGAITESDVTLAAASNAIIIGFNVR------ADAKARKLA 709 (839)
T ss_pred CCEEEEEEEECCCCCHHHHHHHHHHHCCCCCEEEEEEECCCCCCCHHHHHHHHHCCCEEEEECCC------CCHHHHHHH
T ss_conf 74278789852765439999999983688737899995167777687898898549889995388------898999999
Q ss_pred HHCCCEEEEECCCCCEEEEEECCCEEECCCHHHCCCHHHHHHHHCCEEEEEEEEC----C----CCCHHHHHHHHHHHHE
Q ss_conf 6449506973782330335315645412696662586778886232699999808----3----1000389998863001
Q gi|254780321|r 366 REFSLNLIGTSPSVVYELYMHDGSMQKLSNPIDMPEVTKIAELREPWIQVTIITP----N----EYLGSILKLCQERRGI 437 (606)
Q Consensus 366 rEfg~ev~~t~P~V~Ykv~~~dG~~~~Vd~p~~~p~~~~i~~i~EPi~~~~I~~P----~----ey~G~Vm~~l~~RRG~ 437 (606)
+..|+++..- +|+|++. |-- ...+..+|+|...=.++=- + .-+|.|-+ |.-..|.
T Consensus 710 ~~~~v~i~~y--~iIY~~i--d~v------------~~~~~g~l~p~~~e~~~G~a~v~~~f~~~k~g~iag-c~v~~g~ 772 (839)
T PRK05306 710 EQEGVDIRYY--SIIYDLI--DDV------------KAAMSGMLEPEYEEEIIGQAEVREVFKVSKVGTIAG-CMVTEGK 772 (839)
T ss_pred HHCCCEEEEE--CHHHHHH--HHH------------HHHHHCCCCCCEEEEEEEEEEEEEEEECCCCCEEEE-EEEEECE
T ss_conf 9839818992--5688799--999------------999844899732789979999745797588736888-9987188
Q ss_pred EECCCCCC-CE-EEEEEEECHHHHHHHHHHHHHHHCCCEE--EEEEEECCCEECCEE
Q ss_conf 42443368-36-9999996043332204687676357418--889854354643667
Q gi|254780321|r 438 QIDMSHLD-NR-AMIVYELPLNEVIFDFYDRLKSVSKGYA--SFDYNVIDYRDSDLV 490 (606)
Q Consensus 438 ~~~m~~~~-~~-~~i~~~vPl~Eli~~f~~~LkS~T~G~a--s~~ye~~~Y~~~dlv 490 (606)
+..-...- -| -.+.|+=.+.-| --|-|..+....||- ..=-.|..++++|+.
T Consensus 773 i~~~~~~r~~r~~~~~~~g~~~sl-~~~k~~v~ev~~g~ecgi~~~~~~~~~~gd~i 828 (839)
T PRK05306 773 VKRNAKVRVLRDGVVIYEGELESL-KRFKDDVKEVRAGYECGIGLENYNDIKEGDII 828 (839)
T ss_pred EECCCCEEEEECCEEEEEEEEHHH-HHHHHCCCHHCCCCCCEEEECCCCCCCCCCEE
T ss_conf 964992799879989996263664-11020312323894252673373577669889
No 57
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2e-43 Score=311.04 Aligned_cols=265 Identities=25% Similarity=0.410 Sum_probs=204.0
Q ss_pred CEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCC-----CEEECCCHHHHHHCCEEEEEEEEEEEECCCCCEEEEEEEEC
Q ss_conf 3179998013898778899999982980544443-----11305867798719505232799997437884389999617
Q gi|254780321|r 11 IRNFSIVAHIDHGKSTLADRFIQHCRGLTEREMS-----SQVLDNMDIERERGITIKAQTVRLNYTSTDAKDYQLNLIDT 85 (606)
Q Consensus 11 IRN~~IiaHvDhGKTTL~d~lL~~tg~i~~~~~~-----~~vlD~~~~EreRGITIka~~~~~~~~~~~~~~y~iNlIDT 85 (606)
-=|++.|||+|||||||+-++ |+...+.... ++ .|..++|||||||| ++..+.|...+ + ....+||
T Consensus 12 hVNigtiGHvdHGKTTLtaAi---t~~la~~~~~~~~~y~~-id~aPeEk~rGITI--ntahveyet~~-r--hyahVDc 82 (394)
T COG0050 12 HVNVGTIGHVDHGKTTLTAAI---TTVLAKKGGAEAKAYDQ-IDNAPEEKARGITI--NTAHVEYETAN-R--HYAHVDC 82 (394)
T ss_pred EEEEEEECCCCCCHHHHHHHH---HHHHHHHCCCCCCCHHH-HHCCCHHHHCCCEE--CCCEEEEECCC-C--EEEECCC
T ss_conf 147878614247635289999---99998632401033344-30482676457254--01005886388-1--4886168
Q ss_pred CCCCHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCC-EEEEECCCCCCC-C-CCCCHHHHHHHHH---H
Q ss_conf 87300279999999730268999986878865589999999970996-799832678875-3-2113388877555---3
Q gi|254780321|r 86 PGHVDFTYEVSRSLSACEGSLLVVDATQGVEAQTLANVYQAIDNNHE-IITVLNKADLPS-A-DPDRVKKQIEETI---G 159 (606)
Q Consensus 86 PGH~DF~~EV~r~l~a~dgaiLvVdA~~Gvq~QT~~~~~~A~~~~l~-~I~viNKiD~~~-A-~~e~v~~ei~~~~---g 159 (606)
|||+|+.--..-+-+-.|||||||+|++|+||||++|..+|.+.|.| +++|+||+|+.+ . ..|.|..|+.|++ |
T Consensus 83 PGHaDYvKNMItgAaqmDgAILVVsA~dGpmPqTrEHiLlarqvGvp~ivvflnK~Dmvdd~ellelVemEvreLLs~y~ 162 (394)
T COG0050 83 PGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLARQVGVPYIVVFLNKVDMVDDEELLELVEMEVRELLSEYG 162 (394)
T ss_pred CCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCC
T ss_conf 97489999876407753762899984789998605642012342885799997422366868999999999999999739
Q ss_pred HHHHH--HHHHHHHCCC--------CCCHHHHHHHHHHHCCCCHHHHHCCCCCCCCCEEECCCCCEEEEEEECCCCCCCC
Q ss_conf 22321--0001110022--------3200678776321000111122012331012101147572599998169873558
Q gi|254780321|r 160 ISTED--ALLVSAKTGE--------GIPLLLERIVQQLPSPTSPEGANAPLKALLIDSWYNSYLGVMVLVRIINGQLTKG 229 (606)
Q Consensus 160 ~~~~~--ii~vSAktG~--------GV~~LLd~Iv~~iP~P~~~~~~~~Pl~alVfds~~D~~~G~I~~~RV~sG~lk~G 229 (606)
++.++ ++..||..-. .|.+|||++-+|+|.|. ++.+.||.|.|-|.+.-..+|.++++||..|+|+.|
T Consensus 163 f~gd~~Pii~gSal~ale~~~~~~~~i~eLm~avd~yip~Pe--r~~dkPflmpvEdvfsIsgrgtvvtGrVeRG~lkvg 240 (394)
T COG0050 163 FPGDDTPIIRGSALKALEGDAKWEAKIEELMDAVDSYIPTPE--RDIDKPFLMPVEDVFSISGRGTVVTGRVERGILKVG 240 (394)
T ss_pred CCCCCCCEEECHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCC--CCCCCCCCCCCEEEEEECCCEEEEEEEEEEEEECCC
T ss_conf 998776334112333103772167899999999985489998--655665201010068975751689878840124158
Q ss_pred CEEEEECCCCCCCCCCCCCCCCCEEEEHHCCCCC-HHHHHHCCCCCCCCCCCCEECCCCC
Q ss_conf 4588733556421012223355412401012471-2332201100244445420004667
Q gi|254780321|r 230 QSIRLMGTNAKYQVERIGILTPKMIDIEALYPGE-IGVMIASIKEVSHTRVGDTITDDSS 288 (606)
Q Consensus 230 d~I~~~~~g~~~~v~~ig~~~~~~~~v~~l~aGd-VG~ii~gik~l~~~~vGDTl~~~~~ 288 (606)
+.+.+..-+...+..--|+ .+.++..++..||| +|++..|++ -+++..|-.|+.+..
T Consensus 241 ~eveivG~~~~~kttvtgv-emfrk~ld~~~aGdnvg~llRg~~-r~~veRGqvLakpgs 298 (394)
T COG0050 241 EEVEIVGIKETQKTTVTGV-EMFRKLLDEGQAGDNVGVLLRGVK-REDVERGQVLAKPGS 298 (394)
T ss_pred CEEEEECCCCCCEEEEEHH-HHHHHHHHCCCCCCCCCEEEEECC-CCCEECCEEECCCCC
T ss_conf 7799725645530488769-999988740466898526897211-133531207606886
No 58
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=100.00 E-value=9e-42 Score=299.90 Aligned_cols=160 Identities=26% Similarity=0.393 Sum_probs=133.4
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCCC-------C---------CEEECCCHHHHHHCCEEEEEEEEEEEECCCCC
Q ss_conf 7999801389877889999998298054444-------3---------11305867798719505232799997437884
Q gi|254780321|r 13 NFSIVAHIDHGKSTLADRFIQHCRGLTEREM-------S---------SQVLDNMDIERERGITIKAQTVRLNYTSTDAK 76 (606)
Q Consensus 13 N~~IiaHvDhGKTTL~d~lL~~tg~i~~~~~-------~---------~~vlD~~~~EreRGITIka~~~~~~~~~~~~~ 76 (606)
.|+++||||||||||++|||+.+|.+..+.. . ..+||+++.||||||||...... +.++
T Consensus 1 ~~vv~GHVD~GKSTL~g~LL~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~lD~~~~ErerGiTId~~~~~-----f~~~ 75 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRY-----FSTP 75 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCHHHHHHCCCCHHHHHCCCCEEEEEEE-----EEEC
T ss_conf 96999748898889999999982996789999999887541676300034346868788269794105899-----9819
Q ss_pred EEEEEEEECCCCCHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCC-EEEEECCCCCCCCCC---CCHHH
Q ss_conf 38999961787300279999999730268999986878865589999999970996-799832678875321---13388
Q gi|254780321|r 77 DYQLNLIDTPGHVDFTYEVSRSLSACEGSLLVVDATQGVEAQTLANVYQAIDNNHE-IITVLNKADLPSADP---DRVKK 152 (606)
Q Consensus 77 ~y~iNlIDTPGH~DF~~EV~r~l~a~dgaiLvVdA~~Gvq~QT~~~~~~A~~~~l~-~I~viNKiD~~~A~~---e~v~~ 152 (606)
+++++|||||||.||..++.++.+.+|+|||||||.+|+++||++|+++|...|++ +|++|||||+.+.+. +++..
T Consensus 76 ~~~~~iiDtPGH~dfi~nmi~gas~aD~ailVVda~~G~~~QT~eh~~~~~~lgi~~iIv~vNKmD~v~~~e~~f~~i~~ 155 (208)
T cd04166 76 KRKFIIADTPGHEQYTRNMVTGASTADLAILLVDARKGVLEQTRRHSYILSLLGIRHVVVAVNKMDLVDYSEEVFEEIVA 155 (208)
T ss_pred CCEEEEEECCCCHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCHHHHHHHHH
T ss_conf 92699987896288999999998637747999975888727899999999974998399999885768999899999999
Q ss_pred HHHHHH---HHHHHHHHHHHHHCCCCCC
Q ss_conf 877555---3223210001110022320
Q gi|254780321|r 153 QIEETI---GISTEDALLVSAKTGEGIP 177 (606)
Q Consensus 153 ei~~~~---g~~~~~ii~vSAktG~GV~ 177 (606)
++.+++ ++....++|+||.+|.||-
T Consensus 156 ~~~~~l~~~~~~~~~~IPiSa~~GdNi~ 183 (208)
T cd04166 156 DYLAFAAKLGIEDITFIPISALDGDNVV 183 (208)
T ss_pred HHHHHHHHCCCCCCEEEEEECCCCCCCC
T ss_conf 9999999749988719981267788878
No 59
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=100.00 E-value=4.1e-42 Score=302.20 Aligned_cols=167 Identities=28% Similarity=0.359 Sum_probs=132.4
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHCCEEEEEEEE--E----------EE--EC--CCC-
Q ss_conf 7999801389877889999998298054444311305867798719505232799--9----------97--43--788-
Q gi|254780321|r 13 NFSIVAHIDHGKSTLADRFIQHCRGLTEREMSSQVLDNMDIERERGITIKAQTVR--L----------NY--TS--TDA- 75 (606)
Q Consensus 13 N~~IiaHvDhGKTTL~d~lL~~tg~i~~~~~~~~vlD~~~~EreRGITIka~~~~--~----------~~--~~--~~~- 75 (606)
||+++||||||||||+++| +|.. .|....|+||||||+..... + .| .. ...
T Consensus 2 Ni~iiGHVDhGKSTLi~~L---~g~~---------~~~~~~e~er~it~klg~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 (203)
T cd01888 2 NIGTIGHVAHGKSTLVKAL---SGVW---------TVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPE 69 (203)
T ss_pred EEEEEEEECCCHHHHHHHH---HCCC---------HHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCHHHHCCCCCCE
T ss_conf 6999988578799999997---0851---------244078886776031114566665111212231011110124421
Q ss_pred -----------CEEEEEEEECCCCCHHHHHHHHHHHHCCEEEEEEECCCCC-CHHHHHHHHHHHHCCCC-EEEEECCCCC
Q ss_conf -----------4389999617873002799999997302689999868788-65589999999970996-7998326788
Q gi|254780321|r 76 -----------KDYQLNLIDTPGHVDFTYEVSRSLSACEGSLLVVDATQGV-EAQTLANVYQAIDNNHE-IITVLNKADL 142 (606)
Q Consensus 76 -----------~~y~iNlIDTPGH~DF~~EV~r~l~a~dgaiLvVdA~~Gv-q~QT~~~~~~A~~~~l~-~I~viNKiD~ 142 (606)
-.+++||||||||.||..++.++.+.||+|+|||||.+|+ |+||++|++++...|++ +|+++||||+
T Consensus 70 ~~~~~~~~~~~~~r~~tiiD~PGH~df~~nmi~Gas~aD~aiLvVdA~eG~~~~QT~eH~~l~~~lgv~~iIV~vNKmDl 149 (203)
T cd01888 70 CECPGCGGETKLVRHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEIMGLKHIIIVQNKIDL 149 (203)
T ss_pred EEECCCCCCCCCEEEEEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCC
T ss_conf 45314565431124799986898799999999766434766898643667750779999999998499863677507777
Q ss_pred CCCCC-CCHHHHHHHHH---HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCC
Q ss_conf 75321-13388877555---322321000111002232006787763210001
Q gi|254780321|r 143 PSADP-DRVKKQIEETI---GISTEDALLVSAKTGEGIPLLLERIVQQLPSPT 191 (606)
Q Consensus 143 ~~A~~-e~v~~ei~~~~---g~~~~~ii~vSAktG~GV~~LLd~Iv~~iP~P~ 191 (606)
...+. +...+|+.+++ +.....++|+||++|.||+.||++|++++|+|.
T Consensus 150 v~~~~~~~~~~ei~~~l~~~~~~~~~iIPiSA~~G~NI~~ll~~i~~~ip~P~ 202 (203)
T cd01888 150 VKEEQALENYEQIKKFVKGTIAENAPIIPISAQLKYNIDVLLEYIVKKIPTPP 202 (203)
T ss_pred CCHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHCCCCC
T ss_conf 88678999999999985521689985999147889799999999986782999
No 60
>PRK04004 translation initiation factor IF-2; Validated
Probab=100.00 E-value=2.1e-39 Score=284.06 Aligned_cols=211 Identities=29% Similarity=0.416 Sum_probs=160.5
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHCCEEEEEEEEEEEECC-------------CCCEEEE
Q ss_conf 999801389877889999998298054444311305867798719505232799997437-------------8843899
Q gi|254780321|r 14 FSIVAHIDHGKSTLADRFIQHCRGLTEREMSSQVLDNMDIERERGITIKAQTVRLNYTST-------------DAKDYQL 80 (606)
Q Consensus 14 ~~IiaHvDhGKTTL~d~lL~~tg~i~~~~~~~~vlD~~~~EreRGITIka~~~~~~~~~~-------------~~~~y~i 80 (606)
+||+||||||||||.|++- .|. +..++++ |||-.--+..+.+... +.+---|
T Consensus 8 vtimGHVDhGKTsLLD~iR-~t~-V~~~EaG-------------GITQhIGA~~v~~~~~~~~~~~~~~~~~~~~~ipgl 72 (592)
T PRK04004 8 VVVLGHVDHGKTTLLDKIR-GTA-VAAKEAG-------------GITQHIGATEVPIDVIEKIAGPLVKRLPLKLKIPGL 72 (592)
T ss_pred EEEECCCCCCHHHHHHHHH-CCC-CCCCCCC-------------CCCCEECEEEECCCCHHHHCCCCCCCCCCCCCCCCC
T ss_conf 9997873777636899986-287-7355577-------------623230659841231011034433443323456775
Q ss_pred EEEECCCCCHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCC-CCCCC------------
Q ss_conf 99617873002799999997302689999868788655899999999709967998326788-75321------------
Q gi|254780321|r 81 NLIDTPGHVDFTYEVSRSLSACEGSLLVVDATQGVEAQTLANVYQAIDNNHEIITVLNKADL-PSADP------------ 147 (606)
Q Consensus 81 NlIDTPGH~DF~~EV~r~l~a~dgaiLvVdA~~Gvq~QT~~~~~~A~~~~l~~I~viNKiD~-~~A~~------------ 147 (606)
.|||||||..|+.-.+|.-++||-|+|||||.+|+||||++.+.+|...+.|+|+++||||+ |++++
T Consensus 73 lfiDTPGHeaFt~mR~RGa~vtDiaILVVa~~dGv~pQT~EaI~~~k~~~vP~IVAiNKiDr~~gw~~~~~~~~~~~~~~ 152 (592)
T PRK04004 73 LFIDTPGHEAFSNLRKRGGALADIAILVVDINEGFQPQTIESLNILKSRKTPFVVAANKIDRIPGWKSVEGAPFLESFKK 152 (592)
T ss_pred EEECCCCHHHHHHHHHHCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCHHHHHHH
T ss_conf 57659965999999973674578899999778886762799999999759988999862235666776767411232231
Q ss_pred --CCHHHHHHHH----------HHHHHH------------HHHHHHHHCCCCCCHHHHHHHHHHH---CCCCHHHHHCCC
Q ss_conf --1338887755----------532232------------1000111002232006787763210---001111220123
Q gi|254780321|r 148 --DRVKKQIEET----------IGISTE------------DALLVSAKTGEGIPLLLERIVQQLP---SPTSPEGANAPL 200 (606)
Q Consensus 148 --e~v~~ei~~~----------~g~~~~------------~ii~vSAktG~GV~~LLd~Iv~~iP---~P~~~~~~~~Pl 200 (606)
+++.+++++. .|+.++ .++|+||+||.||++||+.|+...- .-.-..+++.|.
T Consensus 153 q~~~v~~~l~~~~~~vi~~l~e~G~~~e~~~~~~d~g~~v~~VpvSA~tGeGi~dLL~~i~~Laq~~l~~~Lka~~~~~a 232 (592)
T PRK04004 153 QSERVQAELEEKLYELIGELYELGFSADRFDRVSDFTKTVAIVPVSAKTGEGIPDLLMVLAGLAQRYLEEELKIEVEGPG 232 (592)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 73889999988888888999872876322145434588148997820568998999999999999999985367999986
Q ss_pred CCCCCCEEECCCCCEEEEEEECCCCCCCCCEEEEECCCC
Q ss_conf 310121011475725999981698735584588733556
Q gi|254780321|r 201 KALLIDSWYNSYLGVMVLVRIINGQLTKGQSIRLMGTNA 239 (606)
Q Consensus 201 ~alVfds~~D~~~G~I~~~RV~sG~lk~Gd~I~~~~~g~ 239 (606)
++.|..+-.|+.+|.++.+-|++|+|+.||.+.......
T Consensus 233 ~GtViEsk~dkG~G~vatVIv~~GtLk~GD~IV~g~~~G 271 (592)
T PRK04004 233 KGTVLEVKEERGLGTTLDVILYDGTLRKGDTIVVGGLDG 271 (592)
T ss_pred CEEEEEEEECCCCCCEEEEEEECCEECCCCEEEEEECCC
T ss_conf 189999986079886179999768471699999951578
No 61
>KOG0458 consensus
Probab=100.00 E-value=1.9e-38 Score=277.60 Aligned_cols=272 Identities=26% Similarity=0.380 Sum_probs=217.6
Q ss_pred CCHHHCEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCC----------------CEEECCCHHHHHHCCEEEEEEEEEE
Q ss_conf 985253179998013898778899999982980544443----------------1130586779871950523279999
Q gi|254780321|r 6 TPLSRIRNFSIVAHIDHGKSTLADRFIQHCRGLTEREMS----------------SQVLDNMDIERERGITIKAQTVRLN 69 (606)
Q Consensus 6 ~p~~~IRN~~IiaHvDhGKTTL~d~lL~~tg~i~~~~~~----------------~~vlD~~~~EreRGITIka~~~~~~ 69 (606)
.+++.--|+.++||||+|||||..+|||..|.|+.|.|. ..+||...+|||||+|. .+...
T Consensus 172 ~~~k~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm---~v~~~ 248 (603)
T KOG0458 172 SDPKDHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTM---DVKTT 248 (603)
T ss_pred CCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHCCEEE---EEEEE
T ss_conf 587661589997023454111023788873686578899999998752875302567743631245436367---75468
Q ss_pred EECCCCCEEEEEEEECCCCCHHHHHHHHHHHHCCEEEEEEECCCC-------CCHHHHHHHHHHHHCCCC-EEEEECCCC
Q ss_conf 743788438999961787300279999999730268999986878-------865589999999970996-799832678
Q gi|254780321|r 70 YTSTDAKDYQLNLIDTPGHVDFTYEVSRSLSACEGSLLVVDATQG-------VEAQTLANVYQAIDNNHE-IITVLNKAD 141 (606)
Q Consensus 70 ~~~~~~~~y~iNlIDTPGH~DF~~EV~r~l~a~dgaiLvVdA~~G-------vq~QT~~~~~~A~~~~l~-~I~viNKiD 141 (606)
|.. .+.+.+.|||+|||-||.-+.....+-+|.|+|||||+.| .-.||++|.++....|+. +|++|||||
T Consensus 249 ~fe--s~~~~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrEha~llr~Lgi~qlivaiNKmD 326 (603)
T KOG0458 249 WFE--SKSKIVTLIDAPGHKDFIPNMISGASQADVAVLVVDASTGEFESGFDPGGQTREHALLLRSLGISQLIVAINKMD 326 (603)
T ss_pred EEE--CCCEEEEEECCCCCCCCCHHHHCCCCCCCEEEEEEECCCCHHHHCCCCCCCHHHHHHHHHHCCCCEEEEEEECCC
T ss_conf 984--686169986078742355234336221566899998775433313487986589999998749525888863010
Q ss_pred CCCCCCCC---HHHHHHHH----HHHHHH--HHHHHHHHCCCCC---------------CHHHHHHHHHHHCCCCHHHHH
Q ss_conf 87532113---38887755----532232--1000111002232---------------006787763210001111220
Q gi|254780321|r 142 LPSADPDR---VKKQIEET----IGISTE--DALLVSAKTGEGI---------------PLLLERIVQQLPSPTSPEGAN 197 (606)
Q Consensus 142 ~~~A~~e~---v~~ei~~~----~g~~~~--~ii~vSAktG~GV---------------~~LLd~Iv~~iP~P~~~~~~~ 197 (606)
..+++-++ +...+..+ +|+..+ ..+||||.+|.|+ ..||++|-. +-+|.. ..+
T Consensus 327 ~V~Wsq~RF~eIk~~l~~fL~~~~gf~es~v~FIPiSGl~GeNL~k~~~~~~l~~WY~Gp~LL~~id~-~~~p~~--~~~ 403 (603)
T KOG0458 327 LVSWSQDRFEEIKNKLSSFLKESCGFKESSVKFIPISGLSGENLIKIEQENELSQWYKGPTLLSQIDS-FKIPER--PID 403 (603)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHH-CCCCCC--CCC
T ss_conf 12753889999999899999985285047765695546567762123341355665338808888861-368887--666
Q ss_pred CCCCCCCCCEEECCCCCEEEEEEECCCCCCCCCEEEEECCCCCCCCCCCCCCCCCEEEEHHCCCCCHHHHHHCCC--CCC
Q ss_conf 123310121011475725999981698735584588733556421012223355412401012471233220110--024
Q gi|254780321|r 198 APLKALLIDSWYNSYLGVMVLVRIINGQLTKGQSIRLMGTNAKYQVERIGILTPKMIDIEALYPGEIGVMIASIK--EVS 275 (606)
Q Consensus 198 ~Pl~alVfds~~D~~~G~I~~~RV~sG~lk~Gd~I~~~~~g~~~~v~~ig~~~~~~~~v~~l~aGdVG~ii~gik--~l~ 275 (606)
.||++-|.|++-.+--|...+|||.+|.|..||+|+++.+.....|..+- ....+...+.||| +|..++. .+.
T Consensus 404 kPl~ltIsdi~~~~~~~~~i~gkiesG~iq~gqkl~i~~s~e~~~vk~l~---~~~~~~~~a~AGD--~Vsl~L~~i~~n 478 (603)
T KOG0458 404 KPLRLTISDIYPLPSSGVSISGKIESGYIQPGQKLYIMTSREDATVKGLT---SNDEPKTWAVAGD--NVSLKLPGILPN 478 (603)
T ss_pred CCEEEEHHHEEECCCCEEEEEEEEECCCCCCCCEEEEECCCCEEEEEEEE---CCCCCCEEEEECC--EEEEECCCCCHH
T ss_conf 77487830054358870689999721421359989983575307998554---3898621576177--899853765764
Q ss_pred CCCCCCEEC-CCCCCC
Q ss_conf 444542000-466785
Q gi|254780321|r 276 HTRVGDTIT-DDSSPT 290 (606)
Q Consensus 276 ~~~vGDTl~-~~~~p~ 290 (606)
.+++||++| .+..|.
T Consensus 479 ~v~~g~i~~~~~~~~i 494 (603)
T KOG0458 479 LVQVGDIADSGPQFPI 494 (603)
T ss_pred HCCCCEEEECCCCCCC
T ss_conf 5355204522787543
No 62
>KOG1145 consensus
Probab=100.00 E-value=1.8e-38 Score=277.70 Aligned_cols=247 Identities=28% Similarity=0.406 Sum_probs=193.7
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHCCEEEEEEEEEEEECCCCCEEEEEEEECCCCCHHH
Q ss_conf 79998013898778899999982980544443113058677987195052327999974378843899996178730027
Q gi|254780321|r 13 NFSIVAHIDHGKSTLADRFIQHCRGLTEREMSSQVLDNMDIERERGITIKAQTVRLNYTSTDAKDYQLNLIDTPGHVDFT 92 (606)
Q Consensus 13 N~~IiaHvDhGKTTL~d~lL~~tg~i~~~~~~~~vlD~~~~EreRGITIka~~~~~~~~~~~~~~y~iNlIDTPGH~DF~ 92 (606)
=+-|.||||||||||.|+|= -..+...+.+ |||-.--+.++.. .+|+ .|.|+|||||+-|+
T Consensus 155 VVTiMGHVDHGKTTLLD~lR--ks~VAA~E~G-------------GITQhIGAF~V~~--p~G~--~iTFLDTPGHaAF~ 215 (683)
T KOG1145 155 VVTIMGHVDHGKTTLLDALR--KSSVAAGEAG-------------GITQHIGAFTVTL--PSGK--SITFLDTPGHAAFS 215 (683)
T ss_pred EEEEEECCCCCHHHHHHHHH--HCCEEHHHCC-------------CCCCEECEEEEEC--CCCC--EEEEECCCCHHHHH
T ss_conf 69986013577001998874--0722013237-------------7100002299963--8997--78875687478899
Q ss_pred HHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHH------HHH
Q ss_conf 99999997302689999868788655899999999709967998326788753211338887755532232------100
Q gi|254780321|r 93 YEVSRSLSACEGSLLVVDATQGVEAQTLANVYQAIDNNHEIITVLNKADLPSADPDRVKKQIEETIGISTE------DAL 166 (606)
Q Consensus 93 ~EV~r~l~a~dgaiLvVdA~~Gvq~QT~~~~~~A~~~~l~~I~viNKiD~~~A~~e~v~~ei~~~~g~~~~------~ii 166 (606)
....|.-++.|-++|||.|.+||||||.+....|...+.|+|+.|||||+|+|+|++++.|+.. .|+..+ +++
T Consensus 216 aMRaRGA~vtDIvVLVVAadDGVmpQT~EaIkhAk~A~VpiVvAinKiDkp~a~pekv~~eL~~-~gi~~E~~GGdVQvi 294 (683)
T KOG1145 216 AMRARGANVTDIVVLVVAADDGVMPQTLEAIKHAKSANVPIVVAINKIDKPGANPEKVKRELLS-QGIVVEDLGGDVQVI 294 (683)
T ss_pred HHHHCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHH-CCCCHHHCCCCEEEE
T ss_conf 9986268644479999972677567689999988765997899984367899898999999987-693277707823699
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHCCCCHHHHHCCCCCCCCCEEECCCCCEEEEEEECCCCCCCCCEEEEECCCCC-CCCCC
Q ss_conf 01110022320067877632100011112201233101210114757259999816987355845887335564-21012
Q gi|254780321|r 167 LVSAKTGEGIPLLLERIVQQLPSPTSPEGANAPLKALLIDSWYNSYLGVMVLVRIINGQLTKGQSIRLMGTNAK-YQVER 245 (606)
Q Consensus 167 ~vSAktG~GV~~LLd~Iv~~iP~P~~~~~~~~Pl~alVfds~~D~~~G~I~~~RV~sG~lk~Gd~I~~~~~g~~-~~v~~ 245 (606)
++||++|.|++.|.++|+....--.-..+|++|+++.|..|..|+.+|.++++-|..|+|++|+-+.. |+. .++..
T Consensus 295 piSAl~g~nl~~L~eaill~Ae~mdLkA~p~g~~eg~VIES~vdkg~G~~aT~iVkrGTLkKG~vlV~---G~~w~KVr~ 371 (683)
T KOG1145 295 PISALTGENLDLLEEAILLLAEVMDLKADPKGPAEGWVIESSVDKGRGPVATVIVKRGTLKKGSVLVA---GKSWCKVRA 371 (683)
T ss_pred EEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEECCCCCCEEEEEEECCCCCCCCEEEE---ECHHHHHHH
T ss_conf 86511479868999999999998641168899712899986413775642699995362315658997---021443344
Q ss_pred CCCCCCCEEEEHHCCCCCHHHHHHCCCCCCCCCCCCEECCCC
Q ss_conf 223355412401012471233220110024444542000466
Q gi|254780321|r 246 IGILTPKMIDIEALYPGEIGVMIASIKEVSHTRVGDTITDDS 287 (606)
Q Consensus 246 ig~~~~~~~~v~~l~aGdVG~ii~gik~l~~~~vGDTl~~~~ 287 (606)
.|.-+.++++++.++.-- =|.|.+++- ..||-+...+
T Consensus 372 --l~D~nGk~i~~A~Ps~pv-~V~GwkdlP--~aGD~vleVe 408 (683)
T KOG1145 372 --LFDHNGKPIDEATPSQPV-EVLGWKDLP--IAGDEVLEVE 408 (683)
T ss_pred --HHHCCCCCCCCCCCCCCE-EEECCCCCC--CCCCEEEEEE
T ss_conf --552379792214899834-764246799--8875489971
No 63
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2e-38 Score=277.38 Aligned_cols=209 Identities=33% Similarity=0.472 Sum_probs=173.7
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHCCEEEEEEEEEEEECCCCCEEEEEEEECCCCCHHHH
Q ss_conf 99980138987788999999829805444431130586779871950523279999743788438999961787300279
Q gi|254780321|r 14 FSIVAHIDHGKSTLADRFIQHCRGLTEREMSSQVLDNMDIERERGITIKAQTVRLNYTSTDAKDYQLNLIDTPGHVDFTY 93 (606)
Q Consensus 14 ~~IiaHvDhGKTTL~d~lL~~tg~i~~~~~~~~vlD~~~~EreRGITIka~~~~~~~~~~~~~~y~iNlIDTPGH~DF~~ 93 (606)
++|+||||||||||.|.+= ...+..++.+ |||-.--+..+.+.. .+.-.|.|||||||.-|+.
T Consensus 8 VtimGHVDHGKTtLLD~IR--~t~Va~~EaG-------------GITQhIGA~~v~~~~--~~~~~itFiDTPGHeAFt~ 70 (509)
T COG0532 8 VTIMGHVDHGKTTLLDKIR--KTNVAAGEAG-------------GITQHIGAYQVPLDV--IKIPGITFIDTPGHEAFTA 70 (509)
T ss_pred EEEECCCCCCCCCHHHHHH--CCCCCCCCCC-------------CEEEEEEEEEEEECC--CCCCEEEEECCCCHHHHHH
T ss_conf 9996743588420166674--1764356678-------------500174349998646--8865289974895788887
Q ss_pred HHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHH------HHH
Q ss_conf 99999973026899998687886558999999997099679983267887532113388877555322321------000
Q gi|254780321|r 94 EVSRSLSACEGSLLVVDATQGVEAQTLANVYQAIDNNHEIITVLNKADLPSADPDRVKKQIEETIGISTED------ALL 167 (606)
Q Consensus 94 EV~r~l~a~dgaiLvVdA~~Gvq~QT~~~~~~A~~~~l~~I~viNKiD~~~A~~e~v~~ei~~~~g~~~~~------ii~ 167 (606)
-..|.-++||-|+|||+|.+|+||||++-...|+..+.|+|+++||||+|.++|+++..|+.+. |+.+++ +++
T Consensus 71 mRaRGa~vtDIaILVVa~dDGv~pQTiEAI~hak~a~vP~iVAiNKiDk~~~np~~v~~el~~~-gl~~E~~gg~v~~Vp 149 (509)
T COG0532 71 MRARGASVTDIAILVVAADDGVMPQTIEAINHAKAAGVPIVVAINKIDKPEANPDKVKQELQEY-GLVPEEWGGDVIFVP 149 (509)
T ss_pred HHHCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHC-CCCHHHCCCCEEEEE
T ss_conf 8755775445799999756785661799999998779998999854327998878999988777-988766188149997
Q ss_pred HHHHCCCCCCHHHHHHHHHHHCCCCHHHHHCCCCCCCCCEEECCCCCEEEEEEECCCCCCCCCEEEEECCCCC
Q ss_conf 1110022320067877632100011112201233101210114757259999816987355845887335564
Q gi|254780321|r 168 VSAKTGEGIPLLLERIVQQLPSPTSPEGANAPLKALLIDSWYNSYLGVMVLVRIINGQLTKGQSIRLMGTNAK 240 (606)
Q Consensus 168 vSAktG~GV~~LLd~Iv~~iP~P~~~~~~~~Pl~alVfds~~D~~~G~I~~~RV~sG~lk~Gd~I~~~~~g~~ 240 (606)
+||++|+|+++||++|.-.----....+++.|.++.|..+--|..+|.++.+-|++|+|+.||.|........
T Consensus 150 vSA~tg~Gi~eLL~~ill~aev~elka~~~~~a~gtviE~~~dkG~G~vatviv~~GtL~~GD~iv~g~~~g~ 222 (509)
T COG0532 150 VSAKTGEGIDELLELILLLAEVLELKANPEGPARGTVIEVKLDKGLGPVATVIVQDGTLKKGDIIVAGGEYGR 222 (509)
T ss_pred EECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCCCEEEEEEECCEEECCCEEEECCCCCC
T ss_conf 4324787979999999988899864428898724999999862688752899996484744999998378773
No 64
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=7.4e-38 Score=273.62 Aligned_cols=251 Identities=28% Similarity=0.412 Sum_probs=209.5
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHCCEEEEEEEEEEEECCCCCEEEEEEEECCCCCHHH
Q ss_conf 79998013898778899999982980544443113058677987195052327999974378843899996178730027
Q gi|254780321|r 13 NFSIVAHIDHGKSTLADRFIQHCRGLTEREMSSQVLDNMDIERERGITIKAQTVRLNYTSTDAKDYQLNLIDTPGHVDFT 92 (606)
Q Consensus 13 N~~IiaHvDhGKTTL~d~lL~~tg~i~~~~~~~~vlD~~~~EreRGITIka~~~~~~~~~~~~~~y~iNlIDTPGH~DF~ 92 (606)
+|+..||||||||||..++ ||.. .|..++|++||||| .+.|.+.+-.+|.+.|||+|||.||.
T Consensus 2 ii~t~GhidHgkT~L~~al---tg~~---------~d~l~EekKRG~Ti-----Dlg~~y~~~~d~~~~fIDvpgh~~~i 64 (447)
T COG3276 2 IIGTAGHIDHGKTTLLKAL---TGGV---------TDRLPEEKKRGITI-----DLGFYYRKLEDGVMGFIDVPGHPDFI 64 (447)
T ss_pred EEEEEEEEECCCHHHHHHH---CCCC---------CCCCHHHHHCCCEE-----EEEEEECCCCCCCEEEEECCCCHHHH
T ss_conf 6997400201430223330---2553---------32054566158468-----42057325777736886189847889
Q ss_pred HHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCC-EEEEECCCCCCC-CCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999730268999986878865589999999970996-799832678875-32113388877555322321000111
Q gi|254780321|r 93 YEVSRSLSACEGSLLVVDATQGVEAQTLANVYQAIDNNHE-IITVLNKADLPS-ADPDRVKKQIEETIGISTEDALLVSA 170 (606)
Q Consensus 93 ~EV~r~l~a~dgaiLvVdA~~Gvq~QT~~~~~~A~~~~l~-~I~viNKiD~~~-A~~e~v~~ei~~~~g~~~~~ii~vSA 170 (606)
.-...++...|.|+|||+|.+|+++||.+|+......|++ .|+|++|+|+.+ ++.+.+.++|...+.+....++++||
T Consensus 65 ~~miag~~~~d~alLvV~~deGl~~qtgEhL~iLdllgi~~giivltk~D~~d~~r~e~~i~~Il~~l~l~~~~i~~~s~ 144 (447)
T COG3276 65 SNLLAGLGGIDYALLVVAADEGLMAQTGEHLLILDLLGIKNGIIVLTKADRVDEARIEQKIKQILADLSLANAKIFKTSA 144 (447)
T ss_pred HHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCC
T ss_conf 99985405774589998475576643688999998619873289996223446788999999998650200032301101
Q ss_pred HCCCCCCHHHHHHHHHHHCCCCHHHHHCCCCCCCCCEEEC-CCCCEEEEEEECCCCCCCCCEEEEECCCCCCCCCCCCCC
Q ss_conf 0022320067877632100011112201233101210114-757259999816987355845887335564210122233
Q gi|254780321|r 171 KTGEGIPLLLERIVQQLPSPTSPEGANAPLKALLIDSWYN-SYLGVMVLVRIINGQLTKGQSIRLMGTNAKYQVERIGIL 249 (606)
Q Consensus 171 ktG~GV~~LLd~Iv~~iP~P~~~~~~~~Pl~alVfds~~D-~~~G~I~~~RV~sG~lk~Gd~I~~~~~g~~~~v~~ig~~ 249 (606)
++|.||++|=+.|.+..-.+ ..+.+.||+..| |..|. ...|.|++|.++||+++.||++++.+.|+..+|..+..
T Consensus 145 ~~g~Gi~~Lk~~l~~L~~~~--e~d~~~~fri~I-DraFtVKGvGTVVtGtv~sG~V~v~D~L~l~p~~k~v~VRsIq~- 220 (447)
T COG3276 145 KTGRGIEELKNELIDLLEEI--ERDEQKPFRIAI-DRAFTVKGVGTVVTGTVLSGEVKVGDKLYLSPINKEVRVRSIQA- 220 (447)
T ss_pred CCCCCHHHHHHHHHHHHHHH--HHCCCCCEEEEE-EEEEEECCCCEEEEEEEEEEEEEECCEEEEECCCCEEEEEEEEE-
T ss_conf 25787799999998752005--540478659997-55799513317998678643588788899905897689986320-
Q ss_pred CCCEEEEHHCCCCC-HHHHHHCCCCCCCCCCCCEECCCC
Q ss_conf 55412401012471-233220110024444542000466
Q gi|254780321|r 250 TPKMIDIEALYPGE-IGVMIASIKEVSHTRVGDTITDDS 287 (606)
Q Consensus 250 ~~~~~~v~~l~aGd-VG~ii~gik~l~~~~vGDTl~~~~ 287 (606)
+.++++++.||+ ||....|+ ..+++.-||.|.+++
T Consensus 221 --~d~d~~~a~AG~RVglaL~~v-~~eei~RG~~L~~~~ 256 (447)
T COG3276 221 --HDVDVEEAKAGQRVGLALKGV-EKEEIERGDWLLKPE 256 (447)
T ss_pred --CCCCHHHCCCCCEEEEECCCC-CHHHHHCCCEECCCC
T ss_conf --686455501225145423788-778851122751577
No 65
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.8e-37 Score=268.84 Aligned_cols=290 Identities=23% Similarity=0.343 Sum_probs=212.6
Q ss_pred CEEEEEECCCCCCHHHHHHHHHHHCCCCCCC-------CC---CC--------EEECCCHHHHHHCCEEEEEEEEEEEEC
Q ss_conf 3179998013898778899999982980544-------44---31--------130586779871950523279999743
Q gi|254780321|r 11 IRNFSIVAHIDHGKSTLADRFIQHCRGLTER-------EM---SS--------QVLDNMDIERERGITIKAQTVRLNYTS 72 (606)
Q Consensus 11 IRN~~IiaHvDhGKTTL~d~lL~~tg~i~~~-------~~---~~--------~vlD~~~~EreRGITIka~~~~~~~~~ 72 (606)
.-+|.-.||||+|||||..||||.|..+-+. ++ +. -++|.++.|||.|||| .+...|+.
T Consensus 6 lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITI---DVAYRyFs 82 (431)
T COG2895 6 LLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITI---DVAYRYFS 82 (431)
T ss_pred CEEEEEECCCCCCCHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEE---EEEEEECC
T ss_conf 136897535368602324465531011057799987521312367787545256332568888649659---98764103
Q ss_pred CCCCEEEEEEEECCCCCHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCC-EEEEECCCCCCCCCCCCHH
Q ss_conf 788438999961787300279999999730268999986878865589999999970996-7998326788753211338
Q gi|254780321|r 73 TDAKDYQLNLIDTPGHVDFTYEVSRSLSACEGSLLVVDATQGVEAQTLANVYQAIDNNHE-IITVLNKADLPSADPDRVK 151 (606)
Q Consensus 73 ~~~~~y~iNlIDTPGH~DF~~EV~r~l~a~dgaiLvVdA~~Gvq~QT~~~~~~A~~~~l~-~I~viNKiD~~~A~~e~v~ 151 (606)
.+.++ +=+.|||||.-|.--.--.-+-||.|+|+|||.+|++.||+.|.+.+...|++ +++.+||||+.+-+-+ +.
T Consensus 83 T~KRk--FIiADTPGHeQYTRNMaTGASTadlAIlLVDAR~Gvl~QTrRHs~I~sLLGIrhvvvAVNKmDLvdy~e~-~F 159 (431)
T COG2895 83 TEKRK--FIIADTPGHEQYTRNMATGASTADLAILLVDARKGVLEQTRRHSFIASLLGIRHVVVAVNKMDLVDYSEE-VF 159 (431)
T ss_pred CCCCE--EEEECCCCHHHHHHHHHCCCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHCCCEEEEEEEEECCCCCCHH-HH
T ss_conf 66630--8984599679876422236230037999996422167776778999997287679999741012356789-99
Q ss_pred HHHH-------HHHHHHHHHHHHHHHHCCCCC------------CHHHHHHHHHHHCCCCHHHHHCCCCCCCCCEE--EC
Q ss_conf 8877-------555322321000111002232------------00678776321000111122012331012101--14
Q gi|254780321|r 152 KQIE-------ETIGISTEDALLVSAKTGEGI------------PLLLERIVQQLPSPTSPEGANAPLKALLIDSW--YN 210 (606)
Q Consensus 152 ~ei~-------~~~g~~~~~ii~vSAktG~GV------------~~LLd~Iv~~iP~P~~~~~~~~Pl~alVfds~--~D 210 (606)
++|. .-+|+.....+|+||..|.|| ..||+. .+.+..-. .....|||..|-... -+
T Consensus 160 ~~I~~dy~~fa~~L~~~~~~~IPiSAl~GDNV~~~s~~mpWY~GptLLe~-LE~v~i~~--~~~~~~~RfPVQ~V~Rp~~ 236 (431)
T COG2895 160 EAIVADYLAFAAQLGLKDVRFIPISALLGDNVVSKSENMPWYKGPTLLEI-LETVEIAD--DRSAKAFRFPVQYVNRPNL 236 (431)
T ss_pred HHHHHHHHHHHHHCCCCCCEEEECHHHCCCCCCCCCCCCCCCCCCCHHHH-HHHCCCCC--CCCCCCEEECEEEECCCCC
T ss_conf 99999999999976998524774323048753346567886468509999-74122345--5436650102288617897
Q ss_pred CCCCEEEEEEECCCCCCCCCEEEEECCCCCCCCCCCCCCCCCEEEEHHCCCCCHHHHHHCCCCCCCCCCCCEECCCCCCC
Q ss_conf 75725999981698735584588733556421012223355412401012471233220110024444542000466785
Q gi|254780321|r 211 SYLGVMVLVRIINGQLTKGQSIRLMGTNAKYQVERIGILTPKMIDIEALYPGEIGVMIASIKEVSHTRVGDTITDDSSPT 290 (606)
Q Consensus 211 ~~~G~I~~~RV~sG~lk~Gd~I~~~~~g~~~~v~~ig~~~~~~~~v~~l~aGdVG~ii~gik~l~~~~vGDTl~~~~~p~ 290 (606)
.|||- -|+|.||++++||+|.+.++|++.+|.+|-.+. -+.+++.||+. +...+.+--++..||.|+..+.+.
T Consensus 237 dfRGy--aGtiasG~v~~Gd~vvvlPsG~~s~V~~Ivt~d---g~~~~A~aG~a--Vtl~L~deidisRGd~i~~~~~~~ 309 (431)
T COG2895 237 DFRGY--AGTIASGSVKVGDEVVVLPSGKTSRVKRIVTFD---GELAQASAGEA--VTLVLADEIDISRGDLIVAADAPP 309 (431)
T ss_pred CCCCC--CEEEECCCEECCCEEEECCCCCEEEEEEEECCC---CCHHHCCCCCE--EEEEECCEEECCCCCEEECCCCCC
T ss_conf 62100--304403514059748994589703579996468---71654168842--899980002002573787068985
Q ss_pred CCCCCCCCCCCCEEEEEECCCCHHHHHHH
Q ss_conf 32364552222126642126770245788
Q gi|254780321|r 291 TSALPGFKPIQPVVFCGLFPVDATQFENL 319 (606)
Q Consensus 291 ~~~Lp~~~~~~P~v~~~i~p~~~~d~~~L 319 (606)
.+.-++..-+|+|+-.|..++.--.|
T Consensus 310 ---~~~~~f~A~vvWm~~~pl~pGr~Y~l 335 (431)
T COG2895 310 ---AVADAFDADVVWMDEEPLLPGRSYDL 335 (431)
T ss_pred ---CHHHHCCEEEEEECCCCCCCCCEEEE
T ss_conf ---52232160699843777788846888
No 66
>TIGR02034 CysN sulfate adenylyltransferase, large subunit; InterPro: IPR011779 Metabolic assimilation of sulphur from inorganic sulphate, requires sulphate activation by coupling to a nucleoside, for the production of high-energy nucleoside phosphosulphates. This pathway appears to be similar in all prokaryotic organisms. Activation is first achieved through sulphation of sulphate with ATP by sulphate adenylyltransferase (ATP sulphurylase) to produce 5'-phosphosulphate (APS), coupled by GTP hydrolysis. Subsequently, APS is phosphorylated by an APS kinase to produce 3'-phosphoadenosine-5'-phosphosulphate (PAPS) . In Escherichia coli, ATP sulphurylase is a heterodimer composed of two subunits encoded by cysD and cysN, with APS kinase encoded by cysC. These genes are located in a unidirectionally transcribed gene cluster, and have been shown to be required for the synthesis of sulphur-containing amino acids . Homologous to this E. coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulphurase and APS kinase activity, yet are involved in Nod factor sulphation, and sulphation of other macromolecules . With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulphurase) and cysC (APS kinase) , .; GO: 0016772 transferase activity transferring phosphorus-containing groups.
Probab=100.00 E-value=1e-37 Score=272.68 Aligned_cols=286 Identities=24% Similarity=0.366 Sum_probs=209.1
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCCC-------CC---CC--------EEECCCHHHHHHCCEEEEEEEEEEEECCCC
Q ss_conf 9998013898778899999982980544-------44---31--------130586779871950523279999743788
Q gi|254780321|r 14 FSIVAHIDHGKSTLADRFIQHCRGLTER-------EM---SS--------QVLDNMDIERERGITIKAQTVRLNYTSTDA 75 (606)
Q Consensus 14 ~~IiaHvDhGKTTL~d~lL~~tg~i~~~-------~~---~~--------~vlD~~~~EreRGITIka~~~~~~~~~~~~ 75 (606)
|+-.|=||-|||||..|||+.|+.|.+- ++ +. =++|.++-|||.|||| -|+..|+.++.
T Consensus 3 flTCGSVDDGKSTLIGRLLhDtK~i~eDQL~~l~~DS~~~G~~G~~iD~ALLVDGL~AEREQGITI---DVAYRYFsT~K 79 (411)
T TIGR02034 3 FLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGEEIDLALLVDGLQAEREQGITI---DVAYRYFSTDK 79 (411)
T ss_pred EEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCEE---EEEECCCCCCC
T ss_conf 352054458731022222555521689999998852255347887652341330677443248612---13313257787
Q ss_pred CEEEEEEEECCCCCHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCC-EEEEECCCCCCCCCCCCHHHHH
Q ss_conf 438999961787300279999999730268999986878865589999999970996-7998326788753211338887
Q gi|254780321|r 76 KDYQLNLIDTPGHVDFTYEVSRSLSACEGSLLVVDATQGVEAQTLANVYQAIDNNHE-IITVLNKADLPSADPDRVKKQI 154 (606)
Q Consensus 76 ~~y~iNlIDTPGH~DF~~EV~r~l~a~dgaiLvVdA~~Gvq~QT~~~~~~A~~~~l~-~I~viNKiD~~~A~~e~v~~ei 154 (606)
++|. +=|||||.=++=-.--.-+-||-|||+|||.+|+..||+.|.+.|-.+|++ +|++||||||.+-+ ++|-++|
T Consensus 80 RkFI--vADTPGHEQYTRNMATGAST~dlAvlLvDAR~Gvl~QTRRHs~i~sLLGIrh~VlAVNKmDLvdyd-~~vF~~I 156 (411)
T TIGR02034 80 RKFI--VADTPGHEQYTRNMATGASTADLAVLLVDARKGVLEQTRRHSYIASLLGIRHVVLAVNKMDLVDYD-EEVFENI 156 (411)
T ss_pred CCEE--EECCCCCCCCCCCCCHHCCCCCEEEEEEEHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCC-HHHHHHH
T ss_conf 6178--840855941544300001311246655421021345677999998860453899999701114765-7889999
Q ss_pred HH-------HH-HHHHHHHHHHHHHCCCCCC-H------------HHHHHHHHHHCCCCHHHHHCCCCCCCCCEE--EC-
Q ss_conf 75-------55-3223210001110022320-0------------678776321000111122012331012101--14-
Q gi|254780321|r 155 EE-------TI-GISTEDALLVSAKTGEGIP-L------------LLERIVQQLPSPTSPEGANAPLKALLIDSW--YN- 210 (606)
Q Consensus 155 ~~-------~~-g~~~~~ii~vSAktG~GV~-~------------LLd~Iv~~iP~P~~~~~~~~Pl~alVfds~--~D- 210 (606)
++ -+ |+..-.+||.||+.|.||- . ||+. .|.+.--.+ .-.+.|||.+|--.. .-
T Consensus 157 ~~~y~~fa~~L~g~~~~~~iP~SAL~GdNv~y~~S~~MpWY~GPtLle~-LEtv~~~~G-~~~~~~lRfPVQyVnRPn~t 234 (411)
T TIGR02034 157 KKDYLAFAEQLAGVRDVTFIPLSALKGDNVVYSRSESMPWYSGPTLLEH-LETVEVERG-DAQDLPLRFPVQYVNRPNLT 234 (411)
T ss_pred HHHHHHHHHHCCCCCEEEEEEEECCCCCCEEECCCCCCCCCCCCCHHHH-CCCCCCCCC-CCCCCCCEEEEEEEECCCCC
T ss_conf 9999999986389834799873313687402256678887578806530-040000367-42247872004565268886
Q ss_pred CCCCEEEEEEECCCCCCCCCEEEEECCCCCCCCCCCCCCCCCEEEEHHCCCCCHHHHHHCCCCCCCCCCCCEECCCCCCC
Q ss_conf 75725999981698735584588733556421012223355412401012471233220110024444542000466785
Q gi|254780321|r 211 SYLGVMVLVRIINGQLTKGQSIRLMGTNAKYQVERIGILTPKMIDIEALYPGEIGVMIASIKEVSHTRVGDTITDDSSPT 290 (606)
Q Consensus 211 ~~~G~I~~~RV~sG~lk~Gd~I~~~~~g~~~~v~~ig~~~~~~~~v~~l~aGdVG~ii~gik~l~~~~vGDTl~~~~~p~ 290 (606)
.|||= -|-|.||++++||+|++.++|.+.+|.+|-.|.+ ++++|.||| +|+..+++-=|+.-||-|...+.+
T Consensus 235 dFRGy--aGt~asG~v~~Gd~v~vlPSG~~srV~rIVt~dg---~l~~A~aG~--AvTL~L~~eiDisRGDll~~~D~~- 306 (411)
T TIGR02034 235 DFRGY--AGTIASGSVKVGDEVVVLPSGRSSRVARIVTFDG---DLEQAVAGQ--AVTLVLDDEIDISRGDLLAAADSA- 306 (411)
T ss_pred CCCCH--HHHEECCEECCCCEEEEEECCCEEEEEEEEECCC---CHHHCCCCC--EEEEEEECEEEEECCHHHHCCCCC-
T ss_conf 66522--2310225534598899962796443558870465---330066875--389986000433200221224677-
Q ss_pred CCCCCCCCCCCCEEEEEECCCCHHHHH
Q ss_conf 323645522221266421267702457
Q gi|254780321|r 291 TSALPGFKPIQPVVFCGLFPVDATQFE 317 (606)
Q Consensus 291 ~~~Lp~~~~~~P~v~~~i~p~~~~d~~ 317 (606)
|-+.-++.--.|+|.=.|..++.--
T Consensus 307 --p~~~~~F~a~lVWm~~~~l~PG~~Y 331 (411)
T TIGR02034 307 --PEVADQFAATLVWMADEPLLPGRSY 331 (411)
T ss_pred --CCCCHHHEEEEEEECCCCCCCCCEE
T ss_conf --8701200125662011345889537
No 67
>TIGR00485 EF-Tu translation elongation factor Tu; InterPro: IPR004541 Translation elongation factors are responsible for two main processes during protein synthesis on the ribosome , , . EF1A (or EF-Tu) is responsible for the selection and binding of the cognate aminoacyl-tRNA to the A-site (acceptor site) of the ribosome. EF2 (or EF-G) is responsible for the translocation of the peptidyl-tRNA from the A-site to the P-site (peptidyl-tRNA site) of the ribosome, thereby freeing the A-site for the next aminoacyl-tRNA to bind. Elongation factors are responsible for achieving accuracy of translation and both EF1A and EF2 are remarkably conserved throughout evolution. EF1A (also known as EF-1alpha or EF-Tu) is a G-protein. It forms a ternary complex of EF1A-GTP-aminoacyltRNA. The binding of aminoacyl-tRNA stimulates GTP hydrolysis by EF1A, causing a conformational change in EF1A that causes EF1A-GDP to detach from the ribosome, leaving the aminoacyl-tRNA attached at the A-site. Only the cognate aminoacyl-tRNA can induce the required conformational change in EF1A through its tight anticodon-codon binding , . EF1A-GDP is returned to its active state, EF1A-GTP, through the action of another elongation factor, EF1B (also known as EF-Ts or EF-1beta/gamma/delta). This entry represents EF1A (or EF-Tu) proteins found primarily in bacteria, mitochondria and chloroplasts. Eukaryotic and archaeal EF1A (IPR004539 from INTERPRO) are excluded from this entry. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors . More information about these proteins can be found at Protein of the Month: Elongation Factors .; GO: 0003746 translation elongation factor activity, 0005525 GTP binding, 0006414 translational elongation, 0005622 intracellular.
Probab=100.00 E-value=4.8e-36 Score=261.45 Aligned_cols=270 Identities=23% Similarity=0.376 Sum_probs=205.6
Q ss_pred HCEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCC-CCEEECCCHHHHHHCCEEEEEEEEEEEECCCCCEEEEEEEECCCC
Q ss_conf 5317999801389877889999998298054444-311305867798719505232799997437884389999617873
Q gi|254780321|r 10 RIRNFSIVAHIDHGKSTLADRFIQHCRGLTEREM-SSQVLDNMDIERERGITIKAQTVRLNYTSTDAKDYQLNLIDTPGH 88 (606)
Q Consensus 10 ~IRN~~IiaHvDhGKTTL~d~lL~~tg~i~~~~~-~~~vlD~~~~EreRGITIka~~~~~~~~~~~~~~y~iNlIDTPGH 88 (606)
.--|++.|||+|||||||+-++-.....-..... .-.-.|..|+|++||||| ++..+.|... .+.| .-+|||||
T Consensus 11 ~h~n~GtiGhvdhGkttl~aa~~~~l~~~~~~~~~~y~~id~aPee~~rGiti--~~~~vey~~~-~rhy--ahvdCPGh 85 (394)
T TIGR00485 11 PHVNIGTIGHVDHGKTTLTAAITTVLAKEGKAAAKKYDEIDKAPEEKARGITI--NTAHVEYETE-KRHY--AHVDCPGH 85 (394)
T ss_pred CEEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCEEE--EEEEEEECCC-CCCE--EEECCCCH
T ss_conf 70333012100155057899999998751003567677652372113345156--5335542146-7515--76318862
Q ss_pred CHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCC-EEEEECCCCCCCCC--CCCHHHHHHHHH---HHHH
Q ss_conf 00279999999730268999986878865589999999970996-79983267887532--113388877555---3223
Q gi|254780321|r 89 VDFTYEVSRSLSACEGSLLVVDATQGVEAQTLANVYQAIDNNHE-IITVLNKADLPSAD--PDRVKKQIEETI---GIST 162 (606)
Q Consensus 89 ~DF~~EV~r~l~a~dgaiLvVdA~~Gvq~QT~~~~~~A~~~~l~-~I~viNKiD~~~A~--~e~v~~ei~~~~---g~~~ 162 (606)
+||.-.....-+-.|||+|||+|.+|++|||++|..+|.+.|+| +++|+||.|..+.+ .+-|..|+.+++ +++.
T Consensus 86 adyvknmitGaaqmdGailvv~~~d~~mPqt~ehill~~~vGvP~~vvflnk~d~~~~~el~~lv~~e~~~ll~~~~f~G 165 (394)
T TIGR00485 86 ADYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPKIVVFLNKVDMVDDEELLELVELEVRELLSEYDFPG 165 (394)
T ss_pred HHHHHHHHHHHHHCCCEEEEEECCCCCCCCCHHHEEEECCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 67888764101111760799952788887411210010026876578764023322427899999999999987407898
Q ss_pred HH--HHHHHHHCCC--------CCCHHHHHHHHHHHCCCCHHHHHCCCCCCCCCEEECCCCCEEEEEEECCCCCCCCCEE
Q ss_conf 21--0001110022--------3200678776321000111122012331012101147572599998169873558458
Q gi|254780321|r 163 ED--ALLVSAKTGE--------GIPLLLERIVQQLPSPTSPEGANAPLKALLIDSWYNSYLGVMVLVRIINGQLTKGQSI 232 (606)
Q Consensus 163 ~~--ii~vSAktG~--------GV~~LLd~Iv~~iP~P~~~~~~~~Pl~alVfds~~D~~~G~I~~~RV~sG~lk~Gd~I 232 (606)
++ ++..||.... -|.+|++.+-+++|.|. +..+.||-+.|-|.+.-..||.++.+||..|.++.|++|
T Consensus 166 ~~~Pi~~Gsal~al~~~~~~~~~~~~l~~~vd~~i~~P~--r~~~~~fl~~~ed~~~i~GrGtv~tGr~e~G~~~v~~~v 243 (394)
T TIGR00485 166 DDVPIVRGSALKALEGDAEWEEKILELMEAVDEYIPTPE--REVDKPFLLPIEDVFSITGRGTVVTGRVERGVVKVGEEV 243 (394)
T ss_pred CCCCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC--HHHCCCEEEEEEEEEEEECCCEEEEEEEEECEEEECCEE
T ss_conf 652256114565420036799999999999986506751--131441145531046750463478502430447644647
Q ss_pred EEECCCCCCCCCCCCCCCCCEEEEHHCCCCC-HHHHHHCCCCCCCCCCCCEECCCCC
Q ss_conf 8733556421012223355412401012471-2332201100244445420004667
Q gi|254780321|r 233 RLMGTNAKYQVERIGILTPKMIDIEALYPGE-IGVMIASIKEVSHTRVGDTITDDSS 288 (606)
Q Consensus 233 ~~~~~g~~~~v~~ig~~~~~~~~v~~l~aGd-VG~ii~gik~l~~~~vGDTl~~~~~ 288 (606)
.++.-....+..-.|+ .+.++..++..||| +|.+..|++ -.++..|..|+.+..
T Consensus 244 ~~~G~~~~~~~~vtGv-emf~k~l~~~~aG~n~G~llrG~~-~~~~~rG~v~~~P~~ 298 (394)
T TIGR00485 244 EIVGLKDTKKTTVTGV-EMFRKELDEGEAGDNVGLLLRGIK-KEEIERGMVLAKPGS 298 (394)
T ss_pred EEEEEECCCCEEEHHH-HHHHHHHHCCCCCCCEEEEEECCC-HHHCCCCEEEECCCC
T ss_conf 9987402454022147-888887411335542010110453-121015637843763
No 68
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=100.00 E-value=2.1e-34 Score=250.42 Aligned_cols=156 Identities=33% Similarity=0.395 Sum_probs=131.2
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHCCEEEEEEEEEEEECCCCCEEEEEEEECCCCCHHHH
Q ss_conf 99980138987788999999829805444431130586779871950523279999743788438999961787300279
Q gi|254780321|r 14 FSIVAHIDHGKSTLADRFIQHCRGLTEREMSSQVLDNMDIERERGITIKAQTVRLNYTSTDAKDYQLNLIDTPGHVDFTY 93 (606)
Q Consensus 14 ~~IiaHvDhGKTTL~d~lL~~tg~i~~~~~~~~vlD~~~~EreRGITIka~~~~~~~~~~~~~~y~iNlIDTPGH~DF~~ 93 (606)
+||+||+|||||||.++| +|. -.|.++.|++|||||......+.|. .++.++|||||||.+|..
T Consensus 3 VaivG~~n~GKSTL~n~L---~g~---------~~d~~~~e~~~giTi~~~~~~~~~~----~~~~i~~iDtPGh~~~~~ 66 (164)
T cd04171 3 IGTAGHIDHGKTTLIKAL---TGI---------ETDRLPEEKKRGITIDLGFAYLDLP----SGKRLGFIDVPGHEKFIK 66 (164)
T ss_pred EEEECCCCCCHHHHHHHH---HCC---------CCCCCHHHHCCCEEEEEEEEEEECC----CCCEEEEEECCCHHHHHH
T ss_conf 999926887299999998---496---------4663333334863798546878648----998999994878799999
Q ss_pred HHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCC-EEEEECCCCCCCCC-CCCHHHHHHHHH---HHHHHHHHHH
Q ss_conf 999999730268999986878865589999999970996-79983267887532-113388877555---3223210001
Q gi|254780321|r 94 EVSRSLSACEGSLLVVDATQGVEAQTLANVYQAIDNNHE-IITVLNKADLPSAD-PDRVKKQIEETI---GISTEDALLV 168 (606)
Q Consensus 94 EV~r~l~a~dgaiLvVdA~~Gvq~QT~~~~~~A~~~~l~-~I~viNKiD~~~A~-~e~v~~ei~~~~---g~~~~~ii~v 168 (606)
++.+++..+|.|+|||||.+|+++||++++..+...+++ +|+|+||||+...+ .+.+.+|+++.+ ++....++++
T Consensus 67 ~~~~~~~~aD~~llVvda~~g~~~q~~e~~~~~~~~~i~~~ivvlNK~D~v~~~~~~~~~~~i~~~l~~~~~~~~pii~i 146 (164)
T cd04171 67 NMLAGAGGIDLVLLVVAADEGIMPQTREHLEILELLGIKRGLVVLTKADLVDEDWLELVEEEIRELLAGTFLADAPIFPV 146 (164)
T ss_pred HHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEE
T ss_conf 99998742672589986177888889999999987388727873463425797899999999999997439999829994
Q ss_pred HHHCCCCCCHHHHHHHH
Q ss_conf 11002232006787763
Q gi|254780321|r 169 SAKTGEGIPLLLERIVQ 185 (606)
Q Consensus 169 SAktG~GV~~LLd~Iv~ 185 (606)
||++|.||++|+++|.+
T Consensus 147 SA~tG~Gi~eL~~~I~e 163 (164)
T cd04171 147 SAVTGEGIEELKEYLDE 163 (164)
T ss_pred ECCCCCCHHHHHHHHHH
T ss_conf 69898299999999984
No 69
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=100.00 E-value=1.3e-32 Score=238.37 Aligned_cols=157 Identities=36% Similarity=0.448 Sum_probs=128.6
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHCCEEEEEEEEEEEECCCCCEEEEEEEECCCCCHHH
Q ss_conf 79998013898778899999982980544443113058677987195052327999974378843899996178730027
Q gi|254780321|r 13 NFSIVAHIDHGKSTLADRFIQHCRGLTEREMSSQVLDNMDIERERGITIKAQTVRLNYTSTDAKDYQLNLIDTPGHVDFT 92 (606)
Q Consensus 13 N~~IiaHvDhGKTTL~d~lL~~tg~i~~~~~~~~vlD~~~~EreRGITIka~~~~~~~~~~~~~~y~iNlIDTPGH~DF~ 92 (606)
-+||+||+|||||||.++|. |. +.. .+..+|+|..-......+. .+..+.++|||||||.+|+
T Consensus 2 ~VaivG~~n~GKSTL~n~L~---~~--~~~----------~~~~~g~T~~i~~~~~~~~--~~~~~~i~~iDTPGh~~f~ 64 (168)
T cd01887 2 VVTVMGHVDHGKTTLLDKIR---KT--NVA----------AGEAGGITQHIGAFEVPAE--VLKIPGITFIDTPGHEAFT 64 (168)
T ss_pred EEEEEECCCCCHHHHHHHHH---CC--CCC----------EEECCCCEEEECEEEEEEE--ECCCCEEEEEECCCCHHHH
T ss_conf 89999489985989999985---86--750----------4516981687153999988--2588718999899816779
Q ss_pred HHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHH------HHHHHH
Q ss_conf 99999997302689999868788655899999999709967998326788753211338887755532------232100
Q gi|254780321|r 93 YEVSRSLSACEGSLLVVDATQGVEAQTLANVYQAIDNNHEIITVLNKADLPSADPDRVKKQIEETIGI------STEDAL 166 (606)
Q Consensus 93 ~EV~r~l~a~dgaiLvVdA~~Gvq~QT~~~~~~A~~~~l~~I~viNKiD~~~A~~e~v~~ei~~~~g~------~~~~ii 166 (606)
...+|+++.+|.++|||||.+|+++||++++..+.+.++|+|+|+||||+++++++++..++.++... ...+++
T Consensus 65 ~~~~~~~~~aD~~ilvvda~~g~~~~~~~~~~~l~~~~~p~ivviNKiD~~~~~~~~v~~~l~~~~~~~~~~~~~~~~iI 144 (168)
T cd01887 65 NMRARGASLTDIAILVVAADDGVMPQTIEAIKLAKAANVPFIVALNKIDKPNANPERVKNELSELGLQGEDEWGGDVQIV 144 (168)
T ss_pred HHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCHHHCCCCCEEE
T ss_conf 99999986268899998646675458999999998769978999989308987989999999997545245528987599
Q ss_pred HHHHHCCCCCCHHHHHHHHH
Q ss_conf 01110022320067877632
Q gi|254780321|r 167 LVSAKTGEGIPLLLERIVQQ 186 (606)
Q Consensus 167 ~vSAktG~GV~~LLd~Iv~~ 186 (606)
|+||++|.|+++|+++|+..
T Consensus 145 pvSA~tG~gi~~L~~~i~~~ 164 (168)
T cd01887 145 PTSAKTGEGIDDLLEAILLL 164 (168)
T ss_pred EEECCCCCCHHHHHHHHHHH
T ss_conf 99899998999999999999
No 70
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.9e-32 Score=236.05 Aligned_cols=238 Identities=27% Similarity=0.362 Sum_probs=170.0
Q ss_pred HCEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHCCEEEEEEEEEEEEC-----------------
Q ss_conf 531799980138987788999999829805444431130586779871950523279999743-----------------
Q gi|254780321|r 10 RIRNFSIVAHIDHGKSTLADRFIQHCRGLTEREMSSQVLDNMDIERERGITIKAQTVRLNYTS----------------- 72 (606)
Q Consensus 10 ~IRN~~IiaHvDhGKTTL~d~lL~~tg~i~~~~~~~~vlD~~~~EreRGITIka~~~~~~~~~----------------- 72 (606)
-=-||+.+||||||||||+-+| ||..+ |...+|-+||||||.--+......
T Consensus 9 p~vNIG~vGHVdHGKtTlv~Al---sGvwT---------~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~C~ 76 (415)
T COG5257 9 PEVNIGMVGHVDHGKTTLTKAL---SGVWT---------DRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPKCP 76 (415)
T ss_pred CCEEEEEEEECCCCHHHHEEHH---HCEEE---------ECHHHHHHCCCEEEECCCCCCEEECCCCCCCCCCCCCCCCC
T ss_conf 6147623420146624110033---13343---------02068875684798402557457577778876623478777
Q ss_pred -CC--CC-EEEEEEEECCCCCHHHHHHHHHHHHCCEEEEEEECCCC-CCHHHHHHHHHHHHCCCC-EEEEECCCCCCCCC
Q ss_conf -78--84-38999961787300279999999730268999986878-865589999999970996-79983267887532
Q gi|254780321|r 73 -TD--AK-DYQLNLIDTPGHVDFTYEVSRSLSACEGSLLVVDATQG-VEAQTLANVYQAIDNNHE-IITVLNKADLPSAD 146 (606)
Q Consensus 73 -~~--~~-~y~iNlIDTPGH~DF~~EV~r~l~a~dgaiLvVdA~~G-vq~QT~~~~~~A~~~~l~-~I~viNKiD~~~A~ 146 (606)
++ .+ .-++.|+|+|||.-...-.-..-+..|||||||+|.+- +||||++|+....-.|++ +|++-||||+.+
T Consensus 77 ~cg~~~~l~R~VSfVDaPGHe~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~AleIigik~iiIvQNKIDlV~-- 154 (415)
T COG5257 77 NCGAETELVRRVSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTREHLMALEIIGIKNIIIVQNKIDLVS-- 154 (415)
T ss_pred CCCCCCCEEEEEEEEECCCHHHHHHHHHCCHHHHCCEEEEEECCCCCCCCCHHHHHHHHHHHCCCEEEEEECCCCEEC--
T ss_conf 789973079999974079669999988602344215389995389898973187788776626533999952301115--
Q ss_pred CCCH---HHHHHHHH-H--HHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCHHHHHCCCCCCCCCEE--------ECCC
Q ss_conf 1133---88877555-3--2232100011100223200678776321000111122012331012101--------1475
Q gi|254780321|r 147 PDRV---KKQIEETI-G--ISTEDALLVSAKTGEGIPLLLERIVQQLPSPTSPEGANAPLKALLIDSW--------YNSY 212 (606)
Q Consensus 147 ~e~v---~~ei~~~~-g--~~~~~ii~vSAktG~GV~~LLd~Iv~~iP~P~~~~~~~~Pl~alVfds~--------~D~~ 212 (606)
.|+. .+||.+++ | .+...++|+||..+.||+.|+++|.+++|.|. ++.++|.+|+|..|+ .+.-
T Consensus 155 ~E~AlE~y~qIk~FvkGt~Ae~aPIIPiSA~~~~NIDal~e~i~~~IptP~--rd~~~~p~m~v~RSFDVNkPGt~~~~L 232 (415)
T COG5257 155 RERALENYEQIKEFVKGTVAENAPIIPISAQHKANIDALIEAIEKYIPTPE--RDLDKPPRMYVARSFDVNKPGTPPEEL 232 (415)
T ss_pred HHHHHHHHHHHHHHHCCCCCCCCCEEEEHHHHCCCHHHHHHHHHHHCCCCC--CCCCCCCEEEEEEECCCCCCCCCHHHC
T ss_conf 999888799999986263347995443256430587999999998689986--678999669998640358998997772
Q ss_pred CCEEEEEEECCCCCCCCCEEEEECC-----CCCCC----CCCCCCCCCCEEEEHHCCCCC
Q ss_conf 7259999816987355845887335-----56421----012223355412401012471
Q gi|254780321|r 213 LGVMVLVRIINGQLTKGQSIRLMGT-----NAKYQ----VERIGILTPKMIDIEALYPGE 263 (606)
Q Consensus 213 ~G~I~~~RV~sG~lk~Gd~I~~~~~-----g~~~~----v~~ig~~~~~~~~v~~l~aGd 263 (606)
+|-|.=+.+.+|.++.||+|.+-+- +.+.. .+++--+......++++.+|-
T Consensus 233 ~GGViGGsl~~G~l~vGDEIEIrPGi~v~k~~k~~~~pi~T~i~Sl~ag~~~~~ea~PGG 292 (415)
T COG5257 233 KGGVIGGSLVQGVLRVGDEIEIRPGIVVEKGGKTVWEPITTEIVSLQAGGEDVEEARPGG 292 (415)
T ss_pred CCCEECCEEEEEEEECCCEEEECCCEEEECCCCEEEEEEEEEEEEEEECCEEEEECCCCC
T ss_conf 474322202553685387578548817603992477871389999973776643126883
No 71
>KOG0459 consensus
Probab=99.97 E-value=2.4e-31 Score=229.86 Aligned_cols=272 Identities=23% Similarity=0.377 Sum_probs=205.8
Q ss_pred CHHHCEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCC-------C---------CEEECCCHHHHHHCCEEEEEEEEEEE
Q ss_conf 8525317999801389877889999998298054444-------3---------11305867798719505232799997
Q gi|254780321|r 7 PLSRIRNFSIVAHIDHGKSTLADRFIQHCRGLTEREM-------S---------SQVLDNMDIERERGITIKAQTVRLNY 70 (606)
Q Consensus 7 p~~~IRN~~IiaHvDhGKTTL~d~lL~~tg~i~~~~~-------~---------~~vlD~~~~EreRGITIka~~~~~~~ 70 (606)
|++.--|+..+||||+||||+-..+|+++|.+++|.. . ...||++++||++|-|+- +...|
T Consensus 75 ~pk~hvn~vfighVdagkstigg~il~ltg~Vd~Rt~ekyereake~~rEswylsW~ldtn~EeR~kgKtvE---vGrA~ 151 (501)
T KOG0459 75 YPKEHVNAVFIGHVDAGKSTIGGNILFLTGMVDKRTLEKYEREAKEKNRESWYLSWALDTNGEERDKGKTVE---VGRAY 151 (501)
T ss_pred CCCCCCEEEEEEEEECCCCCCCCEEEEEEEEECHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHCCCEEE---EEEEE
T ss_conf 877874489999996440126873678986543778999999987613332248999737601210265054---12578
Q ss_pred ECCCCCEEEEEEEECCCCCHHHHHHHHHHHHCCEEEEEEECCCCC-----C--HHHHHHHHHHHHCCCC-EEEEECCCCC
Q ss_conf 437884389999617873002799999997302689999868788-----6--5589999999970996-7998326788
Q gi|254780321|r 71 TSTDAKDYQLNLIDTPGHVDFTYEVSRSLSACEGSLLVVDATQGV-----E--AQTLANVYQAIDNNHE-IITVLNKADL 142 (606)
Q Consensus 71 ~~~~~~~y~iNlIDTPGH~DF~~EV~r~l~a~dgaiLvVdA~~Gv-----q--~QT~~~~~~A~~~~l~-~I~viNKiD~ 142 (606)
... ..-+++++|+|||.-|.-+.....+-+|-++||++|..|- + -||+.|..+|..++++ .|++|||||-
T Consensus 152 FEt--e~~~ftiLDApGHk~fv~nmI~GasqAD~~vLvisar~gefetgFerGgQTREha~Lakt~gv~~lVv~vNKMdd 229 (501)
T KOG0459 152 FET--ENKRFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDD 229 (501)
T ss_pred EEE--CCEEEEEECCCCCCCCCHHHCCCCCHHHHHHHHHHHHHCHHHCCCCCCCCHHHHHHHHHHHCCCEEEEEEEECCC
T ss_conf 871--343677631676555560003661111233201132001121031036630578999886233257999995058
Q ss_pred CCCCCC-----CHHHHHHHHH---HH---HHHHHHHHHHHCCCCCCHHHHHHH------------HHHHCCCCHHHHHCC
Q ss_conf 753211-----3388877555---32---232100011100223200678776------------321000111122012
Q gi|254780321|r 143 PSADPD-----RVKKQIEETI---GI---STEDALLVSAKTGEGIPLLLERIV------------QQLPSPTSPEGANAP 199 (606)
Q Consensus 143 ~~A~~e-----~v~~ei~~~~---g~---~~~~ii~vSAktG~GV~~LLd~Iv------------~~iP~P~~~~~~~~P 199 (606)
|..++. ++.+.+..++ |+ .+--.+|+|+.+|.++.+..+.++ +.+|.+ .+..|+|
T Consensus 230 PtvnWs~eRy~E~~~k~~~fLr~~g~n~~~d~~f~p~sg~tG~~~k~~~~s~cpwy~gp~fl~~ld~l~~~--~R~~~GP 307 (501)
T KOG0459 230 PTVNWSNERYEECKEKLQPFLRKLGFNPKPDKHFVPVSGLTGANVKDRTDSVCPWYKGPIFLEYLDELPHL--ERILNGP 307 (501)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCHHHCCCCCCCCCCCCCCCEEHHCCCCC--CCCCCCC
T ss_conf 86673056689999999999998444689984142024645555534466658842177555002026765--5468987
Q ss_pred CCCCCCCEEECCCCCEEEEEEECCCCCCCCCEEEEECCCCCCCCCCCCCCCCCEEEEHHCCCCCH-HHHHHCCCCCCCCC
Q ss_conf 33101210114757259999816987355845887335564210122233554124010124712-33220110024444
Q gi|254780321|r 200 LKALLIDSWYNSYLGVMVLVRIINGQLTKGQSIRLMGTNAKYQVERIGILTPKMIDIEALYPGEI-GVMIASIKEVSHTR 278 (606)
Q Consensus 200 l~alVfds~~D~~~G~I~~~RV~sG~lk~Gd~I~~~~~g~~~~v~~ig~~~~~~~~v~~l~aGdV-G~ii~gik~l~~~~ 278 (606)
|++.|.+-+-| .|.|.+++|.||++++||++.+|+.+..-+|.. ++. +..+++.+.+||. -.-+.|| .-.++.
T Consensus 308 ~~~pI~~Kykd--mGTvv~GKvEsGsi~kg~~lvvMPnk~~veV~~--I~~-dd~E~~~~~pGenvk~rlkgi-eeedi~ 381 (501)
T KOG0459 308 IRCPVANKYKD--MGTVVGGKVESGSIKKGQQLVVMPNKTNVEVLG--IYS-DDVETDRVAPGENVKLRLKGI-EEEDIS 381 (501)
T ss_pred EEEEHHHHCCC--CCEEEEEEECCCCEECCCEEEECCCCCCEEEEE--EEC-CCCEEEECCCCCCEEEEECCC-CHHHCC
T ss_conf 78552562055--652788786026030598479725886257898--751-652010015885158996453-354246
Q ss_pred CCCEECCCCCCCC
Q ss_conf 5420004667853
Q gi|254780321|r 279 VGDTITDDSSPTT 291 (606)
Q Consensus 279 vGDTl~~~~~p~~ 291 (606)
.|=.||++++|..
T Consensus 382 ~GfiL~~~~n~~~ 394 (501)
T KOG0459 382 PGFILCSPNNPCK 394 (501)
T ss_pred CCEEEECCCCCCC
T ss_conf 7348706898555
No 72
>KOG0461 consensus
Probab=99.96 E-value=4.5e-29 Score=214.66 Aligned_cols=250 Identities=22% Similarity=0.323 Sum_probs=189.4
Q ss_pred CHHHCEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHCCEEEEEEEEEE----EECCCCCEEEEEE
Q ss_conf 852531799980138987788999999829805444431130586779871950523279999----7437884389999
Q gi|254780321|r 7 PLSRIRNFSIVAHIDHGKSTLADRFIQHCRGLTEREMSSQVLDNMDIERERGITIKAQTVRLN----YTSTDAKDYQLNL 82 (606)
Q Consensus 7 p~~~IRN~~IiaHvDhGKTTL~d~lL~~tg~i~~~~~~~~vlD~~~~EreRGITIka~~~~~~----~~~~~~~~y~iNl 82 (606)
|+.| -|++|+||||+|||||+-+|-....+ . .-|..+.-+|||||....-..+. -.-..++..++.|
T Consensus 4 ~p~n-~N~GiLGHvDSGKTtLarals~~~ST-a-------AFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tl 74 (522)
T KOG0461 4 PPSN-LNLGILGHVDSGKTTLARALSELGST-A-------AFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTL 74 (522)
T ss_pred CCCE-EEEEEEEECCCCHHHHHHHHHHHCCH-H-------HHCCCCCCCCCCEEEEECCEEEECCCCCCCCCCCCCEEEE
T ss_conf 9720-24435740257648999999863140-3-------3224875310462674122044135723378766412699
Q ss_pred EECCCCCHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCC-----CCCCCHHHHHH--
Q ss_conf 61787300279999999730268999986878865589999999970996799832678875-----32113388877--
Q gi|254780321|r 83 IDTPGHVDFTYEVSRSLSACEGSLLVVDATQGVEAQTLANVYQAIDNNHEIITVLNKADLPS-----ADPDRVKKQIE-- 155 (606)
Q Consensus 83 IDTPGH~DF~~EV~r~l~a~dgaiLvVdA~~Gvq~QT~~~~~~A~~~~l~~I~viNKiD~~~-----A~~e~v~~ei~-- 155 (606)
||||||+...--+..+-...|-++||||+..|.|+||-+++-++...--+.++||||+|.-. +..++....+.
T Consensus 75 vDCPGHasLIRtiiggaqiiDlm~lviDv~kG~QtQtAEcLiig~~~c~klvvvinkid~lpE~qr~ski~k~~kk~~Kt 154 (522)
T KOG0461 75 VDCPGHASLIRTIIGGAQIIDLMILVIDVQKGKQTQTAECLIIGELLCKKLVVVINKIDVLPENQRASKIEKSAKKVRKT 154 (522)
T ss_pred EECCCHHHHHHHHHCCHHHHEEEEEEEEHHCCCCCCCCHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 71797088999997101200134678861017666521454437664462699995012265302456789999999977
Q ss_pred -HHHHHHH-HHHHHHHHHCC----CCCCHHHHHHHHHHHCCCCHHHHHCCCCCCCCCEEECCCCCEEEEEEECCCCCCCC
Q ss_conf -5553223-21000111002----23200678776321000111122012331012101147572599998169873558
Q gi|254780321|r 156 -ETIGIST-EDALLVSAKTG----EGIPLLLERIVQQLPSPTSPEGANAPLKALLIDSWYNSYLGVMVLVRIINGQLTKG 229 (606)
Q Consensus 156 -~~~g~~~-~~ii~vSAktG----~GV~~LLd~Iv~~iP~P~~~~~~~~Pl~alVfds~~D~~~G~I~~~RV~sG~lk~G 229 (606)
+..+++. ..|+++||+.| .++.+|.+++-+.+-.|+ +|+++||-|.|=..+.-...|.|.++.|.+|+++.|
T Consensus 155 Le~t~f~g~~PI~~vsa~~G~~~~~~i~eL~e~l~s~if~P~--Rd~~gpflm~vDHCF~IKGQGTV~TGTvl~G~~~ln 232 (522)
T KOG0461 155 LESTGFDGNSPIVEVSAADGYFKEEMIQELKEALESRIFEPK--RDEEGPFLMAVDHCFAIKGQGTVLTGTVLRGVLRLN 232 (522)
T ss_pred HHHCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCC--CCCCCCEEEEEEEEEEECCCCEEEEEEEEEEEEECC
T ss_conf 874576888852676437875406678999999997624777--688887589864257862671588634787689628
Q ss_pred CEEEEECCCCCCCCCCCCCCCCCEEEEHHCCCCC-HHHHHHC
Q ss_conf 4588733556421012223355412401012471-2332201
Q gi|254780321|r 230 QSIRLMGTNAKYQVERIGILTPKMIDIEALYPGE-IGVMIAS 270 (606)
Q Consensus 230 d~I~~~~~g~~~~v~~ig~~~~~~~~v~~l~aGd-VG~ii~g 270 (606)
+.|.+..-+.+.+|+.+. +.+.++..+.+|| +|+.++.
T Consensus 233 ~~iE~PAL~e~rkVKslq---mf~~~vtsa~~GdR~g~cVtq 271 (522)
T KOG0461 233 TEIEFPALNEKRKVKSLQ---MFKQRVTSAAAGDRAGFCVTQ 271 (522)
T ss_pred CEEEECCCCHHHHHHHHH---HHHHHHHHHHCCCCEEEEEEC
T ss_conf 688504333144444699---875120023215622434001
No 73
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.95 E-value=7.8e-28 Score=206.35 Aligned_cols=174 Identities=26% Similarity=0.297 Sum_probs=124.9
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCCC-CCCCEEECCCHHHHHHCCEEEEEEEEEEEE-------------------CC
Q ss_conf 9998013898778899999982980544-443113058677987195052327999974-------------------37
Q gi|254780321|r 14 FSIVAHIDHGKSTLADRFIQHCRGLTER-EMSSQVLDNMDIERERGITIKAQTVRLNYT-------------------ST 73 (606)
Q Consensus 14 ~~IiaHvDhGKTTL~d~lL~~tg~i~~~-~~~~~vlD~~~~EreRGITIka~~~~~~~~-------------------~~ 73 (606)
++++||||||||||..+|. +|.++.. +..-+.+.....|.|+|+|..-..--+.|. .+
T Consensus 2 v~v~GhVD~GKSTL~G~Lt--~g~lDdGrg~ar~~~~rh~hE~~~G~Tssi~~~~lgf~~~g~~~~~~~~~~~~~~~~~~ 79 (224)
T cd04165 2 VAVVGNVDAGKSTLLGVLT--QGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEIC 79 (224)
T ss_pred EEEEECCCCCHHHHHHHHH--CCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCEECCCCCCCCCCCEEEE
T ss_conf 8999485884889999985--67742221067778776189997265441156554010145320213476544220121
Q ss_pred CCCEEEEEEEECCCCCHHHHHHHHHHHH--CCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCC-CCCCH
Q ss_conf 8843899996178730027999999973--02689999868788655899999999709967998326788753-21133
Q gi|254780321|r 74 DAKDYQLNLIDTPGHVDFTYEVSRSLSA--CEGSLLVVDATQGVEAQTLANVYQAIDNNHEIITVLNKADLPSA-DPDRV 150 (606)
Q Consensus 74 ~~~~y~iNlIDTPGH~DF~~EV~r~l~a--~dgaiLvVdA~~Gvq~QT~~~~~~A~~~~l~~I~viNKiD~~~A-~~e~v 150 (606)
......+.|||+|||.+|.--..+.+.+ .|.|+|||+|.+|+++||++|+.++...++|+++||||||+... ..+++
T Consensus 80 ~~~~k~it~iD~pGH~~y~kt~i~G~~~~~~d~~~LvV~A~~G~~~~T~ehl~l~~~l~ip~~vvitKiDl~~~~~l~~~ 159 (224)
T cd04165 80 EKSSKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGIIGMTKEHLGLALALNIPVFVVVTKIDLAPANILQET 159 (224)
T ss_pred CCCCCEEEEEECCCHHHHHHHHHHHHHCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHH
T ss_conf 36786799997887399999999876355689899993178897799999999999839998999989776898999999
Q ss_pred HHHHHHHHH-----------------------HHHHH---HHHHHHHCCCCCCHHHHHHHHHHHCC
Q ss_conf 888775553-----------------------22321---00011100223200678776321000
Q gi|254780321|r 151 KKQIEETIG-----------------------ISTED---ALLVSAKTGEGIPLLLERIVQQLPSP 190 (606)
Q Consensus 151 ~~ei~~~~g-----------------------~~~~~---ii~vSAktG~GV~~LLd~Iv~~iP~P 190 (606)
..+|..++. ++... ++.+|+.+|.|++.|... ...+|++
T Consensus 160 ~~~i~~~lk~p~~~k~p~~v~~~~d~~~~a~~~~~~~ivPIf~vS~VtG~Gi~~L~~f-L~~LP~r 224 (224)
T cd04165 160 LKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAF-LNLLPLR 224 (224)
T ss_pred HHHHHHHHCCCCCCCCCEECCCHHHHHHHHHCCCCCCCCCEEEEECCCCCCHHHHHHH-HHHCCCC
T ss_conf 9999999704475568702168588999986488677746799765898799999999-9876999
No 74
>COG5258 GTPBP1 GTPase [General function prediction only]
Probab=99.95 E-value=3.3e-27 Score=202.12 Aligned_cols=277 Identities=23% Similarity=0.334 Sum_probs=208.3
Q ss_pred CCCCCHHHCEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCC-EEECCCHHHHHHCCEEEEEEEEEEEECCC-------
Q ss_conf 8899852531799980138987788999999829805444431-13058677987195052327999974378-------
Q gi|254780321|r 3 KKPTPLSRIRNFSIVAHIDHGKSTLADRFIQHCRGLTEREMSS-QVLDNMDIERERGITIKAQTVRLNYTSTD------- 74 (606)
Q Consensus 3 ~~~~p~~~IRN~~IiaHvDhGKTTL~d~lL~~tg~i~~~~~~~-~vlD~~~~EreRGITIka~~~~~~~~~~~------- 74 (606)
++.+++++| |++..||||||||||+..|. ||..++.+... .++|-..-|-|||-|- .+++...+++
T Consensus 110 ~~~~~~~hv-~Vg~aGhVdhGKSTlvG~Lv--tG~~DDG~G~tR~~ldv~kHEverGlsa---~iS~~v~Gf~dgk~~rl 183 (527)
T COG5258 110 KTEEAPEHV-LVGVAGHVDHGKSTLVGVLV--TGRLDDGDGATRSYLDVQKHEVERGLSA---DISLRVYGFDDGKVVRL 183 (527)
T ss_pred CCCCCCCEE-EEEEECCCCCCCCEEEEEEE--ECCCCCCCCCHHHHHHHHHHHHHHCCCC---CEEEEEEEECCCCEEEE
T ss_conf 125799638-99974244578635987898--4577788840211345416777616532---22699997249926760
Q ss_pred --------------CCEEEEEEEECCCCCHHHHHHHHHHH--HCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEC
Q ss_conf --------------84389999617873002799999997--30268999986878865589999999970996799832
Q gi|254780321|r 75 --------------AKDYQLNLIDTPGHVDFTYEVSRSLS--ACEGSLLVVDATQGVEAQTLANVYQAIDNNHEIITVLN 138 (606)
Q Consensus 75 --------------~~~y~iNlIDTPGH~DF~~EV~r~l~--a~dgaiLvVdA~~Gvq~QT~~~~~~A~~~~l~~I~viN 138 (606)
.-|-.+.|+||-||.-+---..|.|- -.|=.+|+|.|.+|++--|++|+-.|+..++|+|++++
T Consensus 184 knPld~aE~~~vv~~aDklVsfVDtvGHEpwLrTtirGL~gqk~dYglLvVaAddG~~~~tkEHLgi~~a~~lPviVvvT 263 (527)
T COG5258 184 KNPLDEAEKAAVVKRADKLVSFVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDGVTKMTKEHLGIALAMELPVIVVVT 263 (527)
T ss_pred CCCCCHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHCCCEEEEEE
T ss_conf 58520777767665203089998537862789988888732666627999981677303306765656461697799999
Q ss_pred CCCC-CCCCCCCHHHHHHHHHHH---------------------HHH----HHHHHHHHCCCCCCHHHHHHHHHHHCCCC
Q ss_conf 6788-753211338887755532---------------------232----10001110022320067877632100011
Q gi|254780321|r 139 KADL-PSADPDRVKKQIEETIGI---------------------STE----DALLVSAKTGEGIPLLLERIVQQLPSPTS 192 (606)
Q Consensus 139 KiD~-~~A~~e~v~~ei~~~~g~---------------------~~~----~ii~vSAktG~GV~~LLd~Iv~~iP~P~~ 192 (606)
|+|+ |+.++..+.++|..++-. ... .++++|+-||.|.+ ||+.+..++|.-.
T Consensus 264 K~D~~~ddr~~~v~~ei~~~Lk~v~Rip~~vk~~~d~v~aa~a~k~~~~vvPi~~tSsVTg~Gld-lL~e~f~~Lp~rr- 341 (527)
T COG5258 264 KIDMVPDDRFQGVVEEISALLKRVGRIPLIVKDTDDVVLAAKAMKAGRGVVPIFYTSSVTGEGLD-LLDEFFLLLPKRR- 341 (527)
T ss_pred ECCCCCHHHHHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHCCCCEEEEEEEECCCCCCHH-HHHHHHHHCCCCC-
T ss_conf 52568278899999999999997434653550553267765433237825779998224575389-9999997498500-
Q ss_pred HHHHHCCCCCCCCCEEECCCCCEEEEEEECCCCCCCCCEEEEEC-CCCCCCCCCCCCCCCCEEEEHHCCCCCHHHHHHCC
Q ss_conf 11220123310121011475725999981698735584588733-55642101222335541240101247123322011
Q gi|254780321|r 193 PEGANAPLKALLIDSWYNSYLGVMVLVRIINGQLTKGQSIRLMG-TNAKYQVERIGILTPKMIDIEALYPGEIGVMIASI 271 (606)
Q Consensus 193 ~~~~~~Pl~alVfds~~D~~~G~I~~~RV~sG~lk~Gd~I~~~~-~g~~~~v~~ig~~~~~~~~v~~l~aGdVG~ii~gi 271 (606)
.-+..+||.|+|-+.+.-..+|.++.+.|.+|.+..||++++-+ ...+++-..+....++...++++.||+| +-..+
T Consensus 342 ~~~d~g~flmYId~iYsVtGVGtVvsGsV~~G~l~~gd~vllGP~~~G~fr~v~vkSIemh~~rvdsa~aG~i--ig~Al 419 (527)
T COG5258 342 RWDDEGPFLMYIDKIYSVTGVGTVVSGSVKSGILHVGDTVLLGPFKDGKFREVVVKSIEMHHYRVDSAKAGSI--IGIAL 419 (527)
T ss_pred CCCCCCCEEEEEEEEEEEEEEEEEEEEEEEEEEECCCCEEEECCCCCCCEEEEEEEEEEEEEEEECCCCCCCE--EEEEE
T ss_conf 2477897289987567774257898613776166059879974578995799999999976677032357758--99996
Q ss_pred CCCCC--CCCCCEECCCCCC
Q ss_conf 00244--4454200046678
Q gi|254780321|r 272 KEVSH--TRVGDTITDDSSP 289 (606)
Q Consensus 272 k~l~~--~~vGDTl~~~~~p 289 (606)
++... ++-|-.|.....|
T Consensus 420 ~gv~~e~lerGMVl~~~~~p 439 (527)
T COG5258 420 KGVEKEELERGMVLSAGADP 439 (527)
T ss_pred CCCCHHHHHCCEEECCCCCC
T ss_conf 26687787345175279996
No 75
>cd03709 lepA_C lepA_C: This family represents the C-terminal region of LepA, a GTP-binding protein localized in the cytoplasmic membrane. LepA is ubiquitous in Bacteria and Eukaryota (e.g. Saccharomyces cerevisiae GUF1p), but is missing from Archaea. LepA exhibits significant homology to elongation factors (EFs) Tu and G. The function(s) of the proteins in this family are unknown. The N-terminal domain of LepA is homologous to a domain of similar size found in initiation factor 2 (IF2), and in EF-Tu and EF-G (factors required for translation in Escherichia coli). Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including S. cerevisiae GUF1) originated within the bacterial LepA family. LepA has never been observed in archaea, and eukaryl LepA is organellar. LepA is therefore a true bacterial GTPase, found only in the bacterial lineage.
Probab=99.94 E-value=3.6e-27 Score=201.91 Aligned_cols=79 Identities=66% Similarity=1.227 Sum_probs=77.2
Q ss_pred CCEEEEEEEECCCCCHHHHHHHHHHHHEEECCCCCC-CEEEEEEEECHHHHHHHHHHHHHHHCCCEEEEEEEECCCEECC
Q ss_conf 326999998083100038999886300142443368-3699999960433322046876763574188898543546436
Q gi|254780321|r 410 EPWIQVTIITPNEYLGSILKLCQERRGIQIDMSHLD-NRAMIVYELPLNEVIFDFYDRLKSVSKGYASFDYNVIDYRDSD 488 (606)
Q Consensus 410 EPi~~~~I~~P~ey~G~Vm~~l~~RRG~~~~m~~~~-~~~~i~~~vPl~Eli~~f~~~LkS~T~G~as~~ye~~~Y~~~d 488 (606)
|||++++|++|+||+|+||++|++|||++.+|++.+ +++++.|++||+||++||+|+|||+|+|||||+|||++|+|||
T Consensus 1 EPi~~~~I~~P~ey~G~V~~ll~~rRG~~~~~~~~~~~~~~i~~~vPlaE~~~~f~~~LkS~T~G~as~~~e~~~y~~ad 80 (80)
T cd03709 1 EPFVKATIITPSEYLGAIMELCQERRGVQKDMEYLDANRVMLTYELPLAEIVYDFFDKLKSISKGYASLDYELIGYRESD 80 (80)
T ss_pred CCEEEEEEECCHHHHHHHHHHHHHHHCEEECCEECCCCEEEEEEECCHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCC
T ss_conf 98699999685898999999999842577254654898799999944799765477876643566299998744623588
No 76
>TIGR00487 IF-2 translation initiation factor IF-2; InterPro: IPR000178 Initiation factor 2 (IF-2) (gene infB) is one of the three factors required for the initiation of protein biosynthesis in bacteria. IF-2 promotes the GTP-dependent binding of the initiator tRNA to the small subunit of the ribosome. IF-2 is a protein of about 70 to 95 Kd which contains a central GTP-binding domain flanked by a highly variable N-terminal domain and a more conserved C-terminal domain. Bacterial IF-2 is structurally and functionally related to eukaryotic mitochondrial IF-2 (IF-2(mt)) as well as to algal and plants chloroplast IF-2 (IF-2(chl)). Both IF-2(mt) and IF-2(chl) are encoded by nuclear genes and are produced as precursor proteins with a transit peptide. An exception are red algae where IF-2(chl) is encoded by the plastid genome .; GO: 0003743 translation initiation factor activity, 0005525 GTP binding, 0006413 translational initiation, 0005622 intracellular.
Probab=99.93 E-value=3.3e-25 Score=188.70 Aligned_cols=207 Identities=32% Similarity=0.468 Sum_probs=166.5
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHCCEEEEEEEEEEEECCCCCEEEEEEEECCCCCHH
Q ss_conf 17999801389877889999998298054444311305867798719505232799997437884389999617873002
Q gi|254780321|r 12 RNFSIVAHIDHGKSTLADRFIQHCRGLTEREMSSQVLDNMDIERERGITIKAQTVRLNYTSTDAKDYQLNLIDTPGHVDF 91 (606)
Q Consensus 12 RN~~IiaHvDhGKTTL~d~lL~~tg~i~~~~~~~~vlD~~~~EreRGITIka~~~~~~~~~~~~~~y~iNlIDTPGH~DF 91 (606)
--+.|.||+|||||+|.|.+-. +. +...+.+ |||-....-.+.+. +++. .+.++|||||.-|
T Consensus 91 p~~~~~gh~dhg~~~ll~~~~~-~~-~~~~~~g-------------g~~~~~g~y~~~~~--~~~~-~~~f~d~pgh~~f 152 (594)
T TIGR00487 91 PVVTIMGHVDHGKTSLLDSIRK-TK-VAAGEAG-------------GITQHIGAYHVEKE--DGKK-WITFLDTPGHEAF 152 (594)
T ss_pred CEEEEEECCCCCCHHHHHHHHH-CC-CCCCCCC-------------CCHHHCCEEEEEEC--CCCE-EEEEECCCCHHHH
T ss_conf 6368851235540345655541-00-0011136-------------52010130456642--8843-7998407753677
Q ss_pred HHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHH------H
Q ss_conf 7999999973026899998687886558999999997099679983267887532113388877555322321------0
Q gi|254780321|r 92 TYEVSRSLSACEGSLLVVDATQGVEAQTLANVYQAIDNNHEIITVLNKADLPSADPDRVKKQIEETIGISTED------A 165 (606)
Q Consensus 92 ~~EV~r~l~a~dgaiLvVdA~~Gvq~QT~~~~~~A~~~~l~~I~viNKiD~~~A~~e~v~~ei~~~~g~~~~~------i 165 (606)
..-..|...+.|-++|++.|.+|+++||...+..|...+.|+++++||+|+|.++|+++..++.+. |+.+++ .
T Consensus 153 ~~~~~~g~~~~d~~~~~~~~~dg~~~~~~~~~~h~~~~~~p~~~~~n~~d~p~~~pd~~~~~~~~~-g~~~~~wgg~~~~ 231 (594)
T TIGR00487 153 TLMRARGAKVTDIVVLVVAADDGVKPQTIEAISHAKAANVPLIVAVNKIDKPEANPDRVKQELSEY-GLVPEDWGGDTIF 231 (594)
T ss_pred HHHHHCCCCEEEEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHC-CCCCHHCCCCEEE
T ss_conf 877633761001579998415564235688765333307736998612467667877899998751-7750112783468
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHCCCCHHHHHCCCCCCCCCEEECCCCCEEEEEEECCCCCCCCCEEEEECC
Q ss_conf 001110022320067877632100011112201233101210114757259999816987355845887335
Q gi|254780321|r 166 LLVSAKTGEGIPLLLERIVQQLPSPTSPEGANAPLKALLIDSWYNSYLGVMVLVRIINGQLTKGQSIRLMGT 237 (606)
Q Consensus 166 i~vSAktG~GV~~LLd~Iv~~iP~P~~~~~~~~Pl~alVfds~~D~~~G~I~~~RV~sG~lk~Gd~I~~~~~ 237 (606)
+++||++|.|+++|+|.|.-.-.......+++...++.+.+...|..+|.++.+-+.+|+++.||.+..-..
T Consensus 232 ~~~~~~~g~g~~~l~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~g~g~~~~~~~~~g~l~~gd~~~~g~~ 303 (594)
T TIGR00487 232 VPVSALTGDGIDELLDAILLQSEVEELKANPNGQASGTVLEAELDKGRGPVATVLVQSGTLRVGDSVVLGAA 303 (594)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCEEEEEEECCCEECCCEEEEECC
T ss_conf 862001367657888888876434443203232222025641001365632456661472011641352032
No 77
>TIGR00491 aIF-2 translation initiation factor aIF-2; InterPro: IPR004544 Initiation factor 2 (IF-2) is one of the three factors required for the initiation of protein biosynthesis in bacteria. IF-2 promotes the GTP-dependent binding of the initiator tRNA to the small subunit of the ribosome. IF-2 is a protein of about 70 to 95 Kd which contains a central GTP-binding domain flanked by a highly variable N-terminal domain and a more conserved C-terminal domain. Some members of this family undergo protein self splicing that involves a post-translational excision of the intein followed by peptide ligation.; GO: 0003743 translation initiation factor activity, 0005525 GTP binding, 0006413 translational initiation, 0005622 intracellular.
Probab=99.92 E-value=1.1e-24 Score=185.26 Aligned_cols=310 Identities=28% Similarity=0.381 Sum_probs=188.2
Q ss_pred EEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHCCEE--EEEEEEEEE----ECCCCCEEE-------EE
Q ss_conf 99801389877889999998298054444311305867798719505--232799997----437884389-------99
Q gi|254780321|r 15 SIVAHIDHGKSTLADRFIQHCRGLTEREMSSQVLDNMDIERERGITI--KAQTVRLNY----TSTDAKDYQ-------LN 81 (606)
Q Consensus 15 ~IiaHvDhGKTTL~d~lL~~tg~i~~~~~~~~vlD~~~~EreRGITI--ka~~~~~~~----~~~~~~~y~-------iN 81 (606)
+|+-| .|||.|++= .| .+..||++ |||- -|+-+.+.. ...=||.+. +=
T Consensus 558 Givvh----nTTLLDkIR-ks-~Vv~kEAG-------------giTQhiGAsevP~dVI~~ic~Dl~K~f~i~~~iPGLL 618 (1145)
T TIGR00491 558 GIVVH----NTTLLDKIR-KS-AVVKKEAG-------------GITQHIGASEVPLDVIKKICGDLLKKFKIKLKIPGLL 618 (1145)
T ss_pred CEEEE----CCCCCCCCC-CC-CEEEECCC-------------CCCEECCCEECCHHHHHHHCHHHHHCEEEEEECCEEE
T ss_conf 64785----143310003-34-01324778-------------8401006665466898651321211402578658015
Q ss_pred EEECCCCCHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCC-CCCCC------------
Q ss_conf 96178730027999999973026899998687886558999999997099679983267887-53211------------
Q gi|254780321|r 82 LIDTPGHVDFTYEVSRSLSACEGSLLVVDATQGVEAQTLANVYQAIDNNHEIITVLNKADLP-SADPD------------ 148 (606)
Q Consensus 82 lIDTPGH~DF~~EV~r~l~a~dgaiLvVdA~~Gvq~QT~~~~~~A~~~~l~~I~viNKiD~~-~A~~e------------ 148 (606)
+||||||.-|+.=..|.-+.+|-||||||-.+|.+|||.+.+..-.....|.|++-|||||- +++..
T Consensus 619 fIDTPGHeaFt~LRkRGGAlADlAILvVDInEGfkpQT~EA~~ILr~~ktPFvVAANKIDrI~GW~~~e~~~fl~~~~kq 698 (1145)
T TIGR00491 619 FIDTPGHEAFTNLRKRGGALADLAILVVDINEGFKPQTEEALNILRSFKTPFVVAANKIDRIPGWKSHEGRPFLESYEKQ 698 (1145)
T ss_pred EEECCCCHHHHCCCCCCCHHHHHHEEEEEECCCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHC
T ss_conf 86078623442201001036301101341026984034899999612898728950330558896454885166665411
Q ss_pred --CHHHH----HHHH--------HHHHHHH------------HHHHHHHCCCCCCHHHHHHHHH----HHCCCCHHHHHC
Q ss_conf --33888----7755--------5322321------------0001110022320067877632----100011112201
Q gi|254780321|r 149 --RVKKQ----IEET--------IGISTED------------ALLVSAKTGEGIPLLLERIVQQ----LPSPTSPEGANA 198 (606)
Q Consensus 149 --~v~~e----i~~~--------~g~~~~~------------ii~vSAktG~GV~~LLd~Iv~~----iP~P~~~~~~~~ 198 (606)
.+.+. +.++ -||+++- ++|+||.||+||.+||-.++-. +-. +-.-..++
T Consensus 699 ~~~~~~~l~~~~y~lv~~kPL~e~GF~AerFdRv~Dft~tVaviPvSA~tGEGIpelL~~l~GLAQ~YL~~-~Lkl~~eG 777 (1145)
T TIGR00491 699 EQRVKQNLDKKVYNLVIKKPLAEEGFEAERFDRVRDFTRTVAVIPVSAVTGEGIPELLLILAGLAQKYLEE-KLKLEVEG 777 (1145)
T ss_pred CHHHHHHHHHHHHHHHHCCCHHHCCCCCCCCCCEECEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHH-HCCEEECC
T ss_conf 16788668877898873022112588712255200001136898866567897489999998888899885-26742227
Q ss_pred CCCCCCCCEEECCCCCEEEEEEECCCCCCCCCEEEEECCCCCCCCCCCC-CCCCC-----EEEEHHCCCCCHHHHHHCCC
Q ss_conf 2331012101147572599998169873558458873355642101222-33554-----12401012471233220110
Q gi|254780321|r 199 PLKALLIDSWYNSYLGVMVLVRIINGQLTKGQSIRLMGTNAKYQVERIG-ILTPK-----MIDIEALYPGEIGVMIASIK 272 (606)
Q Consensus 199 Pl~alVfds~~D~~~G~I~~~RV~sG~lk~Gd~I~~~~~g~~~~v~~ig-~~~~~-----~~~v~~l~aGdVG~ii~gik 272 (606)
|-++-|.-.==...+|.-+=.=+|+|.||+||.|.++..+.. -+++|- ++.|. +.+.+....=|.-+..+|++
T Consensus 778 ~AkGtiLEVKEe~GLG~T~DaviYdGilk~~D~iv~~~~d~v-ivT~vkAlLkP~Pl~emr~~~~~~~~~~ev~AAag~k 856 (1145)
T TIGR00491 778 PAKGTILEVKEEKGLGVTIDAVIYDGILKKGDIIVLAGKDDV-IVTRVKALLKPRPLEEMREERKKFKKVDEVVAAAGVK 856 (1145)
T ss_pred CCCEEEEEEEEECCCCCEEEEEEECCEECCCCEEEEECCCCC-EEEEEEEECCCCCHHHHHHHHHHCCCCCEEEECCEEE
T ss_conf 865158987850689716999995577120788998138980-5766786348888368751043047521577320358
Q ss_pred CCCCCCCCCEECCCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEEC
Q ss_conf 02444454200046678532364552222126642126770245788999988864112211125676000420289963
Q gi|254780321|r 273 EVSHTRVGDTITDDSSPTTSALPGFKPIQPVVFCGLFPVDATQFENLRTAINKLRLNDASFSFELENSTALGFGFRCGFL 352 (606)
Q Consensus 273 ~l~~~~vGDTl~~~~~p~~~~Lp~~~~~~P~v~~~i~p~~~~d~~~L~~aL~kL~~~D~sl~~e~Ets~aLg~Gfr~ggl 352 (606)
+- +.-=|++ +.| .|. |. + ++..+-++.++...+..++ ..++. +++.|.=..-=-|
T Consensus 857 -v~-A~~~~~~----------~Ag----~P~-y~-v--~~~~~iek~~e~v~~E~e~---i~i~~--d~~yGvvvKADtL 911 (1145)
T TIGR00491 857 -VA-APELDKV----------LAG----SPI-YV-V--VSEEEIEKVKEEVLKEVEE---IKIET--DEEYGVVVKADTL 911 (1145)
T ss_pred -EC-CCCHHHH----------HCC----CCE-EE-E--ECCCHHHHHHHHHHHHHHH---HHHCC--CCCCEEEEEECCC
T ss_conf -72-7761045----------457----734-89-5--1782278999999876775---54213--6511179985585
Q ss_pred CHHHHHHHHHHHHHHCCCEEE
Q ss_conf 767898889888664495069
Q gi|254780321|r 353 GLLHLEIIQERLEREFSLNLI 373 (606)
Q Consensus 353 G~LHLeVi~eRL~rEfg~ev~ 373 (606)
|- ||=+..-||++ |+.+-
T Consensus 912 GS--LEA~v~~Lr~~-~vpIk 929 (1145)
T TIGR00491 912 GS--LEALVNELRKE-GVPIK 929 (1145)
T ss_pred HH--HHHHHHHHHHC-CCCEE
T ss_conf 11--89999999857-89676
No 78
>cd03699 lepA_II lepA_II: This subfamily represents the domain II of LepA, a GTP-binding protein localized in the cytoplasmic membrane. The N-terminal domain of LepA shares regions of homology to translation factors. In terms of interaction with the ribosome, EF-G, EF-Tu and IF2 have all been demonstrated to interact at overlapping sites on the ribosome. Chemical protection studies demonstrate that they all include the universally conserved alpha-sarcin loop as part of their binding site. These data indicate that LepA may bind to this location on the ribosome as well. LepA has never been observed in archaea, and eukaryl LepA is organellar. LepA is therefore a true bacterial GTPase, found only in the bacterial lineage.
Probab=99.92 E-value=8.1e-26 Score=192.82 Aligned_cols=86 Identities=50% Similarity=0.916 Sum_probs=84.4
Q ss_pred CCCCCCCEEECCCCCEEEEEEECCCCCCCCCEEEEECCCCCCCCCCCCCCCCCEEEEHHCCCCCHHHHHHCCCCCCCCCC
Q ss_conf 33101210114757259999816987355845887335564210122233554124010124712332201100244445
Q gi|254780321|r 200 LKALLIDSWYNSYLGVMVLVRIINGQLTKGQSIRLMGTNAKYQVERIGILTPKMIDIEALYPGEIGVMIASIKEVSHTRV 279 (606)
Q Consensus 200 l~alVfds~~D~~~G~I~~~RV~sG~lk~Gd~I~~~~~g~~~~v~~ig~~~~~~~~v~~l~aGdVG~ii~gik~l~~~~v 279 (606)
|||||||||||+|+|+|+++||++|+|++||+|.++++++++++.++|+|+|++.++++|.||||||++||+|+++++++
T Consensus 1 LrALifDS~yD~y~Gvv~~vRV~~G~lk~gd~i~~~~t~~~~~v~evG~~~P~~~~~~~L~aGeVGyii~gik~~~d~~v 80 (86)
T cd03699 1 LRALIFDSWYDPYRGVIALVRVFDGTLKKGDKIRFMSTGKEYEVEEVGIFRPEMTPTDELSAGQVGYIIAGIKTVKDARV 80 (86)
T ss_pred CEEEEEEEEECCCCCEEEEEEEECCEECCCCEEEHHHCCCCCEEEEEEECCCCCCCCCEECCCCCCEEEECCCCCCCCCC
T ss_conf 90899986722788789999997999917985223348996385598871799763884947840489973420155734
Q ss_pred CCEECC
Q ss_conf 420004
Q gi|254780321|r 280 GDTITD 285 (606)
Q Consensus 280 GDTl~~ 285 (606)
|||||.
T Consensus 81 GDTitl 86 (86)
T cd03699 81 GDTITL 86 (86)
T ss_pred CCEEEC
T ss_conf 478759
No 79
>KOG1144 consensus
Probab=99.91 E-value=3.3e-23 Score=175.28 Aligned_cols=235 Identities=30% Similarity=0.420 Sum_probs=153.6
Q ss_pred HHCEE--EEEECCCCCCHHHHHHHHHHHCCCCCCCCCC---CEE-ECCCHHH--HHHCCEEEEEEEEEEEECCCCCEEEE
Q ss_conf 25317--9998013898778899999982980544443---113-0586779--87195052327999974378843899
Q gi|254780321|r 9 SRIRN--FSIVAHIDHGKSTLADRFIQHCRGLTEREMS---SQV-LDNMDIE--RERGITIKAQTVRLNYTSTDAKDYQL 80 (606)
Q Consensus 9 ~~IRN--~~IiaHvDhGKTTL~d~lL~~tg~i~~~~~~---~~v-lD~~~~E--reRGITIka~~~~~~~~~~~~~~y~i 80 (606)
++.|. .||+||||.|||-|.|.+- .|+. ...+.+ .|+ --+.+.| +||---++ +..... .+---+
T Consensus 471 ~~lRSPIcCilGHVDTGKTKlld~ir-~tNV-qegeaggitqqIgAt~fp~~ni~e~tk~~~-~~~K~~-----~kvPg~ 542 (1064)
T KOG1144 471 ENLRSPICCILGHVDTGKTKLLDKIR-GTNV-QEGEAGGITQQIGATYFPAENIREKTKELK-KDAKKR-----LKVPGL 542 (1064)
T ss_pred HHCCCCEEEEEECCCCCCHHHHHHHH-CCCC-CCCCCCCEEEECCCCCCCHHHHHHHHHHHH-HHHHHH-----CCCCEE
T ss_conf 32368637897111266057888762-0553-224456600000541152677899999987-502331-----378704
Q ss_pred EEEECCCCCHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCC-------CCCCCCCH---
Q ss_conf 99617873002799999997302689999868788655899999999709967998326788-------75321133---
Q gi|254780321|r 81 NLIDTPGHVDFTYEVSRSLSACEGSLLVVDATQGVEAQTLANVYQAIDNNHEIITVLNKADL-------PSADPDRV--- 150 (606)
Q Consensus 81 NlIDTPGH~DF~~EV~r~l~a~dgaiLvVdA~~Gvq~QT~~~~~~A~~~~l~~I~viNKiD~-------~~A~~e~v--- 150 (606)
-+||||||.-|+.=.+|..+-||-||||||-..|++|||++.+.+...++-|.|+.+||||| |++++-..
T Consensus 543 lvIdtpghEsFtnlRsrgsslC~~aIlvvdImhGlepqtiESi~lLR~rktpFivALNKiDRLYgwk~~p~~~i~~~lkk 622 (1064)
T KOG1144 543 LVIDTPGHESFTNLRSRGSSLCDLAILVVDIMHGLEPQTIESINLLRMRKTPFIVALNKIDRLYGWKSCPNAPIVEALKK 622 (1064)
T ss_pred EEECCCCCHHHHHHHHCCCCCCCEEEEEEEHHCCCCCCHHHHHHHHHHCCCCEEEEEHHHHHHCCCCCCCCCHHHHHHHH
T ss_conf 89658872555556650433455377785311167742067899887548975986101344404424898319999987
Q ss_pred -----HHHHHHHH----------HHHH---------H---HHHHHHHHCCCCCCHHHHHHHHHHHCCCCHH-HHHCCCCC
Q ss_conf -----88877555----------3223---------2---1000111002232006787763210001111-22012331
Q gi|254780321|r 151 -----KKQIEETI----------GIST---------E---DALLVSAKTGEGIPLLLERIVQQLPSPTSPE-GANAPLKA 202 (606)
Q Consensus 151 -----~~ei~~~~----------g~~~---------~---~ii~vSAktG~GV~~LLd~Iv~~iP~P~~~~-~~~~Pl~a 202 (606)
..+..+.+ |+.. . -++|+||-+|.||..||-.+++..----+.. .--..+++
T Consensus 623 Q~k~v~~EF~~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sGeGipdLl~llv~ltQk~m~~kl~y~~ev~c 702 (1064)
T KOG1144 623 QKKDVQNEFKERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISGEGIPDLLLLLVQLTQKTMVEKLAYVDEVQC 702 (1064)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCHHHEEECCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHEEE
T ss_conf 44789999999999999999971104434231467465588621221367880789999999999999987742401004
Q ss_pred CCCCEEECCCCCEEEEEEECCCCCCCCCEEEEECCCCCCCCCCC-CCCCCC
Q ss_conf 01210114757259999816987355845887335564210122-233554
Q gi|254780321|r 203 LLIDSWYNSYLGVMVLVRIINGQLTKGQSIRLMGTNAKYQVERI-GILTPK 252 (606)
Q Consensus 203 lVfds~~D~~~G~I~~~RV~sG~lk~Gd~I~~~~~g~~~~v~~i-g~~~~~ 252 (606)
-|...-.-+..|...-+-+.+|.|+.||+|.++..+.- -|+.| ..+.|+
T Consensus 703 TVlEVKvieG~GtTIDViLvNG~L~eGD~IvvcG~~Gp-IvTtIRaLLtP~ 752 (1064)
T KOG1144 703 TVLEVKVIEGHGTTIDVILVNGELHEGDQIVVCGLQGP-IVTTIRALLTPQ 752 (1064)
T ss_pred EEEEEEEECCCCCEEEEEEECCEECCCCEEEECCCCCC-HHHHHHHHCCCC
T ss_conf 78998752377716899987565526987998279986-168889763886
No 80
>KOG0466 consensus
Probab=99.89 E-value=1.5e-23 Score=177.62 Aligned_cols=253 Identities=25% Similarity=0.363 Sum_probs=170.6
Q ss_pred CEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHCCEEEEE--EEEEE------------EECCC--
Q ss_conf 317999801389877889999998298054444311305867798719505232--79999------------74378--
Q gi|254780321|r 11 IRNFSIVAHIDHGKSTLADRFIQHCRGLTEREMSSQVLDNMDIERERGITIKAQ--TVRLN------------YTSTD-- 74 (606)
Q Consensus 11 IRN~~IiaHvDhGKTTL~d~lL~~tg~i~~~~~~~~vlD~~~~EreRGITIka~--~~~~~------------~~~~~-- 74 (606)
--||+-||||.|||||++-++ +|.-+-| ..-|-||.||||.. ++.+. |.++.
T Consensus 38 TiNIGTIGHVAHGKSTvVkAi---SGv~Tvr---------FK~ELERNITIKLGYANAKIYkc~~~kCprP~cy~s~gS~ 105 (466)
T KOG0466 38 TINIGTIGHVAHGKSTVVKAI---SGVHTVR---------FKNELERNITIKLGYANAKIYKCDDPKCPRPGCYRSFGSS 105 (466)
T ss_pred EEEECCEECCCCCCCEEEEEE---CCCEEEE---------EHHHHHCCEEEEECCCCCEEEECCCCCCCCCCHHHCCCCC
T ss_conf 443021110025740244540---4614887---------1334421526885135445785589889996630204789
Q ss_pred ------------CCEE----EEEEEECCCCCHHHHHHHHHHHHCCEEEEEEECCCC-CCHHHHHHHHHHHHCCCC-EEEE
Q ss_conf ------------8438----999961787300279999999730268999986878-865589999999970996-7998
Q gi|254780321|r 75 ------------AKDY----QLNLIDTPGHVDFTYEVSRSLSACEGSLLVVDATQG-VEAQTLANVYQAIDNNHE-IITV 136 (606)
Q Consensus 75 ------------~~~y----~iNlIDTPGH~DF~~EV~r~l~a~dgaiLvVdA~~G-vq~QT~~~~~~A~~~~l~-~I~v 136 (606)
..++ ...|+|+|||-=...-.-..-++.|+|+|+|.|.+- +||||-+|+....-+.|+ +|+.
T Consensus 106 k~d~~~c~~~g~~~~~klvRHVSfVDCPGHDiLMaTMLnGaAvmDaalLlIA~NEsCPQPQTsEHLaaveiM~Lkhiiil 185 (466)
T KOG0466 106 KEDRPPCDRPGCEGKMKLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAAVEIMKLKHIIIL 185 (466)
T ss_pred CCCCCCCCCCCCCCCEEEEEEEEECCCCCHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCEEEEE
T ss_conf 99999865689987458999877514796188998874326775433410104888989850667888778631418998
Q ss_pred ECCCCCCCCCCCCHHHH---HHHHH-H--HHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCHHHHHCCCCCCCCCEE--
Q ss_conf 32678875321133888---77555-3--2232100011100223200678776321000111122012331012101--
Q gi|254780321|r 137 LNKADLPSADPDRVKKQ---IEETI-G--ISTEDALLVSAKTGEGIPLLLERIVQQLPSPTSPEGANAPLKALLIDSW-- 208 (606)
Q Consensus 137 iNKiD~~~A~~e~v~~e---i~~~~-g--~~~~~ii~vSAktG~GV~~LLd~Iv~~iP~P~~~~~~~~Pl~alVfds~-- 208 (606)
-||+|+... ++..+| |..++ + .+...++|+||.-..||+.++|.|++++|-|. +|-..|-++.|+.|+
T Consensus 186 QNKiDli~e--~~A~eq~e~I~kFi~~t~ae~aPiiPisAQlkyNId~v~eyivkkIPvPv--Rdf~s~prlIVIRSFDV 261 (466)
T KOG0466 186 QNKIDLIKE--SQALEQHEQIQKFIQGTVAEGAPIIPISAQLKYNIDVVCEYIVKKIPVPV--RDFTSPPRLIVIRSFDV 261 (466)
T ss_pred ECHHHHHHH--HHHHHHHHHHHHHHHCCCCCCCCEEEEHHHHCCCHHHHHHHHHHCCCCCC--CCCCCCCCEEEEEEECC
T ss_conf 212335437--78898899999997456557995210136433676799999986189882--01478972899986236
Q ss_pred ------ECCCCCEEEEEEECCCCCCCCCEEEEECCCC-------CCCCC----CCCCCCCCEEEEHHCCCCC-HHHHHHC
Q ss_conf ------1475725999981698735584588733556-------42101----2223355412401012471-2332201
Q gi|254780321|r 209 ------YNSYLGVMVLVRIINGQLTKGQSIRLMGTNA-------KYQVE----RIGILTPKMIDIEALYPGE-IGVMIAS 270 (606)
Q Consensus 209 ------~D~~~G~I~~~RV~sG~lk~Gd~I~~~~~g~-------~~~v~----~ig~~~~~~~~v~~l~aGd-VG~ii~g 270 (606)
+|.-.|-++-+.+..|.|+.||.|.+-+ |- ..+.. ++-.+..++.+...+.+|- ||
T Consensus 262 NkPG~ev~~lkGgvaggsil~Gvlkvg~~IEiRP-Giv~kd~~g~~~C~Pi~SrI~sL~AE~n~L~~AvPGGLIG----- 335 (466)
T KOG0466 262 NKPGSEVDDLKGGVAGGSILKGVLKVGQEIEIRP-GIVTKDENGNIKCRPIFSRIVSLFAEQNDLQFAVPGGLIG----- 335 (466)
T ss_pred CCCCCHHHCCCCCCCCCHHHHHHHHCCCEEEECC-CEEEECCCCCEEEEEHHHHHHHHHHHHCCCEEECCCCEEE-----
T ss_conf 8998412214574203055432420485888627-6155558996787567887788875323502425885564-----
Q ss_pred CCCCCCCCCCCEECCCCCC
Q ss_conf 1002444454200046678
Q gi|254780321|r 271 IKEVSHTRVGDTITDDSSP 289 (606)
Q Consensus 271 ik~l~~~~vGDTl~~~~~p 289 (606)
+ .+.+--|||.++.-
T Consensus 336 V----GT~~DPtlcraDrl 350 (466)
T KOG0466 336 V----GTKMDPTLCRADRL 350 (466)
T ss_pred E----CCCCCCCHHHHHHH
T ss_conf 1----25328540026678
No 81
>cd03710 BipA_TypA_C BipA_TypA_C: a C-terminal portion of BipA or TypA having homology to the C terminal domains of the elongation factors EF-G and EF-2. A member of the ribosome binding GTPase superfamily, BipA is widely distributed in bacteria and plants. BipA is a highly conserved protein with global regulatory properties in Escherichia coli. BipA is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways. BipA functions as a translation factor that is required specifically for the expression of the transcriptional modulator Fis. BipA binds to ribosomes at a site that coincides with that of EF-G and has a GTPase activity that is sensitive to high GDP:GTP ratios and, is stimulated by 70S ribosomes programmed with mRNA and aminoacylated tRNAs. The growth rate-dependent induction of BipA allows the efficient expression of Fis, thereby modulating a range of downstream processes, including DNA metabolism and type III secreti
Probab=99.86 E-value=8e-22 Score=165.97 Aligned_cols=77 Identities=22% Similarity=0.413 Sum_probs=74.5
Q ss_pred CCEEEEEEEECCCCCHHHHHHHHHHHHEEECCCCCC-CEEEEEEEECHHHHHHHHHHHHHHHCCCEEEEEEEECCCEEC
Q ss_conf 326999998083100038999886300142443368-369999996043332204687676357418889854354643
Q gi|254780321|r 410 EPWIQVTIITPNEYLGSILKLCQERRGIQIDMSHLD-NRAMIVYELPLNEVIFDFYDRLKSVSKGYASFDYNVIDYRDS 487 (606)
Q Consensus 410 EPi~~~~I~~P~ey~G~Vm~~l~~RRG~~~~m~~~~-~~~~i~~~vPl~Eli~~f~~~LkS~T~G~as~~ye~~~Y~~~ 487 (606)
|||++++|.+|+||+|+||++|++|||++.+|++.+ +++.++|++|++|| +||+++|+|+|+|+|+|+|+|++|+|-
T Consensus 1 EP~~~~~I~~P~e~~G~V~~~l~~Rrg~i~~~~~~~~~~~~l~~~iP~r~l-~Gf~~~Lrs~T~G~a~~~~~f~~Y~P~ 78 (79)
T cd03710 1 EPIEELTIDVPEEYSGAVIEKLGKRKGEMVDMEPDGNGRTRLEFKIPSRGL-IGFRSEFLTDTRGTGIMNHVFDGYEPY 78 (79)
T ss_pred CCEEEEEEEECHHHHHHHHHHHHHCCEEEECCEECCCCEEEEEEECCHHHH-HCCHHHHHHHCCCEEEEEEEECCEECC
T ss_conf 985999999467886899987873880997348469963999998897887-251787564367759999995562338
No 82
>cd04097 mtEFG1_C mtEFG1_C: C-terminus of mitochondrial Elongation factor G1 (mtEFG1)-like proteins found in eukaryotes. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more complex than that in prokaryotes, with both cytoplasmic and mitochondrial elongation factors and multiple isoforms being expressed in certain species. Eukaryotic EF-2 operates in the cytosolic protein synthesis machinery of eukaryotes, EF-Gs in protein synthesis in bacteria. Eukaryotic mtEFG1 proteins show significant homology to bacterial EF-Gs. Mutants in yeast mtEFG1 have impaired mitochondrial protein synthesis, respiratory defects and a tendency to lose mitochondrial DNA. There are two forms of mtEFG present in mammals (desig
Probab=99.83 E-value=9.8e-21 Score=158.67 Aligned_cols=77 Identities=26% Similarity=0.578 Sum_probs=75.0
Q ss_pred CCEEEEEEEECCCCCHHHHHHHHHHHHEEECCCCCCCEEEEEEEECHHHHHHHHHHHHHHHCCCEEEEEEEECCCEEC
Q ss_conf 326999998083100038999886300142443368369999996043332204687676357418889854354643
Q gi|254780321|r 410 EPWIQVTIITPNEYLGSILKLCQERRGIQIDMSHLDNRAMIVYELPLNEVIFDFYDRLKSVSKGYASFDYNVIDYRDS 487 (606)
Q Consensus 410 EPi~~~~I~~P~ey~G~Vm~~l~~RRG~~~~m~~~~~~~~i~~~vPl~Eli~~f~~~LkS~T~G~as~~ye~~~Y~~~ 487 (606)
|||++++|.+|+||+|+||++|++|||++.+|+..++++.|++++|++|| +||.++|+|+|+|+|+|+++|+||+|.
T Consensus 1 EPi~~v~I~vP~e~~G~V~~~l~~RRG~i~~~~~~~~~~~i~a~vP~~el-~gy~~~Lrs~T~G~g~~s~~f~~y~~v 77 (78)
T cd04097 1 EPIMKVEVTAPTEFQGNVIGLLNKRKGTIVDTDTGEDEFTLEAEVPLNDM-FGYSTELRSMTQGKGEFSMEFSRYAPV 77 (78)
T ss_pred CCEEEEEEECCHHHHHHHHHHHHHCCCEEECCCCCCCEEEEEEEECHHHH-HCCHHHHHHHCCCEEEEEEEECCCCCC
T ss_conf 98699999762798789999987768787772035995999999487886-142898786657818999982454449
No 83
>smart00838 EFG_C Elongation factor G C-terminus. This domain includes the carboxyl terminal regions of Elongation factor G, elongation factor 2 and some tetracycline resistance proteins and adopt a ferredoxin-like fold.
Probab=99.83 E-value=1.2e-20 Score=158.15 Aligned_cols=79 Identities=28% Similarity=0.548 Sum_probs=76.3
Q ss_pred HHCCEEEEEEEECCCCCHHHHHHHHHHHHEEECCCCCCCEEEEEEEECHHHHHHHHHHHHHHHCCCEEEEEEEECCCEEC
Q ss_conf 62326999998083100038999886300142443368369999996043332204687676357418889854354643
Q gi|254780321|r 408 LREPWIQVTIITPNEYLGSILKLCQERRGIQIDMSHLDNRAMIVYELPLNEVIFDFYDRLKSVSKGYASFDYNVIDYRDS 487 (606)
Q Consensus 408 i~EPi~~~~I~~P~ey~G~Vm~~l~~RRG~~~~m~~~~~~~~i~~~vPl~Eli~~f~~~LkS~T~G~as~~ye~~~Y~~~ 487 (606)
++|||++++|.+|++|+|+||++|++|||++.+|++.++..+|.|.+|++|+ +||+++|||+|+|+|+|+++|+||++.
T Consensus 1 LLEPi~~~~I~~P~~~~G~V~~~l~~RRG~i~~~~~~~~~~~i~a~vP~~e~-~gf~~~Lrs~T~G~g~~~~~f~~ye~v 79 (85)
T smart00838 1 LLEPIMKVEVTVPEEYMGDVIGDLNSRRGKIEGMEQRGGAQVIKAKVPLSEM-FGYATDLRSATQGRATWSMEFSHYEEV 79 (85)
T ss_pred CCCCEEEEEEEECHHHHHHHHHHHHHCCCEEEEEEECCCEEEEEEEEEHHHH-HHHHHHHHHHCCCCEEEEEEECCCCCC
T ss_conf 9787699999978899999999988658289705745990999999877887-549999996488938999997568409
No 84
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.83 E-value=2.3e-19 Score=149.46 Aligned_cols=154 Identities=29% Similarity=0.439 Sum_probs=110.1
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHCCEEEEEEEEEEEECCCCCEEEEEEEECCCC----
Q ss_conf 7999801389877889999998298054444311305867798719505232799997437884389999617873----
Q gi|254780321|r 13 NFSIVAHIDHGKSTLADRFIQHCRGLTEREMSSQVLDNMDIERERGITIKAQTVRLNYTSTDAKDYQLNLIDTPGH---- 88 (606)
Q Consensus 13 N~~IiaHvDhGKTTL~d~lL~~tg~i~~~~~~~~vlD~~~~EreRGITIka~~~~~~~~~~~~~~y~iNlIDTPGH---- 88 (606)
++||+|+..+|||||..+|+ |. ++.. + ....|.|.......+. +++..+.|+||||-
T Consensus 4 ~V~ivG~pN~GKSTL~N~l~---g~--~~~~---v------s~~pgtTr~~~~~~~~-----~~~~~~~~vDtpGi~~~~ 64 (174)
T cd01895 4 RIAIIGRPNVGKSSLVNALL---GE--ERVI---V------SDIAGTTRDSIDVPFE-----YDGKKYTLIDTAGIRRKG 64 (174)
T ss_pred EEEEECCCCCCHHHHHHHHH---CC--CCEE---E------CCCCCCEEECCEEEEE-----ECCEEEEEEECCCCCCCC
T ss_conf 99999899998999999983---89--8444---3------4999915733289999-----999889998578842134
Q ss_pred -----CHHHHHHHHH---HHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCC---CCCHHHHHHHH
Q ss_conf -----0027999999---973026899998687886558999999997099679983267887532---11338887755
Q gi|254780321|r 89 -----VDFTYEVSRS---LSACEGSLLVVDATQGVEAQTLANVYQAIDNNHEIITVLNKADLPSAD---PDRVKKQIEET 157 (606)
Q Consensus 89 -----~DF~~EV~r~---l~a~dgaiLvVdA~~Gvq~QT~~~~~~A~~~~l~~I~viNKiD~~~A~---~e~v~~ei~~~ 157 (606)
.++ ..+.++ +.-||-+++|+||.+|++.|....+....+.+.|+++|+||+|+...+ .++..+++++.
T Consensus 65 ~~~~~~e~-~~~~~~~~~i~~~dvil~viDa~~~~~~~d~~i~~~l~~~~~p~iiv~NK~Dli~~~~~~~~~~~~~~~~~ 143 (174)
T cd01895 65 KVEEGIEK-YSVLRTLKAIERADVVLLVIDATEGITEQDLRIAGLILEEGKALVIVVNKWDLVEKDSKTMKEFKKEIRRK 143 (174)
T ss_pred CCCCHHHH-HHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECEECCCCCHHHHHHHHHHHHHH
T ss_conf 42106889-99999999998428658997589899889999999999859986999856752676477899999999987
Q ss_pred HH-HHHHHHHHHHHHCCCCCCHHHHHHHHH
Q ss_conf 53-223210001110022320067877632
Q gi|254780321|r 158 IG-ISTEDALLVSAKTGEGIPLLLERIVQQ 186 (606)
Q Consensus 158 ~g-~~~~~ii~vSAktG~GV~~LLd~Iv~~ 186 (606)
+. +...+++++||++|.|+++|+++|.+.
T Consensus 144 ~~~~~~~~ii~iSA~~g~Gi~~L~~~I~ei 173 (174)
T cd01895 144 LPFLDYAPIVFISALTGQGVDKLFDAIDEV 173 (174)
T ss_pred HCCCCCCCEEEEECCCCCCHHHHHHHHHHH
T ss_conf 341689928999744798999999999986
No 85
>cd03713 EFG_mtEFG_C EFG_mtEFG_C: domains similar to the C-terminal domain of the bacterial translational elongation factor (EF) EF-G. Included in this group is the C-terminus of mitochondrial Elongation factor G1 (mtEFG1) and G2 (mtEFG2) proteins. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more complex than that in prokaryotes, with both cytoplasmic and mitochondrial elongation factors and multiple isoforms being expressed in certain species. During the process of peptide synthesis and tRNA site changes, the ribosome is moved along the mRNA a distance equal to one codon with the addition of each amino acid. In bacteria this translocation step is catalyzed by EF-G_GTP, which is hydrolyzed to provide
Probab=99.81 E-value=7.3e-20 Score=152.83 Aligned_cols=77 Identities=29% Similarity=0.566 Sum_probs=75.0
Q ss_pred CCEEEEEEEECCCCCHHHHHHHHHHHHEEECCCCCCCEEEEEEEECHHHHHHHHHHHHHHHCCCEEEEEEEECCCEEC
Q ss_conf 326999998083100038999886300142443368369999996043332204687676357418889854354643
Q gi|254780321|r 410 EPWIQVTIITPNEYLGSILKLCQERRGIQIDMSHLDNRAMIVYELPLNEVIFDFYDRLKSVSKGYASFDYNVIDYRDS 487 (606)
Q Consensus 410 EPi~~~~I~~P~ey~G~Vm~~l~~RRG~~~~m~~~~~~~~i~~~vPl~Eli~~f~~~LkS~T~G~as~~ye~~~Y~~~ 487 (606)
|||++++|.+|++|+|+||++|++|||++.+|+..++++.|++++|++|+ +||+++|||+|+|+|+|+|+|+||++.
T Consensus 1 EP~~~~~I~~p~e~~g~v~~~l~~rrg~i~~~~~~~~~~~i~~~iP~~e~-~gf~~~Lrs~T~G~a~~~~~f~~y~~~ 77 (78)
T cd03713 1 EPIMKVEVTVPEEYMGDVIGDLSSRRGQILGTESRGGWKVIKAEVPLAEM-FGYSTDLRSLTQGRGSFTMEFSHYEEV 77 (78)
T ss_pred CCEEEEEEEECHHHHHHHHHHHHHCCCCEECCEECCCEEEEEEECCHHHH-HCHHHHHHHHCCCCEEEEEEECCCCCC
T ss_conf 99799999978899999999998706822530335880999999086887-478999887588918999883443008
No 86
>cd03711 Tet_C Tet_C: C-terminus of ribosomal protection proteins Tet(M) and Tet(O). This domain has homology to the C terminal domains of the elongation factors EF-G and EF-2. Tet(M) and Tet(O) catalyze the release of tetracycline (Tc) from the ribosome in a GTP-dependent manner thereby mediating Tc resistance. Tcs are broad-spectrum antibiotics. Typical Tcs bind to the ribosome and inhibit the elongation phase of protein synthesis, by inhibiting the occupation of site A by aminoacyl-tRNA.
Probab=99.80 E-value=1.9e-19 Score=150.11 Aligned_cols=77 Identities=17% Similarity=0.289 Sum_probs=75.0
Q ss_pred CCEEEEEEEECCCCCHHHHHHHHHHHHEEECCCCCCCEEEEEEEECHHHHHHHHHHHHHHHCCCEEEEEEEECCCEEC
Q ss_conf 326999998083100038999886300142443368369999996043332204687676357418889854354643
Q gi|254780321|r 410 EPWIQVTIITPNEYLGSILKLCQERRGIQIDMSHLDNRAMIVYELPLNEVIFDFYDRLKSVSKGYASFDYNVIDYRDS 487 (606)
Q Consensus 410 EPi~~~~I~~P~ey~G~Vm~~l~~RRG~~~~m~~~~~~~~i~~~vPl~Eli~~f~~~LkS~T~G~as~~ye~~~Y~~~ 487 (606)
|||++++|.+|++|+|+||++|++|||++.+++..+++++|++++|++|+ +||.++|+|+|+|+|+|+++|+||+|.
T Consensus 1 EPi~~~~i~vP~e~~G~v~~~L~~rrg~i~~~~~~~~~~~i~~~~P~ae~-~~y~~~Lrs~T~G~g~~~~~f~~Y~Pc 77 (78)
T cd03711 1 EPYLRFELEVPQDALGRAMSDLAKMGATFEDPQIKGDEVTLEGTIPVATS-QDYQSELPSYTHGEGVLETEFKGYRPC 77 (78)
T ss_pred CCEEEEEEECCHHHHHHHHHHHHHCCCEEECCEECCCEEEEEEEECHHHH-HHHHHHHHHHCCCEEEEEEEECCEECC
T ss_conf 98499999825898999999998769887680883996999999877886-318897175488859999897973378
No 87
>pfam00679 EFG_C Elongation factor G C-terminus. This domain includes the carboxyl terminal regions of Elongation factor G, elongation factor 2 and some tetracycline resistance proteins and adopt a ferredoxin-like fold.
Probab=99.80 E-value=1.1e-19 Score=151.54 Aligned_cols=82 Identities=34% Similarity=0.574 Sum_probs=77.4
Q ss_pred HHCCEEEEEEEECCCCCHHHHHHHHHHHHEEECCCCC-CCEEEEEEEECHHHHHHHHHHHHHHHCCCEEEEEEEECCCEE
Q ss_conf 6232699999808310003899988630014244336-836999999604333220468767635741888985435464
Q gi|254780321|r 408 LREPWIQVTIITPNEYLGSILKLCQERRGIQIDMSHL-DNRAMIVYELPLNEVIFDFYDRLKSVSKGYASFDYNVIDYRD 486 (606)
Q Consensus 408 i~EPi~~~~I~~P~ey~G~Vm~~l~~RRG~~~~m~~~-~~~~~i~~~vPl~Eli~~f~~~LkS~T~G~as~~ye~~~Y~~ 486 (606)
++|||++++|.+|++|+|+||++|++|||++.++++. ++++.|+|.+|++|++ ||+++|+|+|+|+|+|+|+|.+|++
T Consensus 2 llEP~~~~~i~~p~~~~g~v~~~l~~rrg~i~~~~~~~~~~~~i~~~iP~~~~~-gf~~~L~s~T~G~a~~~~~f~~y~~ 80 (89)
T pfam00679 2 LLEPIMKVEITVPEEYLGDVIGDLNKRRGEILDMEPIGGGRVVIEAEVPLAELF-GFSTELRSLTQGRGSFSMEFSGYEP 80 (89)
T ss_pred EECCEEEEEEEECHHHHHHHHHHHHHHCCEEECCEECCCCEEEEEEEEEHHHHH-HHHHHHHHCCCCCCEEEEEECCEEE
T ss_conf 678289999998889999999999870683557477589879999997215766-7875886138997189999535037
Q ss_pred CCEE
Q ss_conf 3667
Q gi|254780321|r 487 SDLV 490 (606)
Q Consensus 487 ~dlv 490 (606)
....
T Consensus 81 ~~~~ 84 (89)
T pfam00679 81 VPGD 84 (89)
T ss_pred CCCC
T ss_conf 8979
No 88
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.77 E-value=8.7e-18 Score=138.88 Aligned_cols=149 Identities=26% Similarity=0.295 Sum_probs=106.1
Q ss_pred EEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHCCEEEEEEEEEEEECCCCCEEEEEEEECCCCCHHH--
Q ss_conf 998013898778899999982980544443113058677987195052327999974378843899996178730027--
Q gi|254780321|r 15 SIVAHIDHGKSTLADRFIQHCRGLTEREMSSQVLDNMDIERERGITIKAQTVRLNYTSTDAKDYQLNLIDTPGHVDFT-- 92 (606)
Q Consensus 15 ~IiaHvDhGKTTL~d~lL~~tg~i~~~~~~~~vlD~~~~EreRGITIka~~~~~~~~~~~~~~y~iNlIDTPGH~DF~-- 92 (606)
||+|...+|||||..+|+ |. +... +.+ .-|.|.......+. ++++.+.|+||||+.+..
T Consensus 1 aivG~pN~GKSsL~N~l~---~~--~~~i---vs~------~~gtTr~~~~~~~~-----~~~~~~~lvDTpG~~~~~~~ 61 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLT---GR--RDAI---VED------TPGVTRDRIYGEAE-----WGGREFILIDTGGIEPDDEG 61 (157)
T ss_pred CCCCCCCCCHHHHHHHHH---CC--CCEE---EEC------CCCCEEEEEEEEEE-----ECCEEEEEEECCCCCCCCCH
T ss_conf 904899988999999995---88--7535---407------99935667899999-----99988999857875556606
Q ss_pred --HH----HHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf --99----999997302689999868788655899999999709967998326788753211338887755532232100
Q gi|254780321|r 93 --YE----VSRSLSACEGSLLVVDATQGVEAQTLANVYQAIDNNHEIITVLNKADLPSADPDRVKKQIEETIGISTEDAL 166 (606)
Q Consensus 93 --~E----V~r~l~a~dgaiLvVdA~~Gvq~QT~~~~~~A~~~~l~~I~viNKiD~~~A~~e~v~~ei~~~~g~~~~~ii 166 (606)
.+ ...++.-+|.+++|+||.+|+..+....+....+.+.|+++|+||+|+.. .+....++.. ++ -.+++
T Consensus 62 ~~~~~~~~~~~~i~~ad~il~viDa~~~~~~~d~~i~~~l~~~~kp~i~v~NK~D~~~--~~~~~~~~~~-l~--~~~~i 136 (157)
T cd01894 62 ISKEIREQAELAIEEADVILFVVDGREGLTPADEEIAKYLRKSKKPVILVVNKVDNIK--EEDEAAEFYS-LG--FGEPI 136 (157)
T ss_pred HHHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCC--CHHHHHHHHH-CC--CCCEE
T ss_conf 7899999999999865907999989999998999999999984798099997871658--6456999996-59--99759
Q ss_pred HHHHHCCCCCCHHHHHHHHHH
Q ss_conf 011100223200678776321
Q gi|254780321|r 167 LVSAKTGEGIPLLLERIVQQL 187 (606)
Q Consensus 167 ~vSAktG~GV~~LLd~Iv~~i 187 (606)
++||++|.|++.|+|.|++.+
T Consensus 137 ~iSA~~g~Gid~L~~~I~~~L 157 (157)
T cd01894 137 PISAEHGRGIGDLLDAILELL 157 (157)
T ss_pred EEEEECCCCHHHHHHHHHHHC
T ss_conf 999658949999999999659
No 89
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.77 E-value=1.4e-17 Score=137.54 Aligned_cols=155 Identities=26% Similarity=0.274 Sum_probs=105.9
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHCCEEEEEEEEEEEECCCCCEEEEEEEECCCCCHH-
Q ss_conf 7999801389877889999998298054444311305867798719505232799997437884389999617873002-
Q gi|254780321|r 13 NFSIVAHIDHGKSTLADRFIQHCRGLTEREMSSQVLDNMDIERERGITIKAQTVRLNYTSTDAKDYQLNLIDTPGHVDF- 91 (606)
Q Consensus 13 N~~IiaHvDhGKTTL~d~lL~~tg~i~~~~~~~~vlD~~~~EreRGITIka~~~~~~~~~~~~~~y~iNlIDTPGH~DF- 91 (606)
++||+|+..+|||||..+|+ |. +.. .+.+ .-|.|-. .+.-.+ .++++++.|+||||...-
T Consensus 5 ~V~ivG~pN~GKSsL~N~L~---~~--~~a---~vs~------~~gtTr~--~~~~~~---~~~~~~~~l~DtpG~~~~~ 65 (168)
T cd04163 5 FVAIVGRPNVGKSTLLNALV---GQ--KIS---IVSP------KPQTTRN--RIRGIY---TDDDAQIIFVDTPGIHKPK 65 (168)
T ss_pred EEEEECCCCCCHHHHHHHHH---CC--CEE---EECC------CCCEEEC--CCEEEE---EECCEEEEEEECCCCCCCH
T ss_conf 89999999999999999995---89--703---3238------8982634--423689---8499789999589866514
Q ss_pred -------HHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCHHHHHHHHHH-HHHH
Q ss_conf -------79999999730268999986878865589999999970996799832678875321133888775553-2232
Q gi|254780321|r 92 -------TYEVSRSLSACEGSLLVVDATQGVEAQTLANVYQAIDNNHEIITVLNKADLPSADPDRVKKQIEETIG-ISTE 163 (606)
Q Consensus 92 -------~~EV~r~l~a~dgaiLvVdA~~Gvq~QT~~~~~~A~~~~l~~I~viNKiD~~~A~~e~v~~ei~~~~g-~~~~ 163 (606)
.....+++.-||.+++|+||.+|...+....+....+.+.|+++|+||+|+... .+...+.++.... ....
T Consensus 66 ~~~~~~~~~~~~~~l~~~D~il~vvD~~~~~~~~d~~i~~~l~~~~~~~iivlNK~Dl~~~-~~~~~~~~~~~~~~~~~~ 144 (168)
T cd04163 66 KKLGERMVKAAWSALKDVDLVLFVVDASEPIGEGDEFILELLKKSKTPVILVLNKIDLVKD-KEDLLPLLEKLKELGPFA 144 (168)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECEEECCC-HHHHHHHHHHHHHHCCCC
T ss_conf 5677899999998651365589999789898667799999999809985999978870478-778999999999618999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHH
Q ss_conf 100011100223200678776321
Q gi|254780321|r 164 DALLVSAKTGEGIPLLLERIVQQL 187 (606)
Q Consensus 164 ~ii~vSAktG~GV~~LLd~Iv~~i 187 (606)
+++++||++|.|+++|+++|++++
T Consensus 145 ~vi~iSA~~g~Gid~L~~~i~~~L 168 (168)
T cd04163 145 EIFPISALKGENVDELLEEIVKYL 168 (168)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHC
T ss_conf 689997778969999999999539
No 90
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.76 E-value=1.1e-17 Score=138.21 Aligned_cols=154 Identities=25% Similarity=0.249 Sum_probs=107.8
Q ss_pred EECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHCCEEEEEEEEEEEECCCCCEEEEEEEECCCCCHH----
Q ss_conf 9801389877889999998298054444311305867798719505232799997437884389999617873002----
Q gi|254780321|r 16 IVAHIDHGKSTLADRFIQHCRGLTEREMSSQVLDNMDIERERGITIKAQTVRLNYTSTDAKDYQLNLIDTPGHVDF---- 91 (606)
Q Consensus 16 IiaHvDhGKTTL~d~lL~~tg~i~~~~~~~~vlD~~~~EreRGITIka~~~~~~~~~~~~~~y~iNlIDTPGH~DF---- 91 (606)
|||+..+|||||..+|+ |. +... + ....|.|.......+.+ . ....+.|+||||+.+.
T Consensus 1 ivG~~N~GKStL~N~L~---~~--~~~~---v------s~~~gtT~~~~~~~~~~--~--~~~~i~lvDtpG~~~~~~~~ 62 (163)
T cd00880 1 LFGRTNAGKSSLLNALL---GQ--EVAI---V------SPVPGTTTDPVEYVWEL--G--PLGPVVLIDTPGIDEAGGLG 62 (163)
T ss_pred CCCCCCCCHHHHHHHHH---CC--CCCE---E------CCCCCEECCCEEEEEEE--C--CCCEEEEEECCCCCCCCCHH
T ss_conf 91979989999999995---89--9610---1------69899865645899995--4--78659997279852223101
Q ss_pred ---HHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCHH-HHH-HHHHHHHHHHHH
Q ss_conf ---799999997302689999868788655899999999709967998326788753211338-887-755532232100
Q gi|254780321|r 92 ---TYEVSRSLSACEGSLLVVDATQGVEAQTLANVYQAIDNNHEIITVLNKADLPSADPDRVK-KQI-EETIGISTEDAL 166 (606)
Q Consensus 92 ---~~EV~r~l~a~dgaiLvVdA~~Gvq~QT~~~~~~A~~~~l~~I~viNKiD~~~A~~e~v~-~ei-~~~~g~~~~~ii 166 (606)
...+.+++.-+|.+++||||..+...+....+......+.|+|+|+||+|+...+.++.. +.. .........+++
T Consensus 63 ~~~~~~~~~~~~~~D~il~viD~~~~~~~~~~~~l~~l~~~~~p~i~v~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~i~ 142 (163)
T cd00880 63 REREELARRVLERADLILFVVDADLRADEEEEKLLELLRERGKPVLLVLNKIDLLPEEEEEELLELRLLILLLLLGLPVI 142 (163)
T ss_pred HHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHHCCCEEEEEECEECCCHHHHHHHHHHHHHHHHHCCCCEEE
T ss_conf 68999999999868989999878999755669999999971974278853420678789999999999998767998599
Q ss_pred HHHHHCCCCCCHHHHHHHHHH
Q ss_conf 011100223200678776321
Q gi|254780321|r 167 LVSAKTGEGIPLLLERIVQQL 187 (606)
Q Consensus 167 ~vSAktG~GV~~LLd~Iv~~i 187 (606)
++||++|.|+++|++.|++.+
T Consensus 143 ~iSA~~g~gi~~L~~~i~e~L 163 (163)
T cd00880 143 AVSALTGEGIDELREALIEAL 163 (163)
T ss_pred EEECCCCCCHHHHHHHHHHHC
T ss_conf 997898979999999999519
No 91
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.76 E-value=1.1e-17 Score=138.14 Aligned_cols=153 Identities=22% Similarity=0.324 Sum_probs=103.4
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHCCEEEEEEEEEEEECCCCCEEEEEEEECCCC--C--
Q ss_conf 999801389877889999998298054444311305867798719505232799997437884389999617873--0--
Q gi|254780321|r 14 FSIVAHIDHGKSTLADRFIQHCRGLTEREMSSQVLDNMDIERERGITIKAQTVRLNYTSTDAKDYQLNLIDTPGH--V-- 89 (606)
Q Consensus 14 ~~IiaHvDhGKTTL~d~lL~~tg~i~~~~~~~~vlD~~~~EreRGITIka~~~~~~~~~~~~~~y~iNlIDTPGH--~-- 89 (606)
|||+|+..+|||||.-+|+-... +.. +. ..-|.|-. +.+...+ ..+.|+||||. .
T Consensus 2 IaivG~pN~GKSTL~N~L~~~~~-~~~------vs------~~~gtTr~-----i~~~~~~---~~~~~vDtPG~g~~~~ 60 (170)
T cd01876 2 IAFAGRSNVGKSSLINALTNRKK-LAR------TS------KTPGKTQL-----INFFNVN---DKFRLVDLPGYGYAKV 60 (170)
T ss_pred EEEECCCCCCHHHHHHHHHCCCC-EEE------EE------CCCCEEEE-----EEEEEEC---CEEEEEECCCCHHCCC
T ss_conf 89998999999999999968996-278------60------78977852-----0588538---7799996578401016
Q ss_pred ------HHHHHHHHHHH---HCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCC-CCCCCHHHHHHHHHH
Q ss_conf ------02799999997---30268999986878865589999999970996799832678875-321133888775553
Q gi|254780321|r 90 ------DFTYEVSRSLS---ACEGSLLVVDATQGVEAQTLANVYQAIDNNHEIITVLNKADLPS-ADPDRVKKQIEETIG 159 (606)
Q Consensus 90 ------DF~~EV~r~l~---a~dgaiLvVdA~~Gvq~QT~~~~~~A~~~~l~~I~viNKiD~~~-A~~e~v~~ei~~~~g 159 (606)
.|.....+.++ .++.+++|+||..|++.|.+..+....+.+.|+|+|+||+|+-. .+..+...++...++
T Consensus 61 ~~~~~~~~~~~~~~~l~~~~~~~~vi~viD~~~~~~~~d~~i~~~l~~~~kp~iiVlNKiDlv~~~~~~~~~~~~~~~l~ 140 (170)
T cd01876 61 SKEVKEKWGKLIEEYLENRENLKGVVLLIDSRHGPTEIDLEMLDWLEELGIPFLVVLTKADKLKKSELAKALKEIKKELK 140 (170)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEEEEECCCHHHHHHHHHHHHHHHH
T ss_conf 87799999999999998406334999999632237486899999998769987999986753787789999999999874
Q ss_pred H--HHHHHHHHHHHCCCCCCHHHHHHHHHH
Q ss_conf 2--232100011100223200678776321
Q gi|254780321|r 160 I--STEDALLVSAKTGEGIPLLLERIVQQL 187 (606)
Q Consensus 160 ~--~~~~ii~vSAktG~GV~~LLd~Iv~~i 187 (606)
. ...+++++||++|.||++|+++|.+++
T Consensus 141 ~~~~~~~ii~iSA~~g~gi~~L~~~I~~~L 170 (170)
T cd01876 141 LFEIDPPIILFSSLKGQGIDELRALIEKWL 170 (170)
T ss_pred CCCCCCEEEEEECCCCCCHHHHHHHHHHHC
T ss_conf 217998399998899977999999999859
No 92
>PRK00089 era GTP-binding protein Era; Reviewed
Probab=99.76 E-value=2.8e-17 Score=135.51 Aligned_cols=158 Identities=25% Similarity=0.290 Sum_probs=113.0
Q ss_pred CEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHCCEEEEEEEEEEEECCCCCEEEEEEEECCCCCH
Q ss_conf 31799980138987788999999829805444431130586779871950523279999743788438999961787300
Q gi|254780321|r 11 IRNFSIVAHIDHGKSTLADRFIQHCRGLTEREMSSQVLDNMDIERERGITIKAQTVRLNYTSTDAKDYQLNLIDTPGHVD 90 (606)
Q Consensus 11 IRN~~IiaHvDhGKTTL~d~lL~~tg~i~~~~~~~~vlD~~~~EreRGITIka~~~~~~~~~~~~~~y~iNlIDTPGH~D 90 (606)
-=.+||||--..|||||.-+|+-.--++..+.. |-|-. .+.-.+ .++++++.|+||||-.+
T Consensus 8 sG~VaivG~PNvGKSTL~N~l~~~k~siVS~k~--------------~TTR~--~i~gi~---~~~~~q~i~iDTpGi~~ 68 (296)
T PRK00089 8 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKP--------------QTTRH--RIRGIV---TEDDAQIIFVDTPGIHK 68 (296)
T ss_pred EEEEEEECCCCCCHHHHHHHHHCCCEEEECCCC--------------CCCCC--CEEEEE---EECCEEEEEEECCCCCC
T ss_conf 799999989998889999999689617614959--------------98728--389999---97997999998998667
Q ss_pred --------HHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCHHHHHHHHHH-HH
Q ss_conf --------279999999730268999986878865589999999970996799832678875321133888775553-22
Q gi|254780321|r 91 --------FTYEVSRSLSACEGSLLVVDATQGVEAQTLANVYQAIDNNHEIITVLNKADLPSADPDRVKKQIEETIG-IS 161 (606)
Q Consensus 91 --------F~~EV~r~l~a~dgaiLvVdA~~Gvq~QT~~~~~~A~~~~l~~I~viNKiD~~~A~~e~v~~ei~~~~g-~~ 161 (606)
+...+.+++.-+|-+++|+||.+|+..|....+....+.+.|+|+|+||+|+. +.+++.+.+.++-. +.
T Consensus 69 ~~~~l~~~~~~~~~~ai~~aDlil~viD~~~~~~~~d~~i~~~l~~~~kp~ilviNKiDlv--~k~~l~~~~~~l~~~~~ 146 (296)
T PRK00089 69 PKRALNRAMNKAAWSSLKDVDLVLFVVDADEKIGPGDEFILEKLKKVKTPVILVLNKIDLV--DKEELLPLLEELSELMD 146 (296)
T ss_pred CHHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEEHHHHC--CHHHHHHHHHHHHHHCC
T ss_conf 4677878999999999975999999985788989889999998887499889995478842--89889999999985379
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHC
Q ss_conf 3210001110022320067877632100
Q gi|254780321|r 162 TEDALLVSAKTGEGIPLLLERIVQQLPS 189 (606)
Q Consensus 162 ~~~ii~vSAktG~GV~~LLd~Iv~~iP~ 189 (606)
..+++++||++|.|++.|++.|.+++|+
T Consensus 147 f~~if~iSA~~~~gi~~L~~~l~~~lp~ 174 (296)
T PRK00089 147 FAEIVPISALKGDNVDELLDLIAKYLPE 174 (296)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHCCC
T ss_conf 7659999677888989999999986798
No 93
>cd04096 eEF2_snRNP_like_C eEF2_snRNP_like_C: this family represents a C-terminal domain of eukaryotic elongation factor 2 (eEF-2) and a homologous domain of the spliceosomal human 116kD U5 small nuclear ribonucleoprotein (snRNP) protein (U5-116 kD) and, its yeast counterpart Snu114p. Yeast Snu114p is essential for cell viability and for splicing in vivo. U5-116 kD binds GTP. Experiments suggest that GTP binding and probably GTP hydrolysis is important for the function of the U5-116 kD/Snu114p. In complex with GTP, EF-2 promotes the translocation step of translation. During translocation the peptidyl-tRNA is moved from the A site to the P site, the uncharged tRNA from the P site to the E-site and, the mRNA is shifted one codon relative to the ribosome.
Probab=99.75 E-value=3.9e-18 Score=141.21 Aligned_cols=77 Identities=26% Similarity=0.316 Sum_probs=72.9
Q ss_pred CCEEEEEEEECCCCCHHHHHHHHHHHHEEECCCCCC--CEEEEEEEECHHHHHHHHHHHHHHHCCCEEEEEEEECCCEEC
Q ss_conf 326999998083100038999886300142443368--369999996043332204687676357418889854354643
Q gi|254780321|r 410 EPWIQVTIITPNEYLGSILKLCQERRGIQIDMSHLD--NRAMIVYELPLNEVIFDFYDRLKSVSKGYASFDYNVIDYRDS 487 (606)
Q Consensus 410 EPi~~~~I~~P~ey~G~Vm~~l~~RRG~~~~m~~~~--~~~~i~~~vPl~Eli~~f~~~LkS~T~G~as~~ye~~~Y~~~ 487 (606)
|||++++|.+|++|+|+|++++++|||++.+++... +...|.|.+|++|+ +||.++|+|+|+|.|+|.++|+||++-
T Consensus 1 EPi~~veI~~p~~~~g~V~~~L~~RRG~I~~~~~~~g~~~~~I~a~vP~~e~-fg~~~~LRs~T~G~a~~~~~F~~y~~v 79 (80)
T cd04096 1 EPIYLVEIQCPEDALGKVYSVLSKRRGHVLSEEPKEGTPLFEIKAYLPVIES-FGFETDLRSATSGQAFPQLVFSHWEIV 79 (80)
T ss_pred CCEEEEEEEECHHHHHHHHHHHHHCCCEEEEEEEECCCCEEEEEEEECHHHH-HCHHHHHHHHCCCCCEEEEEECCCCCC
T ss_conf 9859999998889988999988447858843100069976999999057997-184899996577971799896423228
No 94
>cd01514 Elongation_Factor_C Elongation factor G C-terminus. This domain includes the carboxyl terminal regions of elongation factors (EFs) bacterial EF-G, eukaryotic and archeal EF-2 and eukaryotic mitochondrial mtEFG1s and mtEFG2s. This group also includes proteins similar to the ribosomal protection proteins Tet(M) and Tet(O), BipA, LepA and, spliceosomal proteins: human 116kD U5 small nuclear ribonucleoprotein (snRNP) protein (U5-116 kD) and yeast counterpart Snu114p. This domain adopts a ferredoxin-like fold consisting of an alpha-beta sandwich with anti-parallel beta-sheets, resembling the topology of domain III found in the elongation factors EF-G and eukaryotic EF-2, with which it forms the C-terminal block. The two domains however are not superimposable and domain III lacks some of the characteristics of this domain. EF-2/EF-G in complex with GTP, promotes the translocation step of translation. During translocation the peptidyl-tRNA is moved from the A site to the P site, the
Probab=99.74 E-value=5e-18 Score=140.51 Aligned_cols=78 Identities=37% Similarity=0.626 Sum_probs=75.1
Q ss_pred CCEEEEEEEECCCCCHHHHHHHHHHHHEEECCCCCC-CEEEEEEEECHHHHHHHHHHHHHHHCCCEEEEEEEECCCEECC
Q ss_conf 326999998083100038999886300142443368-3699999960433322046876763574188898543546436
Q gi|254780321|r 410 EPWIQVTIITPNEYLGSILKLCQERRGIQIDMSHLD-NRAMIVYELPLNEVIFDFYDRLKSVSKGYASFDYNVIDYRDSD 488 (606)
Q Consensus 410 EPi~~~~I~~P~ey~G~Vm~~l~~RRG~~~~m~~~~-~~~~i~~~vPl~Eli~~f~~~LkS~T~G~as~~ye~~~Y~~~d 488 (606)
|||++++|.+|++|+|.||++|++|||++.+++..+ ++..|.|.+|++|+ +||+++|+|+|+|+|+|+++|.+|++.+
T Consensus 1 EP~~~~~I~~p~~~~g~v~~~l~~rrg~i~~~~~~~~~~~~i~~~iP~~e~-~g~~~~Lrs~T~G~a~~~~~f~~y~~~~ 79 (79)
T cd01514 1 EPIMKVEITVPEEYLGAVIGDLSKRRGEILGMEPRGTGRVVIKAELPLAEM-FGFATDLRSLTQGRASFSMEFSHYEPVP 79 (79)
T ss_pred CCEEEEEEEECHHHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEEECHHHH-CCHHHHHHCCCCCEEEEEEEECCEEECC
T ss_conf 998999999888999999999886177798778648985999999746886-2925274363799169999951305186
No 95
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.72 E-value=1.6e-16 Score=130.32 Aligned_cols=155 Identities=25% Similarity=0.305 Sum_probs=114.4
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHCCEEEEEEEEEEEECCCCCEEEEEEEECCCCCH---
Q ss_conf 99980138987788999999829805444431130586779871950523279999743788438999961787300---
Q gi|254780321|r 14 FSIVAHIDHGKSTLADRFIQHCRGLTEREMSSQVLDNMDIERERGITIKAQTVRLNYTSTDAKDYQLNLIDTPGHVD--- 90 (606)
Q Consensus 14 ~~IiaHvDhGKTTL~d~lL~~tg~i~~~~~~~~vlD~~~~EreRGITIka~~~~~~~~~~~~~~y~iNlIDTPGH~D--- 90 (606)
+||+|--..|||||--+|+..-.++... .-|.|--.....+. |+++.++||||||-.+
T Consensus 2 VaIvGrpNVGKStLfN~L~~~~~aIv~~--------------~~G~TRD~~~~~~~-----~~~~~~~liDT~G~~~~~~ 62 (429)
T TIGR03594 2 VAIVGRPNVGKSTLFNRLTGKRDAIVAD--------------TPGVTRDRKYGDAE-----WGGREFILIDTGGIEEDDD 62 (429)
T ss_pred EEEECCCCCCHHHHHHHHHCCCEEECCC--------------CCCCCCCCEEEEEE-----ECCEEEEEEECCCCCCCCH
T ss_conf 8999999987899999987886176159--------------89988773379999-----9990799998989898743
Q ss_pred -H----HHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf -2----79999999730268999986878865589999999970996799832678875321133888775553223210
Q gi|254780321|r 91 -F----TYEVSRSLSACEGSLLVVDATQGVEAQTLANVYQAIDNNHEIITVLNKADLPSADPDRVKKQIEETIGISTEDA 165 (606)
Q Consensus 91 -F----~~EV~r~l~a~dgaiLvVdA~~Gvq~QT~~~~~~A~~~~l~~I~viNKiD~~~A~~e~v~~ei~~~~g~~~~~i 165 (606)
| ...+..++.-+|.+++||||.+|+.++-...+......+-++|+|+||+|... .+.. +.|...+.-.+.
T Consensus 63 ~~~~~~~~q~~~ai~~aDlIlfVvD~~~git~~D~~i~~~Lrk~~k~vilviNK~D~~~--~~~~---~~ef~~LG~~~~ 137 (429)
T TIGR03594 63 GLDKQIREQAEIAIEEADVILFVVDGREGLTPEDEEIAKWLRKSGKPVILVANKIDGKK--EDAV---AAEFYSLGFGEP 137 (429)
T ss_pred HHHHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCC--HHHH---HHHHHHHCCCCE
T ss_conf 78999999999999867999999857768986799999999871997899998346753--1456---999998368986
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHCCCC
Q ss_conf 001110022320067877632100011
Q gi|254780321|r 166 LLVSAKTGEGIPLLLERIVQQLPSPTS 192 (606)
Q Consensus 166 i~vSAktG~GV~~LLd~Iv~~iP~P~~ 192 (606)
+++||.+|.|+++|+|.|.+.+|....
T Consensus 138 i~iSA~h~~Gi~~L~~~i~~~l~~~~~ 164 (429)
T TIGR03594 138 IPISAEHGRGIGDLLDAILELLPEEEE 164 (429)
T ss_pred EEEEECCCCCHHHHHHHHHHHCCCCCC
T ss_conf 887420467999999999965886655
No 96
>PRK00454 engB GTPase EngB; Reviewed
Probab=99.72 E-value=1.5e-16 Score=130.52 Aligned_cols=163 Identities=20% Similarity=0.298 Sum_probs=110.8
Q ss_pred CCCCHHHCEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHCCEEEEEEEEEEEECCCCCEEEEEEE
Q ss_conf 89985253179998013898778899999982980544443113058677987195052327999974378843899996
Q gi|254780321|r 4 KPTPLSRIRNFSIVAHIDHGKSTLADRFIQHCRGLTEREMSSQVLDNMDIERERGITIKAQTVRLNYTSTDAKDYQLNLI 83 (606)
Q Consensus 4 ~~~p~~~IRN~~IiaHvDhGKTTL~d~lL~~tg~i~~~~~~~~vlD~~~~EreRGITIka~~~~~~~~~~~~~~y~iNlI 83 (606)
+..|..+.=-+||+|--..|||||.-+|+ |. ++-+ .+.+ ..|.|- .+.|...+ ..+.||
T Consensus 17 ~~~p~~~~p~VaivGrpNvGKSTL~N~L~---g~--k~~a--~vs~------~pgtTr-----~i~~~~~~---~~~~lv 75 (196)
T PRK00454 17 KQLPPDDGPEIAFAGRSNVGKSSLINALT---NR--KNLA--RTSK------TPGRTQ-----LINFFEVN---DGLRLV 75 (196)
T ss_pred HHCCCCCCCEEEEECCCCCCHHHHHHHHH---CC--CCEE--EEEC------CCCCEE-----EEEEEECC---CCEEEE
T ss_conf 78999889689998489888999999986---89--7369--9747------888607-----98887618---833899
Q ss_pred ECCCC----------CHHHHHHHHHH---HHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCC-CCCCC
Q ss_conf 17873----------00279999999---730268999986878865589999999970996799832678875-32113
Q gi|254780321|r 84 DTPGH----------VDFTYEVSRSL---SACEGSLLVVDATQGVEAQTLANVYQAIDNNHEIITVLNKADLPS-ADPDR 149 (606)
Q Consensus 84 DTPGH----------~DF~~EV~r~l---~a~dgaiLvVdA~~Gvq~QT~~~~~~A~~~~l~~I~viNKiD~~~-A~~e~ 149 (606)
||||+ ..|...+...| ...+.++++|||..|+..|-...+..+.+.+.+.++|+||+|+-. .+..+
T Consensus 76 DtpGyG~a~~~~~~~~~~~~~i~~yl~~~~~l~~villIDa~~g~~~~D~~i~~~l~~~~~p~iivlNKiD~l~~~~~~~ 155 (196)
T PRK00454 76 DLPGYGYAKVSKEEKEKWQKLIEEYLQKRENLKGVVLLIDSRHPLKELDLEMIEWLKEAGIPVLIVLTKADKLKKGERKK 155 (196)
T ss_pred ECCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEECCHHCCHHHHHH
T ss_conf 37997413277878889999999999962333638999971658988899999999862778599998725169789999
Q ss_pred HHHHHHHHHH--HHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q ss_conf 3888775553--2232100011100223200678776321
Q gi|254780321|r 150 VKKQIEETIG--ISTEDALLVSAKTGEGIPLLLERIVQQL 187 (606)
Q Consensus 150 v~~ei~~~~g--~~~~~ii~vSAktG~GV~~LLd~Iv~~i 187 (606)
...++.+.+. ....+++++||++|.|+++|++.|.+++
T Consensus 156 ~~~~i~~~l~~~~~~~~ii~ISA~~g~GI~eL~~~I~k~L 195 (196)
T PRK00454 156 LLKKVKKALARFAADPEVLLFSSLKKTGIDELRAAIAKWL 195 (196)
T ss_pred HHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 9999999976125898289996999979899999999985
No 97
>PRK03003 engA GTP-binding protein EngA; Reviewed
Probab=99.72 E-value=1.6e-16 Score=130.45 Aligned_cols=161 Identities=22% Similarity=0.284 Sum_probs=117.9
Q ss_pred CCHHHCEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHCCEEEEEEEEEEEECCCCCEEEEEEEEC
Q ss_conf 98525317999801389877889999998298054444311305867798719505232799997437884389999617
Q gi|254780321|r 6 TPLSRIRNFSIVAHIDHGKSTLADRFIQHCRGLTEREMSSQVLDNMDIERERGITIKAQTVRLNYTSTDAKDYQLNLIDT 85 (606)
Q Consensus 6 ~p~~~IRN~~IiaHvDhGKTTL~d~lL~~tg~i~~~~~~~~vlD~~~~EreRGITIka~~~~~~~~~~~~~~y~iNlIDT 85 (606)
-|-..+=-+||||--.-|||||--||+..-.+|-. | +-|.|=-..... ..|.+..+++|||
T Consensus 33 ~~~~~lPiVaIvGRPNVGKStLFNrL~~~~~AIV~--------d------~pGvTRDr~~~~-----~~~~~~~f~lvDT 93 (474)
T PRK03003 33 EASGPLPVVAVVGRPNVGKSTLVNRILGRREAVVE--------D------IPGVTRDRVSYD-----AEWNGRRFVVQDT 93 (474)
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHCCCEEEEC--------C------CCCCCCCCEEEE-----EEECCCEEEEEEC
T ss_conf 66799998999899998889999998688638805--------9------899880863689-----9999928999979
Q ss_pred CCCCH----HH----HHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCHHHHHHHH
Q ss_conf 87300----27----99999997302689999868788655899999999709967998326788753211338887755
Q gi|254780321|r 86 PGHVD----FT----YEVSRSLSACEGSLLVVDATQGVEAQTLANVYQAIDNNHEIITVLNKADLPSADPDRVKKQIEET 157 (606)
Q Consensus 86 PGH~D----F~----~EV~r~l~a~dgaiLvVdA~~Gvq~QT~~~~~~A~~~~l~~I~viNKiD~~~A~~e~v~~ei~~~ 157 (606)
||... |. ..+..++.-+|.+|+||||.+|+.+.-...+......+-++|+|+||+|-+.. +. ...++
T Consensus 94 gG~~~~~~~~~~~i~~q~~~ai~eaD~IlfVvD~~~glt~~D~eia~~LRk~~kpviLVvNK~D~~~~--~~---~~~ef 168 (474)
T PRK03003 94 GGWEPDAKGLQALVAEQAEVAMRTADAVLFVVDATVGATATDEAVARLLRRSGKPVFLAANKVDSERG--EA---DAAAL 168 (474)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCH--HH---HHHHH
T ss_conf 99999747899999999999998699999999689898878999999987539977998675566210--23---48999
Q ss_pred HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCC
Q ss_conf 532232100011100223200678776321000
Q gi|254780321|r 158 IGISTEDALLVSAKTGEGIPLLLERIVQQLPSP 190 (606)
Q Consensus 158 ~g~~~~~ii~vSAktG~GV~~LLd~Iv~~iP~P 190 (606)
+.+--.+.+++||.+|.|+.+|+|.|.+.+|..
T Consensus 169 y~LGf~~~i~ISA~Hg~Gi~dLld~i~~~l~~~ 201 (474)
T PRK03003 169 WSLGLGEPHPVSALHGRGVADLLDAVLAALPEV 201 (474)
T ss_pred HHHCCCCEEEEEHHCCCCHHHHHHHHHHHCCCC
T ss_conf 975799869960203789799999999748776
No 98
>PRK00093 engA GTP-binding protein EngA; Reviewed
Probab=99.71 E-value=2.9e-16 Score=128.66 Aligned_cols=155 Identities=25% Similarity=0.283 Sum_probs=113.9
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHCCEEEEEEEEEEEECCCCCEEEEEEEECCCCCH--
Q ss_conf 799980138987788999999829805444431130586779871950523279999743788438999961787300--
Q gi|254780321|r 13 NFSIVAHIDHGKSTLADRFIQHCRGLTEREMSSQVLDNMDIERERGITIKAQTVRLNYTSTDAKDYQLNLIDTPGHVD-- 90 (606)
Q Consensus 13 N~~IiaHvDhGKTTL~d~lL~~tg~i~~~~~~~~vlD~~~~EreRGITIka~~~~~~~~~~~~~~y~iNlIDTPGH~D-- 90 (606)
-+||+|--..|||||--||+..-.++.. | .-|.|--.....+. |+++.++||||||...
T Consensus 3 ~VaIvGrpNvGKStLfN~l~~~~~aIv~--------~------~~G~TRD~~~~~~~-----~~~~~~~lvDT~G~~~~~ 63 (438)
T PRK00093 3 VVAIVGRPNVGKSTLFNRLTGKRDAIVA--------D------TPGVTRDRIYGEAE-----WLGREFIVIDTGGIDPGD 63 (438)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCEEEEC--------C------CCCCCCCCEEEEEE-----ECCEEEEEEECCCCCCCC
T ss_conf 8999899998789999998688618715--------9------89998471589999-----999289999897989888
Q ss_pred ---HHHH----HHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf ---2799----999997302689999868788655899999999709967998326788753211338887755532232
Q gi|254780321|r 91 ---FTYE----VSRSLSACEGSLLVVDATQGVEAQTLANVYQAIDNNHEIITVLNKADLPSADPDRVKKQIEETIGISTE 163 (606)
Q Consensus 91 ---F~~E----V~r~l~a~dgaiLvVdA~~Gvq~QT~~~~~~A~~~~l~~I~viNKiD~~~A~~e~v~~ei~~~~g~~~~ 163 (606)
|... +..++.-+|.+|+||||.+|+.++-...+......+-++|+|+||+|.... .....|...+--.
T Consensus 64 ~~~~~~~i~~q~~~ai~~aDlIlfVvD~~~git~~D~~i~~~Lrk~~k~vilviNK~D~~~~-----~~~~~ef~~LGf~ 138 (438)
T PRK00093 64 EDGFEKQMREQALLAIEEADVILFVVDGRAGLTPADEEIAKILRKSNKPVILVVNKVDGKKM-----EADAYEFYSLGLG 138 (438)
T ss_pred CHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCH-----HHHHHHHHHHCCC
T ss_conf 20799999999999998589999998377689878999999999739978999975566320-----3459999983689
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHCCC
Q ss_conf 1000111002232006787763210001
Q gi|254780321|r 164 DALLVSAKTGEGIPLLLERIVQQLPSPT 191 (606)
Q Consensus 164 ~ii~vSAktG~GV~~LLd~Iv~~iP~P~ 191 (606)
+.+++||.+|.|+++|+|.|.+.+|...
T Consensus 139 ~~i~iSA~h~~Gi~~L~~~i~~~l~~~~ 166 (438)
T PRK00093 139 EPYPISAEHGRGIGDLLDAILELLPEEE 166 (438)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHCCCCC
T ss_conf 8188853056698999999985488554
No 99
>cd04092 mtEFG2_II_like mtEFG2_C: C-terminus of mitochondrial Elongation factor G2 (mtEFG2)-like proteins found in eukaryotes. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more complex than that in prokaryotes, with both cytoplasmic and mitochondrial elongation factors and multiple isoforms being expressed in certain species. Eukaryotic EF-2 operates in the cytosolic protein synthesis machinery of eukaryotes, EF-Gs in protein synthesis in bacteria. Eukaryotic mtEFG1 proteins show significant homology to bacterial EF-Gs. No clear phenotype has been found for mutants in the yeast homologue of mtEFG2, MEF2. There are two forms of mtEFG present in mammals (designated mtEFG1s and mtEFG2s) mtEFG1s are n
Probab=99.71 E-value=5.1e-18 Score=140.44 Aligned_cols=82 Identities=28% Similarity=0.421 Sum_probs=74.0
Q ss_pred CCCCCCCEEECCCCCEEEEEEECCCCCCCCCEEEEECCCCCCCCCCCCCCC-CCEEEEHHCCCCCHHHHHHCCCCCCCCC
Q ss_conf 331012101147572599998169873558458873355642101222335-5412401012471233220110024444
Q gi|254780321|r 200 LKALLIDSWYNSYLGVMVLVRIINGQLTKGQSIRLMGTNAKYQVERIGILT-PKMIDIEALYPGEIGVMIASIKEVSHTR 278 (606)
Q Consensus 200 l~alVfds~~D~~~G~I~~~RV~sG~lk~Gd~I~~~~~g~~~~v~~ig~~~-~~~~~v~~l~aGdVG~ii~gik~l~~~~ 278 (606)
|.|+|||+++|||+|+++|+||+||+|++||.|++.++++++++.+++.+. .++.+++++.|||||++. ++++++
T Consensus 1 l~AlVFK~~~D~~~G~ls~vRVysG~l~~g~~v~n~~~~~~ekv~~l~~~~g~~~~~v~~~~AGdI~av~----gl~~~~ 76 (83)
T cd04092 1 LCALAFKVVHDPQRGPLTFVRVYSGTLKRGSALYNTNTGKKERISRLLQPFADQYQEIPSLSAGNIGVIT----GLKQTR 76 (83)
T ss_pred CEEEEEEEECCCCCCCEEEEEEEECEECCCCEEEECCCCCEEEEEEEEEEECCCCEECCEECCCCEEEEE----CCCCCC
T ss_conf 9499998650798440999999707897899999688996297308889757993299789699899997----877860
Q ss_pred CCCEECC
Q ss_conf 5420004
Q gi|254780321|r 279 VGDTITD 285 (606)
Q Consensus 279 vGDTl~~ 285 (606)
+|||||+
T Consensus 77 tGDTltt 83 (83)
T cd04092 77 TGDTLVT 83 (83)
T ss_pred CCCEECC
T ss_conf 3889759
No 100
>PRK09518 bifunctional cytidylate kinase/GTP-binding protein; Reviewed
Probab=99.70 E-value=6.7e-16 Score=126.24 Aligned_cols=158 Identities=20% Similarity=0.298 Sum_probs=116.9
Q ss_pred HHCEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHCCEEEEEEEEEEEECCCCCEEEEEEEECCCC
Q ss_conf 25317999801389877889999998298054444311305867798719505232799997437884389999617873
Q gi|254780321|r 9 SRIRNFSIVAHIDHGKSTLADRFIQHCRGLTEREMSSQVLDNMDIERERGITIKAQTVRLNYTSTDAKDYQLNLIDTPGH 88 (606)
Q Consensus 9 ~~IRN~~IiaHvDhGKTTL~d~lL~~tg~i~~~~~~~~vlD~~~~EreRGITIka~~~~~~~~~~~~~~y~iNlIDTPGH 88 (606)
+.+=-+||||--.-|||||--||+..-.+|-. | .-|+|=- -.|...+|.+..+.||||.|.
T Consensus 277 ~~~p~VAIVGRPNVGKSTLFNRL~g~r~AIV~--------d------~pGvTRD-----R~~~~~~~~~~~F~lvDTGG~ 337 (714)
T PRK09518 277 EPVGTVAIVGRPNVGKSTLVNRILGRREAVVE--------D------TPGVTRD-----RVSYDAEWAGRDFKLVDTGGW 337 (714)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCEEEEC--------C------CCCCCCC-----CCEEEEEECCEEEEEEECCCC
T ss_conf 88887999899987689999886288416846--------9------8998837-----555799999916999979999
Q ss_pred C----HHHH----HHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 0----0279----9999997302689999868788655899999999709967998326788753211338887755532
Q gi|254780321|r 89 V----DFTY----EVSRSLSACEGSLLVVDATQGVEAQTLANVYQAIDNNHEIITVLNKADLPSADPDRVKKQIEETIGI 160 (606)
Q Consensus 89 ~----DF~~----EV~r~l~a~dgaiLvVdA~~Gvq~QT~~~~~~A~~~~l~~I~viNKiD~~~A~~e~v~~ei~~~~g~ 160 (606)
. +|.. .+..++.-+|-.|+|||+..|+.+.-.....+....+-|+|+|+||+|-+..+ ....+++.+
T Consensus 338 ~~~~~~~~~~I~~Q~~~Ai~eADlIlFVVD~~~Glt~~D~~ia~~LRk~~KpvilvvNK~D~~~~e-----~~~~ef~~L 412 (714)
T PRK09518 338 EADAEGIEAAIASQAEIAMTLADAIVFVVDGQVGMTSTDEVIARMLQRAGKPVVLVANKIDDQASE-----YDVAEFWKL 412 (714)
T ss_pred CCCCHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCH-----HHHHHHHHC
T ss_conf 988326999999999999996899999996897989789999999985699889999897887640-----129999965
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHCC
Q ss_conf 232100011100223200678776321000
Q gi|254780321|r 161 STEDALLVSAKTGEGIPLLLERIVQQLPSP 190 (606)
Q Consensus 161 ~~~~ii~vSAktG~GV~~LLd~Iv~~iP~P 190 (606)
--.+.+++||.+|.|+.+|||.|++.+|..
T Consensus 413 G~~e~~~ISA~Hg~G~~dLld~i~~~l~~~ 442 (714)
T PRK09518 413 GLGEPYSISAMHGRGVADLLDVVLDSLKQH 442 (714)
T ss_pred CCCCCEEEECCCCCCHHHHHHHHHHHCCCC
T ss_conf 999968984735789899999999658888
No 101
>pfam10662 PduV-EutP Ethanolamine utilisation - propanediol utilisation. Members of this family function in ethanolamine and propanediol degradation pathways, however the exact roles of these proteins is poorly understood.
Probab=99.70 E-value=1.1e-16 Score=131.43 Aligned_cols=133 Identities=27% Similarity=0.321 Sum_probs=92.0
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHCCEE-EEEEEEEEEECCCCCEEEEEEEECCC----C
Q ss_conf 999801389877889999998298054444311305867798719505-23279999743788438999961787----3
Q gi|254780321|r 14 FSIVAHIDHGKSTLADRFIQHCRGLTEREMSSQVLDNMDIERERGITI-KAQTVRLNYTSTDAKDYQLNLIDTPG----H 88 (606)
Q Consensus 14 ~~IiaHvDhGKTTL~d~lL~~tg~i~~~~~~~~vlD~~~~EreRGITI-ka~~~~~~~~~~~~~~y~iNlIDTPG----H 88 (606)
+||||...+|||||..+|+ |. + |++ |.|++. |..++||||| |
T Consensus 4 VaivGrpNvGKSTLlN~L~---g~--~------------------i~~~K~qtt~----------~~~~~IDTPG~~~~~ 50 (143)
T pfam10662 4 IMLIGRSGCGKTTLTQALN---GE--E------------------LKYKKTQAIE----------FSDNMIDTPGEYLEN 50 (143)
T ss_pred EEEECCCCCCHHHHHHHHC---CC--C------------------EEECCCEEEE----------ECCCEEECCCCCCCC
T ss_conf 9998999999999999975---99--4------------------4517870798----------557489998766562
Q ss_pred CHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCHHHHHHHHH-HHHHHHHHH
Q ss_conf 0027999999973026899998687886558999999997099679983267887532113388877555-322321000
Q gi|254780321|r 89 VDFTYEVSRSLSACEGSLLVVDATQGVEAQTLANVYQAIDNNHEIITVLNKADLPSADPDRVKKQIEETI-GISTEDALL 167 (606)
Q Consensus 89 ~DF~~EV~r~l~a~dgaiLvVdA~~Gvq~QT~~~~~~A~~~~l~~I~viNKiD~~~A~~e~v~~ei~~~~-g~~~~~ii~ 167 (606)
..|...+..+..-||-.++|+||++...... -..+...+.|+|.||||||+... ++..+.+++.+ .+..+++++
T Consensus 51 ~~~~~~~~~~~~daDvil~vvDa~~~~~~~~---~~~~~~~~kpvIlViNKiD~~~~--~~~l~~~~~~~~~~~~~~i~~ 125 (143)
T pfam10662 51 RRFYSALIVTAADADVIALVQDATEPWSVFP---PGFASMFNKPVIGIITKIDLAKD--EANIEMVEEWLNNAGAEKIFE 125 (143)
T ss_pred HHHHHHHHHHHHHCCEEEEEEECCCCCCCCC---HHHHHHCCCCEEEEEECCCCCCC--HHHHHHHHHHHHHCCCCEEEE
T ss_conf 8999999999964999999987788667568---77897547988999980224575--667899999997589987999
Q ss_pred HHHHCCCCCCHHHHHHH
Q ss_conf 11100223200678776
Q gi|254780321|r 168 VSAKTGEGIPLLLERIV 184 (606)
Q Consensus 168 vSAktG~GV~~LLd~Iv 184 (606)
+||.+|.|+++|++.|-
T Consensus 126 iSA~~g~Gid~L~~~l~ 142 (143)
T pfam10662 126 VSAVTNEGIDELFAYLE 142 (143)
T ss_pred EECCCCCCHHHHHHHHH
T ss_conf 88989989999999974
No 102
>cd03691 BipA_TypA_II BipA_TypA_II: domain II of BipA (also called TypA) having homology to domain II of the elongation factors (EFs) EF-G and EF-Tu. BipA is a highly conserved protein with global regulatory properties in Escherichia coli. BipA is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways. BipA functions as a translation factor that is required specifically for the expression of the transcriptional modulator Fis. BipA binds to ribosomes at a site that coincides with that of EF-G and has a GTPase activity that is sensitive to high GDP:GTP ratios and, is stimulated by 70S ribosomes programmed with mRNA and aminoacylated tRNAs. The growth rate-dependent induction of BipA allows the efficient expression of Fis, thereby modulating a range of downstream processes, including DNA metabolism and type III secretion.
Probab=99.67 E-value=5e-17 Score=133.79 Aligned_cols=82 Identities=26% Similarity=0.488 Sum_probs=70.9
Q ss_pred CCCCCCCEEECCCCCEEEEEEECCCCCCCCCEEEEECCCCC---CCCCCCCCCC-CCEEEEHHCCCCCHHHHHHCCCCCC
Q ss_conf 33101210114757259999816987355845887335564---2101222335-5412401012471233220110024
Q gi|254780321|r 200 LKALLIDSWYNSYLGVMVLVRIINGQLTKGQSIRLMGTNAK---YQVERIGILT-PKMIDIEALYPGEIGVMIASIKEVS 275 (606)
Q Consensus 200 l~alVfds~~D~~~G~I~~~RV~sG~lk~Gd~I~~~~~g~~---~~v~~ig~~~-~~~~~v~~l~aGdVG~ii~gik~l~ 275 (606)
|+|+||+..||||.|+++++||+||+|++||+|.+++.+.+ .++.+++.|. .++.+++++.|||| +++.+++
T Consensus 1 f~mlv~~~~~d~~~Gri~~~RV~sG~lk~gd~v~~~~~~~~~~~~rv~~l~~~~g~~~~~v~~a~AGDI----vai~Gl~ 76 (86)
T cd03691 1 LQMLVTTLDYDDYVGRIAIGRIFRGTVKVGQQVAVVKRDGKIEKAKITKLFGFEGLKRVEVEEAEAGDI----VAIAGIE 76 (86)
T ss_pred CCEEEEEEECCCCCCEEEEEEEECCCCCCCCEEEEECCCCCEEECCCEEEEEEECCCCEEEEEECCCCE----EEECCCC
T ss_conf 968999810188775599999846951799989996167826762230768960698569718759999----9994888
Q ss_pred CCCCCCEECC
Q ss_conf 4445420004
Q gi|254780321|r 276 HTRVGDTITD 285 (606)
Q Consensus 276 ~~~vGDTl~~ 285 (606)
++.+|||||+
T Consensus 77 ~~~iGdTl~D 86 (86)
T cd03691 77 DITIGDTICD 86 (86)
T ss_pred CCCCCCCCCC
T ss_conf 8865471369
No 103
>PRK00093 engA GTP-binding protein EngA; Reviewed
Probab=99.67 E-value=2.8e-15 Score=122.02 Aligned_cols=159 Identities=27% Similarity=0.389 Sum_probs=113.9
Q ss_pred HHCEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHCCEEEEEEEEEEEECCCCCEEEEEEEECCCC
Q ss_conf 25317999801389877889999998298054444311305867798719505232799997437884389999617873
Q gi|254780321|r 9 SRIRNFSIVAHIDHGKSTLADRFIQHCRGLTEREMSSQVLDNMDIERERGITIKAQTVRLNYTSTDAKDYQLNLIDTPGH 88 (606)
Q Consensus 9 ~~IRN~~IiaHvDhGKTTL~d~lL~~tg~i~~~~~~~~vlD~~~~EreRGITIka~~~~~~~~~~~~~~y~iNlIDTPGH 88 (606)
++--++||||--..|||||.-+||..--.+.... -|.|.-+-.+.+.| ++..+.||||+|-
T Consensus 170 ~~~iriaiiGrpNvGKStl~N~ll~~~r~ivs~~--------------~GtTrD~i~~~~~~-----~~~~~~~iDTaGi 230 (438)
T PRK00093 170 EDPIKIAIIGRPNVGKSTLINALLGEERVIVSDI--------------AGTTRDSIDTPFER-----DGQKYTLIDTAGI 230 (438)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCC--------------CCCCCCCEEEEEEE-----CCCEEEEEECCCC
T ss_conf 5560599955888655678887654333204799--------------98511232679998-----9967999989898
Q ss_pred CHH--------HHHHHHH---HHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCC---CCCHHHHH
Q ss_conf 002--------7999999---973026899998687886558999999997099679983267887532---11338887
Q gi|254780321|r 89 VDF--------TYEVSRS---LSACEGSLLVVDATQGVEAQTLANVYQAIDNNHEIITVLNKADLPSAD---PDRVKKQI 154 (606)
Q Consensus 89 ~DF--------~~EV~r~---l~a~dgaiLvVdA~~Gvq~QT~~~~~~A~~~~l~~I~viNKiD~~~A~---~e~v~~ei 154 (606)
.-- .+-|.|+ +.-||-++||+||.+|+.-|-...+.++.+.|-+.|+++||+|+..-+ .+...+++
T Consensus 231 rkk~k~~~~iE~~s~~~t~~~i~~~dvvilviDa~~~~~~qD~~i~~~i~~~gk~~ii~vNKwDLv~~~~~~~~~~~~~i 310 (438)
T PRK00093 231 RRRGKVTEGIEKYSVIRTLKAIERADVVLLVIDATEGITEQDLRIAGLALEAGRALVIVVNKWDLVEKDSKTMEEVKEEL 310 (438)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECHHCCCCCHHHHHHHHHHH
T ss_conf 76564213788999999999986446699999766588488899999999819966999970222566389999999999
Q ss_pred HHHH-HHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q ss_conf 7555-3223210001110022320067877632
Q gi|254780321|r 155 EETI-GISTEDALLVSAKTGEGIPLLLERIVQQ 186 (606)
Q Consensus 155 ~~~~-g~~~~~ii~vSAktG~GV~~LLd~Iv~~ 186 (606)
...+ -+....++++||++|.|++.|++.+.+.
T Consensus 311 ~~~l~~~~~~pIvfiSA~~g~gi~kl~~~i~~v 343 (438)
T PRK00093 311 RRRLPFLDFAPIVFISALTGQGVDKLFESILEA 343 (438)
T ss_pred HHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHH
T ss_conf 975612589877998514777999999999999
No 104
>PRK03003 engA GTP-binding protein EngA; Reviewed
Probab=99.67 E-value=2.5e-15 Score=122.42 Aligned_cols=158 Identities=21% Similarity=0.342 Sum_probs=112.2
Q ss_pred HHCEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHCCEEEEEEEEEEEECCCCCEEEEEEEECCCC
Q ss_conf 25317999801389877889999998298054444311305867798719505232799997437884389999617873
Q gi|254780321|r 9 SRIRNFSIVAHIDHGKSTLADRFIQHCRGLTEREMSSQVLDNMDIERERGITIKAQTVRLNYTSTDAKDYQLNLIDTPGH 88 (606)
Q Consensus 9 ~~IRN~~IiaHvDhGKTTL~d~lL~~tg~i~~~~~~~~vlD~~~~EreRGITIka~~~~~~~~~~~~~~y~iNlIDTPGH 88 (606)
+..-++||||....|||||.-+||-.-..+.. -.-|.|.-+-.+.+.| ++..+.||||+|-
T Consensus 209 ~~~~rIAIvGrPNvGKStL~N~llg~~r~ivs--------------~~~GTTRDsI~~~~~~-----~~~~~~liDTAGi 269 (474)
T PRK03003 209 GGPRRVALVGKPNVGKSSLLNKLAGEERSVVH--------------DVAGTTVDPVDSLIEL-----GGKVWRFVDTAGL 269 (474)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCCEEEC--------------CCCCCCCCCEEEEEEE-----CCEEEEEEECCCC
T ss_conf 77627999808998788999998589756745--------------8998515440589999-----9989999989876
Q ss_pred C---------HHHHHHHHH---HHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCC-CCHHHHHH
Q ss_conf 0---------027999999---9730268999986878865589999999970996799832678875321-13388877
Q gi|254780321|r 89 V---------DFTYEVSRS---LSACEGSLLVVDATQGVEAQTLANVYQAIDNNHEIITVLNKADLPSADP-DRVKKQIE 155 (606)
Q Consensus 89 ~---------DF~~EV~r~---l~a~dgaiLvVdA~~Gvq~QT~~~~~~A~~~~l~~I~viNKiD~~~A~~-e~v~~ei~ 155 (606)
- +| +-+.|+ +.-||-+|||+||.+|+..|-...+.++.+.|.++|+++||.|+...+. +....+++
T Consensus 270 Rrk~kv~~~iE~-~s~~rtl~aI~~advvilviDa~egit~QD~~Ia~~v~~~gk~~IivvNKwDLv~~~~~~~~~~~i~ 348 (474)
T PRK03003 270 RRKVGQASGHEF-YASLRTHAAIDAAEVAVVLIDASEPLTEQDQRVLSMVIEAGRALVLAFNKWDLVDEDRRYYLEREID 348 (474)
T ss_pred CCCCCCCCCHHH-HHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHHCCCEEEEEECHHCCCHHHHHHHHHHHH
T ss_conf 635533431458-9999999998733557999854658749999999999980995799997144168678999999998
Q ss_pred HHH-HHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q ss_conf 555-3223210001110022320067877632
Q gi|254780321|r 156 ETI-GISTEDALLVSAKTGEGIPLLLERIVQQ 186 (606)
Q Consensus 156 ~~~-g~~~~~ii~vSAktG~GV~~LLd~Iv~~ 186 (606)
..+ -+....++++||++|.|+..|++.+.+.
T Consensus 349 ~~l~~~~~~piv~ISA~~g~~i~kL~~~i~~v 380 (474)
T PRK03003 349 RELAQVRWAPRVNISAKTGRAVQKLVPALETA 380 (474)
T ss_pred HHHHHCCCCCEEEEEEECCCCHHHHHHHHHHH
T ss_conf 64554489856999810487989999999999
No 105
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.67 E-value=2.6e-15 Score=122.31 Aligned_cols=159 Identities=25% Similarity=0.358 Sum_probs=113.9
Q ss_pred HHCEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHCCEEEEEEEEEEEECCCCCEEEEEEEECCCC
Q ss_conf 25317999801389877889999998298054444311305867798719505232799997437884389999617873
Q gi|254780321|r 9 SRIRNFSIVAHIDHGKSTLADRFIQHCRGLTEREMSSQVLDNMDIERERGITIKAQTVRLNYTSTDAKDYQLNLIDTPGH 88 (606)
Q Consensus 9 ~~IRN~~IiaHvDhGKTTL~d~lL~~tg~i~~~~~~~~vlD~~~~EreRGITIka~~~~~~~~~~~~~~y~iNlIDTPGH 88 (606)
++.-++||+|--..|||||.-+||..--.+.... -|.|--+-...+.| ++..+.||||+|-
T Consensus 170 ~~~iriaivGrPNvGKSTl~N~ll~~~r~ivs~~--------------~GtTrD~i~~~~~~-----~~~~~~~iDTaGi 230 (429)
T TIGR03594 170 DGPIKIAIIGRPNVGKSTLVNALLGEERVIVSDI--------------AGTTRDSIDIPFER-----NGKKYLLIDTAGI 230 (429)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCC--------------CCCCCCCEEEEEEE-----CCEEEEEEECCCC
T ss_conf 5652699974887654677777654333214799--------------98631026879999-----9908999989887
Q ss_pred CH----------H-HHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCC-C-CCCCHHHHHH
Q ss_conf 00----------2-79999999730268999986878865589999999970996799832678875-3-2113388877
Q gi|254780321|r 89 VD----------F-TYEVSRSLSACEGSLLVVDATQGVEAQTLANVYQAIDNNHEIITVLNKADLPS-A-DPDRVKKQIE 155 (606)
Q Consensus 89 ~D----------F-~~EV~r~l~a~dgaiLvVdA~~Gvq~QT~~~~~~A~~~~l~~I~viNKiD~~~-A-~~e~v~~ei~ 155 (606)
.. | .....++++.||-++||+||.+|+..|-..-+.++.+.|.++|+++||+|+-. . ..+....++.
T Consensus 231 rkk~k~~~~~e~~s~~~t~~~i~~~dvvil~iD~~~~~~~qD~~i~~~i~~~~k~~ii~~NK~Dli~~~~~~~~~~~~i~ 310 (429)
T TIGR03594 231 RRKGKVTEGIEKYSVLRTLKAIERADVVLLVLDATEGITEQDLRIAGLALEAGKALIIVVNKWDLVKDEKTREEFKKELR 310 (429)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEEHHHCCCCHHHHHHHHHHHH
T ss_conf 63664230477999999999987447799999766588488899999898739976999972230379999999999999
Q ss_pred HHH-HHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q ss_conf 555-3223210001110022320067877632
Q gi|254780321|r 156 ETI-GISTEDALLVSAKTGEGIPLLLERIVQQ 186 (606)
Q Consensus 156 ~~~-g~~~~~ii~vSAktG~GV~~LLd~Iv~~ 186 (606)
..+ -+....++++||++|.|+..|++.+.+.
T Consensus 311 ~~l~~~~~~pI~fiSA~~g~gi~kl~~~i~~~ 342 (429)
T TIGR03594 311 RKLPFLDFAPIVFISALTGQGVDKLLDAIDEV 342 (429)
T ss_pred HHCCCCCCCCEEEEECCCCCCHHHHHHHHHHH
T ss_conf 85623689868997345778999999999999
No 106
>pfam02421 FeoB_N Ferrous iron transport protein B. Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.67 E-value=1.2e-15 Score=124.42 Aligned_cols=153 Identities=26% Similarity=0.394 Sum_probs=99.6
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHCCEEEEEEEEEEEECCCCCEEEEEEEECCCCCHH-
Q ss_conf 7999801389877889999998298054444311305867798719505232799997437884389999617873002-
Q gi|254780321|r 13 NFSIVAHIDHGKSTLADRFIQHCRGLTEREMSSQVLDNMDIERERGITIKAQTVRLNYTSTDAKDYQLNLIDTPGHVDF- 91 (606)
Q Consensus 13 N~~IiaHvDhGKTTL~d~lL~~tg~i~~~~~~~~vlD~~~~EreRGITIka~~~~~~~~~~~~~~y~iNlIDTPGH~DF- 91 (606)
.++|+|.-..|||||..+|+ |. +. .+.| .-|.|.......+. +.++.+.|+||||..++
T Consensus 1 tVaIvG~PNvGKSTLlN~L~---g~---~~---~Vs~------~pGtTrd~~~~~~~-----~~~~~~~lvDTpGi~~~~ 60 (188)
T pfam02421 1 TIALVGNPNVGKTTLFNALT---GA---RQ---HVGN------WPGVTVEKKEGTFK-----YKGYEIEIVDLPGTYSLS 60 (188)
T ss_pred CEEEECCCCCCHHHHHHHHH---CC---CC---EEEC------CCCCCCCEEEEEEE-----ECCEEEEEEECCCCCCCC
T ss_conf 98998899989999999995---99---96---5638------99972333576875-----251679999688850146
Q ss_pred --HH-H-HHH-HH--HHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCC-HHHHHHHHHHHHHH
Q ss_conf --79-9-999-99--73026899998687886558999999997099679983267887532113-38887755532232
Q gi|254780321|r 92 --TY-E-VSR-SL--SACEGSLLVVDATQGVEAQTLANVYQAIDNNHEIITVLNKADLPSADPDR-VKKQIEETIGISTE 163 (606)
Q Consensus 92 --~~-E-V~r-~l--~a~dgaiLvVdA~~Gvq~QT~~~~~~A~~~~l~~I~viNKiD~~~A~~e~-v~~ei~~~~g~~~~ 163 (606)
+- | +.+ ++ .-+|-+|+|+||.+ ++ ++..-+....+.+.|+|+|+||+|+...+... -.+++.+.+|+
T Consensus 61 ~~~~~e~v~~~~~~~~~aDlvl~vvDa~~-~e-r~l~l~~~l~~~~~p~IvVlNK~Dl~~~~~~~~~~~~l~~~lg~--- 135 (188)
T pfam02421 61 PYSEEEKVARDYLLEEKPDVIINVVDATN-LE-RNLYLTLQLLELGIPVVVALNMMDEAEKKGIKIDIKKLSELLGV--- 135 (188)
T ss_pred CCCHHHHHHHHHHHHCCCCCEEEEEECCC-HH-HHHHHHHHHHHCCCCEEEEECCCHHCCCCCCHHHHHHHHHHCCC---
T ss_conf 53278999999986236873699976762-45-44899999997699889996170201003652039999987399---
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHCC
Q ss_conf 100011100223200678776321000
Q gi|254780321|r 164 DALLVSAKTGEGIPLLLERIVQQLPSP 190 (606)
Q Consensus 164 ~ii~vSAktG~GV~~LLd~Iv~~iP~P 190 (606)
+++++||++|.|+++|+++|++.++.+
T Consensus 136 ~vi~ISA~~g~Gi~eL~~~I~~~~~~~ 162 (188)
T pfam02421 136 PVVPTSARKGEGIDELKDAIIEVAEGK 162 (188)
T ss_pred CEEEEEEECCCCHHHHHHHHHHHHHCC
T ss_conf 689999316999999999999997268
No 107
>pfam00025 Arf ADP-ribosylation factor family. Pfam combines a number of different Prosite families together
Probab=99.67 E-value=1.4e-15 Score=124.17 Aligned_cols=154 Identities=16% Similarity=0.227 Sum_probs=101.7
Q ss_pred CEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHCCEEEEEEEEEEEECCCCCEEEEEEEECCCCCH
Q ss_conf 31799980138987788999999829805444431130586779871950523279999743788438999961787300
Q gi|254780321|r 11 IRNFSIVAHIDHGKSTLADRFIQHCRGLTEREMSSQVLDNMDIERERGITIKAQTVRLNYTSTDAKDYQLNLIDTPGHVD 90 (606)
Q Consensus 11 IRN~~IiaHvDhGKTTL~d~lL~~tg~i~~~~~~~~vlD~~~~EreRGITIka~~~~~~~~~~~~~~y~iNlIDTPGH~D 90 (606)
--.+.++|..++|||||..|+. .+.+.. .. .--|.++ ..+.+ +++.+++.|||||..
T Consensus 14 ~~Ki~llG~~~vGKTsll~~~~--~~~~~~--~~----------pTig~~~----~~v~~-----~~~~~~iwDt~Gqe~ 70 (174)
T pfam00025 14 EMRILILGLDNAGKTTILYKLK--LGEIVT--TI----------PTIGFNV----ETVTY-----KNVKFTVWDVGGQES 70 (174)
T ss_pred EEEEEEECCCCCCHHHHHHHHH--CCCCCC--CC----------CCCCCEE----EEEEE-----CCEEEEEEECCCCCC
T ss_conf 6699999999998899999995--499887--44----------7468238----99998-----999999982798702
Q ss_pred HHHHHHHHHHHCCEEEEEEECCCCCCH-HHHHHHHHHHH----CCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHH--HH
Q ss_conf 279999999730268999986878865-58999999997----099679983267887532113388877555322--32
Q gi|254780321|r 91 FTYEVSRSLSACEGSLLVVDATQGVEA-QTLANVYQAID----NNHEIITVLNKADLPSADPDRVKKQIEETIGIS--TE 163 (606)
Q Consensus 91 F~~EV~r~l~a~dgaiLvVdA~~Gvq~-QT~~~~~~A~~----~~l~~I~viNKiD~~~A~~e~v~~ei~~~~g~~--~~ 163 (606)
|..-.....+-+||+++|+|+++--.- +....++..+. .++|++++.||+|++++..++-..+...+-.+. .-
T Consensus 71 ~~~~~~~y~~~a~~ii~V~D~t~~~s~~~~~~~l~~~l~~~~~~~~piliv~NK~DL~~~~~~~ei~~~~~~~~~~~~~~ 150 (174)
T pfam00025 71 LRPLWRNYFPNTDAVIFVVDSADRDRIEEAKEELHALLNEEELADAPLLILANKQDLPGAMSEAEIRELLGLHELKSRPW 150 (174)
T ss_pred CCHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHCCCCCC
T ss_conf 32679988417826899986786787999999999987542358970899872566767899999999997864417996
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHH
Q ss_conf 100011100223200678776321
Q gi|254780321|r 164 DALLVSAKTGEGIPLLLERIVQQL 187 (606)
Q Consensus 164 ~ii~vSAktG~GV~~LLd~Iv~~i 187 (606)
.++++||++|.||+++++.|.+++
T Consensus 151 ~~~~~SAktG~gI~e~f~~L~~~I 174 (174)
T pfam00025 151 EIQGCSAVTGEGLDEGLDWLSNYI 174 (174)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHC
T ss_conf 899998867959899999999539
No 108
>cd04088 EFG_mtEFG_II EFG_mtEFG_II: this subfamily represents the domain II of elongation factor G (EF-G) in bacteria and, the C-terminus of mitochondrial Elongation factor G1 (mtEFG1) and G2 (mtEFG2)_like proteins found in eukaryotes. During the process of peptide synthesis and tRNA site changes, the ribosome is moved along the mRNA a distance equal to one codon with the addition of each amino acid. In bacteria this translocation step is catalyzed by EF-G_GTP, which is hydrolyzed to provide the required energy. Thus, this action releases the uncharged tRNA from the P site and transfers the newly formed peptidyl-tRNA from the A site to the P site. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more compl
Probab=99.67 E-value=4.2e-17 Score=134.32 Aligned_cols=82 Identities=26% Similarity=0.442 Sum_probs=73.6
Q ss_pred CCCCCCCEEECCCCCEEEEEEECCCCCCCCCEEEEECCCCCCCCCCCCCC-CCCEEEEHHCCCCCHHHHHHCCCCCCCCC
Q ss_conf 33101210114757259999816987355845887335564210122233-55412401012471233220110024444
Q gi|254780321|r 200 LKALLIDSWYNSYLGVMVLVRIINGQLTKGQSIRLMGTNAKYQVERIGIL-TPKMIDIEALYPGEIGVMIASIKEVSHTR 278 (606)
Q Consensus 200 l~alVfds~~D~~~G~I~~~RV~sG~lk~Gd~I~~~~~g~~~~v~~ig~~-~~~~~~v~~l~aGdVG~ii~gik~l~~~~ 278 (606)
|.|+|||+++|||+|+++|+||++|+|++||.|+++++++++++.++..+ +.++.+++++.||||++ +.++++++
T Consensus 1 ~~a~VFK~~~d~~~Gri~~~RV~~G~l~~g~~v~~~~~~~~~kv~~l~~~~g~~~~~v~~~~aGdI~a----i~gl~~~~ 76 (83)
T cd04088 1 FVALVFKTIHDPFVGKLSFVRVYSGTLKAGSTLYNSTKGKKERVGRLLRMHGKKQEEVEEAGAGDIGA----VAGLKDTA 76 (83)
T ss_pred CEEEEEEEEECCCCCEEEEEEEECCEECCCCEEEECCCCEEEEECEEEEEECCCCEECCEECCCCEEE----EECCCCCC
T ss_conf 90999976655988869999995899867975886065104882204788569823946888999999----95888870
Q ss_pred CCCEECC
Q ss_conf 5420004
Q gi|254780321|r 279 VGDTITD 285 (606)
Q Consensus 279 vGDTl~~ 285 (606)
+|||||+
T Consensus 77 ~GDTl~d 83 (83)
T cd04088 77 TGDTLCD 83 (83)
T ss_pred CCCCCCC
T ss_conf 5675369
No 109
>cd04098 eEF2_C_snRNP eEF2_C_snRNP: This family includes a C-terminal portion of the spliceosomal human 116kD U5 small nuclear ribonucleoprotein (snRNP) protein (U5-116 kD) and, its yeast counterpart Snu114p. This domain is homologous to the C-terminal domain of the eukaryotic translational elongation factor EF-2. Yeast Snu114p is essential for cell viability and for splicing in vivo. U5-116 kD binds GTP. Experiments suggest that GTP binding and probably GTP hydrolysis is important for the function of the U5-116 kD/Snu114p. In complex with GTP, EF-2 promotes the translocation step of translation. During translocation the peptidyl-tRNA is moved from the A site to the P site, the uncharged tRNA from the P site to the E-site and, the mRNA is shifted one codon relative to the ribosome.
Probab=99.67 E-value=1.6e-16 Score=130.48 Aligned_cols=76 Identities=21% Similarity=0.277 Sum_probs=71.6
Q ss_pred CCEEEEEEEECCCCCHHHHHHHHHHHHEEECCCCCC--CEEEEEEEECHHHHHHHHHHHHHHHCCCEEEEEEEECCCEE
Q ss_conf 326999998083100038999886300142443368--36999999604333220468767635741888985435464
Q gi|254780321|r 410 EPWIQVTIITPNEYLGSILKLCQERRGIQIDMSHLD--NRAMIVYELPLNEVIFDFYDRLKSVSKGYASFDYNVIDYRD 486 (606)
Q Consensus 410 EPi~~~~I~~P~ey~G~Vm~~l~~RRG~~~~m~~~~--~~~~i~~~vPl~Eli~~f~~~LkS~T~G~as~~ye~~~Y~~ 486 (606)
|||++++|.||++|+|.|++++++|||.+.+++..+ +...+++.+|++|+ +||.++|+|+|+|.|+|.++|+||++
T Consensus 1 EPi~~veI~~p~~~~g~V~~~l~~RRG~ii~~~~~~gt~~~~I~A~vPv~es-FG~~tdLRs~T~G~a~~~~~Fsh~~~ 78 (80)
T cd04098 1 EPIYEVEITCPADAVSAVYEVLSRRRGHVIYDTPIPGTPLYEVKAFIPVIES-FGFETDLRVHTQGQAFCQSVFDHWQI 78 (80)
T ss_pred CCCEEEEEEECHHHHHHHHHHHHCCCCEEECCCCCCCCCEEEEEEECCHHHH-CCCHHHHHHHCCCCCEEEEEECCCEE
T ss_conf 9948999997779853688763048981413420499867999998757897-58479999657797269979632312
No 110
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.67 E-value=1.4e-15 Score=124.03 Aligned_cols=151 Identities=19% Similarity=0.294 Sum_probs=104.7
Q ss_pred HHCEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHCCEEEEEEEEEEEECCCCCEEEEEEEECCCC
Q ss_conf 25317999801389877889999998298054444311305867798719505232799997437884389999617873
Q gi|254780321|r 9 SRIRNFSIVAHIDHGKSTLADRFIQHCRGLTEREMSSQVLDNMDIERERGITIKAQTVRLNYTSTDAKDYQLNLIDTPGH 88 (606)
Q Consensus 9 ~~IRN~~IiaHvDhGKTTL~d~lL~~tg~i~~~~~~~~vlD~~~~EreRGITIka~~~~~~~~~~~~~~y~iNlIDTPGH 88 (606)
++...+.|+|+-++|||||.-++. .+.++.. ..-.|.++ .++. .+++.+++.||||+
T Consensus 12 ~~~~Ki~ilG~~~sGKTsll~~l~--~~~~~~~------------~pT~g~~~----~~v~-----~~~~~~~lwD~~G~ 68 (173)
T cd04155 12 SEEPRILILGLDNAGKTTILKQLA--SEDISHI------------TPTQGFNI----KTVQ-----SDGFKLNVWDIGGQ 68 (173)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHH--CCCCCCC------------CCCCCEEE----EEEE-----ECCEEEEEEECCCC
T ss_conf 877589999799998899999985--6998660------------68113237----9999-----89999999855875
Q ss_pred CHHHHHHHHHHHHCCEEEEEEECCCCCC-HHHHHHHHHHH----HCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHH-
Q ss_conf 0027999999973026899998687886-55899999999----70996799832678875321133888775553223-
Q gi|254780321|r 89 VDFTYEVSRSLSACEGSLLVVDATQGVE-AQTLANVYQAI----DNNHEIITVLNKADLPSADPDRVKKQIEETIGIST- 162 (606)
Q Consensus 89 ~DF~~EV~r~l~a~dgaiLvVdA~~Gvq-~QT~~~~~~A~----~~~l~~I~viNKiD~~~A~~e~v~~ei~~~~g~~~- 162 (606)
.-|..-....++-+||+|+|||+++--+ .++...++..+ ..++|++++.||+|+++|.. .++|.+.+++..
T Consensus 69 ~~~~~~~~~y~~~a~~iI~VvD~td~~~~~~~~~~l~~~l~~~~~~~~PiLiv~NK~Dl~~a~~---~~eI~~~l~l~~~ 145 (173)
T cd04155 69 RAIRPYWRNYFENTDCLIYVIDSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLATAAP---AEEIAEALNLHDL 145 (173)
T ss_pred HHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCC---HHHHHHHHCHHHC
T ss_conf 1012689976555637999996675688999999999997413006983899997666777899---9999998587643
Q ss_pred ----HHHHHHHHHCCCCCCHHHHHHHH
Q ss_conf ----21000111002232006787763
Q gi|254780321|r 163 ----EDALLVSAKTGEGIPLLLERIVQ 185 (606)
Q Consensus 163 ----~~ii~vSAktG~GV~~LLd~Iv~ 185 (606)
..+++|||++|.||++.||-|++
T Consensus 146 ~~~~~~i~~~SA~tG~Gi~E~f~WL~~ 172 (173)
T cd04155 146 RDRTWHIQACSAKTGEGLQEGMNWVCK 172 (173)
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHC
T ss_conf 488758999578579398999999854
No 111
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.66 E-value=1.8e-15 Score=123.30 Aligned_cols=146 Identities=29% Similarity=0.423 Sum_probs=100.0
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHCCEEEEEEEEEEEECCCCCEEEEEEEECCCCCHHH
Q ss_conf 79998013898778899999982980544443113058677987195052327999974378843899996178730027
Q gi|254780321|r 13 NFSIVAHIDHGKSTLADRFIQHCRGLTEREMSSQVLDNMDIERERGITIKAQTVRLNYTSTDAKDYQLNLIDTPGHVDFT 92 (606)
Q Consensus 13 N~~IiaHvDhGKTTL~d~lL~~tg~i~~~~~~~~vlD~~~~EreRGITIka~~~~~~~~~~~~~~y~iNlIDTPGH~DF~ 92 (606)
+++|+|.-.+|||||.-+| +|. +... +.+ .-|.|-......+ ++++|.+.|+||||..+..
T Consensus 3 ~ValvG~pN~GKStL~N~l---~g~--~~~i---vs~------~pgtTrd~~~~~~-----~~~~~~i~l~DTpG~~~~~ 63 (157)
T cd04164 3 KVVIVGKPNVGKSSLLNAL---AGR--DRAI---VSD------IAGTTRDVIEESI-----DIGGIPVRLIDTAGIRETE 63 (157)
T ss_pred EEEEECCCCCCHHHHHHHH---HCC--CCEE---ECC------CCCEEEECCEEEE-----EECCEEEEEEECCCCCCCC
T ss_conf 9999889999899999999---689--7334---328------8984786326789-----5399889997267754445
Q ss_pred HHH-----HHHHH---HCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 999-----99997---3026899998687886558999999997099679983267887532113388877555322321
Q gi|254780321|r 93 YEV-----SRSLS---ACEGSLLVVDATQGVEAQTLANVYQAIDNNHEIITVLNKADLPSADPDRVKKQIEETIGISTED 164 (606)
Q Consensus 93 ~EV-----~r~l~---a~dgaiLvVdA~~Gvq~QT~~~~~~A~~~~l~~I~viNKiD~~~A~~e~v~~ei~~~~g~~~~~ 164 (606)
..+ .+++. -+|.+++|+|+..+...+-...+ ....+.|+++|+||+|+... ++ .... ....+
T Consensus 64 ~~~e~~~~~~~~~~i~~aDlil~vvD~~~~~~~~~~~~~--~~~~~~p~i~v~NKiDl~~~--~~----~~~~--~~~~~ 133 (157)
T cd04164 64 DEIEKIGIERAREAIEEADLVLFVIDASRGLDEEDLEIL--ELPADKPIIVVLNKSDLLPD--SE----LLSL--LAGKP 133 (157)
T ss_pred CHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHH--HHHCCCCEEEEEECCCCCCC--HH----HHHH--CCCCC
T ss_conf 789999999998630157679999889877888899999--85147998999967601486--66----7985--28997
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHH
Q ss_conf 00011100223200678776321
Q gi|254780321|r 165 ALLVSAKTGEGIPLLLERIVQQL 187 (606)
Q Consensus 165 ii~vSAktG~GV~~LLd~Iv~~i 187 (606)
++++||++|.|+++|++.|.+..
T Consensus 134 vi~ISA~~g~Gi~~L~~~I~e~a 156 (157)
T cd04164 134 IIAISAKTGEGLDELKEALLELA 156 (157)
T ss_pred EEEEECCCCCCHHHHHHHHHHHC
T ss_conf 79998527959999999999972
No 112
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.66 E-value=3.2e-15 Score=121.67 Aligned_cols=155 Identities=26% Similarity=0.304 Sum_probs=114.2
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHCCEEEEEEEEEEEECCCCCEEEEEEEECCCCCHH
Q ss_conf 17999801389877889999998298054444311305867798719505232799997437884389999617873002
Q gi|254780321|r 12 RNFSIVAHIDHGKSTLADRFIQHCRGLTEREMSSQVLDNMDIERERGITIKAQTVRLNYTSTDAKDYQLNLIDTPGHVDF 91 (606)
Q Consensus 12 RN~~IiaHvDhGKTTL~d~lL~~tg~i~~~~~~~~vlD~~~~EreRGITIka~~~~~~~~~~~~~~y~iNlIDTPGH~DF 91 (606)
.-+||+|--.-|||||--||. |. |.+ =|-|.- |.|= .-.|...+|..+.+.+|||+|-.+.
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~---g~---r~A--IV~D~p------GvTR-----Dr~y~~~~~~~~~f~lIDTgGl~~~ 64 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLT---GR---RIA--IVSDTP------GVTR-----DRIYGDAEWLGREFILIDTGGLDDG 64 (444)
T ss_pred CEEEEECCCCCCHHHHHHHHH---CC---EEE--EEECCC------CCCC-----CCCCCEEEECCCEEEEEECCCCCCC
T ss_conf 789998999875899998875---77---026--760699------9755-----7754506983860799978997768
Q ss_pred H-----H----HHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 7-----9----999999730268999986878865589999999970996799832678875321133888775553223
Q gi|254780321|r 92 T-----Y----EVSRSLSACEGSLLVVDATQGVEAQTLANVYQAIDNNHEIITVLNKADLPSADPDRVKKQIEETIGIST 162 (606)
Q Consensus 92 ~-----~----EV~r~l~a~dgaiLvVdA~~Gvq~QT~~~~~~A~~~~l~~I~viNKiD~~~A~~e~v~~ei~~~~g~~~ 162 (606)
. . .+..++.-+|.+|+|||+.+|+.++-......-+..+.|+|+|+||+|-.. -...+.++..+--
T Consensus 65 ~~~~l~~~i~~Qa~~Ai~eADvilfvVD~~~Git~~D~~ia~~Lr~~~kpviLvvNK~D~~~-----~e~~~~efyslG~ 139 (444)
T COG1160 65 DEDELQELIREQALIAIEEADVILFVVDGREGITPADEEIAKILRRSKKPVILVVNKIDNLK-----AEELAYEFYSLGF 139 (444)
T ss_pred CCHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCH-----HHHHHHHHHHCCC
T ss_conf 81289999999999999767999999848878997899999999853998899997666730-----4564899986478
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHCCC
Q ss_conf 21000111002232006787763210001
Q gi|254780321|r 163 EDALLVSAKTGEGIPLLLERIVQQLPSPT 191 (606)
Q Consensus 163 ~~ii~vSAktG~GV~~LLd~Iv~~iP~P~ 191 (606)
.+.+++||..|.|+.+|+|+|++.+| |.
T Consensus 140 g~~~~ISA~Hg~Gi~dLld~v~~~l~-~~ 167 (444)
T COG1160 140 GEPVPISAEHGRGIGDLLDAVLELLP-PD 167 (444)
T ss_pred CCCEEEEHHHCCCHHHHHHHHHHHCC-CC
T ss_conf 98268425535698999999997567-74
No 113
>PRK09518 bifunctional cytidylate kinase/GTP-binding protein; Reviewed
Probab=99.65 E-value=4.1e-15 Score=120.95 Aligned_cols=160 Identities=24% Similarity=0.329 Sum_probs=112.8
Q ss_pred HHHCEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHCCEEEEEEEEEEEECCCCCEEEEEEEECCC
Q ss_conf 52531799980138987788999999829805444431130586779871950523279999743788438999961787
Q gi|254780321|r 8 LSRIRNFSIVAHIDHGKSTLADRFIQHCRGLTEREMSSQVLDNMDIERERGITIKAQTVRLNYTSTDAKDYQLNLIDTPG 87 (606)
Q Consensus 8 ~~~IRN~~IiaHvDhGKTTL~d~lL~~tg~i~~~~~~~~vlD~~~~EreRGITIka~~~~~~~~~~~~~~y~iNlIDTPG 87 (606)
.+..+++||||--..|||||.-+||-.--.+... .-|.|.-|-.+.+.| ++..+.||||.|
T Consensus 449 ~~~~~rIAIIGRPNVGKSTLiN~LlgeeR~IVs~--------------iaGTTRDsId~~~~~-----~g~~~~lIDTAG 509 (714)
T PRK09518 449 LSGLRRVALVGRPNVGKSSLLNQLTREERAVVND--------------LAGTTRDPVDEIVNI-----DGKDWLFVDTAG 509 (714)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHCCCEEEECC--------------CCCCEECEEEEEEEE-----CCEEEEEEECHH
T ss_conf 4677358886699887899999996897588568--------------898502305567999-----997899998600
Q ss_pred C-----CHH---HHHHHHHH---HHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCC-CCCHHHHHH
Q ss_conf 3-----002---79999999---73026899998687886558999999997099679983267887532-113388877
Q gi|254780321|r 88 H-----VDF---TYEVSRSL---SACEGSLLVVDATQGVEAQTLANVYQAIDNNHEIITVLNKADLPSAD-PDRVKKQIE 155 (606)
Q Consensus 88 H-----~DF---~~EV~r~l---~a~dgaiLvVdA~~Gvq~QT~~~~~~A~~~~l~~I~viNKiD~~~A~-~e~v~~ei~ 155 (606)
- .+- -+-+.|++ .-||-||||+||++|+..|-.....++.+.|-++|+++||.|+...+ .++...++.
T Consensus 510 iRkk~k~~~~iE~~S~~rt~~aI~~adVvllviDA~~git~QD~~Ia~~i~~~gk~~IivvNKWDLv~~~~~~~~~~~i~ 589 (714)
T PRK09518 510 IRRKQKKLTGAEYYASLRTQAAIERCELALILFDASQPISEQDLRVMSMAVDAGRALVLAFNKWDLMDEFRRQRLEREID 589 (714)
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHHCCCEEEEEECHHCCCHHHHHHHHHHHH
T ss_conf 15244325432279999999988658899999867767528999999999985993799996143068668999999999
Q ss_pred HHH-HHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q ss_conf 555-3223210001110022320067877632
Q gi|254780321|r 156 ETI-GISTEDALLVSAKTGEGIPLLLERIVQQ 186 (606)
Q Consensus 156 ~~~-g~~~~~ii~vSAktG~GV~~LLd~Iv~~ 186 (606)
..+ -+.-..++++||++|.|++.|++++.+-
T Consensus 590 ~~l~~~~~apiv~iSA~~g~~v~kl~~~i~~~ 621 (714)
T PRK09518 590 TEFDRVMWAERVNISAKTGRHTNRLARAMDKA 621 (714)
T ss_pred HHCCCCCCCCEEEEECCCCCCHHHHHHHHHHH
T ss_conf 75636899988999667897889999999999
No 114
>KOG0052 consensus
Probab=99.65 E-value=3.6e-17 Score=134.78 Aligned_cols=125 Identities=34% Similarity=0.527 Sum_probs=101.3
Q ss_pred CEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCC----------------CEEECCCHHHHHHCCEEEEEEEEEEEECCC
Q ss_conf 3179998013898778899999982980544443----------------113058677987195052327999974378
Q gi|254780321|r 11 IRNFSIVAHIDHGKSTLADRFIQHCRGLTEREMS----------------SQVLDNMDIERERGITIKAQTVRLNYTSTD 74 (606)
Q Consensus 11 IRN~~IiaHvDhGKTTL~d~lL~~tg~i~~~~~~----------------~~vlD~~~~EreRGITIka~~~~~~~~~~~ 74 (606)
-+|+++|+|+|.||||+.. +.+|.++.|.+. +.++|++..||||||||.. ..| ...
T Consensus 7 ~~ni~~i~h~~s~~stt~~---~~~g~id~~~~~k~~keaa~~~kgsf~~a~~~dk~~ae~~r~i~I~~----~l~-~~~ 78 (391)
T KOG0052 7 HINIVVIGHVDSGKSTTTG---YKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDI----ALW-KFE 78 (391)
T ss_pred CCCEEEEEEEEEEEEEEEE---EECCCCCCHHHHHHCHHHHHHCCCEEEEEEEECHHHHCCCCCEEEEE----EEE-CCC
T ss_conf 3025898763221268986---30366453013330667776356416655431111211146548999----850-433
Q ss_pred CCEEEEEEEECCCCCHHHHHHHHHHHHCCEEEEEEEC-CCCCC------HHHHHHHHHHHHCCCC-EEEEECCCCCC
Q ss_conf 8438999961787300279999999730268999986-87886------5589999999970996-79983267887
Q gi|254780321|r 75 AKDYQLNLIDTPGHVDFTYEVSRSLSACEGSLLVVDA-TQGVE------AQTLANVYQAIDNNHE-IITVLNKADLP 143 (606)
Q Consensus 75 ~~~y~iNlIDTPGH~DF~~EV~r~l~a~dgaiLvVdA-~~Gvq------~QT~~~~~~A~~~~l~-~I~viNKiD~~ 143 (606)
...|.+++||.|||-||+..+....+++|.|+|.|.| +.+.+ .||++|+.+|...|.+ +|+-+||||..
T Consensus 79 t~k~~i~iid~pgh~d~~k~mitg~sqaD~avliva~~~gefEagiskngqt~ehalla~tlgv~qliv~v~k~D~~ 155 (391)
T KOG0052 79 TSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDST 155 (391)
T ss_pred CEEEEEEEECCCCCCCEEEEEEEEEEEECCEEEEEEEECCCEEEECCCCCHHHHHHHHHCCCCCEEEEEEEECCCCC
T ss_conf 10677998537788742146876687623058999750353355203351144565553103531456776034336
No 115
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.64 E-value=2.7e-15 Score=122.20 Aligned_cols=154 Identities=19% Similarity=0.273 Sum_probs=105.3
Q ss_pred CCCCCHHHCEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHCCEEEEEEEEEEEECCCCCEEEEEE
Q ss_conf 88998525317999801389877889999998298054444311305867798719505232799997437884389999
Q gi|254780321|r 3 KKPTPLSRIRNFSIVAHIDHGKSTLADRFIQHCRGLTEREMSSQVLDNMDIERERGITIKAQTVRLNYTSTDAKDYQLNL 82 (606)
Q Consensus 3 ~~~~p~~~IRN~~IiaHvDhGKTTL~d~lL~~tg~i~~~~~~~~vlD~~~~EreRGITIka~~~~~~~~~~~~~~y~iNl 82 (606)
++..|.++.=-|||+|.-..|||||.-+|+ |. ++-+ .+ ....|.|- .+.+...+ ..+.|
T Consensus 10 ~~~~p~~~~p~IaivGrpNvGKSTL~N~L~---g~--k~~a--~v------s~~pGtTr-----~i~~~~~~---~~~~l 68 (179)
T TIGR03598 10 LKQLPPDDGPEIAFAGRSNVGKSSLINALT---NR--KKLA--RT------SKTPGRTQ-----LINFFEVN---DGFRL 68 (179)
T ss_pred HHHCCCCCCCEEEEECCCCCCHHHHHHHHH---CC--CCEE--EE------CCCCCEEE-----ECCEEEEC---CCEEE
T ss_conf 767999889789998699988899999986---89--8558--97------08997366-----02320104---73699
Q ss_pred EECCCC----------CHHHHHHHHHHH---HCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCC-CCCC
Q ss_conf 617873----------002799999997---30268999986878865589999999970996799832678875-3211
Q gi|254780321|r 83 IDTPGH----------VDFTYEVSRSLS---ACEGSLLVVDATQGVEAQTLANVYQAIDNNHEIITVLNKADLPS-ADPD 148 (606)
Q Consensus 83 IDTPGH----------~DF~~EV~r~l~---a~dgaiLvVdA~~Gvq~QT~~~~~~A~~~~l~~I~viNKiD~~~-A~~e 148 (606)
|||||+ ..|...++..+. .++.+++|+||.+|+..|-...+.++.+.+.++++++||+|+-+ .+..
T Consensus 69 vDtpGyG~~~~~~~~~~~~~~~~~~~~~~~~~l~~villiDa~~gl~~~D~~i~~~l~~~~kp~iivlNK~Dll~~~~~~ 148 (179)
T TIGR03598 69 VDLPGYGYAKVSKEEKEKWQKLIEEYLRGRENLKGVVLLMDIRHPLKELDLEMLEWLDERGIPVLIVLTKADKLKKSERN 148 (179)
T ss_pred EECCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHH
T ss_conf 97776021127888899999999999999886430289874377998999999999997599889999781306989999
Q ss_pred CHHHHHHHHHHH--HHHHHHHHHHHCCCCCC
Q ss_conf 338887755532--23210001110022320
Q gi|254780321|r 149 RVKKQIEETIGI--STEDALLVSAKTGEGIP 177 (606)
Q Consensus 149 ~v~~ei~~~~g~--~~~~ii~vSAktG~GV~ 177 (606)
+..+++.+.+.. +...++++||++|.|++
T Consensus 149 ~~~~~i~~~l~~~~~~~~v~~ISA~~g~GID 179 (179)
T TIGR03598 149 KQLKKIKKALKKDADDPSVQLFSSLKKTGIE 179 (179)
T ss_pred HHHHHHHHHHHCCCCCCCEEEEECCCCCCCC
T ss_conf 9999999997336688948999799983879
No 116
>cd04091 mtEFG1_II_like mtEFG1_C: C-terminus of mitochondrial Elongation factor G1 (mtEFG1)-like proteins found in eukaryotes. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more complex than that in prokaryotes, with both cytoplasmic and mitochondrial elongation factors and multiple isoforms being expressed in certain species. Eukaryotic EF-2 operates in the cytosolic protein synthesis machinery of eukaryotes, EF-Gs in protein synthesis in bacteria. Eukaryotic mtEFG1 proteins show significant homology to bacterial EF-Gs. Mutants in yeast mtEFG1 have impaired mitochondrial protein synthesis, respiratory defects and a tendency to lose mitochondrial DNA. There are two forms of mtEFG present in mammals
Probab=99.62 E-value=1.9e-16 Score=129.88 Aligned_cols=80 Identities=28% Similarity=0.425 Sum_probs=71.4
Q ss_pred CCCCCCCEEECCCCCEEEEEEECCCCCCCCCEEEEECCCCCCCCCCCCCCCCC-EEEEHHCCCCCHHHHHHCCCCCCCCC
Q ss_conf 33101210114757259999816987355845887335564210122233554-12401012471233220110024444
Q gi|254780321|r 200 LKALLIDSWYNSYLGVMVLVRIINGQLTKGQSIRLMGTNAKYQVERIGILTPK-MIDIEALYPGEIGVMIASIKEVSHTR 278 (606)
Q Consensus 200 l~alVfds~~D~~~G~I~~~RV~sG~lk~Gd~I~~~~~g~~~~v~~ig~~~~~-~~~v~~l~aGdVG~ii~gik~l~~~~ 278 (606)
|.|+||++..||| |+++|+|||||+|++|+.+++.++++++++.++..++++ +.+++++.||||+.+. ++ ++.
T Consensus 1 f~a~vFK~~~d~~-G~lsf~RVysG~l~~g~~v~n~~~~~~eri~~l~~~~~~~~~~v~~a~aGDIvav~----gl-~~~ 74 (81)
T cd04091 1 FVGLAFKLEEGRF-GQLTYMRIYQGKLKKGDTIYNVRTGKKVRVPRLVRMHSNEMEEVEEAGAGDICAIF----GI-DCA 74 (81)
T ss_pred CCEEEEEEECCCC-CCEEEEEEEEEEECCCCEEEECCCCCEEEEEEEEEEECCCCEECCEECCCCEEEEE----CC-CCC
T ss_conf 9499998761899-88999999672887999999786891687202289978985076568799899998----99-967
Q ss_pred CCCEECC
Q ss_conf 5420004
Q gi|254780321|r 279 VGDTITD 285 (606)
Q Consensus 279 vGDTl~~ 285 (606)
+|||||+
T Consensus 75 tGDTL~d 81 (81)
T cd04091 75 SGDTFTD 81 (81)
T ss_pred CCCCCCC
T ss_conf 4776359
No 117
>PRK04213 GTP-binding protein; Provisional
Probab=99.62 E-value=1.4e-14 Score=117.27 Aligned_cols=153 Identities=26% Similarity=0.285 Sum_probs=104.4
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHCCEEEEEEEEEEEECCCCCEEEEEEEECCCCC---
Q ss_conf 79998013898778899999982980544443113058677987195052327999974378843899996178730---
Q gi|254780321|r 13 NFSIVAHIDHGKSTLADRFIQHCRGLTEREMSSQVLDNMDIERERGITIKAQTVRLNYTSTDAKDYQLNLIDTPGHV--- 89 (606)
Q Consensus 13 N~~IiaHvDhGKTTL~d~lL~~tg~i~~~~~~~~vlD~~~~EreRGITIka~~~~~~~~~~~~~~y~iNlIDTPGH~--- 89 (606)
-+||+|.-..|||||.-+|+ |. +-. +.+ .-|.|-. ..+ .+|+++ -|+||||+-
T Consensus 3 ~VaivGRpNVGKSTL~N~L~---g~---k~~---vs~------~pg~Tr~-----~~~--~~~~~~--~~vDtPG~g~~~ 58 (195)
T PRK04213 3 EIIFVGRSNVGKSTLIRALT---GK---KVR---VGK------RPGVTLK-----PNE--YDWGDF--ILVDLPGFGFMS 58 (195)
T ss_pred EEEEECCCCCCHHHHHHHHH---CC---CCC---CCC------CCCEEEE-----EEE--EECCCE--EEEECCCCCCCC
T ss_conf 79997699988999999996---89---851---348------9964873-----458--850889--999999962224
Q ss_pred ----HH----HHHH----HHHHHHCCEEEEEEECCCCCC-----------HHHHHHHHHHHHCCCCEEEEECCCCCCCCC
Q ss_conf ----02----7999----999973026899998687886-----------558999999997099679983267887532
Q gi|254780321|r 90 ----DF----TYEV----SRSLSACEGSLLVVDATQGVE-----------AQTLANVYQAIDNNHEIITVLNKADLPSAD 146 (606)
Q Consensus 90 ----DF----~~EV----~r~l~a~dgaiLvVdA~~Gvq-----------~QT~~~~~~A~~~~l~~I~viNKiD~~~A~ 146 (606)
.. .... +++...++.+++||||..++. ++-...+.+..+.+.|+|+|+||+|+-. +
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvD~~~~~~~~dr~~~~~~~~~D~~i~~~l~~~~~p~ilv~NKiD~i~-~ 137 (195)
T PRK04213 59 GVPKKVQERIKDEIVHYIEDNADRIAAAVLVVDGKSFPEIIERWESRGEIPIDVEMFDFLRELGINPIVAVNKMDKIK-N 137 (195)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEEECHHHCC-C
T ss_conf 588889999999999999998851789999995786544211234456777789999999874998799998733058-7
Q ss_pred CCCHHHHHHHHHHHHH------HHHHHHHHHCCCCCCHHHHHHHHHHHCCC
Q ss_conf 1133888775553223------21000111002232006787763210001
Q gi|254780321|r 147 PDRVKKQIEETIGIST------EDALLVSAKTGEGIPLLLERIVQQLPSPT 191 (606)
Q Consensus 147 ~e~v~~ei~~~~g~~~------~~ii~vSAktG~GV~~LLd~Iv~~iP~P~ 191 (606)
-+....++.+.+++.+ +.++++||++| |+++|++.|.+++|.-+
T Consensus 138 ~~~~l~~i~e~~~~~~~~~~~~~~iv~iSakk~-Gid~L~~~I~~~L~E~~ 187 (195)
T PRK04213 138 SEEVLDEIAERLGLYPPWRQWLDIIAPISAKKG-GIEALKGLINKRLREFK 187 (195)
T ss_pred HHHHHHHHHHHHHCCCCHHHCCCEEEEEECCCC-CHHHHHHHHHHHCHHHC
T ss_conf 788899999998257615656987999845779-99999999999675537
No 118
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.62 E-value=9.7e-15 Score=118.42 Aligned_cols=146 Identities=20% Similarity=0.254 Sum_probs=97.7
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHCCEEEEEEEEEEEECCCCCEEEEEEEECCCCCHHHH
Q ss_conf 99980138987788999999829805444431130586779871950523279999743788438999961787300279
Q gi|254780321|r 14 FSIVAHIDHGKSTLADRFIQHCRGLTEREMSSQVLDNMDIERERGITIKAQTVRLNYTSTDAKDYQLNLIDTPGHVDFTY 93 (606)
Q Consensus 14 ~~IiaHvDhGKTTL~d~lL~~tg~i~~~~~~~~vlD~~~~EreRGITIka~~~~~~~~~~~~~~y~iNlIDTPGH~DF~~ 93 (606)
+.++|..+.|||||..|+. .+.+... + -|+. +.+...+++++.+++.||||+.-|..
T Consensus 2 i~ilG~~~vGKTsll~~l~--~~~~~~~------------~----pTig-----~~~~~i~~~~~~l~iwDt~G~~~~~~ 58 (158)
T cd00878 2 ILILGLDGAGKTTILYKLK--LGEVVTT------------I----PTIG-----FNVETVEYKNVSFTVWDVGGQDKIRP 58 (158)
T ss_pred EEEECCCCCCHHHHHHHHH--CCCCCCC------------C----CEEC-----CCEEEEEECCEEEEEEECCCCCCCCH
T ss_conf 9999999998899999995--3998874------------4----5607-----40899984889999998899722144
Q ss_pred HHHHHHHHCCEEEEEEECCCCCCHHHHHHH-HHHHH----CCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHH-----H
Q ss_conf 999999730268999986878865589999-99997----0996799832678875321133888775553223-----2
Q gi|254780321|r 94 EVSRSLSACEGSLLVVDATQGVEAQTLANV-YQAID----NNHEIITVLNKADLPSADPDRVKKQIEETIGIST-----E 163 (606)
Q Consensus 94 EV~r~l~a~dgaiLvVdA~~Gvq~QT~~~~-~~A~~----~~l~~I~viNKiD~~~A~~e~v~~ei~~~~g~~~-----~ 163 (606)
-.....+-+||+|+|+|+++--.-+....| ...+. .+.|++++.||+|++++.. ..++.+.++++. -
T Consensus 59 ~~~~y~~~a~~~i~V~D~t~~~s~~~~~~~~~~~~~~~~~~~~piliv~NK~Dl~~~~~---~~ei~~~l~~~~~~~~~~ 135 (158)
T cd00878 59 LWKHYYENTNGIIFVVDSSDRERIEEAKEELHKLLNEEELKGVPLLIFANKQDLPGALS---VSELIEKLGLEKILGRRW 135 (158)
T ss_pred HHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCC---HHHHHHHHHHHHHCCCCC
T ss_conf 89987276877689983798889999999999998660557653898760547665789---999999985875107998
Q ss_pred HHHHHHHHCCCCCCHHHHHHHH
Q ss_conf 1000111002232006787763
Q gi|254780321|r 164 DALLVSAKTGEGIPLLLERIVQ 185 (606)
Q Consensus 164 ~ii~vSAktG~GV~~LLd~Iv~ 185 (606)
.++.+||++|.||++.++.|.+
T Consensus 136 ~~~~~SAktg~gI~e~f~~L~e 157 (158)
T cd00878 136 HIQPCSAVTGDGLDEGLDWLLQ 157 (158)
T ss_pred EEEEEECCCCCCHHHHHHHHHC
T ss_conf 9999988879298999999956
No 119
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.61 E-value=9.8e-15 Score=118.39 Aligned_cols=152 Identities=20% Similarity=0.267 Sum_probs=99.6
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHH--CCEEEEEEEEEEEECCCCCEEEEEEEECCCCCHH
Q ss_conf 99980138987788999999829805444431130586779871--9505232799997437884389999617873002
Q gi|254780321|r 14 FSIVAHIDHGKSTLADRFIQHCRGLTEREMSSQVLDNMDIERER--GITIKAQTVRLNYTSTDAKDYQLNLIDTPGHVDF 91 (606)
Q Consensus 14 ~~IiaHvDhGKTTL~d~lL~~tg~i~~~~~~~~vlD~~~~EreR--GITIka~~~~~~~~~~~~~~y~iNlIDTPGH~DF 91 (606)
+.++|.-++|||||..||- +. ...... +... ..|| .+.+...+++++.+++.||||+..|
T Consensus 2 ivilG~~~~GKTsll~~l~--~~-~~~~~~----------~~~~~~~~Tv-----g~~~~~i~~~~~~l~iwD~~Gqe~~ 63 (167)
T cd04160 2 VLILGLDNAGKTTFLEQLK--TL-FSKYKG----------LPPSKITPTV-----GLNIGTIEVGNARLKFWDLGGQESL 63 (167)
T ss_pred EEEECCCCCCHHHHHHHHH--HC-CCCCCC----------CCCCCCCCCC-----CEEEEEEEECCEEEEEEECCCCHHH
T ss_conf 9999999988889999887--50-367677----------7655403531-----3268999989999999968987888
Q ss_pred HHHHHHHHHHCCEEEEEEECCCCCC-HHHHHHHHHHHH----CCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHH-----
Q ss_conf 7999999973026899998687886-558999999997----099679983267887532113388877555322-----
Q gi|254780321|r 92 TYEVSRSLSACEGSLLVVDATQGVE-AQTLANVYQAID----NNHEIITVLNKADLPSADPDRVKKQIEETIGIS----- 161 (606)
Q Consensus 92 ~~EV~r~l~a~dgaiLvVdA~~Gvq-~QT~~~~~~A~~----~~l~~I~viNKiD~~~A~~e~v~~ei~~~~g~~----- 161 (606)
..-...-.+-|+|+|+|||+++--. .+....+...+. .++|++++.||+|+|++.. .+++.+.++..
T Consensus 64 ~~l~~~y~~~a~~ii~VvD~sd~~~~~~~~~~l~~~~~~~~~~~~pili~~NK~Dl~~~~~---~~ei~~~~~~~~~~~~ 140 (167)
T cd04160 64 RSLWDKYYAECHAIIYVIDSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDLPDALS---VEEIKEVFQDKAEEIG 140 (167)
T ss_pred HHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCC---HHHHHHHHHHHHHHHC
T ss_conf 7899874289878999986686788999999999975110248962999970667665778---9999999999999854
Q ss_pred --HHHHHHHHHHCCCCCCHHHHHHHHH
Q ss_conf --3210001110022320067877632
Q gi|254780321|r 162 --TEDALLVSAKTGEGIPLLLERIVQQ 186 (606)
Q Consensus 162 --~~~ii~vSAktG~GV~~LLd~Iv~~ 186 (606)
.-.+++|||++|.||++.|+-+++.
T Consensus 141 ~~~~~~~~~SAktG~Gv~e~f~wL~~k 167 (167)
T cd04160 141 RRDCLVLPVSALEGTGVREGIEWLVER 167 (167)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHCC
T ss_conf 699899998878294989999999659
No 120
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.61 E-value=1.2e-14 Score=117.82 Aligned_cols=149 Identities=21% Similarity=0.312 Sum_probs=101.7
Q ss_pred CEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHCCEEEEEEEEEEEECCCCCEEEEEEEECCCCCH
Q ss_conf 31799980138987788999999829805444431130586779871950523279999743788438999961787300
Q gi|254780321|r 11 IRNFSIVAHIDHGKSTLADRFIQHCRGLTEREMSSQVLDNMDIERERGITIKAQTVRLNYTSTDAKDYQLNLIDTPGHVD 90 (606)
Q Consensus 11 IRN~~IiaHvDhGKTTL~d~lL~~tg~i~~~~~~~~vlD~~~~EreRGITIka~~~~~~~~~~~~~~y~iNlIDTPGH~D 90 (606)
=-++.++|.-++|||||..+++ .+.+.. . ..|+-....++.+ +++.+++-||+|+..
T Consensus 14 ~~KililG~~~sGKTsll~~l~--~~~~~~--~--------------~pT~G~~~~~~~~-----~~~~l~iwD~~G~e~ 70 (173)
T cd04154 14 EMRILILGLDNAGKTTILKKLL--GEDIDT--I--------------SPTLGFQIKTLEY-----EGYKLNIWDVGGQKT 70 (173)
T ss_pred CEEEEEECCCCCCHHHHHHHHC--CCCCCC--C--------------CCCCCEEEEEEEE-----CCEEEEEEECCCCCC
T ss_conf 3189999899978899999983--999897--2--------------6705777899998-----999999996688602
Q ss_pred HHHHHHHHHHHCCEEEEEEECCCCCCHH-HHHHHHHHH----HCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHH---
Q ss_conf 2799999997302689999868788655-899999999----70996799832678875321133888775553223---
Q gi|254780321|r 91 FTYEVSRSLSACEGSLLVVDATQGVEAQ-TLANVYQAI----DNNHEIITVLNKADLPSADPDRVKKQIEETIGIST--- 162 (606)
Q Consensus 91 F~~EV~r~l~a~dgaiLvVdA~~Gvq~Q-T~~~~~~A~----~~~l~~I~viNKiD~~~A~~e~v~~ei~~~~g~~~--- 162 (606)
|..-...-.+-|||+|+|||+++--.-+ .+..++..+ ..+.|++++.||+|++++.. .+||.+.++++.
T Consensus 71 ~~~~~~~y~~~a~~ii~VvD~td~~~~~~~~~~l~~ll~~~~~~~~pili~~NK~Dl~~~~~---~~ei~~~l~l~~~~~ 147 (173)
T cd04154 71 LRPYWRNYFESTDALIWVVDSSDRLRLDDCKRELKELLQEERLAGATLLILANKQDLPGALS---EEEIREALELDKISS 147 (173)
T ss_pred CCHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCC---HHHHHHHHHHHHCCC
T ss_conf 00589997226653899985565788999999999998635415984799987656777889---999999986874457
Q ss_pred --HHHHHHHHHCCCCCCHHHHHHHH
Q ss_conf --21000111002232006787763
Q gi|254780321|r 163 --EDALLVSAKTGEGIPLLLERIVQ 185 (606)
Q Consensus 163 --~~ii~vSAktG~GV~~LLd~Iv~ 185 (606)
-.+++|||++|.||+++++-+++
T Consensus 148 ~~~~~~~~SAktG~gI~e~f~wL~~ 172 (173)
T cd04154 148 HHWRIQPCSAVTGEGLLQGIDWLVD 172 (173)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHC
T ss_conf 9829999889669298999999864
No 121
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.59 E-value=1.7e-14 Score=116.76 Aligned_cols=206 Identities=23% Similarity=0.288 Sum_probs=133.9
Q ss_pred HCEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHCCEEEEEEEEEEEECCCCCEEEEEEEECCCC-
Q ss_conf 5317999801389877889999998298054444311305867798719505232799997437884389999617873-
Q gi|254780321|r 10 RIRNFSIVAHIDHGKSTLADRFIQHCRGLTEREMSSQVLDNMDIERERGITIKAQTVRLNYTSTDAKDYQLNLIDTPGH- 88 (606)
Q Consensus 10 ~IRN~~IiaHvDhGKTTL~d~lL~~tg~i~~~~~~~~vlD~~~~EreRGITIka~~~~~~~~~~~~~~y~iNlIDTPGH- 88 (606)
+-.-|||||....|||||.-+||-.--++... +-|.|+-+ +...|. .+++. +-||||-|-
T Consensus 177 ~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~--------------~aGTTRD~--I~~~~e-~~~~~--~~liDTAGiR 237 (444)
T COG1160 177 DPIKIAIIGRPNVGKSSLINAILGEERVIVSD--------------IAGTTRDS--IDIEFE-RDGRK--YVLIDTAGIR 237 (444)
T ss_pred CCEEEEEEECCCCCCHHHHHHHCCCCEEEECC--------------CCCCCCCC--EEEEEE-ECCEE--EEEEECCCCC
T ss_conf 75089999278787058887750682598459--------------99862203--312589-98818--9999877877
Q ss_pred ---------CHHHHHHHHHHH---HCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCC---CCCCCHHHH
Q ss_conf ---------002799999997---30268999986878865589999999970996799832678875---321133888
Q gi|254780321|r 89 ---------VDFTYEVSRSLS---ACEGSLLVVDATQGVEAQTLANVYQAIDNNHEIITVLNKADLPS---ADPDRVKKQ 153 (606)
Q Consensus 89 ---------~DF~~EV~r~l~---a~dgaiLvVdA~~Gvq~QT~~~~~~A~~~~l~~I~viNKiD~~~---A~~e~v~~e 153 (606)
.-|+ |.|++. .+|-++||+||.+|+..|-.....++.+.|..+|+|+||-|+-. +..+....+
T Consensus 238 rk~ki~e~~E~~S--v~rt~~aI~~a~vvllviDa~~~~~~qD~~ia~~i~~~g~~~vIvvNKWDl~~~~~~~~~~~k~~ 315 (444)
T COG1160 238 RKGKITESVEKYS--VARTLKAIERADVVLLVIDATEGISEQDLRIAGLIEEAGRGIVIVVNKWDLVEEDEATMEEFKKK 315 (444)
T ss_pred CCCCCCCCEEEEE--EHHHHHHHHHCCEEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHH
T ss_conf 4664124268875--05467678656889999988878368899999999975897499997532578516679999999
Q ss_pred HHHHHH-HHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCHH---HHHCCCCCCCCCEEEC-C--CCCEEEEEEECCCCC
Q ss_conf 775553-22321000111002232006787763210001111---2201233101210114-7--572599998169873
Q gi|254780321|r 154 IEETIG-ISTEDALLVSAKTGEGIPLLLERIVQQLPSPTSPE---GANAPLKALLIDSWYN-S--YLGVMVLVRIINGQL 226 (606)
Q Consensus 154 i~~~~g-~~~~~ii~vSAktG~GV~~LLd~Iv~~iP~P~~~~---~~~~Pl~alVfds~~D-~--~~G~I~~~RV~sG~l 226 (606)
+...+. ++-..++++||++|.|+..|+++|.+-.-.-...- ..+.-++.-+- +.- + +-.++.+.-..++..
T Consensus 316 i~~~l~~l~~a~i~~iSA~~~~~i~~l~~~i~~~~~~~~~ri~Ts~LN~~l~~a~~--~~pP~~~~G~r~ki~Ya~q~~~ 393 (444)
T COG1160 316 LRRKLPFLDFAPIVFISALTGQGLDKLFEAIKEIYECATRRISTSLLNRVLEDAVA--KHPPPVRYGRRLKIKYATQVST 393 (444)
T ss_pred HHHHHCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH--HCCCCCCCCCEEEEEEEECCCC
T ss_conf 99872213677279997047877278899999999986545476899999999997--3899756881688999963678
Q ss_pred CCCCEEEEECCC
Q ss_conf 558458873355
Q gi|254780321|r 227 TKGQSIRLMGTN 238 (606)
Q Consensus 227 k~Gd~I~~~~~g 238 (606)
++=.-+.+++..
T Consensus 394 ~PP~fvlf~N~~ 405 (444)
T COG1160 394 NPPTFVLFGNRP 405 (444)
T ss_pred CCCEEEEEECCH
T ss_conf 898799993362
No 122
>COG1159 Era GTPase [General function prediction only]
Probab=99.59 E-value=3e-14 Score=115.19 Aligned_cols=157 Identities=24% Similarity=0.309 Sum_probs=107.2
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHCCEEEEEEEEEEEECCCCCEEEEEEEECCCCCH-
Q ss_conf 1799980138987788999999829805444431130586779871950523279999743788438999961787300-
Q gi|254780321|r 12 RNFSIVAHIDHGKSTLADRFIQHCRGLTEREMSSQVLDNMDIERERGITIKAQTVRLNYTSTDAKDYQLNLIDTPGHVD- 90 (606)
Q Consensus 12 RN~~IiaHvDhGKTTL~d~lL~~tg~i~~~~~~~~vlD~~~~EreRGITIka~~~~~~~~~~~~~~y~iNlIDTPGH~D- 90 (606)
==+||||--..|||||.-+|+-.-=.+..+..+. -|-+ ++--+.. ++++|=||||||-.-
T Consensus 7 GfVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QT--------TR~~--------I~GI~t~---~~~QiIfvDTPGih~p 67 (298)
T COG1159 7 GFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQT--------TRNR--------IRGIVTT---DNAQIIFVDTPGIHKP 67 (298)
T ss_pred EEEEEECCCCCCHHHHHHHHHCCCEEEECCCCCH--------HHHH--------EEEEEEC---CCCEEEEEECCCCCCC
T ss_conf 9999986998768999989856825751598531--------1442--------1479986---9844999848988876
Q ss_pred ------H-HHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCC--CCHHHHHHHHHHHH
Q ss_conf ------2-79999999730268999986878865589999999970996799832678875321--13388877555322
Q gi|254780321|r 91 ------F-TYEVSRSLSACEGSLLVVDATQGVEAQTLANVYQAIDNNHEIITVLNKADLPSADP--DRVKKQIEETIGIS 161 (606)
Q Consensus 91 ------F-~~EV~r~l~a~dgaiLvVdA~~Gvq~QT~~~~~~A~~~~l~~I~viNKiD~~~A~~--e~v~~ei~~~~g~~ 161 (606)
+ .-++..+|.-||-+|+||||.++.-+.-.+.+..-...+.|+|.++||+|+...+. ....+.....+++
T Consensus 68 k~~l~~~m~~~a~~sl~dvDlilfvvd~~~~~~~~d~~il~~lk~~~~pvil~iNKID~~~~~~~l~~~~~~~~~~~~f- 146 (298)
T COG1159 68 KHALGELMNKAARSALKDVDLILFVVDADEGWGPGDEFILEQLKKTKTPVILVVNKIDKVKPKTVLLKLIAFLKKLLPF- 146 (298)
T ss_pred CHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHCCC-
T ss_conf 5178899999999872457599999866656891079999977643898699998402578477899999999850883-
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHC
Q ss_conf 3210001110022320067877632100
Q gi|254780321|r 162 TEDALLVSAKTGEGIPLLLERIVQQLPS 189 (606)
Q Consensus 162 ~~~ii~vSAktG~GV~~LLd~Iv~~iP~ 189 (606)
.+++|+||++|.|++.|++.+.+++|.
T Consensus 147 -~~ivpiSA~~g~n~~~L~~~i~~~Lpe 173 (298)
T COG1159 147 -KEIVPISALKGDNVDTLLEIIKEYLPE 173 (298)
T ss_pred -CEEEEEECCCCCCHHHHHHHHHHHCCC
T ss_conf -017995101567889999999985888
No 123
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.59 E-value=6.6e-14 Score=112.84 Aligned_cols=152 Identities=24% Similarity=0.329 Sum_probs=95.3
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHCCEEEEEEEEEEEECCCCCEEEEEEEECCCCCHHH
Q ss_conf 79998013898778899999982980544443113058677987195052327999974378843899996178730027
Q gi|254780321|r 13 NFSIVAHIDHGKSTLADRFIQHCRGLTEREMSSQVLDNMDIERERGITIKAQTVRLNYTSTDAKDYQLNLIDTPGHVDFT 92 (606)
Q Consensus 13 N~~IiaHvDhGKTTL~d~lL~~tg~i~~~~~~~~vlD~~~~EreRGITIka~~~~~~~~~~~~~~y~iNlIDTPGH~DF~ 92 (606)
-+||+|--..|||||.-+| +|. +.. +.++ -|.|-....-.+. ++++.+.|+||||..+..
T Consensus 2 ~VaivG~pNvGKStL~N~L---~g~--~~~----v~~~------p~TTr~~~~~~~~-----~~~~~~~liDTpGi~~~~ 61 (168)
T cd01897 2 TLVIAGYPNVGKSSLVNKL---TRA--KPE----VAPY------PFTTKSLFVGHFD-----YKYLRWQVIDTPGLLDRP 61 (168)
T ss_pred EEEEECCCCCCHHHHHHHH---HCC--CCE----ECCC------CCCCCCCEEEEEE-----ECCCEEEEECCCCCCCCC
T ss_conf 7999889998899999999---589--860----2375------8723574368999-----837276872488655674
Q ss_pred ----HHHHH----HHH-HCCEEEEEEECCCCCC--HHHHHHHHHH---HHCCCCEEEEECCCCCCCCCCCCHHHHHHHHH
Q ss_conf ----99999----997-3026899998687886--5589999999---97099679983267887532113388877555
Q gi|254780321|r 93 ----YEVSR----SLS-ACEGSLLVVDATQGVE--AQTLANVYQA---IDNNHEIITVLNKADLPSADPDRVKKQIEETI 158 (606)
Q Consensus 93 ----~EV~r----~l~-a~dgaiLvVdA~~Gvq--~QT~~~~~~A---~~~~l~~I~viNKiD~~~A~~e~v~~ei~~~~ 158 (606)
..+++ +++ ..|..++|+|+++... ......+... ...+.|+|+|+||+|+... +. ..++.+..
T Consensus 62 ~~~~~~ie~~~~~~l~~~~d~il~viD~~~~~~~~~~~~~~l~~~i~~~~~~~p~i~v~NK~Dl~~~--~~-~~~~~~~~ 138 (168)
T cd01897 62 LEERNTIEMQAITALAHLRAAVLFLFDPSETCGYSLEEQLSLFEEIKPLFKNKPVIVVLNKIDLLTF--ED-LSEIEEEE 138 (168)
T ss_pred HHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCC--CC-HHHHHHHH
T ss_conf 7888899999999998357768999968876784899999999987765258887999947534581--00-79999999
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q ss_conf 32232100011100223200678776321
Q gi|254780321|r 159 GISTEDALLVSAKTGEGIPLLLERIVQQL 187 (606)
Q Consensus 159 g~~~~~ii~vSAktG~GV~~LLd~Iv~~i 187 (606)
.....+++++||++|.|+++|+++|++.+
T Consensus 139 ~~~~~~vi~ISA~~g~Gi~~L~~~i~ell 167 (168)
T cd01897 139 ELEGEEVLKISTLTEEGVDEVKNKACELL 167 (168)
T ss_pred HCCCCCEEEEECCCCCCHHHHHHHHHHHC
T ss_conf 70899889998158969999999999963
No 124
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.57 E-value=1.1e-13 Score=111.41 Aligned_cols=152 Identities=30% Similarity=0.331 Sum_probs=90.0
Q ss_pred CEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHCCEEEEEEEEEEEECCCCCEEEEEEEECCC-CC
Q ss_conf 31799980138987788999999829805444431130586779871950523279999743788438999961787-30
Q gi|254780321|r 11 IRNFSIVAHIDHGKSTLADRFIQHCRGLTEREMSSQVLDNMDIERERGITIKAQTVRLNYTSTDAKDYQLNLIDTPG-HV 89 (606)
Q Consensus 11 IRN~~IiaHvDhGKTTL~d~lL~~tg~i~~~~~~~~vlD~~~~EreRGITIka~~~~~~~~~~~~~~y~iNlIDTPG-H~ 89 (606)
+--+||+|...+|||||.-+|. |. +.. +-|+ -|.|.....-.+.+. ..+.+.|+|||| ..
T Consensus 41 ~p~VaivG~PNvGKSTLlN~L~---g~--~~~----v~~~------~~tT~d~~~~~i~~~----~~~~i~l~DT~G~i~ 101 (204)
T cd01878 41 IPTVALVGYTNAGKSTLFNALT---GA--DVY----AEDQ------LFATLDPTTRRLRLP----DGREVLLTDTVGFIR 101 (204)
T ss_pred CCEEEEECCCCCCHHHHHHHHH---CC--CCE----EECC------CCCCCCCEEEEEEEC----CCCEEEEEECCCCCC
T ss_conf 9879998899998999999994---89--963----4156------776457636689956----997799983686446
Q ss_pred HHH---HHH-HHH---HHHCCEEEEEEECCCCCC-HHHHHHHHHHH---HCCCCEEEEECCCCCCCCCCCCHHHHHHHHH
Q ss_conf 027---999-999---973026899998687886-55899999999---7099679983267887532113388877555
Q gi|254780321|r 90 DFT---YEV-SRS---LSACEGSLLVVDATQGVE-AQTLANVYQAI---DNNHEIITVLNKADLPSADPDRVKKQIEETI 158 (606)
Q Consensus 90 DF~---~EV-~r~---l~a~dgaiLvVdA~~Gvq-~QT~~~~~~A~---~~~l~~I~viNKiD~~~A~~e~v~~ei~~~~ 158 (606)
|-. .|. .++ +.-+|-.|+||||++... .|......... ..+.|+|+|+||+|+.+. +..... +
T Consensus 102 ~~p~~lie~~~~tle~i~~AD~il~vvD~s~~~~~~~~~~~~~~l~~l~~~~k~~i~V~NKiDl~~~--~~~~~~----~ 175 (204)
T cd01878 102 DLPHQLVEAFRSTLEEVAEADLLLHVVDASDPDYEEQIETVEKVLKELGAEDIPMILVLNKIDLLDD--EELEER----L 175 (204)
T ss_pred CCCHHHHHHHHHHHHHHHHCCEEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCC--HHHHHH----H
T ss_conf 7837899999999999973989999997998536677999999999806555760788867047995--758999----9
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q ss_conf 32232100011100223200678776321
Q gi|254780321|r 159 GISTEDALLVSAKTGEGIPLLLERIVQQL 187 (606)
Q Consensus 159 g~~~~~ii~vSAktG~GV~~LLd~Iv~~i 187 (606)
.....+++++||++|.|++.|+++|.+.+
T Consensus 176 ~~~~~~~i~ISA~~g~Gid~L~~~I~e~L 204 (204)
T cd01878 176 EAGRPDAVFISAKTGEGLDELLEAIEELL 204 (204)
T ss_pred HHCCCCEEEEECCCCCCHHHHHHHHHHHC
T ss_conf 70899879998868949999999999559
No 125
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.56 E-value=2e-13 Score=109.66 Aligned_cols=156 Identities=17% Similarity=0.220 Sum_probs=104.1
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHCCEEEEEEEEEEEECCCCCEEEEEEEECCCCCHHH
Q ss_conf 79998013898778899999982980544443113058677987195052327999974378843899996178730027
Q gi|254780321|r 13 NFSIVAHIDHGKSTLADRFIQHCRGLTEREMSSQVLDNMDIERERGITIKAQTVRLNYTSTDAKDYQLNLIDTPGHVDFT 92 (606)
Q Consensus 13 N~~IiaHvDhGKTTL~d~lL~~tg~i~~~~~~~~vlD~~~~EreRGITIka~~~~~~~~~~~~~~y~iNlIDTPGH~DF~ 92 (606)
++.++|--..|||||..|+. .+.+... --||-...-.+.+...+++.+.+++-||.|+..|.
T Consensus 5 kIvilG~~~~GKTsil~r~~--~~~f~~~----------------~pTiG~~~~~~~~~~~~~~~v~l~iwDtaGqe~~r 66 (183)
T cd04152 5 HIVMLGLDSAGKTTVLYRLK--FNEFVNT----------------VPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLR 66 (183)
T ss_pred EEEEECCCCCCHHHHHHHHH--CCCCCCC----------------CCCCCEEEEEEEEECCCCCEEEEEEEECCCCCCCC
T ss_conf 99999999998899999996--4986776----------------87035578999996167866799999789873451
Q ss_pred HHHHHHHHHCCEEEEEEECCCCCCH-HHHHHHHHHH----HCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHH------
Q ss_conf 9999999730268999986878865-5899999999----7099679983267887532113388877555322------
Q gi|254780321|r 93 YEVSRSLSACEGSLLVVDATQGVEA-QTLANVYQAI----DNNHEIITVLNKADLPSADPDRVKKQIEETIGIS------ 161 (606)
Q Consensus 93 ~EV~r~l~a~dgaiLvVdA~~Gvq~-QT~~~~~~A~----~~~l~~I~viNKiD~~~A~~e~v~~ei~~~~g~~------ 161 (606)
.-...-.+-++|+|+|+|+++--.- +....+...+ ..++|++++-||+|++++... .++++.+++.
T Consensus 67 ~l~~~Y~r~a~g~i~V~D~td~~~~~~~~~~l~~~~~~~~~~~~piliv~NK~Dl~~~~~~---~ei~~~l~l~~~~~~~ 143 (183)
T cd04152 67 PLWKSYTRCTDGIVFVVDSVDVERMEEAKTELHKITRFSENQGVPVLVLANKQDLPNALSV---SEVEKLLALHELSAST 143 (183)
T ss_pred EEHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCH---HHHHHHHHHHHHHCCC
T ss_conf 0087674678678999967768899999999999973212379629999866777668788---9999997199986669
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHC
Q ss_conf 3210001110022320067877632100
Q gi|254780321|r 162 TEDALLVSAKTGEGIPLLLERIVQQLPS 189 (606)
Q Consensus 162 ~~~ii~vSAktG~GV~~LLd~Iv~~iP~ 189 (606)
.-.+..|||++|.||++.++.+++.+-.
T Consensus 144 ~~~i~~tSA~tG~gI~e~f~~L~~~i~~ 171 (183)
T cd04152 144 PWHVQPACAIIGEGLQEGLEKLYEMILK 171 (183)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 9899972799796989999999999999
No 126
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.55 E-value=2e-13 Score=109.67 Aligned_cols=151 Identities=25% Similarity=0.283 Sum_probs=102.2
Q ss_pred EECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHCCE-EEEEEEEEEEECCCCCEEEEEEEECCCCCHHHHH
Q ss_conf 980138987788999999829805444431130586779871950-5232799997437884389999617873002799
Q gi|254780321|r 16 IVAHIDHGKSTLADRFIQHCRGLTEREMSSQVLDNMDIERERGIT-IKAQTVRLNYTSTDAKDYQLNLIDTPGHVDFTYE 94 (606)
Q Consensus 16 IiaHvDhGKTTL~d~lL~~tg~i~~~~~~~~vlD~~~~EreRGIT-Ika~~~~~~~~~~~~~~y~iNlIDTPGH~DF~~E 94 (606)
++|+.++|||||..+++. +..... ++..| +......+. .++..+.++++||||+.+|...
T Consensus 1 vvG~~~~GKSsl~~~~~~--~~~~~~--------------~~~~~~~~~~~~~~~---~~~~~~~~~i~D~~g~~~~~~~ 61 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLG--GEFVPE--------------EYETTIIDFYSKTIE---VDGKKVKLQIWDTAGQERFRSL 61 (157)
T ss_pred CCCCCCCCHHHHHHHHHC--CCCCCC--------------CCCCCEEEEEEEEEE---ECCEEEEEEEEECCCCHHHHHH
T ss_conf 929499688999999971--988876--------------468715789999999---9999999999985895115678
Q ss_pred HHHHHHHCCEEEEEEECCCCCCHHHHHHHH--H---HHHCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999997302689999868788655899999--9---99709967998326788753211338887755532232100011
Q gi|254780321|r 95 VSRSLSACEGSLLVVDATQGVEAQTLANVY--Q---AIDNNHEIITVLNKADLPSADPDRVKKQIEETIGISTEDALLVS 169 (606)
Q Consensus 95 V~r~l~a~dgaiLvVdA~~Gvq~QT~~~~~--~---A~~~~l~~I~viNKiD~~~A~~e~v~~ei~~~~g~~~~~ii~vS 169 (606)
....+.-+|++++|+|.++.-.-+....|+ . ....+.++++|.||+|++..+.....++.+.......-..+.+|
T Consensus 62 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~S 141 (157)
T cd00882 62 RRLYYRGADGIILVYDVTDRESFENVKEWLLLILINKEGENIPIILVGNKIDLPEERVVSEEELAEQLAKELGVPYFETS 141 (157)
T ss_pred HHHHHHHCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCHHCCCCCHHHHHHHHHHHCCCEEEEEC
T ss_conf 99997535799999865888889999999999999752589849999853561540668899999999987898699984
Q ss_pred HHCCCCCCHHHHHHHH
Q ss_conf 1002232006787763
Q gi|254780321|r 170 AKTGEGIPLLLERIVQ 185 (606)
Q Consensus 170 AktG~GV~~LLd~Iv~ 185 (606)
|++|.||+++++.|++
T Consensus 142 a~~~~~i~~l~~~i~~ 157 (157)
T cd00882 142 AKTGENVEELFEELAE 157 (157)
T ss_pred CCCCCCHHHHHHHHHC
T ss_conf 7888399999999859
No 127
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.55 E-value=6.5e-14 Score=112.88 Aligned_cols=147 Identities=24% Similarity=0.360 Sum_probs=93.4
Q ss_pred EECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHCCEEEEEEEEEEEECCCCCEEEEEEEECCCCCHH---H
Q ss_conf 9801389877889999998298054444311305867798719505232799997437884389999617873002---7
Q gi|254780321|r 16 IVAHIDHGKSTLADRFIQHCRGLTEREMSSQVLDNMDIERERGITIKAQTVRLNYTSTDAKDYQLNLIDTPGHVDF---T 92 (606)
Q Consensus 16 IiaHvDhGKTTL~d~lL~~tg~i~~~~~~~~vlD~~~~EreRGITIka~~~~~~~~~~~~~~y~iNlIDTPGH~DF---~ 92 (606)
|||.-..|||||.-+|+ |. +. .+.| .-|.|.......+. +.++.+-|+||||..++ +
T Consensus 1 ivG~pNvGKSTL~N~L~---g~---~~---~vs~------~pgtTrd~~~~~~~-----~~~~~~~lvDtpGi~~~~~~~ 60 (158)
T cd01879 1 LVGNPNVGKTTLFNALT---GA---RQ---KVGN------WPGVTVEKKEGRFK-----LGGKEIEIVDLPGTYSLSPYS 60 (158)
T ss_pred CCCCCCCCHHHHHHHHH---CC---CC---EECC------CCCCEEEEEEEEEE-----ECCEEEEEEECCCCCCCCCCC
T ss_conf 97989888999999995---99---86---4617------89827634788996-----299379999798741256413
Q ss_pred H--HHHHHH---HHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCC-HHHHHHHHHHHHHHHHH
Q ss_conf 9--999999---73026899998687886558999999997099679983267887532113-38887755532232100
Q gi|254780321|r 93 Y--EVSRSL---SACEGSLLVVDATQGVEAQTLANVYQAIDNNHEIITVLNKADLPSADPDR-VKKQIEETIGISTEDAL 166 (606)
Q Consensus 93 ~--EV~r~l---~a~dgaiLvVdA~~Gvq~QT~~~~~~A~~~~l~~I~viNKiD~~~A~~e~-v~~ei~~~~g~~~~~ii 166 (606)
- .+.+.. .-+|.+++|+||++ ++. ....+....+.+.|+|+|+||+|+....... ..+++++.+++ +++
T Consensus 61 ~~e~i~~~~~~~~~~d~vl~vvD~~~-~~~-~l~~~~~l~~~~~p~ivV~NK~D~~~~~~~~~~~~~l~~~~~~---~ii 135 (158)
T cd01879 61 EDEKVARDFLLGEKPDLIVNVVDATN-LER-NLYLTLQLLELGLPVVVALNMIDEAEKRGIKIDLDKLSELLGV---PVV 135 (158)
T ss_pred HHHHHHHHHHHHCCCCCEEEEEECCH-HHH-HHHHHHHHHHCCCCEEEEEEHHHHHHHCCCHHHHHHHHHHCCC---CEE
T ss_conf 56789999998517871799977740-677-6899999986599889994027765522546679999987199---489
Q ss_pred HHHHHCCCCCCHHHHHHHHHH
Q ss_conf 011100223200678776321
Q gi|254780321|r 167 LVSAKTGEGIPLLLERIVQQL 187 (606)
Q Consensus 167 ~vSAktG~GV~~LLd~Iv~~i 187 (606)
++||++|.|+++|++.|.+.+
T Consensus 136 ~iSA~~g~Gi~~L~~~i~el~ 156 (158)
T cd01879 136 PTSARKGEGIDELKDAIAELA 156 (158)
T ss_pred EEECCCCCCHHHHHHHHHHHH
T ss_conf 998778979999999999986
No 128
>pfam00071 Ras Ras family. Includes sub-families Ras, Rab, Rac, Ral, Ran, Rap Ypt1 and more. Shares P-loop motif with GTP_EFTU, arf and myosin_head. See pfam00009 pfam00025, pfam00063. As regards Rab GTPases, these are important regulators of vesicle formation, motility and fusion. They share a fold in common with all Ras GTPases: this is a six-stranded beta-sheet surrounded by five alpha-helices.
Probab=99.54 E-value=1.7e-13 Score=110.11 Aligned_cols=155 Identities=24% Similarity=0.233 Sum_probs=101.9
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHCCEEEEEEEEEEEECCCCCEEEEEEEECCCCCHHHH
Q ss_conf 99980138987788999999829805444431130586779871950523279999743788438999961787300279
Q gi|254780321|r 14 FSIVAHIDHGKSTLADRFIQHCRGLTEREMSSQVLDNMDIERERGITIKAQTVRLNYTSTDAKDYQLNLIDTPGHVDFTY 93 (606)
Q Consensus 14 ~~IiaHvDhGKTTL~d~lL~~tg~i~~~~~~~~vlD~~~~EreRGITIka~~~~~~~~~~~~~~y~iNlIDTPGH~DF~~ 93 (606)
++++|.-+.|||||..|++ +|.+.+.. .-.+........+. .+++.+.++|.||||...|..
T Consensus 2 i~vvG~~~vGKTsli~r~~--~~~f~~~~-------------~~t~~~~~~~~~~~---~~~~~~~~~i~Dt~G~e~~~~ 63 (162)
T pfam00071 2 LVLVGDGGVGKSSLLIRFT--QNKFPEEY-------------IPTIGVDFYTKTIE---VDGKTVKLQIWDTAGQERFRA 63 (162)
T ss_pred EEEECCCCCCHHHHHHHHH--HCCCCCCC-------------CCCCEEEEEEEEEE---ECCEEEEEEEEECCCCHHHHH
T ss_conf 8999979977999999996--19999874-------------77413556789999---999999999997898720467
Q ss_pred HHHHHHHHCCEEEEEEECCCCCCHHHHHHHHH-HHH---CCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999973026899998687886558999999-997---09967998326788753211338887755532232100011
Q gi|254780321|r 94 EVSRSLSACEGSLLVVDATQGVEAQTLANVYQ-AID---NNHEIITVLNKADLPSADPDRVKKQIEETIGISTEDALLVS 169 (606)
Q Consensus 94 EV~r~l~a~dgaiLvVdA~~Gvq~QT~~~~~~-A~~---~~l~~I~viNKiD~~~A~~e~v~~ei~~~~g~~~~~ii~vS 169 (606)
.....++-+|++|+|.|.++=---+....|.. +.+ .++|+|+|-||+|++..+.- -.++.+++..--.-..+.+|
T Consensus 64 ~~~~~~~~ad~~iivfd~~~~~S~~~i~~~~~~i~~~~~~~~piilvgnK~Dl~~~~~i-~~~e~~~~a~~~~~~y~e~S 142 (162)
T pfam00071 64 LRPLYYRGAQGFLLVYDITSRDSFENVKKWLEEILRHADDNVPIVLVGNKCDLEDQRVV-STEEGEALAKELGLPFMETS 142 (162)
T ss_pred HHHHHHCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCHHHCCCC-CHHHHHHHHHHHCCEEEEEC
T ss_conf 88998625765504234898899999999999999857988628899752474651889-99999999998099799973
Q ss_pred HHCCCCCCHHHHHHHHHH
Q ss_conf 100223200678776321
Q gi|254780321|r 170 AKTGEGIPLLLERIVQQL 187 (606)
Q Consensus 170 AktG~GV~~LLd~Iv~~i 187 (606)
|++|.||+++++.|++.+
T Consensus 143 ak~g~gI~~~F~~i~~~i 160 (162)
T pfam00071 143 AKTNENVEEAFEELAREI 160 (162)
T ss_pred CCCCCCHHHHHHHHHHHH
T ss_conf 788829999999999996
No 129
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.54 E-value=1.8e-13 Score=109.99 Aligned_cols=154 Identities=21% Similarity=0.269 Sum_probs=93.6
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHCCEEEEEEEEEEEECCCCCEEEEEEEECCCC----
Q ss_conf 7999801389877889999998298054444311305867798719505232799997437884389999617873----
Q gi|254780321|r 13 NFSIVAHIDHGKSTLADRFIQHCRGLTEREMSSQVLDNMDIERERGITIKAQTVRLNYTSTDAKDYQLNLIDTPGH---- 88 (606)
Q Consensus 13 N~~IiaHvDhGKTTL~d~lL~~tg~i~~~~~~~~vlD~~~~EreRGITIka~~~~~~~~~~~~~~y~iNlIDTPGH---- 88 (606)
++||||--..|||||.-+| +|. +.. +.|+ -|-|.....-.+.+ . ....+-|+||||.
T Consensus 2 ~VAiiG~pNvGKSTLlN~l---~~~--~~~----V~~~------pgTT~~~~~g~i~~--~--~~~~i~~~DtpGi~~~~ 62 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAI---SNA--KPK----IADY------PFTTLVPNLGVVRV--D--DGRSFVVADIPGLIEGA 62 (170)
T ss_pred CEEEECCCCCCHHHHHHHH---HCC--CCE----EECC------CCCCCCCEEEEEEE--C--CCCEEEEECCCCCCCCC
T ss_conf 5899899999899999999---678--760----3256------66523744779993--6--98569996488644455
Q ss_pred -CHH--HHHHHHHHHHCCEEEEEEECCCCCCH-HHHHHHHHHHH------CCCCEEEEECCCCCCCCCCCCHHHHHHHHH
Q ss_conf -002--79999999730268999986878865-58999999997------099679983267887532113388877555
Q gi|254780321|r 89 -VDF--TYEVSRSLSACEGSLLVVDATQGVEA-QTLANVYQAID------NNHEIITVLNKADLPSADPDRVKKQIEETI 158 (606)
Q Consensus 89 -~DF--~~EV~r~l~a~dgaiLvVdA~~Gvq~-QT~~~~~~A~~------~~l~~I~viNKiD~~~A~~e~v~~ei~~~~ 158 (606)
.++ +.+.-|.+.-+|-.++|||++.+..+ ++...+..-++ .+-|.|+|+||+|+.+. +...+.+++.+
T Consensus 63 ~~~~~l~~~~l~~i~~advil~vvD~~~~~~~~~~~~~i~~~l~~~~~~~~~kp~ilv~NK~Dl~~~--~~~~~~~~~~~ 140 (170)
T cd01898 63 SEGKGLGHRFLRHIERTRLLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLDE--EELFELLKELL 140 (170)
T ss_pred CCCCCHHHHHHHCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCHHHHCCCCEEEEEHHHCCCH--HHHHHHHHHHH
T ss_conf 4662248999861334561799998998789899999999999982744403865067762024283--56389999999
Q ss_pred H-HHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q ss_conf 3-2232100011100223200678776321
Q gi|254780321|r 159 G-ISTEDALLVSAKTGEGIPLLLERIVQQL 187 (606)
Q Consensus 159 g-~~~~~ii~vSAktG~GV~~LLd~Iv~~i 187 (606)
. ....+++++||++|.|+++|++.|.+.+
T Consensus 141 ~~~~~~~vi~iSA~~g~gi~~L~~~I~~~L 170 (170)
T cd01898 141 KELWGKPVFPISALTGEGLDELLRKLAELL 170 (170)
T ss_pred HHCCCCCEEEEECCCCCCHHHHHHHHHHHC
T ss_conf 856999589997547979999999999669
No 130
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.53 E-value=1.3e-13 Score=110.82 Aligned_cols=147 Identities=21% Similarity=0.333 Sum_probs=97.6
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHCCEEEEEEEEEEEECCCCCEEEEEEEECCCCCHHHH
Q ss_conf 99980138987788999999829805444431130586779871950523279999743788438999961787300279
Q gi|254780321|r 14 FSIVAHIDHGKSTLADRFIQHCRGLTEREMSSQVLDNMDIERERGITIKAQTVRLNYTSTDAKDYQLNLIDTPGHVDFTY 93 (606)
Q Consensus 14 ~~IiaHvDhGKTTL~d~lL~~tg~i~~~~~~~~vlD~~~~EreRGITIka~~~~~~~~~~~~~~y~iNlIDTPGH~DF~~ 93 (606)
++++|--+.|||||.-|+. .+.+...- ..++ |.+++ .+. .+++.+.+.||||+..|..
T Consensus 2 I~llG~~~~GKTsll~~~~--~~~f~~~~-~pTi----------g~~~~----~i~-----~~~~~l~iwDt~G~e~~~~ 59 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIA--GGQFSEDT-IPTV----------GFNMR----KVT-----KGNVTLKVWDLGGQPRFRS 59 (159)
T ss_pred EEEECCCCCCHHHHHHHHH--CCCCCCCC-CCCC----------CEEEE----EEE-----ECCEEEEEEECCCHHHHHH
T ss_conf 8999999986999999997--59998861-6732----------50589----999-----8999999997983587799
Q ss_pred HHHHHHHHCCEEEEEEECCCCCCHHHHHH----HHHHH----HCCCCEEEEECCCCCCCCCC-CCHHHHHHHHHHHHH--
Q ss_conf 99999973026899998687886558999----99999----70996799832678875321-133888775553223--
Q gi|254780321|r 94 EVSRSLSACEGSLLVVDATQGVEAQTLAN----VYQAI----DNNHEIITVLNKADLPSADP-DRVKKQIEETIGIST-- 162 (606)
Q Consensus 94 EV~r~l~a~dgaiLvVdA~~Gvq~QT~~~----~~~A~----~~~l~~I~viNKiD~~~A~~-e~v~~ei~~~~g~~~-- 162 (606)
-..+-++.|+|+++|+|+++ .++... ++..+ ..++|++++.||+|++++.. +++.+++ ++-.+..
T Consensus 60 l~~~y~~~~~~ii~V~D~sd---~~s~~~~~~~l~~~~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~~-~~~~~~~~~ 135 (159)
T cd04159 60 MWERYCRGVNAIVYVVDAAD---RTALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGALSVDELIEQM-NLKSITDRE 135 (159)
T ss_pred HHHHHHCCCCEEEECCCCCC---HHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCHHHHHHHH-HHHHHHCCC
T ss_conf 99987468636875157787---88999999999999854434898289888356764347899999999-999873499
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHH
Q ss_conf 210001110022320067877632
Q gi|254780321|r 163 EDALLVSAKTGEGIPLLLERIVQQ 186 (606)
Q Consensus 163 ~~ii~vSAktG~GV~~LLd~Iv~~ 186 (606)
-.++.+|||+|.||+++++-++++
T Consensus 136 ~~~~~~SAktg~gI~e~f~wL~~~ 159 (159)
T cd04159 136 VSCYSISCKEKTNIDIVLDWLIKH 159 (159)
T ss_pred CEEEEEECCCCCCHHHHHHHHHCC
T ss_conf 879999796896989999999659
No 131
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.52 E-value=3.5e-13 Score=107.94 Aligned_cols=150 Identities=23% Similarity=0.332 Sum_probs=102.2
Q ss_pred HCEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHCCEEEEEEEEEEEECCCCCEEEEEEEECCCCC
Q ss_conf 53179998013898778899999982980544443113058677987195052327999974378843899996178730
Q gi|254780321|r 10 RIRNFSIVAHIDHGKSTLADRFIQHCRGLTEREMSSQVLDNMDIERERGITIKAQTVRLNYTSTDAKDYQLNLIDTPGHV 89 (606)
Q Consensus 10 ~IRN~~IiaHvDhGKTTL~d~lL~~tg~i~~~~~~~~vlD~~~~EreRGITIka~~~~~~~~~~~~~~y~iNlIDTPGH~ 89 (606)
+=-.+.++|--++|||||..++. .+.+... .-|+......+.+ +++.+++.||+|+.
T Consensus 14 k~~KililG~~~sGKTsil~~l~--~~~~~~~----------------~pT~G~~~~~i~~-----~~~~~~iwD~~G~e 70 (174)
T cd04153 14 KEYKVIIVGLDNAGKTTILYQFL--LGEVVHT----------------SPTIGSNVEEIVY-----KNIRFLMWDIGGQE 70 (174)
T ss_pred CEEEEEEECCCCCCHHHHHHHHH--CCCCCCC----------------CCCCCCCEEEEEE-----CCEEEEEEECCCCC
T ss_conf 77999999899998899999997--3992771----------------6723604699997-----88899999899986
Q ss_pred HHHHHHHHHHHHCCEEEEEEECCCCCC-HHHHHHHHHHHH----CCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHH--
Q ss_conf 027999999973026899998687886-558999999997----0996799832678875321133888775553223--
Q gi|254780321|r 90 DFTYEVSRSLSACEGSLLVVDATQGVE-AQTLANVYQAID----NNHEIITVLNKADLPSADPDRVKKQIEETIGIST-- 162 (606)
Q Consensus 90 DF~~EV~r~l~a~dgaiLvVdA~~Gvq-~QT~~~~~~A~~----~~l~~I~viNKiD~~~A~~e~v~~ei~~~~g~~~-- 162 (606)
.|..-.+.-.+-+||+|+|||+++--. ...+..++..+. .+.|++++.||.|++++.. .+||.+.++++.
T Consensus 71 ~~~~~~~~y~~~a~~ii~VvD~sd~~~~~~~~~~l~~~l~~~~~~~~pili~~NK~Dl~~~~~---~~ei~~~l~l~~~~ 147 (174)
T cd04153 71 SLRSSWNTYYTNTDAVILVIDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKGAMT---PAEISESLGLTSIR 147 (174)
T ss_pred CCCCHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCC---HHHHHHHHHHHHHH
T ss_conf 566226777057753799997678889999999999997261016982899995555655789---99999997477763
Q ss_pred ---HHHHHHHHHCCCCCCHHHHHHHH
Q ss_conf ---21000111002232006787763
Q gi|254780321|r 163 ---EDALLVSAKTGEGIPLLLERIVQ 185 (606)
Q Consensus 163 ---~~ii~vSAktG~GV~~LLd~Iv~ 185 (606)
-.+..|||++|.||++.++-+.+
T Consensus 148 ~~~~~~~~~SAktG~Gv~e~f~wLa~ 173 (174)
T cd04153 148 DHTWHIQGCCALTGEGLPEGLDWIAS 173 (174)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHC
T ss_conf 59809999668589198999999866
No 132
>COG2229 Predicted GTPase [General function prediction only]
Probab=99.51 E-value=3.3e-13 Score=108.15 Aligned_cols=167 Identities=19% Similarity=0.278 Sum_probs=113.8
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHCCEEEEEEEEEEEECCCCC-EEEEEEEECCCCCHH
Q ss_conf 7999801389877889999998298054444311305867798719505232799997437884-389999617873002
Q gi|254780321|r 13 NFSIVAHIDHGKSTLADRFIQHCRGLTEREMSSQVLDNMDIERERGITIKAQTVRLNYTSTDAK-DYQLNLIDTPGHVDF 91 (606)
Q Consensus 13 N~~IiaHvDhGKTTL~d~lL~~tg~i~~~~~~~~vlD~~~~EreRGITIka~~~~~~~~~~~~~-~y~iNlIDTPGH~DF 91 (606)
-|.|+|-+|+||||.+.++.+...........+ ++... .|-.|+ ++.|-...-. ++.+.|.|||||.-|
T Consensus 12 KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~---~s~k~--kr~tTv-----a~D~g~~~~~~~~~v~LfgtPGq~RF 81 (187)
T COG2229 12 KIVVIGPVGAGKTTFVRALSDKPLVITEADASS---VSGKG--KRPTTV-----AMDFGSIELDEDTGVHLFGTPGQERF 81 (187)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCEEECCCCC---CCCCC--CCCEEE-----EECCCCEEECCCCEEEEECCCCCHHH
T ss_conf 699984436640667887653456201033555---54466--455068-----63241137758616899658970778
Q ss_pred HHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCC-CCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 799999997302689999868788655899999999709-9679983267887532113388877555322321000111
Q gi|254780321|r 92 TYEVSRSLSACEGSLLVVDATQGVEAQTLANVYQAIDNN-HEIITVLNKADLPSADPDRVKKQIEETIGISTEDALLVSA 170 (606)
Q Consensus 92 ~~EV~r~l~a~dgaiLvVdA~~Gvq~QT~~~~~~A~~~~-l~~I~viNKiD~~~A~~e~v~~ei~~~~g~~~~~ii~vSA 170 (606)
-+--+-.++-+.||+++||++.++----++-+..-.... +|.++++||.|+++|.+.+...|..++ .+..-+++..+|
T Consensus 82 ~fm~~~l~~ga~gaivlVDss~~~~~~a~~ii~f~~~~~~ip~vVa~NK~DL~~a~ppe~i~e~l~~-~~~~~~vi~~~a 160 (187)
T COG2229 82 KFMWEILSRGAVGAIVLVDSSRPITFHAEEIIDFLTSRNPIPVVVAINKQDLFDALPPEKIREALKL-ELLSVPVIEIDA 160 (187)
T ss_pred HHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCHHHHHHHHHH-CCCCCCEEEEEC
T ss_conf 9899987487642899995699964678999998852068878999504225778998999999971-127986443442
Q ss_pred HCCCCCCHHHHHHHHH-HHCC
Q ss_conf 0022320067877632-1000
Q gi|254780321|r 171 KTGEGIPLLLERIVQQ-LPSP 190 (606)
Q Consensus 171 ktG~GV~~LLd~Iv~~-iP~P 190 (606)
..+.|..+.|+.+..+ .+.|
T Consensus 161 ~e~~~~~~~L~~ll~~~~~~~ 181 (187)
T COG2229 161 TEGEGARDQLDVLLLKDLLGS 181 (187)
T ss_pred CCCHHHHHHHHHHHHHCCCCC
T ss_conf 463417899999873035675
No 133
>cd03690 Tet_II Tet_II: This subfamily represents domain II of ribosomal protection proteins Tet(M) and Tet(O). This domain has homology to domain II of the elongation factors EF-G and EF-2. Tet(M) and Tet(O) catalyze the release of tetracycline (Tc) from the ribosome in a GTP-dependent manner thereby mediating Tc resistance. Tcs are broad-spectrum antibiotics. Typical Tcs bind to the ribosome and inhibit the elongation phase of protein synthesis, by inhibiting the occupation of site A by aminoacyl-tRNA.
Probab=99.51 E-value=1.5e-14 Score=117.26 Aligned_cols=84 Identities=17% Similarity=0.372 Sum_probs=72.5
Q ss_pred HCCCCCCCCCEEECCCCCEEEEEEECCCCCCCCCEEEEECCCCCCCCCCCCCCCC-CEEEEHHCCCCCHHHHHHCCCCCC
Q ss_conf 0123310121011475725999981698735584588733556421012223355-412401012471233220110024
Q gi|254780321|r 197 NAPLKALLIDSWYNSYLGVMVLVRIINGQLTKGQSIRLMGTNAKYQVERIGILTP-KMIDIEALYPGEIGVMIASIKEVS 275 (606)
Q Consensus 197 ~~Pl~alVfds~~D~~~G~I~~~RV~sG~lk~Gd~I~~~~~g~~~~v~~ig~~~~-~~~~v~~l~aGdVG~ii~gik~l~ 275 (606)
++||+|+||+..+||+.|+++|+||+||+|+.++.+. .+.+++.++.++..+.. +..+++++.||||+. +.++.
T Consensus 1 e~~l~a~VFKi~~d~~~grl~yvRv~sG~l~~~~~v~-~~~~~~eki~~l~~~~~~~~~~v~~~~AGdI~a----v~gl~ 75 (85)
T cd03690 1 ESELSGTVFKIERDDKGERLAYLRLYSGTLRLRDSVR-VNREEKIKITELRVFNNGEVVTADTVTAGDIAI----LTGLK 75 (85)
T ss_pred CCCCEEEEEEEEECCCCCEEEEEEEEEEEECCCCEEE-CCCCCEEEECEEEEEECCCEEECCEECCCCEEE----EECCC
T ss_conf 9973499998887799985999998340982898896-589960402348999089956977898999999----98999
Q ss_pred CCCCCCEECC
Q ss_conf 4445420004
Q gi|254780321|r 276 HTRVGDTITD 285 (606)
Q Consensus 276 ~~~vGDTl~~ 285 (606)
++++||||.+
T Consensus 76 ~~~~GDtlgd 85 (85)
T cd03690 76 GLRVGDVLGD 85 (85)
T ss_pred CCCCCCCCCC
T ss_conf 8837772278
No 134
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.50 E-value=4.5e-13 Score=107.24 Aligned_cols=149 Identities=17% Similarity=0.274 Sum_probs=98.7
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHCCEEEEEEEEEEEECCCCCEEEEEEEECCCCCHHH
Q ss_conf 79998013898778899999982980544443113058677987195052327999974378843899996178730027
Q gi|254780321|r 13 NFSIVAHIDHGKSTLADRFIQHCRGLTEREMSSQVLDNMDIERERGITIKAQTVRLNYTSTDAKDYQLNLIDTPGHVDFT 92 (606)
Q Consensus 13 N~~IiaHvDhGKTTL~d~lL~~tg~i~~~~~~~~vlD~~~~EreRGITIka~~~~~~~~~~~~~~y~iNlIDTPGH~DF~ 92 (606)
|+.++|.-.+|||||..+|. ++.........++ |..+ ..+. .+++.+++.|++|+..|.
T Consensus 1 ~Il~lGl~~sGKTtil~~l~--~~~~~~~~~~pT~----------G~~~----~~~~-----~~~~~~~iwD~~G~~~~r 59 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLK--PENAQSQIIVPTV----------GFNV----ESFE-----KGNLSFTAFDMSGQGKYR 59 (162)
T ss_pred CEEEECCCCCCHHHHHHHHH--CCCCCCCCCCCCC----------CEEE----EEEE-----ECCEEEEEEECCCCCCCC
T ss_conf 99999999998899999997--2898756416850----------7578----9998-----399889999858874420
Q ss_pred HHHHHHHHHCCEEEEEEECCCCCCHH-HHHHHHHHHH------CCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHH---
Q ss_conf 99999997302689999868788655-8999999997------0996799832678875321133888775553223---
Q gi|254780321|r 93 YEVSRSLSACEGSLLVVDATQGVEAQ-TLANVYQAID------NNHEIITVLNKADLPSADPDRVKKQIEETIGIST--- 162 (606)
Q Consensus 93 ~EV~r~l~a~dgaiLvVdA~~Gvq~Q-T~~~~~~A~~------~~l~~I~viNKiD~~~A~~e~v~~ei~~~~g~~~--- 162 (606)
.-..+-.+-|+|+|+|||+++=-.-+ .+..++..++ .++|++++.||+|+++|-. .+||.+.++++.
T Consensus 60 ~lw~~y~~~~~~iI~VvDssd~~~~~~~~~~l~~ll~~~~~~~~~~PiLI~~NK~D~~~~~~---~~ei~~~l~l~~~~~ 136 (162)
T cd04157 60 GLWEHYYKNIQGIIFVIDSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDALT---AVKITQLLGLENIKD 136 (162)
T ss_pred HHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHHHCHHHCCCCCEEEEEEECCCCCCCCC---HHHHHHHHCHHHHCC
T ss_conf 55898705674489997076388899999999999717655179845999981477889999---999998858665248
Q ss_pred --HHHHHHHHHCCCCCCHHHHHHHH
Q ss_conf --21000111002232006787763
Q gi|254780321|r 163 --EDALLVSAKTGEGIPLLLERIVQ 185 (606)
Q Consensus 163 --~~ii~vSAktG~GV~~LLd~Iv~ 185 (606)
-.+++|||++|.||++.|+=+..
T Consensus 137 ~~~~i~~~SA~tG~Gi~e~f~WL~~ 161 (162)
T cd04157 137 KPWHIFASNALTGEGLDEGVQWLQA 161 (162)
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHC
T ss_conf 9649999789789798999999865
No 135
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.50 E-value=6.2e-13 Score=106.29 Aligned_cols=151 Identities=18% Similarity=0.220 Sum_probs=102.5
Q ss_pred CEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHCCEEEEEEEEEEEECCCCCEEEEEEEECCCCCH
Q ss_conf 31799980138987788999999829805444431130586779871950523279999743788438999961787300
Q gi|254780321|r 11 IRNFSIVAHIDHGKSTLADRFIQHCRGLTEREMSSQVLDNMDIERERGITIKAQTVRLNYTSTDAKDYQLNLIDTPGHVD 90 (606)
Q Consensus 11 IRN~~IiaHvDhGKTTL~d~lL~~tg~i~~~~~~~~vlD~~~~EreRGITIka~~~~~~~~~~~~~~y~iNlIDTPGH~D 90 (606)
=.++.++|--++|||||..+|. .|.+... -.|+..+..++.+ +++.+++.||.|+.-
T Consensus 17 ~~kililGl~~sGKTsil~~l~--~~~~~~~----------------~pTvg~~~~~~~~-----~~~~l~iwD~~Gqe~ 73 (182)
T PTZ00133 17 EVRILMVGLDAAGKTTILYKLK--LGEVVTT----------------IPTIGFNVETVEY-----KNLKFTMWDVGGQDK 73 (182)
T ss_pred EEEEEEECCCCCCHHHHHHHHH--CCCCCCC----------------CCCCCCCEEEEEE-----CCEEEEEEECCCCCC
T ss_conf 4799999679988999999996--2997773----------------7868845699997-----888999998999845
Q ss_pred HHHHHHHHHHHCCEEEEEEECCCCC-CHHHHHHHHHHHH----CCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHH---
Q ss_conf 2799999997302689999868788-6558999999997----0996799832678875321133888775553223---
Q gi|254780321|r 91 FTYEVSRSLSACEGSLLVVDATQGV-EAQTLANVYQAID----NNHEIITVLNKADLPSADPDRVKKQIEETIGIST--- 162 (606)
Q Consensus 91 F~~EV~r~l~a~dgaiLvVdA~~Gv-q~QT~~~~~~A~~----~~l~~I~viNKiD~~~A~~e~v~~ei~~~~g~~~--- 162 (606)
|..-...-.+-|||+|+|||+++-= ..+.+..+...+. .+.|++++.||.|+|+|... .||.+.++++.
T Consensus 74 ~r~lw~~yy~~~~giI~VvD~sd~~~~~~~~~~l~~~l~~~~~~~~piLi~~NK~Dl~~a~~~---~ei~~~l~l~~~~~ 150 (182)
T PTZ00133 74 LRPLWRHYYQNTNGIIFVVDSNDRERIGDARQELEKMLAEDELRNAVLLVFANKQDLPNAMST---TEVTEKLGLHSVRQ 150 (182)
T ss_pred CCHHHHHCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHCCHHHCCCEEEEEECCCCCCCCCCH---HHHHHHHCHHHHHC
T ss_conf 474787605676449999966787899999999999971442248859999706687788899---99999969555615
Q ss_pred --HHHHHHHHHCCCCCCHHHHHHHHHH
Q ss_conf --2100011100223200678776321
Q gi|254780321|r 163 --EDALLVSAKTGEGIPLLLERIVQQL 187 (606)
Q Consensus 163 --~~ii~vSAktG~GV~~LLd~Iv~~i 187 (606)
-.+.+|||++|.||++.++-+.+.+
T Consensus 151 ~~~~i~~~SA~tG~Gi~e~f~wL~~~i 177 (182)
T PTZ00133 151 RNWYIQGCCATTAQGLYEGLDWLSANI 177 (182)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 995899825758949899999999999
No 136
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.50 E-value=5.8e-13 Score=106.48 Aligned_cols=147 Identities=17% Similarity=0.257 Sum_probs=98.3
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHCCEEEEEEEEEEEECCCCCEEEEEEEECCCCCHHH
Q ss_conf 79998013898778899999982980544443113058677987195052327999974378843899996178730027
Q gi|254780321|r 13 NFSIVAHIDHGKSTLADRFIQHCRGLTEREMSSQVLDNMDIERERGITIKAQTVRLNYTSTDAKDYQLNLIDTPGHVDFT 92 (606)
Q Consensus 13 N~~IiaHvDhGKTTL~d~lL~~tg~i~~~~~~~~vlD~~~~EreRGITIka~~~~~~~~~~~~~~y~iNlIDTPGH~DF~ 92 (606)
.+.++|--++|||||..|+. .|.+... --|+......+.+ +++.+++.|++|+.-|.
T Consensus 2 KililG~~~sGKTsll~~l~--~~~~~~~----------------~pT~g~~~~~~~~-----~~~~l~iwD~~G~~~~r 58 (159)
T cd04150 2 RILMVGLDAAGKTTILYKLK--LGEIVTT----------------IPTIGFNVETVEY-----KNISFTVWDVGGQDKIR 58 (159)
T ss_pred EEEEECCCCCCHHHHHHHHH--CCCCCCC----------------CCCCCCCEEEEEE-----CCEEEEEEECCCCCCCC
T ss_conf 99999999999899999997--2996775----------------8968701799998-----98999999789972146
Q ss_pred HHHHHHHHHCCEEEEEEECCCCCCH-HHHHHHHHHHH----CCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHH-----
Q ss_conf 9999999730268999986878865-58999999997----0996799832678875321133888775553223-----
Q gi|254780321|r 93 YEVSRSLSACEGSLLVVDATQGVEA-QTLANVYQAID----NNHEIITVLNKADLPSADPDRVKKQIEETIGIST----- 162 (606)
Q Consensus 93 ~EV~r~l~a~dgaiLvVdA~~Gvq~-QT~~~~~~A~~----~~l~~I~viNKiD~~~A~~e~v~~ei~~~~g~~~----- 162 (606)
.-.+.-.+-|+|+|+|||+++--.- ..+..++..+. .+.|++++.||+|+|++... +|+.+.++++.
T Consensus 59 ~l~~~Y~~~a~~iI~VvD~sd~~~~~~~~~~l~~~l~~~~~~~~pili~~NK~Dl~~~~~~---~ei~~~l~l~~~~~~~ 135 (159)
T cd04150 59 PLWRHYFQNTQGLIFVVDSNDRERIGEAREELQRMLNEDELRDAVLLVFANKQDLPNAMSA---AEVTDKLGLHSLRNRN 135 (159)
T ss_pred HHHHHHCCCCCEEEEEEECCCHHHHHHHHHHHHHHHCCHHHCCCEEEEEEECCCCCCCCCH---HHHHHHHCHHHHHCCC
T ss_conf 5678647687389999977777899999999999962353369829999975667789899---9999996866663798
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHH
Q ss_conf 21000111002232006787763
Q gi|254780321|r 163 EDALLVSAKTGEGIPLLLERIVQ 185 (606)
Q Consensus 163 ~~ii~vSAktG~GV~~LLd~Iv~ 185 (606)
-.+.++||++|.||++.|+-+.+
T Consensus 136 ~~i~~~SA~tG~Gv~e~f~WL~~ 158 (159)
T cd04150 136 WYIQATCATSGDGLYEGLDWLSN 158 (159)
T ss_pred EEEEEEECCCCCCHHHHHHHHHC
T ss_conf 59998268679398999999855
No 137
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.50 E-value=2.9e-13 Score=108.54 Aligned_cols=148 Identities=18% Similarity=0.238 Sum_probs=99.6
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHCCEEEEEEEEEEEECCCCCEEEEEEEECCCCCHH
Q ss_conf 17999801389877889999998298054444311305867798719505232799997437884389999617873002
Q gi|254780321|r 12 RNFSIVAHIDHGKSTLADRFIQHCRGLTEREMSSQVLDNMDIERERGITIKAQTVRLNYTSTDAKDYQLNLIDTPGHVDF 91 (606)
Q Consensus 12 RN~~IiaHvDhGKTTL~d~lL~~tg~i~~~~~~~~vlD~~~~EreRGITIka~~~~~~~~~~~~~~y~iNlIDTPGH~DF 91 (606)
-++.++|.-++|||||..+|. .+..... -.|+..+...+.+ +++.+++.||+|+..|
T Consensus 10 ~kililG~~~sGKTsil~~l~--~~~~~~~----------------~pTvg~~~~~~~~-----~~~~l~iwD~~Gqe~~ 66 (168)
T cd04149 10 MRILMLGLDAAGKTTILYKLK--LGQSVTT----------------IPTVGFNVETVTY-----KNVKFNVWDVGGQDKI 66 (168)
T ss_pred EEEEEECCCCCCHHHHHHHHH--CCCCCCC----------------CCCCCCEEEEEEE-----CCEEEEEEECCCCCCC
T ss_conf 899999999999899999996--6998760----------------2626700799998-----9889999989999746
Q ss_pred HHHHHHHHHHCCEEEEEEECCCCCC-HHHHHHHHHHHH----CCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHH----
Q ss_conf 7999999973026899998687886-558999999997----0996799832678875321133888775553223----
Q gi|254780321|r 92 TYEVSRSLSACEGSLLVVDATQGVE-AQTLANVYQAID----NNHEIITVLNKADLPSADPDRVKKQIEETIGIST---- 162 (606)
Q Consensus 92 ~~EV~r~l~a~dgaiLvVdA~~Gvq-~QT~~~~~~A~~----~~l~~I~viNKiD~~~A~~e~v~~ei~~~~g~~~---- 162 (606)
..-...-.+-++|+++|||+++--. .+.+..++..+. .+.|++++.||+|+|++-.. +||.+.++++.
T Consensus 67 r~l~~~y~~~~~~iifVvDstd~~~~~~~~~~l~~~l~~~~~~~~pilI~~NK~Dl~~~~~~---~ei~~~l~l~~~~~~ 143 (168)
T cd04149 67 RPLWRHYYTGTQGLIFVVDSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPDAMKP---HEIQEKLGLTRIRDR 143 (168)
T ss_pred CCHHHHHCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHCHHHCCCEEEEEEECCCCCCCCCH---HHHHHHHCHHHHHCC
T ss_conf 60657643788668999837767899999999999971452279869999975667778899---999999787655179
Q ss_pred -HHHHHHHHHCCCCCCHHHHHHHH
Q ss_conf -21000111002232006787763
Q gi|254780321|r 163 -EDALLVSAKTGEGIPLLLERIVQ 185 (606)
Q Consensus 163 -~~ii~vSAktG~GV~~LLd~Iv~ 185 (606)
-.+.+|||++|.||++.|+-+.+
T Consensus 144 ~~~i~~~SA~tG~Gv~e~f~WL~~ 167 (168)
T cd04149 144 NWYVQPSCATSGDGLYEGLTWLSS 167 (168)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHC
T ss_conf 809998068789697999999865
No 138
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.50 E-value=7.9e-13 Score=105.62 Aligned_cols=150 Identities=19% Similarity=0.224 Sum_probs=101.3
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHCCEEEEEEEEEEEECCCCCEEEEEEEECCCCCHH
Q ss_conf 17999801389877889999998298054444311305867798719505232799997437884389999617873002
Q gi|254780321|r 12 RNFSIVAHIDHGKSTLADRFIQHCRGLTEREMSSQVLDNMDIERERGITIKAQTVRLNYTSTDAKDYQLNLIDTPGHVDF 91 (606)
Q Consensus 12 RN~~IiaHvDhGKTTL~d~lL~~tg~i~~~~~~~~vlD~~~~EreRGITIka~~~~~~~~~~~~~~y~iNlIDTPGH~DF 91 (606)
..+.++|--++|||||..++. .|..... -.|+......+.+ +++.+++.||+|+.-|
T Consensus 14 ~kililG~~~~GKTsil~~l~--~~~~~~~----------------~pTvg~~~~~~~~-----~~~~l~iwD~~Gqe~~ 70 (175)
T smart00177 14 MRILMVGLDAAGKTTILYKLK--LGESVTT----------------IPTIGFNVETVTY-----KNISFTVWDVGGQDKI 70 (175)
T ss_pred EEEEEECCCCCCHHHHHHHHH--CCCCCCC----------------CCCCCCEEEEEEE-----CCEEEEEEECCCCCCC
T ss_conf 999999889999899999996--5997775----------------7978810799998-----9899999989998545
Q ss_pred HHHHHHHHHHCCEEEEEEECCCCCCH-HHHHHHHHHH----HCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHH----
Q ss_conf 79999999730268999986878865-5899999999----70996799832678875321133888775553223----
Q gi|254780321|r 92 TYEVSRSLSACEGSLLVVDATQGVEA-QTLANVYQAI----DNNHEIITVLNKADLPSADPDRVKKQIEETIGIST---- 162 (606)
Q Consensus 92 ~~EV~r~l~a~dgaiLvVdA~~Gvq~-QT~~~~~~A~----~~~l~~I~viNKiD~~~A~~e~v~~ei~~~~g~~~---- 162 (606)
..-...-.+-|+|+|+|||+++--.- +.+..+...+ ..+.|++++.||+|+|++... .+|.+.++++.
T Consensus 71 r~l~~~Yy~~a~~iIfVvD~sd~~~~~~~~~~l~~~l~~~~~~~~piLil~NK~Dl~~~~~~---~ei~~~l~l~~~~~~ 147 (175)
T smart00177 71 RPLWRHYYTNTQGLIFVVDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPDAMKA---AEITEKLGLHSIRDR 147 (175)
T ss_pred CHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHHHHHHCCHHHCCCEEEEEEECCCCCCCCCH---HHHHHHHCHHHHCCC
T ss_conf 53677755776189999866877899999999999963153169869999845667678899---999999686654079
Q ss_pred -HHHHHHHHHCCCCCCHHHHHHHHHH
Q ss_conf -2100011100223200678776321
Q gi|254780321|r 163 -EDALLVSAKTGEGIPLLLERIVQQL 187 (606)
Q Consensus 163 -~~ii~vSAktG~GV~~LLd~Iv~~i 187 (606)
-.+.+|||++|.||++.++-|.+.+
T Consensus 148 ~~~i~~~SA~tG~GI~e~f~wL~~~i 173 (175)
T smart00177 148 NWYIQPTCATSGDGLYEGLTWLSNNL 173 (175)
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 75999826878969899999999984
No 139
>cd03689 RF3_II RF3_II: this subfamily represents the domain II of bacterial Release Factor 3 (RF3). Termination of protein synthesis by the ribosome requires two release factor (RF) classes. The class II RF3 is a GTPase that removes class I RFs (RF1 or RF2) from the ribosome after release of the nascent polypeptide. RF3 in the GDP state binds to the ribosomal class I RF complex, followed by an exchange of GDP for GTP and release of the class I RF. Sequence comparison of class II release factors with elongation factors shows that prokaryotic RF3 is more similar to EF-G whereas eukaryotic eRF3 is more similar to eEF1A, implying that their precise function may differ.
Probab=99.49 E-value=1.6e-14 Score=116.90 Aligned_cols=80 Identities=15% Similarity=0.358 Sum_probs=70.5
Q ss_pred CCCCCEEE--CC-CCCEEEEEEECCCCCCCCCEEEEECCCCCCCCCCCCCCC-CCEEEEHHCCCCCHHHHHHCCCCCCCC
Q ss_conf 10121011--47-572599998169873558458873355642101222335-541240101247123322011002444
Q gi|254780321|r 202 ALLIDSWY--NS-YLGVMVLVRIINGQLTKGQSIRLMGTNAKYQVERIGILT-PKMIDIEALYPGEIGVMIASIKEVSHT 277 (606)
Q Consensus 202 alVfds~~--D~-~~G~I~~~RV~sG~lk~Gd~I~~~~~g~~~~v~~ig~~~-~~~~~v~~l~aGdVG~ii~gik~l~~~ 277 (606)
+||||+.. || |+|+++|+||+||++++|++|.+.++++++++.++..|. -++.++++++|||| +++.+++++
T Consensus 1 GfVFKiqanmd~~h~grlaf~RV~SG~l~~G~~v~n~rtgK~~ri~r~~~~~a~~Re~ie~A~aGDI----vav~g~~~~ 76 (85)
T cd03689 1 GFVFKIQANMDPAHRDRIAFVRVCSGKFERGMKVKHVRLGKEVRLSNPQQFFAQDRETVDEAYPGDI----IGLVNPGNF 76 (85)
T ss_pred CEEEEEECCCCCCCCCEEEEEEEEEEEECCCCEEEECCCCCEEEECCHHHHHHCCCEEECEEECCCE----EEEECCCCC
T ss_conf 9489985379910077189999987298689999971279678835445332277008034938989----998279987
Q ss_pred CCCCEECC
Q ss_conf 45420004
Q gi|254780321|r 278 RVGDTITD 285 (606)
Q Consensus 278 ~vGDTl~~ 285 (606)
++|||||+
T Consensus 77 ~tGDTL~~ 84 (85)
T cd03689 77 QIGDTLTE 84 (85)
T ss_pred EECCCCCC
T ss_conf 31465137
No 140
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.48 E-value=4.7e-13 Score=107.11 Aligned_cols=146 Identities=22% Similarity=0.269 Sum_probs=97.1
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHCCEEEEEEEEEEEECCCCCEEEEEEEECCCCCHHHH
Q ss_conf 99980138987788999999829805444431130586779871950523279999743788438999961787300279
Q gi|254780321|r 14 FSIVAHIDHGKSTLADRFIQHCRGLTEREMSSQVLDNMDIERERGITIKAQTVRLNYTSTDAKDYQLNLIDTPGHVDFTY 93 (606)
Q Consensus 14 ~~IiaHvDhGKTTL~d~lL~~tg~i~~~~~~~~vlD~~~~EreRGITIka~~~~~~~~~~~~~~y~iNlIDTPGH~DF~~ 93 (606)
+.++|--+.|||||..|+. .|.+.... -||......+.| +++.+++.||+||..|..
T Consensus 2 il~lG~~~~GKTsll~~~~--~~~~~~~~----------------pTig~~~~~i~~-----~~~~~~iwD~~G~e~~r~ 58 (158)
T cd04151 2 ILILGLDNAGKTTILYRLQ--LGEVVTTI----------------PTIGFNVETVTY-----KNLKFQVWDLGGQTSIRP 58 (158)
T ss_pred EEEECCCCCCHHHHHHHHH--CCCCCCCC----------------CCCCCCEEEEEE-----CCEEEEEEECCCCCCCCH
T ss_conf 9999999998999999997--09967757----------------848824699998-----988999996798624462
Q ss_pred HHHHHHHHCCEEEEEEECCCCCCHHHH-HHHHHHH----HCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHH-----H
Q ss_conf 999999730268999986878865589-9999999----70996799832678875321133888775553223-----2
Q gi|254780321|r 94 EVSRSLSACEGSLLVVDATQGVEAQTL-ANVYQAI----DNNHEIITVLNKADLPSADPDRVKKQIEETIGIST-----E 163 (606)
Q Consensus 94 EV~r~l~a~dgaiLvVdA~~Gvq~QT~-~~~~~A~----~~~l~~I~viNKiD~~~A~~e~v~~ei~~~~g~~~-----~ 163 (606)
-...-.+-|+|+|+|+|+++--.-+.. ..++..+ ..+.|++++.||+|++++..+ .++.+.++++. -
T Consensus 59 ~~~~y~~~~~~ii~VvD~sd~~~~~~~~~~l~~~l~~~~~~~~piliv~NK~Dl~~~~~~---~~i~~~l~l~~~~~~~~ 135 (158)
T cd04151 59 YWRCYYSNTDAIIYVVDSTDRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGALSE---AEISEKLGLSELKDRTW 135 (158)
T ss_pred HHHHHCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCH---HHHHHHHHHHHHHCCCC
T ss_conf 788746678899999745787899999999999983465369819999976677657799---99999985987416996
Q ss_pred HHHHHHHHCCCCCCHHHHHHHH
Q ss_conf 1000111002232006787763
Q gi|254780321|r 164 DALLVSAKTGEGIPLLLERIVQ 185 (606)
Q Consensus 164 ~ii~vSAktG~GV~~LLd~Iv~ 185 (606)
.++++||++|.||++.++-+++
T Consensus 136 ~~~~tSA~tG~gV~e~f~wL~~ 157 (158)
T cd04151 136 SIFKTSAIKGEGLDEGMDWLVN 157 (158)
T ss_pred EEEEEECCCCCCHHHHHHHHHC
T ss_conf 8999678789399999999856
No 141
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.48 E-value=2.2e-12 Score=102.61 Aligned_cols=147 Identities=20% Similarity=0.249 Sum_probs=98.8
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHCCEEEEEEEEEEEECCCCCEEEEEEEECCCCCHHHH
Q ss_conf 99980138987788999999829805444431130586779871950523279999743788438999961787300279
Q gi|254780321|r 14 FSIVAHIDHGKSTLADRFIQHCRGLTEREMSSQVLDNMDIERERGITIKAQTVRLNYTSTDAKDYQLNLIDTPGHVDFTY 93 (606)
Q Consensus 14 ~~IiaHvDhGKTTL~d~lL~~tg~i~~~~~~~~vlD~~~~EreRGITIka~~~~~~~~~~~~~~y~iNlIDTPGH~DF~~ 93 (606)
+.++|--..|||||..|+. .+.+... --||......+.+ + +++.+++.||.|...|..
T Consensus 2 ivilG~~~~GKTsil~r~~--~~~~~~~----------------~pTig~~~~~~~~---~-~~~~l~iwD~~G~e~~~~ 59 (160)
T cd04156 2 VLLLGLDSAGKSTLLYKLK--HAELVTT----------------IPTVGFNVEMLQL---E-KHLSLTVWDVGGQEKMRT 59 (160)
T ss_pred EEEECCCCCCHHHHHHHHH--CCCCCCC----------------CCCCCEEEEEEEE---C-CEEEEEEEECCCCCCCCH
T ss_conf 9999999999999999995--6987775----------------7761503899998---9-989999997898624741
Q ss_pred HHHHHHHHCCEEEEEEECCCCCCH-HHHHHHHHHHH----CCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHH------H
Q ss_conf 999999730268999986878865-58999999997----099679983267887532113388877555322------3
Q gi|254780321|r 94 EVSRSLSACEGSLLVVDATQGVEA-QTLANVYQAID----NNHEIITVLNKADLPSADPDRVKKQIEETIGIS------T 162 (606)
Q Consensus 94 EV~r~l~a~dgaiLvVdA~~Gvq~-QT~~~~~~A~~----~~l~~I~viNKiD~~~A~~e~v~~ei~~~~g~~------~ 162 (606)
-...-++-+||+|+|+|+++--.- +.+..+...+. .++|++++.||+|+|++.. .+|+.+.++++ .
T Consensus 60 ~~~~y~~~a~~iI~V~D~td~~~~~~~~~~~~~~l~~~~~~~~pili~~NK~Dl~~~~~---~~ei~~~l~~~~~~~~~~ 136 (160)
T cd04156 60 VWKCYLENTDGLVYVVDSSDEARLDESQKELKHILKNEHIKGVPVVLLANKQDLPGALT---AEEITRRFKLKKYCSDRD 136 (160)
T ss_pred HHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCC---HHHHHHHHHHHHHHHCCC
T ss_conf 58877456778999985686788787999999998663537874999998633656679---999999986999985399
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHH
Q ss_conf 21000111002232006787763
Q gi|254780321|r 163 EDALLVSAKTGEGIPLLLERIVQ 185 (606)
Q Consensus 163 ~~ii~vSAktG~GV~~LLd~Iv~ 185 (606)
-.+.+|||+||.||+++++.+..
T Consensus 137 ~~i~~~SAktGegi~e~f~~la~ 159 (160)
T cd04156 137 WYVQPCSAVTGEGLAEAFRKLAS 159 (160)
T ss_pred CEEEEEECCCCCCHHHHHHHHHC
T ss_conf 99998668849599999999857
No 142
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.47 E-value=1.2e-12 Score=104.30 Aligned_cols=153 Identities=23% Similarity=0.293 Sum_probs=103.1
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHCCEEEEEEEEEEEECCCCCEEEEEEEECCCCCHHHH
Q ss_conf 99980138987788999999829805444431130586779871950523279999743788438999961787300279
Q gi|254780321|r 14 FSIVAHIDHGKSTLADRFIQHCRGLTEREMSSQVLDNMDIERERGITIKAQTVRLNYTSTDAKDYQLNLIDTPGHVDFTY 93 (606)
Q Consensus 14 ~~IiaHvDhGKTTL~d~lL~~tg~i~~~~~~~~vlD~~~~EreRGITIka~~~~~~~~~~~~~~y~iNlIDTPGH~DF~~ 93 (606)
++++|.-+.|||||..|++ .|.+...- . ..-|+....+ .+. .+++.+.++|.||||+.+|..
T Consensus 3 ivvvG~~~vGKTsli~r~~--~~~f~~~~-~----------~ti~~~~~~~--~~~---~~~~~~~l~iwDt~g~~~~~~ 64 (161)
T cd01863 3 ILLIGDSGVGKSSLLLRFT--DDTFDPDL-A----------ATIGVDFKVK--TLT---VDGKKVKLAIWDTAGQERFRT 64 (161)
T ss_pred EEEECCCCCCHHHHHHHHH--HCCCCCCC-C----------CCCCCCCEEE--EEE---ECCEEEEEEEEECCCCCCCCC
T ss_conf 9999979957999999996--39999984-8----------7313342389--999---999999999999999842353
Q ss_pred HHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHH-----CCCCEEEEECCCCCCCCCCC-CHHHHHHHHHHHHHHHHHH
Q ss_conf 99999973026899998687886558999999997-----09967998326788753211-3388877555322321000
Q gi|254780321|r 94 EVSRSLSACEGSLLVVDATQGVEAQTLANVYQAID-----NNHEIITVLNKADLPSADPD-RVKKQIEETIGISTEDALL 167 (606)
Q Consensus 94 EV~r~l~a~dgaiLvVdA~~Gvq~QT~~~~~~A~~-----~~l~~I~viNKiD~~~A~~e-~v~~ei~~~~g~~~~~ii~ 167 (606)
-....++-+|++++|.|.++----+....|+..+. .++++++|-||.|+++..+. +...+.....++ ..+.
T Consensus 65 ~~~~~~~~a~~~ilvfd~~~~~Sf~~i~~~~~~i~~~~~~~~~~~ilVgnK~D~~~~~v~~~~~~~~a~~~~~---~y~e 141 (161)
T cd01863 65 LTSSYYRGAQGVILVYDVTRRDTFTNLETWLNELETYSTNNDIVKMLVGNKIDKENREVTREEGLKFARKHNM---LFIE 141 (161)
T ss_pred CHHHHHHHCCEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHCCC---EEEE
T ss_conf 4224413215348997678265699999999999985688887378873104400068999999999998699---9999
Q ss_pred HHHHCCCCCCHHHHHHHHHH
Q ss_conf 11100223200678776321
Q gi|254780321|r 168 VSAKTGEGIPLLLERIVQQL 187 (606)
Q Consensus 168 vSAktG~GV~~LLd~Iv~~i 187 (606)
+|||+|.||+++++.|++.+
T Consensus 142 ~Sak~g~nV~~~F~~l~~~i 161 (161)
T cd01863 142 TSAKTRDGVQQAFEELVEKI 161 (161)
T ss_pred ECCCCCCCHHHHHHHHHHHC
T ss_conf 71586815999999999709
No 143
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.46 E-value=3.7e-12 Score=101.13 Aligned_cols=154 Identities=19% Similarity=0.244 Sum_probs=101.8
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHCCEEEEEEEEEEEECCCCCEEEEEEEECCCCCHHHH
Q ss_conf 99980138987788999999829805444431130586779871950523279999743788438999961787300279
Q gi|254780321|r 14 FSIVAHIDHGKSTLADRFIQHCRGLTEREMSSQVLDNMDIERERGITIKAQTVRLNYTSTDAKDYQLNLIDTPGHVDFTY 93 (606)
Q Consensus 14 ~~IiaHvDhGKTTL~d~lL~~tg~i~~~~~~~~vlD~~~~EreRGITIka~~~~~~~~~~~~~~y~iNlIDTPGH~DF~~ 93 (606)
++|+|--+.|||+|..|++. +.+..... .+. |-+. ...+. .+++.+.++|+||+|+.+|..
T Consensus 2 i~ivG~~~vGKTsli~r~~~--~~f~~~~~-pTi----------~~~~---~~~~~---~~~~~~~l~i~Dt~g~~~~~~ 62 (160)
T cd00876 2 VVVLGAGGVGKSAITIQFVK--GTFVEEYD-PTI----------EDSY---RKTIV---VDGETYTLDILDTAGQEEFSA 62 (160)
T ss_pred EEEECCCCCCHHHHHHHHHH--CCCCCCCC-CCE----------EEEE---EEEEE---ECCEEEEEEEEECCCCHHHHH
T ss_conf 99999699679999999961--95998778-830----------0489---99999---766999999997999623557
Q ss_pred HHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHH-----HCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999997302689999868788655899999999-----70996799832678875321133888775553223210001
Q gi|254780321|r 94 EVSRSLSACEGSLLVVDATQGVEAQTLANVYQAI-----DNNHEIITVLNKADLPSADPDRVKKQIEETIGISTEDALLV 168 (606)
Q Consensus 94 EV~r~l~a~dgaiLvVdA~~Gvq~QT~~~~~~A~-----~~~l~~I~viNKiD~~~A~~e~v~~ei~~~~g~~~~~ii~v 168 (606)
-....++-+|++++|.|.++----+....|+.-+ ...+|+++|-||.|++..+. -..++++++..--....+.+
T Consensus 63 ~~~~~~~~a~~~ilvfd~~~~~Sf~~i~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~-V~~~e~~~~a~~~~~~y~e~ 141 (160)
T cd00876 63 MRDLYIRQGDGFILVYSITDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLENERQ-VSKEEGKALAKEWGCPFIET 141 (160)
T ss_pred HHHHHHHHCCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCHHCCC-CCHHHHHHHHHHCCCEEEEE
T ss_conf 88999764368999732898789999999999999972878862999997456223078-99999999999849979998
Q ss_pred HHHCCCCCCHHHHHHHHHH
Q ss_conf 1100223200678776321
Q gi|254780321|r 169 SAKTGEGIPLLLERIVQQL 187 (606)
Q Consensus 169 SAktG~GV~~LLd~Iv~~i 187 (606)
|||+|.||+++++.|++.+
T Consensus 142 Sak~g~nV~e~F~~i~~~i 160 (160)
T cd00876 142 SAKDNINIDEVFKLLVREI 160 (160)
T ss_pred CCCCCCCHHHHHHHHHHHC
T ss_conf 4798949899999999729
No 144
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.45 E-value=3.5e-12 Score=101.23 Aligned_cols=159 Identities=19% Similarity=0.269 Sum_probs=103.9
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHCCEEEEEEEEEEEECCCCCEEEEEEEECCCCCHHH
Q ss_conf 79998013898778899999982980544443113058677987195052327999974378843899996178730027
Q gi|254780321|r 13 NFSIVAHIDHGKSTLADRFIQHCRGLTEREMSSQVLDNMDIERERGITIKAQTVRLNYTSTDAKDYQLNLIDTPGHVDFT 92 (606)
Q Consensus 13 N~~IiaHvDhGKTTL~d~lL~~tg~i~~~~~~~~vlD~~~~EreRGITIka~~~~~~~~~~~~~~y~iNlIDTPGH~DF~ 92 (606)
-+.++|...-|||+|+-|+. .+.+-...-.. .-|+....+.+ ..+++.+.++|.||+|...|.
T Consensus 2 KIv~vGd~~VGKTsli~r~~--~~~f~~~~~~~----------Ti~~~~~~k~~-----~~~~~~v~l~iwDtaG~e~~~ 64 (191)
T cd04112 2 KVMLLGDSGVGKTCLLVRFK--DGAFLNGNFIA----------TVGIDFRNKVV-----TVDGVKVKLQIWDTAGQERFR 64 (191)
T ss_pred EEEEECCCCCCHHHHHHHHH--HCCCCCCCCCC----------CCCEEEEEEEE-----EECCEEEEEEEEECCCCCCCC
T ss_conf 89999949987999999999--59789998677----------65247799999-----999999999999799863346
Q ss_pred HHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHH-HHH---CCCCEEEEECCCCCCCCCCC--CHHHHHHHHHHHHHHHHH
Q ss_conf 999999973026899998687886558999999-997---09967998326788753211--338887755532232100
Q gi|254780321|r 93 YEVSRSLSACEGSLLVVDATQGVEAQTLANVYQ-AID---NNHEIITVLNKADLPSADPD--RVKKQIEETIGISTEDAL 166 (606)
Q Consensus 93 ~EV~r~l~a~dgaiLvVdA~~Gvq~QT~~~~~~-A~~---~~l~~I~viNKiD~~~A~~e--~v~~ei~~~~g~~~~~ii 166 (606)
.-....++-+|++|||.|.++=---+-...|.. ..+ .++++|+|-||+|+++-+.- .-.+++...+++ ..+
T Consensus 65 ~l~~~~~~~a~~~ilvydit~~~Sf~~l~~w~~~i~~~~~~~~~iilVGNK~DL~~~r~V~~~e~~~~a~~~~~---~f~ 141 (191)
T cd04112 65 SVTHAYYRDAHALLLLYDITNKASFDNIRAWLTEIKEYAQEDVVIMLLGNKADMSGERVVKREDGERLAKEYGV---PFM 141 (191)
T ss_pred CCHHHHHHCCCEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHCCC---EEE
T ss_conf 46477711777789997279889999999999999986667853898612465530267999999999998299---799
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHCCC
Q ss_conf 0111002232006787763210001
Q gi|254780321|r 167 LVSAKTGEGIPLLLERIVQQLPSPT 191 (606)
Q Consensus 167 ~vSAktG~GV~~LLd~Iv~~iP~P~ 191 (606)
.+|||+|.||+++++.|+..+..-.
T Consensus 142 EtSAkt~~nI~e~F~~i~~~i~~~~ 166 (191)
T cd04112 142 ETSAKTGLNVELAFTAVAKELKHRK 166 (191)
T ss_pred EECCCCCCCHHHHHHHHHHHHHHHC
T ss_conf 9854898097999999999998742
No 145
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.45 E-value=4.2e-12 Score=100.74 Aligned_cols=157 Identities=25% Similarity=0.293 Sum_probs=100.8
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHCCEEEEEEEEEEEECCCCCEEEEEEEECCCCCHHH
Q ss_conf 79998013898778899999982980544443113058677987195052327999974378843899996178730027
Q gi|254780321|r 13 NFSIVAHIDHGKSTLADRFIQHCRGLTEREMSSQVLDNMDIERERGITIKAQTVRLNYTSTDAKDYQLNLIDTPGHVDFT 92 (606)
Q Consensus 13 N~~IiaHvDhGKTTL~d~lL~~tg~i~~~~~~~~vlD~~~~EreRGITIka~~~~~~~~~~~~~~y~iNlIDTPGH~DF~ 92 (606)
.++++|-.+.|||+|.-|++ .+.+.+.. ..+ =|.....+.+ ..+++.++++|.||+|+..|.
T Consensus 3 KivviGd~~vGKTsli~r~~--~~~f~~~~-~~T----------ig~~~~~k~i-----~~~~~~v~l~iwDtaG~e~~~ 64 (163)
T cd01860 3 KLVLLGDSSVGKSSLVLRFV--KNEFSENQ-EST----------IGAAFLTQTV-----NLDDTTVKFEIWDTAGQERYR 64 (163)
T ss_pred EEEEECCCCCCHHHHHHHHH--HCCCCCCC-CCC----------CCEEEEEEEE-----EECCEEEEEEEEECCCCHHHH
T ss_conf 99999959968999999994--39899986-886----------6678899999-----999999999999799971002
Q ss_pred HHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHH----CCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999973026899998687886558999999997----0996799832678875321133888775553223210001
Q gi|254780321|r 93 YEVSRSLSACEGSLLVVDATQGVEAQTLANVYQAID----NNHEIITVLNKADLPSADPDRVKKQIEETIGISTEDALLV 168 (606)
Q Consensus 93 ~EV~r~l~a~dgaiLvVdA~~Gvq~QT~~~~~~A~~----~~l~~I~viNKiD~~~A~~e~v~~ei~~~~g~~~~~ii~v 168 (606)
.-....++-+|++|||.|.++=---+....|...+. ..+++++|-||+|+..-+. --.++.+++..-..-..+.+
T Consensus 65 ~~~~~~~~~a~~~ilvydit~~~Sf~~~~~w~~~i~~~~~~~~~iilVgnK~DL~~~r~-V~~~e~~~~a~~~~~~~~E~ 143 (163)
T cd01860 65 SLAPMYYRGAAAAIVVYDITSEESFEKAKSWVKELQRNASPNIIIALVGNKADLESKRQ-VSTEEAQEYADENGLLFFET 143 (163)
T ss_pred HHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCHHHCCC-CCHHHHHHHHHHCCCEEEEE
T ss_conf 78898851677149998189979999999999999985598723677553357565089-99999999999829979998
Q ss_pred HHHCCCCCCHHHHHHHHHHH
Q ss_conf 11002232006787763210
Q gi|254780321|r 169 SAKTGEGIPLLLERIVQQLP 188 (606)
Q Consensus 169 SAktG~GV~~LLd~Iv~~iP 188 (606)
|||+|.||+++++.|++.+|
T Consensus 144 SAk~~~nV~e~F~~l~~~i~ 163 (163)
T cd01860 144 SAKTGENVNELFTEIAKKLP 163 (163)
T ss_pred CCCCCCCHHHHHHHHHHHCC
T ss_conf 62659078999999998583
No 146
>TIGR00231 small_GTP small GTP-binding protein domain; InterPro: IPR005225 Proteins with a small GTP-binding domain include Ras, RhoA, Rab11, translation elongation factor G, translation initiation factor IF-2, tetratcycline resistance protein TetM, CDC42, Era, ADP-ribosylation factors, tdhF, and many others . In some proteins the domain occurs more than once. Among them there is a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.; GO: 0005525 GTP binding.
Probab=99.45 E-value=3.7e-13 Score=107.79 Aligned_cols=166 Identities=30% Similarity=0.329 Sum_probs=128.6
Q ss_pred HCEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCC--CCEEECCCHHHHHHCCEEEEEEEEEEEECCCCCEEEEEEEECCC
Q ss_conf 5317999801389877889999998298054444--31130586779871950523279999743788438999961787
Q gi|254780321|r 10 RIRNFSIVAHIDHGKSTLADRFIQHCRGLTEREM--SSQVLDNMDIERERGITIKAQTVRLNYTSTDAKDYQLNLIDTPG 87 (606)
Q Consensus 10 ~IRN~~IiaHvDhGKTTL~d~lL~~tg~i~~~~~--~~~vlD~~~~EreRGITIka~~~~~~~~~~~~~~y~iNlIDTPG 87 (606)
...++.++||.++|||||..+++...+.+..... .....+.....+++|.+|. . .. ..| .+++|++||||
T Consensus 2 ~~~~~~~~g~~~~Gk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~-----~~-~~w-~~~~~~~d~~G 73 (186)
T TIGR00231 2 KDIKIGIVGDPNVGKSTLLNRLLGNKGSITESGPTDGTTRDYVTESIEEDGKTIT-G-----AT-FQW-GYKFNLLDTPG 73 (186)
T ss_pred CCEEEEEEECCCCCHHHHHHHHHHCCCCEEECCCCCCCCHHHHEEEEEECCEEEE-E-----EE-EEC-CEEEEEEECCC
T ss_conf 7505899734776604555445410120010232333200000011345580234-3-----43-102-42789862577
Q ss_pred ---CCHH-------HHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCHHHHH---
Q ss_conf ---3002-------799999997302689999868788655899999999709967998326788753211338887---
Q gi|254780321|r 88 ---HVDF-------TYEVSRSLSACEGSLLVVDATQGVEAQTLANVYQAIDNNHEIITVLNKADLPSADPDRVKKQI--- 154 (606)
Q Consensus 88 ---H~DF-------~~EV~r~l~a~dgaiLvVdA~~Gvq~QT~~~~~~A~~~~l~~I~viNKiD~~~A~~e~v~~ei--- 154 (606)
|.+| ..++.+++..+|.+++++++.++++.|+...+..+...+.+++++.||+|+....++.+....
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~ 153 (186)
T TIGR00231 74 LHRQEDYDALRRLYYPEVLSSLEVLDLVILVLDVEDGLEKDTKEIIHHADKYGVPILLVGNKIDLKDEKPGYFVDLKPHL 153 (186)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCEEEHHHHH
T ss_conf 11355554454332234454443333333222111001025677875322127416998513365546754010000345
Q ss_pred -HHHHHHHHHH-HHHHHHHCCCCCCHHHHHH
Q ss_conf -7555322321-0001110022320067877
Q gi|254780321|r 155 -EETIGISTED-ALLVSAKTGEGIPLLLERI 183 (606)
Q Consensus 155 -~~~~g~~~~~-ii~vSAktG~GV~~LLd~I 183 (606)
.......... .++.|+.++.|++.+.+.+
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (186)
T TIGR00231 154 ASLFAKLNGEPHFIPLSAETGKGIDSLFGLV 184 (186)
T ss_pred HHHHHHHCCCCCEEECCHHHHCCHHHHHHHH
T ss_conf 5555542366401111001110045566654
No 147
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=99.44 E-value=7.4e-12 Score=99.08 Aligned_cols=153 Identities=21% Similarity=0.304 Sum_probs=101.2
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHCCEEEEEEEEEEEECCCCCEEEEEEEECCCCCHHHH
Q ss_conf 99980138987788999999829805444431130586779871950523279999743788438999961787300279
Q gi|254780321|r 14 FSIVAHIDHGKSTLADRFIQHCRGLTEREMSSQVLDNMDIERERGITIKAQTVRLNYTSTDAKDYQLNLIDTPGHVDFTY 93 (606)
Q Consensus 14 ~~IiaHvDhGKTTL~d~lL~~tg~i~~~~~~~~vlD~~~~EreRGITIka~~~~~~~~~~~~~~y~iNlIDTPGH~DF~~ 93 (606)
++++|...-|||+|.-|++ .+.+...... + =|++...+.. ..+++.+.++|.||||+..|..
T Consensus 3 ivllGd~~VGKTsli~r~~--~~~f~~~~~~-T----------ig~~~~~~~~-----~~~~~~~~l~iwDtaG~e~f~~ 64 (161)
T cd04124 3 IILLGDSAVGKSKLVERFL--MDGYEPQQLS-T----------YALTLYKHNA-----KFEGKTILVDFWDTAGQERFQT 64 (161)
T ss_pred EEEECCCCCCHHHHHHHHH--HCCCCCCCCC-C----------CCEEEEEEEE-----EECCEEEEEEEEECCCCCCCCH
T ss_conf 9999989967899999998--0977997266-5----------4157999999-----9999999999997999843432
Q ss_pred HHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHH---HCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999997302689999868788655899999999---7099679983267887532113388877555322321000111
Q gi|254780321|r 94 EVSRSLSACEGSLLVVDATQGVEAQTLANVYQAI---DNNHEIITVLNKADLPSADPDRVKKQIEETIGISTEDALLVSA 170 (606)
Q Consensus 94 EV~r~l~a~dgaiLvVdA~~Gvq~QT~~~~~~A~---~~~l~~I~viNKiD~~~A~~e~v~~ei~~~~g~~~~~ii~vSA 170 (606)
-....++-++|+|||.|.+.=--=+....|..-+ ...+|+|+|-||+|++.. +.++-.++..-..-..+.+||
T Consensus 65 ~~~~y~~~a~~~ilvfDit~~~Sf~~~~~w~~~i~~~~~~~p~ilVgNK~DL~~~----~~~~~~~~a~~~~~~f~etSA 140 (161)
T cd04124 65 MHASYYHKAHACILVFDVTRKITYKNLSKWYEELREYRPEIPCIVVANKIDLDPS----VTQKKFNFAEKHNLPLYYVSA 140 (161)
T ss_pred HHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCH----HHHHHHHHHHHCCCEEEEEEC
T ss_conf 4699735687679999689778899999999999986869989999997117742----589999999986991999907
Q ss_pred HCCCCCCHHHHHHHHHHH
Q ss_conf 002232006787763210
Q gi|254780321|r 171 KTGEGIPLLLERIVQQLP 188 (606)
Q Consensus 171 ktG~GV~~LLd~Iv~~iP 188 (606)
|+|.||+++++.++..+-
T Consensus 141 k~g~nV~e~F~~l~~~~i 158 (161)
T cd04124 141 ADGTNVVKLFQDAIKLAV 158 (161)
T ss_pred CCCCCHHHHHHHHHHHHH
T ss_conf 838097999999999998
No 148
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=99.44 E-value=6.8e-12 Score=99.34 Aligned_cols=156 Identities=23% Similarity=0.249 Sum_probs=102.0
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHCCEEEEEEEEEEEECCCCCEEEEEEEECCCCCHHH
Q ss_conf 79998013898778899999982980544443113058677987195052327999974378843899996178730027
Q gi|254780321|r 13 NFSIVAHIDHGKSTLADRFIQHCRGLTEREMSSQVLDNMDIERERGITIKAQTVRLNYTSTDAKDYQLNLIDTPGHVDFT 92 (606)
Q Consensus 13 N~~IiaHvDhGKTTL~d~lL~~tg~i~~~~~~~~vlD~~~~EreRGITIka~~~~~~~~~~~~~~y~iNlIDTPGH~DF~ 92 (606)
-++++|..+.|||+|..|++ .+.+...-. .+ -|+....+.+ ..+++.+.++|.||+|+..|.
T Consensus 5 KivlvGd~~vGKTsli~r~~--~~~f~~~~~-~T----------ig~~~~~k~v-----~~~~~~i~l~iwDt~G~e~~~ 66 (167)
T cd01867 5 KLLLIGDSGVGKSCLLLRFS--EDSFNPSFI-ST----------IGIDFKIRTI-----ELDGKKIKLQIWDTAGQERFR 66 (167)
T ss_pred EEEEECCCCCCHHHHHHHHH--HCCCCCCCC-CC----------CCEEEEEEEE-----EECCEEEEEEEEECCCCCCHH
T ss_conf 99999999978899999996--099999868-98----------6468899999-----999999999999899970011
Q ss_pred HHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHH-H---CCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999997302689999868788655899999999-7---0996799832678875321133888775553223210001
Q gi|254780321|r 93 YEVSRSLSACEGSLLVVDATQGVEAQTLANVYQAI-D---NNHEIITVLNKADLPSADPDRVKKQIEETIGISTEDALLV 168 (606)
Q Consensus 93 ~EV~r~l~a~dgaiLvVdA~~Gvq~QT~~~~~~A~-~---~~l~~I~viNKiD~~~A~~e~v~~ei~~~~g~~~~~ii~v 168 (606)
.-....++-++++|||.|.++=---+....|..-. + .++++|+|-||+|+++.+.- ..++.+++..--.-..+.+
T Consensus 67 ~~~~~y~~~a~~~ilvfdit~~~Sf~~~~~w~~~i~~~~~~~~~~ilVgNK~Dl~~~r~v-~~~e~~~~a~~~~~~~~e~ 145 (167)
T cd01867 67 TITTAYYRGAMGIILVYDITDEKSFENIRNWMRNIEEHASEDVERMLVGNKCDMEEKRVV-SKEEGEALADEYGIKFLET 145 (167)
T ss_pred HHHHHHHHHCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCHHCCCC-CHHHHHHHHHHHCCEEEEE
T ss_conf 667998565058899556898799999999999999866999705764212450230779-9999999999809969998
Q ss_pred HHHCCCCCCHHHHHHHHHH
Q ss_conf 1100223200678776321
Q gi|254780321|r 169 SAKTGEGIPLLLERIVQQL 187 (606)
Q Consensus 169 SAktG~GV~~LLd~Iv~~i 187 (606)
|||+|.||+++++.|++.+
T Consensus 146 SAktg~nI~e~F~~l~~~i 164 (167)
T cd01867 146 SAKANINVEEAFFTLAKDI 164 (167)
T ss_pred CCCCCCCHHHHHHHHHHHH
T ss_conf 2257907899999999999
No 149
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.43 E-value=4.8e-12 Score=100.33 Aligned_cols=156 Identities=25% Similarity=0.317 Sum_probs=99.9
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHCCEEEEEEEEEEEECCCCCEEEEEEEECCCCCHHH
Q ss_conf 79998013898778899999982980544443113058677987195052327999974378843899996178730027
Q gi|254780321|r 13 NFSIVAHIDHGKSTLADRFIQHCRGLTEREMSSQVLDNMDIERERGITIKAQTVRLNYTSTDAKDYQLNLIDTPGHVDFT 92 (606)
Q Consensus 13 N~~IiaHvDhGKTTL~d~lL~~tg~i~~~~~~~~vlD~~~~EreRGITIka~~~~~~~~~~~~~~y~iNlIDTPGH~DF~ 92 (606)
-++++|....|||+|..|++ .+.+.... ..+ -|+....+ .+. .+++.+.++|.||+|+.+|.
T Consensus 2 Ki~vvG~~~vGKTsli~r~~--~~~f~~~~-~~T----------i~~~~~~~--~i~---~~~~~~~l~iwDt~G~e~~~ 63 (164)
T smart00175 2 KIILIGDSGVGKSSLLSRFT--DGKFSEQY-KST----------IGVDFKTK--TIE---VDGKRVKLQIWDTAGQERFR 63 (164)
T ss_pred EEEEECCCCCCHHHHHHHHH--HCCCCCCC-CCC----------CCEEEEEE--EEE---ECCEEEEEEEEECCCCHHHH
T ss_conf 89999989977999999994--19999986-884----------56666779--999---99999999999679944664
Q ss_pred HHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHH-H---CCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999997302689999868788655899999999-7---0996799832678875321133888775553223210001
Q gi|254780321|r 93 YEVSRSLSACEGSLLVVDATQGVEAQTLANVYQAI-D---NNHEIITVLNKADLPSADPDRVKKQIEETIGISTEDALLV 168 (606)
Q Consensus 93 ~EV~r~l~a~dgaiLvVdA~~Gvq~QT~~~~~~A~-~---~~l~~I~viNKiD~~~A~~e~v~~ei~~~~g~~~~~ii~v 168 (606)
.-....++-+|+++||.|.++----+....|.... . .+.|+++|-||+|++..+.- -.++.+++..-..-..+.+
T Consensus 64 ~l~~~~~~~~~~~ilvfdi~~~~Sf~~i~~w~~~i~~~~~~~~piilvgnK~Dl~~~r~V-~~~e~~~~a~~~~~~~~e~ 142 (164)
T smart00175 64 SITSSYYRGAVGALLVYDITNRESFENLKNWLKELREYADPNVVIMLVGNKSDLEDQRQV-SREEAEAFAEEHGLPFFET 142 (164)
T ss_pred HHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCHHHHCCC-CHHHHHHHHHHCCCEEEEE
T ss_conf 779988336653688436899899999999999999867999825511645685651879-9999999999849979998
Q ss_pred HHHCCCCCCHHHHHHHHHH
Q ss_conf 1100223200678776321
Q gi|254780321|r 169 SAKTGEGIPLLLERIVQQL 187 (606)
Q Consensus 169 SAktG~GV~~LLd~Iv~~i 187 (606)
||++|.||+++++.+++.+
T Consensus 143 SAk~~~~v~e~F~~l~~~i 161 (164)
T smart00175 143 SAKTNTNVEEAFEELAREI 161 (164)
T ss_pred CCCCCCCHHHHHHHHHHHH
T ss_conf 3166908899999999999
No 150
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.43 E-value=6.1e-12 Score=99.64 Aligned_cols=151 Identities=25% Similarity=0.331 Sum_probs=97.0
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHCCEEEEEEEEEEEECCCCCEEEEEEEECCCCCHHH
Q ss_conf 79998013898778899999982980544443113058677987195052327999974378843899996178730027
Q gi|254780321|r 13 NFSIVAHIDHGKSTLADRFIQHCRGLTEREMSSQVLDNMDIERERGITIKAQTVRLNYTSTDAKDYQLNLIDTPGHVDFT 92 (606)
Q Consensus 13 N~~IiaHvDhGKTTL~d~lL~~tg~i~~~~~~~~vlD~~~~EreRGITIka~~~~~~~~~~~~~~y~iNlIDTPGH~DF~ 92 (606)
.++++|.-..|||||..|++. +.+.... ..+ -|.... ...+. .+++.+.+++.||||+..|.
T Consensus 2 Ki~vvG~~~vGKTsli~~~~~--~~f~~~~-~~T----------ig~d~~--~~~~~---~~~~~~~l~iwDt~G~e~~~ 63 (159)
T cd00154 2 KIVLIGDSGVGKTSLLLRFVD--GKFDENY-KST----------IGVDFK--SKTIE---IDGKTVKLQIWDTAGQERFR 63 (159)
T ss_pred EEEEECCCCCCHHHHHHHHHH--CCCCCCC-CCC----------CCEEEE--EEEEE---ECCEEEEEEEEECCCCHHHH
T ss_conf 899999699689999999970--9999984-886----------664799--99999---99999999999789826577
Q ss_pred HHHHHHHHHCCEEEEEEECCCCCCHHHHHH---HHH-HHH---CCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 999999973026899998687886558999---999-997---0996799832678875321133888775553223210
Q gi|254780321|r 93 YEVSRSLSACEGSLLVVDATQGVEAQTLAN---VYQ-AID---NNHEIITVLNKADLPSADPDRVKKQIEETIGISTEDA 165 (606)
Q Consensus 93 ~EV~r~l~a~dgaiLvVdA~~Gvq~QT~~~---~~~-A~~---~~l~~I~viNKiD~~~A~~e~v~~ei~~~~g~~~~~i 165 (606)
.-....++-+|++|+|.|.++ +++..+ |+. ..+ .+.|+++|-||+|++..+. --.++.+++..--.-..
T Consensus 64 ~l~~~~~~~~d~~ilv~d~~~---~~Sf~~~~~~~~~i~~~~~~~~~iilvgnK~DL~~~~~-v~~~~~~~~a~~~~~~~ 139 (159)
T cd00154 64 SITPSYYRGAHGAILVYDITN---RESFENLDKWLKELKEYAPENIPIILVGNKIDLEDQRQ-VSTEEAQQFAKENGLLF 139 (159)
T ss_pred HHHHHHHHHCCEEEEECCCCC---HHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCHHCCC-CCHHHHHHHHHHCCCEE
T ss_conf 889999754127567244898---89999999999999986898882699997456301168-99999999999869979
Q ss_pred HHHHHHCCCCCCHHHHHHHH
Q ss_conf 00111002232006787763
Q gi|254780321|r 166 LLVSAKTGEGIPLLLERIVQ 185 (606)
Q Consensus 166 i~vSAktG~GV~~LLd~Iv~ 185 (606)
+.+||++|.||+++++.|++
T Consensus 140 ~e~SAk~~~~i~~~F~~i~~ 159 (159)
T cd00154 140 FETSAKTGENVEELFQSLAE 159 (159)
T ss_pred EEECCCCCCCHHHHHHHHHC
T ss_conf 99876888198999999869
No 151
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.43 E-value=2.8e-12 Score=101.87 Aligned_cols=151 Identities=23% Similarity=0.310 Sum_probs=90.2
Q ss_pred EECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHCCEEEEEEEEEEEECCCCCEEEEEEEECCCCCH-----
Q ss_conf 980138987788999999829805444431130586779871950523279999743788438999961787300-----
Q gi|254780321|r 16 IVAHIDHGKSTLADRFIQHCRGLTEREMSSQVLDNMDIERERGITIKAQTVRLNYTSTDAKDYQLNLIDTPGHVD----- 90 (606)
Q Consensus 16 IiaHvDhGKTTL~d~lL~~tg~i~~~~~~~~vlD~~~~EreRGITIka~~~~~~~~~~~~~~y~iNlIDTPGH~D----- 90 (606)
|||--.+|||||.-+| ||. +.. +.+ .-|-|.....-.+.| .+ ..++.|+||||-.+
T Consensus 1 ivG~PNvGKSTL~N~L---t~~--~~~----v~~------~pgTTr~~~~g~~~~--~~--~~~i~~~DtpGi~~~~~~~ 61 (176)
T cd01881 1 LVGLPNVGKSTLLNAL---TNA--KPK----VAN------YPFTTLEPNLGVVEV--PD--GARIQVADIPGLIEGASEG 61 (176)
T ss_pred CCCCCCCCHHHHHHHH---HCC--CCE----EEC------CCCCEEEEEEEEEEE--CC--CCEEEEEECCCCCCCCHHH
T ss_conf 9699988899999999---689--960----307------899676124679994--79--9669999578754573378
Q ss_pred H--HHHHHHHHHHCCEEEEEEECCCCCCHHHHH----------HHHH-------HHHCCCCEEEEECCCCCCCCCCCCHH
Q ss_conf 2--799999997302689999868788655899----------9999-------99709967998326788753211338
Q gi|254780321|r 91 F--TYEVSRSLSACEGSLLVVDATQGVEAQTLA----------NVYQ-------AIDNNHEIITVLNKADLPSADPDRVK 151 (606)
Q Consensus 91 F--~~EV~r~l~a~dgaiLvVdA~~Gvq~QT~~----------~~~~-------A~~~~l~~I~viNKiD~~~A~~e~v~ 151 (606)
- .....+.++-||..++|+||.+....+... .+.. ....+.|+++|+||+|+...+ +..
T Consensus 62 ~~~~~~~l~~~~~~d~il~vvD~~~~~~~~~~~~~~~~~~i~~el~~~~~~~~~~~~~~kp~i~v~NK~Dl~~~~--~~~ 139 (176)
T cd01881 62 RGLGNQFLAHIRRADAILHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAE--ELE 139 (176)
T ss_pred HHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHCCCCEEEEEECEECCCHH--HHH
T ss_conf 789999998741088999999898765545445899999999999971156655543269719999686034700--315
Q ss_pred HHHHHHH-HHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q ss_conf 8877555-32232100011100223200678776321
Q gi|254780321|r 152 KQIEETI-GISTEDALLVSAKTGEGIPLLLERIVQQL 187 (606)
Q Consensus 152 ~ei~~~~-g~~~~~ii~vSAktG~GV~~LLd~Iv~~i 187 (606)
..+...+ .....+++++||++|.|+++|+++|.+.+
T Consensus 140 ~~~~~~~~~~~~~~ii~iSA~~~~gi~~L~~~i~~~L 176 (176)
T cd01881 140 EELVRELALEEGAEVVPISAKTEEGLDELIRAIYELL 176 (176)
T ss_pred HHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHC
T ss_conf 9999999746899589997778879999999999659
No 152
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=99.43 E-value=1.2e-11 Score=97.75 Aligned_cols=157 Identities=14% Similarity=0.217 Sum_probs=102.0
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHCCEEEEEEEEEEEECCCCCEEEEEEEECCCCCHHHH
Q ss_conf 99980138987788999999829805444431130586779871950523279999743788438999961787300279
Q gi|254780321|r 14 FSIVAHIDHGKSTLADRFIQHCRGLTEREMSSQVLDNMDIERERGITIKAQTVRLNYTSTDAKDYQLNLIDTPGHVDFTY 93 (606)
Q Consensus 14 ~~IiaHvDhGKTTL~d~lL~~tg~i~~~~~~~~vlD~~~~EreRGITIka~~~~~~~~~~~~~~y~iNlIDTPGH~DF~~ 93 (606)
++++|....|||+|.-|++ .+.+.+.... .-|+....+.+. .+++.+.++|.||+|...|..
T Consensus 3 ivlvGd~~VGKTsLi~rf~--~~~F~~~y~~-----------Tig~d~~~k~i~-----v~~~~v~l~iwDtaGqe~f~~ 64 (182)
T cd04128 3 IGLLGDAQIGKTSLMVKYV--EGEFDEDYIQ-----------TLGVNFMEKTIS-----IRGTEITFSIWDLGGQREFIN 64 (182)
T ss_pred EEEECCCCCCHHHHHHHHH--CCCCCCCCCC-----------CCEEEEEEEEEE-----ECCEEEEEEEEECCCCHHHHH
T ss_conf 9999999989899999995--3999999888-----------733898999999-----999999999986776487899
Q ss_pred HHHHHHHHCCEEEEEEECCCCCCHHHHHHHHH-HHHC--CCCEEEEECCCCCCCC----CCCCHHHHHHHHHHHHHHHHH
Q ss_conf 99999973026899998687886558999999-9970--9967998326788753----211338887755532232100
Q gi|254780321|r 94 EVSRSLSACEGSLLVVDATQGVEAQTLANVYQ-AIDN--NHEIITVLNKADLPSA----DPDRVKKQIEETIGISTEDAL 166 (606)
Q Consensus 94 EV~r~l~a~dgaiLvVdA~~Gvq~QT~~~~~~-A~~~--~l~~I~viNKiD~~~A----~~e~v~~ei~~~~g~~~~~ii 166 (606)
-+...++-+++++||.|.++=---+....|+. .... ...+|+|-||+|+..- +-+.+.++-+++..--.-..+
T Consensus 65 ~~~~y~~~a~~~ilvfDit~~~Sf~~~~~w~~~i~~~~~~~~~ilVGnK~DL~~~~~~~~~~~~~~~~~~~a~~~~~~f~ 144 (182)
T cd04128 65 MLPLVCNDAVAILFMFDLTRKSTLNSIKEWYRQARGFNKTAIPILVGTKYDLFADLPPEEQEEITKQARKYAKAMKAPLI 144 (182)
T ss_pred HHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCHHEEHHHHHHHHHHHHCCCEEE
T ss_conf 99998647878999997899899998999999999768999889999866355655622310248999999998499899
Q ss_pred HHHHHCCCCCCHHHHHHHHHHH
Q ss_conf 0111002232006787763210
Q gi|254780321|r 167 LVSAKTGEGIPLLLERIVQQLP 188 (606)
Q Consensus 167 ~vSAktG~GV~~LLd~Iv~~iP 188 (606)
.+|||+|.||+++++.|+..+=
T Consensus 145 etSAk~~~nV~e~F~~i~~~i~ 166 (182)
T cd04128 145 FCSTSHSINVQKIFKIVLAKAF 166 (182)
T ss_pred EEECCCCCCHHHHHHHHHHHHH
T ss_conf 9947999798999999999996
No 153
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.43 E-value=3.6e-12 Score=101.15 Aligned_cols=156 Identities=22% Similarity=0.281 Sum_probs=101.8
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHCCEEEEEEEEEEEECCCCCEEEEEEEECCCCCHHH
Q ss_conf 79998013898778899999982980544443113058677987195052327999974378843899996178730027
Q gi|254780321|r 13 NFSIVAHIDHGKSTLADRFIQHCRGLTEREMSSQVLDNMDIERERGITIKAQTVRLNYTSTDAKDYQLNLIDTPGHVDFT 92 (606)
Q Consensus 13 N~~IiaHvDhGKTTL~d~lL~~tg~i~~~~~~~~vlD~~~~EreRGITIka~~~~~~~~~~~~~~y~iNlIDTPGH~DF~ 92 (606)
.++++|..+.|||||..|++ .+.+.+... .++ |.+...+ .+ ..+++.+.+++.||||+.+|.
T Consensus 2 Ki~vvG~~~vGKTsli~r~~--~~~f~~~~~-~ti----------~~~~~~k--~i---~~~~~~~~l~iwDt~G~~~~~ 63 (162)
T cd04123 2 KVVLLGEGRVGKTSLVLRYV--ENKFNEKHE-STT----------QASFFQK--TV---NIGGKRIDLAIWDTAGQERYH 63 (162)
T ss_pred EEEEECCCCCCHHHHHHHHH--HCCCCCCCC-CCC----------EEEEEEE--EE---EECCEEEEEEEEECCCCCCCC
T ss_conf 89999999967999999998--398998767-752----------6479999--99---999999999999589973035
Q ss_pred HHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHH----HCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999997302689999868788655899999999----70996799832678875321133888775553223210001
Q gi|254780321|r 93 YEVSRSLSACEGSLLVVDATQGVEAQTLANVYQAI----DNNHEIITVLNKADLPSADPDRVKKQIEETIGISTEDALLV 168 (606)
Q Consensus 93 ~EV~r~l~a~dgaiLvVdA~~Gvq~QT~~~~~~A~----~~~l~~I~viNKiD~~~A~~e~v~~ei~~~~g~~~~~ii~v 168 (606)
.-....++-+|+.+||.|.++=---+....|+.-+ ....++|+|-||+|++..+.- -.+|..++..--.-..+.+
T Consensus 64 ~~~~~~~~~a~~~ilv~d~t~~~Sf~~i~~~~~~i~~~~~~~~~iilvgnK~Dl~~~r~v-~~~e~~~~a~~~~~~y~e~ 142 (162)
T cd04123 64 ALGPIYYRDADGAILVYDITDADSFQKVKKWIKELKQMRGNNISLVIVGNKIDLERQRVV-SKSEAEEYAKSVGAKHFET 142 (162)
T ss_pred CCCHHHEECCCEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCHHHCCC-CHHHHHHHHHHCCCEEEEE
T ss_conf 563133011445799963899899999999999999876999746866332132540888-9999999999829989998
Q ss_pred HHHCCCCCCHHHHHHHHHH
Q ss_conf 1100223200678776321
Q gi|254780321|r 169 SAKTGEGIPLLLERIVQQL 187 (606)
Q Consensus 169 SAktG~GV~~LLd~Iv~~i 187 (606)
||++|.||+++++.|+..+
T Consensus 143 Sak~g~nV~e~F~~l~~~i 161 (162)
T cd04123 143 SAKTGKGIEELFLSLAKRM 161 (162)
T ss_pred ECCCCCCHHHHHHHHHHHH
T ss_conf 1278819899999999986
No 154
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.43 E-value=8.7e-12 Score=98.61 Aligned_cols=154 Identities=22% Similarity=0.240 Sum_probs=100.0
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHCCEEEEEEEEEEEECCCCCEEEEEEEECCCCCHHHH
Q ss_conf 99980138987788999999829805444431130586779871950523279999743788438999961787300279
Q gi|254780321|r 14 FSIVAHIDHGKSTLADRFIQHCRGLTEREMSSQVLDNMDIERERGITIKAQTVRLNYTSTDAKDYQLNLIDTPGHVDFTY 93 (606)
Q Consensus 14 ~~IiaHvDhGKTTL~d~lL~~tg~i~~~~~~~~vlD~~~~EreRGITIka~~~~~~~~~~~~~~y~iNlIDTPGH~DF~~ 93 (606)
++++|-..-|||+|.-|++ .+.+.+.- ..++ |-.. .+ .+ ..+++.+.+++.||+|+.+|..
T Consensus 3 vvlvGd~~VGKTsli~r~~--~~~F~~~y-~pTi----------~~~~-~~--~~---~~~~~~v~l~iwDtaG~e~~~~ 63 (164)
T cd04139 3 VIVVGAGGVGKSALTLQFM--YDEFVEDY-EPTK----------ADSY-RK--KV---VLDGEDVQLNILDTAGQEDYAA 63 (164)
T ss_pred EEEECCCCCCHHHHHHHHH--HCCCCCCC-CCCC----------CCEE-EE--EE---EECCEEEEEEEEECCCCHHHHH
T ss_conf 9999999988999999997--19898774-8854----------4168-99--99---9999999999998988662488
Q ss_pred HHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHH-HH----CCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999730268999986878865589999999-97----0996799832678875321133888775553223210001
Q gi|254780321|r 94 EVSRSLSACEGSLLVVDATQGVEAQTLANVYQA-ID----NNHEIITVLNKADLPSADPDRVKKQIEETIGISTEDALLV 168 (606)
Q Consensus 94 EV~r~l~a~dgaiLvVdA~~Gvq~QT~~~~~~A-~~----~~l~~I~viNKiD~~~A~~e~v~~ei~~~~g~~~~~ii~v 168 (606)
-....++-+||+|||.|.+.----+....|+.- .. ..+|+|+|-||+|+.+.+. --.+|.+++..--.-..+.+
T Consensus 64 l~~~~~~~a~~~ilvydvt~~~Sf~~~~~~~~~~~~~~~~~~~piilVgNK~DL~~~r~-v~~~e~~~~a~~~~~~~~E~ 142 (164)
T cd04139 64 IRDNYHRSGEGFLLVFSITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDLEDKRQ-VSSEEAANLARQWGVPYVET 142 (164)
T ss_pred HHHHHHHHCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEHHHHHCCC-CCHHHHHHHHHHCCCEEEEE
T ss_conf 99998863768899997797788999999999999860878863698733032334177-89999999999839989998
Q ss_pred HHHCCCCCCHHHHHHHHHH
Q ss_conf 1100223200678776321
Q gi|254780321|r 169 SAKTGEGIPLLLERIVQQL 187 (606)
Q Consensus 169 SAktG~GV~~LLd~Iv~~i 187 (606)
|||+|.||+++++.+++.+
T Consensus 143 SAk~g~nV~~~F~~l~~~i 161 (164)
T cd04139 143 SAKTRQNVEKAFYDLVREI 161 (164)
T ss_pred CCCCCCCHHHHHHHHHHHH
T ss_conf 2687908899999999999
No 155
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.43 E-value=1.2e-11 Score=97.66 Aligned_cols=157 Identities=17% Similarity=0.185 Sum_probs=101.7
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHCCEEEEEEEEEEEECCCCCEEEEEEEECCCCCHHHH
Q ss_conf 99980138987788999999829805444431130586779871950523279999743788438999961787300279
Q gi|254780321|r 14 FSIVAHIDHGKSTLADRFIQHCRGLTEREMSSQVLDNMDIERERGITIKAQTVRLNYTSTDAKDYQLNLIDTPGHVDFTY 93 (606)
Q Consensus 14 ~~IiaHvDhGKTTL~d~lL~~tg~i~~~~~~~~vlD~~~~EreRGITIka~~~~~~~~~~~~~~y~iNlIDTPGH~DF~~ 93 (606)
++++|..+-|||+|.-|++ .|.+.+.. .+..+ -+|+ ... .+++.+.++|.||+|..+|..
T Consensus 3 iv~vGd~~VGKTsli~r~~--~~~F~~~~--~~t~~--------~~~~-----~~~---~~~~~v~l~i~DtaG~e~~~~ 62 (166)
T cd01893 3 IVLIGDEGVGKSSLIMSLV--SEEFPENV--PRVLP--------EITI-----PAD---VTPERVPTTIVDTSSRPQDRA 62 (166)
T ss_pred EEEECCCCCCHHHHHHHHH--HCCCCCCC--CCCCC--------CEEE-----EEE---ECCEEEEEEEEECCCCCCCCH
T ss_conf 9999999989999999998--49788877--76345--------6899-----999---889099999998998723024
Q ss_pred HHHHHHHHCCEEEEEEECCCCCCHHHHHHHHH----HHHCCCCEEEEECCCCCCCCCCCCHHHHH-HHHH-HHH-HHHHH
Q ss_conf 99999973026899998687886558999999----99709967998326788753211338887-7555-322-32100
Q gi|254780321|r 94 EVSRSLSACEGSLLVVDATQGVEAQTLANVYQ----AIDNNHEIITVLNKADLPSADPDRVKKQI-EETI-GIS-TEDAL 166 (606)
Q Consensus 94 EV~r~l~a~dgaiLvVdA~~Gvq~QT~~~~~~----A~~~~l~~I~viNKiD~~~A~~e~v~~ei-~~~~-g~~-~~~ii 166 (606)
-....++-+++++||-|.+.---=+-...+|. ....+.|+|+|-||+|+.+.+.....++- .... .+. ....+
T Consensus 63 ~~~~~~~~a~~~ilvydit~~~Sf~~i~~~w~~~i~~~~~~~piilvGNK~DL~~~r~~~~~e~~~~~~~~~~~~~~~~~ 142 (166)
T cd01893 63 NLAAEIRKANVICLVYSVDRPSTLERIRTKWLPLIRRLGVKVPIILVGNKSDLRDGSSQAGLEEEMLPIMNEFREIETCV 142 (166)
T ss_pred HHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCEEE
T ss_conf 57987368988999970898778999999999999986899968999988654002503358899999999730748899
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHCC
Q ss_conf 011100223200678776321000
Q gi|254780321|r 167 LVSAKTGEGIPLLLERIVQQLPSP 190 (606)
Q Consensus 167 ~vSAktG~GV~~LLd~Iv~~iP~P 190 (606)
.+|||+|.||+++++.+...+=.|
T Consensus 143 EtSAktg~nV~e~F~~~~k~~l~p 166 (166)
T cd01893 143 ECSAKTLINVSEVFYYAQKAVLHP 166 (166)
T ss_pred EECCCCCCCHHHHHHHHHHHHHCC
T ss_conf 906588919899999999998098
No 156
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=99.42 E-value=4.6e-12 Score=100.46 Aligned_cols=157 Identities=17% Similarity=0.244 Sum_probs=101.5
Q ss_pred CEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHCCEEEEEEEEEEEECCCCCEEEEEEEECCCCCH
Q ss_conf 31799980138987788999999829805444431130586779871950523279999743788438999961787300
Q gi|254780321|r 11 IRNFSIVAHIDHGKSTLADRFIQHCRGLTEREMSSQVLDNMDIERERGITIKAQTVRLNYTSTDAKDYQLNLIDTPGHVD 90 (606)
Q Consensus 11 IRN~~IiaHvDhGKTTL~d~lL~~tg~i~~~~~~~~vlD~~~~EreRGITIka~~~~~~~~~~~~~~y~iNlIDTPGH~D 90 (606)
+=-++++|...-|||+|.-|++ .+.+..... .++ |+....+.+. .+++.+.++|.||+|+.+
T Consensus 5 ~~KivvlGd~~VGKTsli~r~~--~~~f~~~~~-~Ti----------g~~~~~k~i~-----~~~~~v~l~iwDtaG~e~ 66 (170)
T cd04116 5 LLKVILLGDGGVGKSSLMNRYV--TNKFDTQLF-HTI----------GVEFLNKDLE-----VDGHFVTLQIWDTAGQER 66 (170)
T ss_pred EEEEEEECCCCCCHHHHHHHHH--HCCCCCCCC-CCC----------EEEEEEEEEE-----ECCEEEEEEEEECCCCCC
T ss_conf 8999999999978999999997--398999888-876----------0798999999-----999999999998999724
Q ss_pred HHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHH--------HCCCCEEEEECCCCCCCCCCCCHHHHHHHHHH-HH
Q ss_conf 2799999997302689999868788655899999999--------70996799832678875321133888775553-22
Q gi|254780321|r 91 FTYEVSRSLSACEGSLLVVDATQGVEAQTLANVYQAI--------DNNHEIITVLNKADLPSADPDRVKKQIEETIG-IS 161 (606)
Q Consensus 91 F~~EV~r~l~a~dgaiLvVdA~~Gvq~QT~~~~~~A~--------~~~l~~I~viNKiD~~~A~~e~v~~ei~~~~g-~~ 161 (606)
|..-....++-+|++|||.|.++=--=+....|+.-+ ...+|+|+|-||+|++...+ ..++.+.+.. ..
T Consensus 67 ~~~l~~~~~~~a~~~ilvydit~~~Sf~~~~~w~~~~~~~~~~~~~~~~piilvgnK~Dl~~r~v--~~~e~~~~a~~~~ 144 (170)
T cd04116 67 FRSLRTPFYRGSDCCLLTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIPERQV--STEEAQAWCRENG 144 (170)
T ss_pred CCCCHHHHEECCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCHHHHCCC--CHHHHHHHHHHCC
T ss_conf 35241766004773399997888799999999999999971445788840999961111303788--9999999999859
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHH
Q ss_conf 32100011100223200678776321
Q gi|254780321|r 162 TEDALLVSAKTGEGIPLLLERIVQQL 187 (606)
Q Consensus 162 ~~~ii~vSAktG~GV~~LLd~Iv~~i 187 (606)
....+.+|||+|.||+++++.++..+
T Consensus 145 ~~~~~E~SAk~g~nV~~~F~~l~~~i 170 (170)
T cd04116 145 DYPYFETSAKDATNVAAAFEEAVRRV 170 (170)
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHCC
T ss_conf 97899988888818899999999539
No 157
>PTZ00132 GTP-binding nuclear protein; Provisional
Probab=99.42 E-value=5.3e-12 Score=100.07 Aligned_cols=154 Identities=18% Similarity=0.233 Sum_probs=101.5
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHCCEEEEEEEEEEEECCCCCEEEEEEEECCCCCHHH
Q ss_conf 79998013898778899999982980544443113058677987195052327999974378843899996178730027
Q gi|254780321|r 13 NFSIVAHIDHGKSTLADRFIQHCRGLTEREMSSQVLDNMDIERERGITIKAQTVRLNYTSTDAKDYQLNLIDTPGHVDFT 92 (606)
Q Consensus 13 N~~IiaHvDhGKTTL~d~lL~~tg~i~~~~~~~~vlD~~~~EreRGITIka~~~~~~~~~~~~~~y~iNlIDTPGH~DF~ 92 (606)
-+.++|-..-|||+|+-|++ .|.+.+... .++ |+..+. ..+ ..+++.+.++|.||+|+..|.
T Consensus 8 KIvllGd~~VGKTsLi~r~~--~~~F~~~y~-pTi----------g~d~~~--~~~---~~~~~~i~l~IwDTaGqe~f~ 69 (209)
T PTZ00132 8 KLILVGDGGVGKTTFVKRHL--TGEFEKKYI-ATL----------GVEVHP--LKF---YTNRGKICFNVWDTAGQEKFG 69 (209)
T ss_pred EEEEECCCCCCHHHHHHHHH--HCCCCCCCC-CCC----------CEEEEE--EEE---EECCEEEEEEEEECCCCCCCC
T ss_conf 99999999967899999997--199699877-760----------279899--999---999999999999899974455
Q ss_pred HHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHH---CCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999973026899998687886558999999997---09967998326788753211338887755532232100011
Q gi|254780321|r 93 YEVSRSLSACEGSLLVVDATQGVEAQTLANVYQAID---NNHEIITVLNKADLPSADPDRVKKQIEETIGISTEDALLVS 169 (606)
Q Consensus 93 ~EV~r~l~a~dgaiLvVdA~~Gvq~QT~~~~~~A~~---~~l~~I~viNKiD~~~A~~e~v~~ei~~~~g~~~~~ii~vS 169 (606)
.-.....+-++|+|||.|.+.=---+-...|+..+. .++++|+|=||+|+.+.. |..+-.++-.-..-..+-+|
T Consensus 70 sl~~~yyr~a~~~ilVfDit~~~SF~~l~~W~~ei~~~~~~ipivLVGNK~DL~~r~---V~~~~~~~a~~~~~~f~EtS 146 (209)
T PTZ00132 70 GLRDGYYIKGQCAIIMFDVTSRITYKNVPNWHRDITRVCENIPIVLVGNKVDVKDRQ---VKAKQITFHRKKNLQYYDIS 146 (209)
T ss_pred CCCCHHHCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCC---CCHHHHHHHHHCCCEEEEEE
T ss_conf 665144248988999843788789999999999999868998789997623224135---57999999998799899972
Q ss_pred HHCCCCCCHHHHHHHHHH
Q ss_conf 100223200678776321
Q gi|254780321|r 170 AKTGEGIPLLLERIVQQL 187 (606)
Q Consensus 170 AktG~GV~~LLd~Iv~~i 187 (606)
||+|.||+++++.+...+
T Consensus 147 AKtg~NV~e~F~~Lar~i 164 (209)
T PTZ00132 147 AKSNYNFEKPFLWLARRL 164 (209)
T ss_pred CCCCCCHHHHHHHHHHHH
T ss_conf 689939799999999998
No 158
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.42 E-value=9.6e-12 Score=98.33 Aligned_cols=156 Identities=20% Similarity=0.270 Sum_probs=99.8
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHCCEEEEEEEEEEEECCCCCEEEEEEEECCCCCHHH
Q ss_conf 79998013898778899999982980544443113058677987195052327999974378843899996178730027
Q gi|254780321|r 13 NFSIVAHIDHGKSTLADRFIQHCRGLTEREMSSQVLDNMDIERERGITIKAQTVRLNYTSTDAKDYQLNLIDTPGHVDFT 92 (606)
Q Consensus 13 N~~IiaHvDhGKTTL~d~lL~~tg~i~~~~~~~~vlD~~~~EreRGITIka~~~~~~~~~~~~~~y~iNlIDTPGH~DF~ 92 (606)
-++++|....|||+|..|++ .|.+.... ..+ -|+....+ .+. .+++.++++|.||+|...|.
T Consensus 5 Kiv~iGd~~VGKTsli~r~~--~~~f~~~~-~~T----------ig~~~~~k--~i~---~~~~~~~l~iwDtaG~e~~~ 66 (165)
T cd01868 5 KIVLIGDSGVGKSNLLSRFT--RNEFNLDS-KST----------IGVEFATR--SIQ---IDGKTIKAQIWDTAGQERYR 66 (165)
T ss_pred EEEEECCCCCCHHHHHHHHH--HCCCCCCC-CCC----------CCEEEEEE--EEE---ECCEEEEEEEEECCCCHHHH
T ss_conf 99999999978999999997--29899988-987----------44787899--999---99999999999899972126
Q ss_pred HHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHH-H---CCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999997302689999868788655899999999-7---0996799832678875321133888775553223210001
Q gi|254780321|r 93 YEVSRSLSACEGSLLVVDATQGVEAQTLANVYQAI-D---NNHEIITVLNKADLPSADPDRVKKQIEETIGISTEDALLV 168 (606)
Q Consensus 93 ~EV~r~l~a~dgaiLvVdA~~Gvq~QT~~~~~~A~-~---~~l~~I~viNKiD~~~A~~e~v~~ei~~~~g~~~~~ii~v 168 (606)
.-....++-++++++|.|.++----+-...|..-+ + .++|+++|-||+|+++.+. --.+|..++..-..-..+.+
T Consensus 67 ~~~~~~~~~a~~~ilvydit~~~Sf~~i~~w~~~i~~~~~~~~~iilVgnK~DL~~~r~-Vs~~e~~~~a~~~~~~~~E~ 145 (165)
T cd01868 67 AITSAYYRGAVGALLVYDITKKQTFENVERWLKELRDHADSNIVIMLVGNKSDLRHLRA-VPTEEAKAFAEKNGLSFIET 145 (165)
T ss_pred HHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHCC-CCHHHHHHHHHHCCCEEEEE
T ss_conf 78998733205148986269889999999999999985557735987023478688578-88999999999859979996
Q ss_pred HHHCCCCCCHHHHHHHHHH
Q ss_conf 1100223200678776321
Q gi|254780321|r 169 SAKTGEGIPLLLERIVQQL 187 (606)
Q Consensus 169 SAktG~GV~~LLd~Iv~~i 187 (606)
|||+|.||+++++.|++.+
T Consensus 146 SAk~g~nV~e~F~~l~~~i 164 (165)
T cd01868 146 SALDGTNVEEAFKQLLTEI 164 (165)
T ss_pred CCCCCCCHHHHHHHHHHHH
T ss_conf 7888929899999999986
No 159
>KOG0463 consensus
Probab=99.42 E-value=5.3e-13 Score=106.75 Aligned_cols=269 Identities=20% Similarity=0.276 Sum_probs=168.3
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCC-CCCCCEEECCCHHHHHHCCEE-------------------EEEEEEEEEEC
Q ss_conf 7999801389877889999998298054-444311305867798719505-------------------23279999743
Q gi|254780321|r 13 NFSIVAHIDHGKSTLADRFIQHCRGLTE-REMSSQVLDNMDIERERGITI-------------------KAQTVRLNYTS 72 (606)
Q Consensus 13 N~~IiaHvDhGKTTL~d~lL~~tg~i~~-~~~~~~vlD~~~~EreRGITI-------------------ka~~~~~~~~~ 72 (606)
-+|++|.||+|||||..-|- -|.++. |+..-|-|=...-|-|-|-|- .++.-.+.|..
T Consensus 135 RVAVVGNVDAGKSTLLGVLT--HgeLDnGRG~ARqkLFRHKHEiESGRTSSVGNDILGFD~~GNvVNKPD~Hg~~LdWvk 212 (641)
T KOG0463 135 RVAVVGNVDAGKSTLLGVLT--HGELDNGRGAARQKLFRHKHEIESGRTSSVGNDILGFDVHGNVVNKPDPHGHNLDWVK 212 (641)
T ss_pred EEEEEECCCCCCCEEEEEEE--ECCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCEE
T ss_conf 98997122477221676653--0443467227788776522310367544556620200254642158898888643134
Q ss_pred C-CCCEEEEEEEECCCCCHHHHHHHHHH--HHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCC-
Q ss_conf 7-88438999961787300279999999--7302689999868788655899999999709967998326788753211-
Q gi|254780321|r 73 T-DAKDYQLNLIDTPGHVDFTYEVSRSL--SACEGSLLVVDATQGVEAQTLANVYQAIDNNHEIITVLNKADLPSADPD- 148 (606)
Q Consensus 73 ~-~~~~y~iNlIDTPGH~DF~~EV~r~l--~a~dgaiLvVdA~~Gvq~QT~~~~~~A~~~~l~~I~viNKiD~~~A~~e- 148 (606)
. +.-...|.|||--||.-+.--..=.+ .+-|-.+|.|-|..|+-..|.+|+-+|+...+|+.+|+.|||..-|++-
T Consensus 213 Ice~saKviTFIDLAGHEkYLKTTvFGMTGH~PDf~MLMiGaNaGIiGmTKEHLgLALaL~VPVfvVVTKIDMCPANiLq 292 (641)
T KOG0463 213 ICEDSAKVITFIDLAGHEKYLKTTVFGMTGHMPDFTMLMIGANAGIIGMTKEHLGLALALHVPVFVVVTKIDMCPANILQ 292 (641)
T ss_pred ECCCCCEEEEEEECCCHHHHHHEEEECCCCCCCCCEEEEECCCCCCEECCHHHHHHHHHHCCCEEEEEEEECCCCHHHHH
T ss_conf 31364226898861541552311441033678872589851666511144776545564268579999850558178999
Q ss_pred CHHHHHHHHH---H--------------------HHHH---HHHHHHHHCCCCCCHHHHHHHHHHHCCCCHHHHHCCCCC
Q ss_conf 3388877555---3--------------------2232---100011100223200678776321000111122012331
Q gi|254780321|r 149 RVKKQIEETI---G--------------------ISTE---DALLVSAKTGEGIPLLLERIVQQLPSPTSPEGANAPLKA 202 (606)
Q Consensus 149 ~v~~ei~~~~---g--------------------~~~~---~ii~vSAktG~GV~~LLd~Iv~~iP~P~~~~~~~~Pl~a 202 (606)
+...-+..++ | +..+ .|+.+|-.+|.+.+ ||....+.+|.- -..+.+.|--.
T Consensus 293 EtmKll~rllkS~gcrK~PvlVrs~DDVv~~A~NF~Ser~CPIFQvSNVtG~NL~-LLkmFLNlls~R-~~~~E~~PAeF 370 (641)
T KOG0463 293 ETMKLLTRLLKSPGCRKLPVLVRSMDDVVHAAVNFPSERVCPIFQVSNVTGTNLP-LLKMFLNLLSLR-RQLNENDPAEF 370 (641)
T ss_pred HHHHHHHHHHCCCCCCCCCEEEECCCCEEEEECCCCCCCCCCEEEECCCCCCCHH-HHHHHHHHCCCC-CCCCCCCCCCE
T ss_conf 9999999986287765075788515644786135862123540786156677838-999998643744-56665797303
Q ss_pred CCCCEEECCCCCEEEEEEECCCCCCCCCEEEEECC-CCCCCCCCCCCCCCCEEEEHHCCCCCHHHHHHCCCCC--CCCCC
Q ss_conf 01210114757259999816987355845887335-5642101222335541240101247123322011002--44445
Q gi|254780321|r 203 LLIDSWYNSYLGVMVLVRIINGQLTKGQSIRLMGT-NAKYQVERIGILTPKMIDIEALYPGEIGVMIASIKEV--SHTRV 279 (606)
Q Consensus 203 lVfds~~D~~~G~I~~~RV~sG~lk~Gd~I~~~~~-g~~~~v~~ig~~~~~~~~v~~l~aGdVG~ii~gik~l--~~~~v 279 (606)
.|-|.++-|.+|.|+.+...+|+++-+|.+.+-.. ...+-.--+...+-++.++..+.+|+-. -..+|++ .+++-
T Consensus 371 QIDD~Y~VpGVGTvvSGT~L~GtIrLND~LlLGPd~~G~F~pI~iKSIHRKRMpV~~VrcGQtA--SFALKKIkr~~vRK 448 (641)
T KOG0463 371 QIDDIYWVPGVGTVVSGTLLSGTIRLNDILLLGPDSNGDFMPIPIKSIHRKRMPVGIVRCGQTA--SFALKKIKRKDVRK 448 (641)
T ss_pred EECCEEECCCCCEEEECCEEEEEEEECCEEEECCCCCCCEEEEEHHHHHHCCCCCEEEECCCHH--HHHHHHCCHHHHHC
T ss_conf 5222485178522764225521577522788667888876453456645403661487526404--36766354666536
Q ss_pred CCEECCCC
Q ss_conf 42000466
Q gi|254780321|r 280 GDTITDDS 287 (606)
Q Consensus 280 GDTl~~~~ 287 (606)
|-.+.+++
T Consensus 449 GMVmVsp~ 456 (641)
T KOG0463 449 GMVMVSPK 456 (641)
T ss_pred CEEEECCC
T ss_conf 41886687
No 160
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=99.41 E-value=1.2e-11 Score=97.64 Aligned_cols=150 Identities=23% Similarity=0.253 Sum_probs=99.3
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHCCEEEE-EEEEEEEECCCCCEEEEEEEECCCCCHHH
Q ss_conf 99980138987788999999829805444431130586779871950523-27999974378843899996178730027
Q gi|254780321|r 14 FSIVAHIDHGKSTLADRFIQHCRGLTEREMSSQVLDNMDIERERGITIKA-QTVRLNYTSTDAKDYQLNLIDTPGHVDFT 92 (606)
Q Consensus 14 ~~IiaHvDhGKTTL~d~lL~~tg~i~~~~~~~~vlD~~~~EreRGITIka-~~~~~~~~~~~~~~y~iNlIDTPGH~DF~ 92 (606)
++++|....|||+|.-|++ +|.+.+.- . -||.. ..-.+ ..+++.+.++|.||+|+.+|.
T Consensus 3 iv~vGd~~vGKTsli~r~~--~~~f~~~y-~--------------~Ti~~~~~k~i---~~~~~~~~l~iwDt~G~e~~~ 62 (164)
T smart00173 3 LVVLGSGGVGKSALTIQFV--QGHFVDDY-D--------------PTIEDSYRKQI---EIDGEVCLLDILDTAGQEEFS 62 (164)
T ss_pred EEEECCCCCCHHHHHHHHH--HCCCCCCC-C--------------CCEEEEEEEEE---EECCEEEEEEEEECCCCCCHH
T ss_conf 9999999978999999997--29799877-8--------------81367899999---999999999999899971035
Q ss_pred HHHHHHHHHCCEEEEEEECCCCCCHHHH---HHHHHHH-H----CCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 9999999730268999986878865589---9999999-7----099679983267887532113388877555322321
Q gi|254780321|r 93 YEVSRSLSACEGSLLVVDATQGVEAQTL---ANVYQAI-D----NNHEIITVLNKADLPSADPDRVKKQIEETIGISTED 164 (606)
Q Consensus 93 ~EV~r~l~a~dgaiLvVdA~~Gvq~QT~---~~~~~A~-~----~~l~~I~viNKiD~~~A~~e~v~~ei~~~~g~~~~~ 164 (606)
.-....++-+|++|||.|.++ .+|. ..|+.-+ + .++|+|+|-||+|+++.+.- -.+|.+++..--.-.
T Consensus 63 ~~~~~~~~~a~~~ilvydi~~---~~Sf~~~~~~~~~i~~~~~~~~~piilvgnK~DL~~~r~V-~~~e~~~~a~~~~~~ 138 (164)
T smart00173 63 AMRDQYMRTGEGFLLVYSITD---RQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLESERVV-STEEGKELARQWGCP 138 (164)
T ss_pred HHHHHHCCCCCEEEEEEECCC---HHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCHHCCCC-CHHHHHHHHHHCCCE
T ss_conf 677775379877999830798---8999999999999998618888866877753463011789-999999999983998
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHH
Q ss_conf 00011100223200678776321
Q gi|254780321|r 165 ALLVSAKTGEGIPLLLERIVQQL 187 (606)
Q Consensus 165 ii~vSAktG~GV~~LLd~Iv~~i 187 (606)
.+.+||++|.||+++++.++..+
T Consensus 139 ~~E~SAk~g~nV~~~F~~l~~~i 161 (164)
T smart00173 139 FLETSAKERVNVDEAFYDLVREI 161 (164)
T ss_pred EEEECCCCCCCHHHHHHHHHHHH
T ss_conf 99985898817899999999999
No 161
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=99.41 E-value=1.1e-11 Score=98.04 Aligned_cols=156 Identities=24% Similarity=0.255 Sum_probs=101.1
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHCCEEEEEEEEEEEECCCCCEEEEEEEECCCCCHHH
Q ss_conf 79998013898778899999982980544443113058677987195052327999974378843899996178730027
Q gi|254780321|r 13 NFSIVAHIDHGKSTLADRFIQHCRGLTEREMSSQVLDNMDIERERGITIKAQTVRLNYTSTDAKDYQLNLIDTPGHVDFT 92 (606)
Q Consensus 13 N~~IiaHvDhGKTTL~d~lL~~tg~i~~~~~~~~vlD~~~~EreRGITIka~~~~~~~~~~~~~~y~iNlIDTPGH~DF~ 92 (606)
-++++|..+.|||+|.-|++ .+.+...-. .+ =|+....+.+. .+++.+.+++.||+|+..|.
T Consensus 4 Kiv~vGd~~vGKTsli~r~~--~~~f~~~y~-~T----------ig~~~~~~~i~-----~~~~~~~l~iwDtaG~e~~~ 65 (166)
T cd01869 4 KLLLIGDSGVGKSCLLLRFA--DDTYTESYI-ST----------IGVDFKIRTIE-----LDGKTIKLQIWDTAGQERFR 65 (166)
T ss_pred EEEEECCCCCCHHHHHHHHH--CCCCCCCCC-CC----------CCEEEEEEEEE-----ECCEEEEEEEEECCCCCCCC
T ss_conf 99999999978999999994--399998747-85----------44048999999-----99999999999899982346
Q ss_pred HHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHH-H---CCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999997302689999868788655899999999-7---0996799832678875321133888775553223210001
Q gi|254780321|r 93 YEVSRSLSACEGSLLVVDATQGVEAQTLANVYQAI-D---NNHEIITVLNKADLPSADPDRVKKQIEETIGISTEDALLV 168 (606)
Q Consensus 93 ~EV~r~l~a~dgaiLvVdA~~Gvq~QT~~~~~~A~-~---~~l~~I~viNKiD~~~A~~e~v~~ei~~~~g~~~~~ii~v 168 (606)
.-....++-+|++|||.|.++=---+....|..-. . .+.++|+|-||+|+++.+.- -.++.+++..--.-..+.+
T Consensus 66 ~~~~~~~~~a~~~ilvfdit~~~Sf~~i~~w~~~i~~~~~~~~~~ilvgNK~DL~~~r~v-~~~~~~~~a~~~~~~~~E~ 144 (166)
T cd01869 66 TITSSYYRGAHGIIIVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTDKRVV-DYSEAQEFADELGIPFLET 144 (166)
T ss_pred CCHHHHHHHCCEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCC-CHHHHHHHHHHCCCEEEEE
T ss_conf 267888563267799711799899999999999999867877744886132011314667-9999999999839969998
Q ss_pred HHHCCCCCCHHHHHHHHHH
Q ss_conf 1100223200678776321
Q gi|254780321|r 169 SAKTGEGIPLLLERIVQQL 187 (606)
Q Consensus 169 SAktG~GV~~LLd~Iv~~i 187 (606)
|||+|.||+++++.|+..+
T Consensus 145 SAk~g~nI~e~F~~l~~~i 163 (166)
T cd01869 145 SAKNATNVEQAFMTMAREI 163 (166)
T ss_pred CCCCCCCHHHHHHHHHHHH
T ss_conf 7687806899999999999
No 162
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.41 E-value=3e-11 Score=94.96 Aligned_cols=157 Identities=17% Similarity=0.181 Sum_probs=101.3
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHCCEEEEEEEEEEEECCCCCEEEEEEEECCCCCHHHH
Q ss_conf 99980138987788999999829805444431130586779871950523279999743788438999961787300279
Q gi|254780321|r 14 FSIVAHIDHGKSTLADRFIQHCRGLTEREMSSQVLDNMDIERERGITIKAQTVRLNYTSTDAKDYQLNLIDTPGHVDFTY 93 (606)
Q Consensus 14 ~~IiaHvDhGKTTL~d~lL~~tg~i~~~~~~~~vlD~~~~EreRGITIka~~~~~~~~~~~~~~y~iNlIDTPGH~DF~~ 93 (606)
++++|-.+-|||+|+.|++...+.+.+... . --|+....+.+.+ .+++.+.++|.||+|...|..
T Consensus 3 ivllGd~gVGKTsli~r~~~~~~~f~~~y~-~----------Tig~~~~~k~~~~----~~~~~i~l~iwDtaG~e~~~~ 67 (164)
T cd04101 3 CAVVGDPAVGKTAFVQMFHSNGAVFPKNYL-M----------TTGCDFVVKEVPV----DTDNTVELFIFDSAGQELYSD 67 (164)
T ss_pred EEEECCCCCCHHHHHHHHHHCCCCCCCCCC-C----------CCCEEEEEEEEEE----CCCCEEEEEEEECCCCCCHHH
T ss_conf 999995995889999999978886688888-8----------6457889999997----899799999997999840067
Q ss_pred HHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHH---CCCCEEEEECCCCCCCCCCCCH-HHHHHHHHHHHHHHHHHHH
Q ss_conf 99999973026899998687886558999999997---0996799832678875321133-8887755532232100011
Q gi|254780321|r 94 EVSRSLSACEGSLLVVDATQGVEAQTLANVYQAID---NNHEIITVLNKADLPSADPDRV-KKQIEETIGISTEDALLVS 169 (606)
Q Consensus 94 EV~r~l~a~dgaiLvVdA~~Gvq~QT~~~~~~A~~---~~l~~I~viNKiD~~~A~~e~v-~~ei~~~~g~~~~~ii~vS 169 (606)
-....++-+++++||-|.++---=+....|..... .+.|+|+|-||+|+.+-+ .| .+|.+++..-..-..+.+|
T Consensus 68 l~~~~~~~a~~~ilvydit~~~Sf~~~~~w~~~i~~~~~~~p~ilVgNK~DL~~~r--~V~~~e~~~~a~~~~~~~~E~S 145 (164)
T cd04101 68 MVSNYWESPSVFILVYDVSNKASFENCSRWVNKVRTASKHMPGVLVGNKMDLADKA--EVTDAQAQAFAQANQLKFFKTS 145 (164)
T ss_pred HHHHHHHHCCEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCC--CCCHHHHHHHHHHCCCEEEEEC
T ss_conf 89999764268999970774668999999999999766898689998722445245--5699999999998899899986
Q ss_pred HHCCCCCCHHHHHHHHHH
Q ss_conf 100223200678776321
Q gi|254780321|r 170 AKTGEGIPLLLERIVQQL 187 (606)
Q Consensus 170 AktG~GV~~LLd~Iv~~i 187 (606)
||+|.||+++++.|+..+
T Consensus 146 Ak~g~nV~e~F~~lar~~ 163 (164)
T cd04101 146 ALRGVGYEEPFESLARAF 163 (164)
T ss_pred CCCCCCHHHHHHHHHHHH
T ss_conf 688909899999999986
No 163
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=99.41 E-value=1.5e-11 Score=97.02 Aligned_cols=158 Identities=20% Similarity=0.171 Sum_probs=105.1
Q ss_pred CEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHCCEEEEEEEEEEEECCCCCEEEEEEEECCCCCH
Q ss_conf 31799980138987788999999829805444431130586779871950523279999743788438999961787300
Q gi|254780321|r 11 IRNFSIVAHIDHGKSTLADRFIQHCRGLTEREMSSQVLDNMDIERERGITIKAQTVRLNYTSTDAKDYQLNLIDTPGHVD 90 (606)
Q Consensus 11 IRN~~IiaHvDhGKTTL~d~lL~~tg~i~~~~~~~~vlD~~~~EreRGITIka~~~~~~~~~~~~~~y~iNlIDTPGH~D 90 (606)
+=.+.++|-..-|||+|+-|++ .|.+...-.. + -|.....+.+ ..+++.++++|.||+|+..
T Consensus 6 ~~KivllGd~~VGKTsl~~r~~--~~~f~~~y~~-T----------ig~~~~~k~~-----~~~~~~v~l~iwDtaGqe~ 67 (189)
T cd04121 6 LLKFLLVGDSDVGKGEILASLQ--DGSTESPYGY-N----------MGIDYKTTTI-----LLDGRRVKLQLWDTSGQGR 67 (189)
T ss_pred EEEEEEECCCCCCHHHHHHHHH--CCCCCCCCCC-C----------CCEEEEEEEE-----EECCEEEEEEEECCCCCCC
T ss_conf 9999999989978999999997--4997898687-6----------5379899999-----9999999999981788622
Q ss_pred HHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHH---CCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 27999999973026899998687886558999999997---099679983267887532113388877555322321000
Q gi|254780321|r 91 FTYEVSRSLSACEGSLLVVDATQGVEAQTLANVYQAID---NNHEIITVLNKADLPSADPDRVKKQIEETIGISTEDALL 167 (606)
Q Consensus 91 F~~EV~r~l~a~dgaiLvVdA~~Gvq~QT~~~~~~A~~---~~l~~I~viNKiD~~~A~~e~v~~ei~~~~g~~~~~ii~ 167 (606)
|..-...-++-++|+|||-|.+.=--=+....|..-+. -++|+|+|-||+|++.-+ .--.+|.+++-.-..-..+.
T Consensus 68 f~~l~~~y~r~a~~~ilvyDvt~~~Sf~~l~~w~~~i~~~~~~~p~iLVGNK~DL~~~r-~V~~ee~~~~A~~~~~~f~E 146 (189)
T cd04121 68 FCTIFRSYSRGAQGIILVYDITNRWSFDGIDRWIKEIDEHAPGVPKILVGNRLHLAFKR-QVATEQAQAYAERNGMTFFE 146 (189)
T ss_pred HHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHCC-CCCHHHHHHHHHHCCCEEEE
T ss_conf 11678988663370489822798899999999999999976898789961325503308-89999999999988999999
Q ss_pred HHHHCCCCCCHHHHHHHHHH
Q ss_conf 11100223200678776321
Q gi|254780321|r 168 VSAKTGEGIPLLLERIVQQL 187 (606)
Q Consensus 168 vSAktG~GV~~LLd~Iv~~i 187 (606)
+|||+|.||+++++.+...+
T Consensus 147 tSAk~g~nV~e~F~~l~~~i 166 (189)
T cd04121 147 VSPLCNFNITESFTELARIV 166 (189)
T ss_pred ECCCCCCCHHHHHHHHHHHH
T ss_conf 60067939899999999999
No 164
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=99.41 E-value=9.6e-12 Score=98.31 Aligned_cols=151 Identities=22% Similarity=0.305 Sum_probs=99.8
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHCCEEEEEEEEEEEECCCCCEEEEEEEECCCCCHHH
Q ss_conf 79998013898778899999982980544443113058677987195052327999974378843899996178730027
Q gi|254780321|r 13 NFSIVAHIDHGKSTLADRFIQHCRGLTEREMSSQVLDNMDIERERGITIKAQTVRLNYTSTDAKDYQLNLIDTPGHVDFT 92 (606)
Q Consensus 13 N~~IiaHvDhGKTTL~d~lL~~tg~i~~~~~~~~vlD~~~~EreRGITIka~~~~~~~~~~~~~~y~iNlIDTPGH~DF~ 92 (606)
.++++|-.+-|||+|.-|++ .+.+...- --||-.. ..-. ...+++.+.++|.||+|+.+|.
T Consensus 3 KvvlvGd~~VGKTsli~r~~--~~~F~~~y---------------~~Ti~~~-~~k~-~~i~~~~~~l~iwDtaG~e~~~ 63 (162)
T cd04138 3 KLVVVGAGGVGKSALTIQLI--QNHFVDEY---------------DPTIEDS-YRKQ-VVIDGETCLLDILDTAGQEEYS 63 (162)
T ss_pred EEEEECCCCCCHHHHHHHHH--HCCCCCCC---------------CCCCCCE-EEEE-EEECCEEEEEEEEECCCCCCCC
T ss_conf 99998999988999999998--39288756---------------8855527-9999-9999999999999799860111
Q ss_pred HHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHH-----CCCCEEEEECCCCCCCCCCCCHHHHHH---HHHHHHHHH
Q ss_conf 999999973026899998687886558999999997-----099679983267887532113388877---555322321
Q gi|254780321|r 93 YEVSRSLSACEGSLLVVDATQGVEAQTLANVYQAID-----NNHEIITVLNKADLPSADPDRVKKQIE---ETIGISTED 164 (606)
Q Consensus 93 ~EV~r~l~a~dgaiLvVdA~~Gvq~QT~~~~~~A~~-----~~l~~I~viNKiD~~~A~~e~v~~ei~---~~~g~~~~~ 164 (606)
.-....++-+|++|||-|.++---=+....|+.-+. ..+|+|+|-||+|+++-.+. .+|.+ .-+++ .
T Consensus 64 ~l~~~~~~~a~~~ilvydvt~~~Sf~~v~~w~~~i~~~~~~~~~piilVgNK~Dl~~r~V~--~~e~~~~a~~~~~---~ 138 (162)
T cd04138 64 AMRDQYMRTGEGFLCVFAINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLAARTVS--SRQGQDLAKSYGI---P 138 (162)
T ss_pred HHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCHHHCCCC--HHHHHHHHHHCCC---E
T ss_conf 4789871578779999617988999989999999998548888549999765356455588--9999999998099---8
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHH
Q ss_conf 00011100223200678776321
Q gi|254780321|r 165 ALLVSAKTGEGIPLLLERIVQQL 187 (606)
Q Consensus 165 ii~vSAktG~GV~~LLd~Iv~~i 187 (606)
.+.+||++|.||+++++.++..+
T Consensus 139 f~E~SAk~~~nV~e~F~~l~~~I 161 (162)
T cd04138 139 YIETSAKTRQGVEEAFYTLVREI 161 (162)
T ss_pred EEEECCCCCCCHHHHHHHHHHHC
T ss_conf 99973899859899999999963
No 165
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.40 E-value=1.3e-11 Score=97.50 Aligned_cols=155 Identities=22% Similarity=0.344 Sum_probs=101.6
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHCCEEEEEEEEEEEECCCCCEEEEEEEECCCCCHH
Q ss_conf 17999801389877889999998298054444311305867798719505232799997437884389999617873002
Q gi|254780321|r 12 RNFSIVAHIDHGKSTLADRFIQHCRGLTEREMSSQVLDNMDIERERGITIKAQTVRLNYTSTDAKDYQLNLIDTPGHVDF 91 (606)
Q Consensus 12 RN~~IiaHvDhGKTTL~d~lL~~tg~i~~~~~~~~vlD~~~~EreRGITIka~~~~~~~~~~~~~~y~iNlIDTPGH~DF 91 (606)
|-++++|-.+-|||+|.-|++ .+.+.+.- ..++ |-.. .+ .+. .+++.|.++|.||+|+.+|
T Consensus 2 ~KIvlvGd~~VGKTsli~r~~--~~~f~~~y-~~Ti----------~~~~-~k--~i~---~~~~~~~l~iwDtaG~e~~ 62 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFV--EGHFVESY-YPTI----------ENTF-SK--IIR---YKGQDYHLEIVDTAGQDEY 62 (180)
T ss_pred CEEEEECCCCCCHHHHHHHHH--CCCCCCCC-CCCC----------CCCC-CE--EEE---ECCEEEEEEEEECCCCCCC
T ss_conf 889999989988999999997--09789985-8812----------4411-37--999---9999999999989987010
Q ss_pred HHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHH-----HCCCCEEEEECCCCCCCCCCCC--HHHHHHHHHHHHHHH
Q ss_conf 799999997302689999868788655899999999-----7099679983267887532113--388877555322321
Q gi|254780321|r 92 TYEVSRSLSACEGSLLVVDATQGVEAQTLANVYQAI-----DNNHEIITVLNKADLPSADPDR--VKKQIEETIGISTED 164 (606)
Q Consensus 92 ~~EV~r~l~a~dgaiLvVdA~~Gvq~QT~~~~~~A~-----~~~l~~I~viNKiD~~~A~~e~--v~~ei~~~~g~~~~~ 164 (606)
..-.....+-++|+|||.|.++=---+....|+... ..++|+|+|-||+|++.-+.-. -.+++..-+++ .
T Consensus 63 ~~~~~~~~~~a~~~ilvydvt~~~Sf~~~~~~~~~~~~~~~~~~~piilVgNK~DL~~~r~V~~~e~~~~a~~~~~---~ 139 (180)
T cd04137 63 SILPQKYSIGIHGYILVYSVTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHTQRQVSTEEGKELAESWGA---A 139 (180)
T ss_pred CHHHHHHHHHCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHCCCCHHHHHHHHHHCCC---E
T ss_conf 0667999863557899974388788999999999999975888886797765346244078899999999998399---8
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHH
Q ss_conf 000111002232006787763210
Q gi|254780321|r 165 ALLVSAKTGEGIPLLLERIVQQLP 188 (606)
Q Consensus 165 ii~vSAktG~GV~~LLd~Iv~~iP 188 (606)
.+.+|||+|.||+++++.+++.+-
T Consensus 140 f~EtSAk~g~nV~e~F~~l~~~i~ 163 (180)
T cd04137 140 FLESSARENENVEEAFELLIEEIE 163 (180)
T ss_pred EEEECCCCCCCHHHHHHHHHHHHH
T ss_conf 999776889198999999999998
No 166
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=99.40 E-value=1.4e-11 Score=97.31 Aligned_cols=155 Identities=25% Similarity=0.290 Sum_probs=99.8
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHCCEEEEEEEEEEEECCCCCEEEEEEEECCCCCHHHH
Q ss_conf 99980138987788999999829805444431130586779871950523279999743788438999961787300279
Q gi|254780321|r 14 FSIVAHIDHGKSTLADRFIQHCRGLTEREMSSQVLDNMDIERERGITIKAQTVRLNYTSTDAKDYQLNLIDTPGHVDFTY 93 (606)
Q Consensus 14 ~~IiaHvDhGKTTL~d~lL~~tg~i~~~~~~~~vlD~~~~EreRGITIka~~~~~~~~~~~~~~y~iNlIDTPGH~DF~~ 93 (606)
++++|....|||+|.-|++ .+.+.... ..++ |+....+.+. .+++.+.++|.||+|...|..
T Consensus 3 ivl~Gd~~vGKTsli~r~~--~~~f~~~~-~~Ti----------g~~~~~k~~~-----~~~~~~~l~iwDtaG~e~~~~ 64 (161)
T cd04113 3 FIIIGSSGTGKSCLLHRFV--ENKFKEDS-QHTI----------GVEFGSKIIR-----VGGKRVKLQIWDTAGQERFRS 64 (161)
T ss_pred EEEECCCCCCHHHHHHHHH--HCCCCCCC-CCCC----------CEEEEEEEEE-----ECCEEEEEEEEECCCCHHHHH
T ss_conf 9999949967999999997--29899987-9976----------4578999999-----999999999998999701226
Q ss_pred HHHHHHHHCCEEEEEEECCCCCCHHHHHHHHH-HHH---CCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999973026899998687886558999999-997---09967998326788753211338887755532232100011
Q gi|254780321|r 94 EVSRSLSACEGSLLVVDATQGVEAQTLANVYQ-AID---NNHEIITVLNKADLPSADPDRVKKQIEETIGISTEDALLVS 169 (606)
Q Consensus 94 EV~r~l~a~dgaiLvVdA~~Gvq~QT~~~~~~-A~~---~~l~~I~viNKiD~~~A~~e~v~~ei~~~~g~~~~~ii~vS 169 (606)
-....++-++++|||.|.++----+....|.. ... .++++++|-||+|+..-+. --.+|.+++..-..-..+.+|
T Consensus 65 ~~~~~~~~a~~~ilvydit~~~Sf~~~~~w~~~i~~~~~~~~~iilVgNK~Dl~~~r~-V~~~e~~~~a~~~~~~~~E~S 143 (161)
T cd04113 65 VTRSYYRGAAGALLVYDITNRTSFEALPTWLSDARALASPNIVVILVGNKSDLADQRE-VTFLEASRFAQENGLLFLETS 143 (161)
T ss_pred HHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHCCC-CCHHHHHHHHHHCCCEEEEEC
T ss_conf 7899840577789953689889999999999999986799964986034344000378-899999999998599799974
Q ss_pred HHCCCCCCHHHHHHHHHH
Q ss_conf 100223200678776321
Q gi|254780321|r 170 AKTGEGIPLLLERIVQQL 187 (606)
Q Consensus 170 AktG~GV~~LLd~Iv~~i 187 (606)
||+|.||+++++.++..+
T Consensus 144 Ak~~~nV~e~F~~la~~i 161 (161)
T cd04113 144 ALTGENVEEAFLKCARSI 161 (161)
T ss_pred CCCCCCHHHHHHHHHHHC
T ss_conf 156905899999999709
No 167
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=99.40 E-value=9.4e-12 Score=98.38 Aligned_cols=161 Identities=21% Similarity=0.248 Sum_probs=106.0
Q ss_pred HHCEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHCCEEEEEEEEEEEECCCCCEEEEEEEECCCC
Q ss_conf 25317999801389877889999998298054444311305867798719505232799997437884389999617873
Q gi|254780321|r 9 SRIRNFSIVAHIDHGKSTLADRFIQHCRGLTEREMSSQVLDNMDIERERGITIKAQTVRLNYTSTDAKDYQLNLIDTPGH 88 (606)
Q Consensus 9 ~~IRN~~IiaHvDhGKTTL~d~lL~~tg~i~~~~~~~~vlD~~~~EreRGITIka~~~~~~~~~~~~~~y~iNlIDTPGH 88 (606)
+.+=-+.++|-..-|||+|.-|++ .+.+..... .+ -|+....+.+. .+++.+.++|.||+|.
T Consensus 4 d~~~KIvlvGd~~VGKTSli~r~~--~~~F~~~~~-~T----------ig~d~~~k~v~-----i~~~~v~l~iwDtaGq 65 (199)
T cd04110 4 DHLFKLLIIGDSGVGKSSLLLRFA--DNTFSGSYI-TT----------IGVDFKIRTVE-----INGERVKLQIWDTAGQ 65 (199)
T ss_pred CEEEEEEEECCCCCCHHHHHHHHH--CCCCCCCCC-CC----------CCEEEEEEEEE-----ECCEEEEEEEEECCCC
T ss_conf 757799999979988899999995--099999868-97----------55587899999-----9999999999989998
Q ss_pred CHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHH---CCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 0027999999973026899998687886558999999997---0996799832678875321133888775553223210
Q gi|254780321|r 89 VDFTYEVSRSLSACEGSLLVVDATQGVEAQTLANVYQAID---NNHEIITVLNKADLPSADPDRVKKQIEETIGISTEDA 165 (606)
Q Consensus 89 ~DF~~EV~r~l~a~dgaiLvVdA~~Gvq~QT~~~~~~A~~---~~l~~I~viNKiD~~~A~~e~v~~ei~~~~g~~~~~i 165 (606)
..|..-....++-++++|||.|.+.----+-...|..-+. ..+++|+|-||+|++.-+.-. .++.+++..-..-..
T Consensus 66 e~~~~l~~~~~~~a~~~ilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~ilVGNK~Dl~~~r~v~-~~e~~~~a~~~~~~f 144 (199)
T cd04110 66 ERFRTITSTYYRGTHGVIVVYDVTNGESFVNVKRWLQEIEQNCDDVCKVLVGNKNDDPERKVVE-TEDAYKFAGQMGISL 144 (199)
T ss_pred CCCCCCHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHCCCC-HHHHHHHHHHCCCEE
T ss_conf 1235352666424654238971798899999999999999759987579998855447546999-999999999869979
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHH
Q ss_conf 00111002232006787763210
Q gi|254780321|r 166 LLVSAKTGEGIPLLLERIVQQLP 188 (606)
Q Consensus 166 i~vSAktG~GV~~LLd~Iv~~iP 188 (606)
+.+|||+|.||+++++.|++.+-
T Consensus 145 ~E~SAktg~nV~e~F~~i~~~i~ 167 (199)
T cd04110 145 FETSAKENINVEEMFNCITELVL 167 (199)
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
T ss_conf 99868999298999999999999
No 168
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.39 E-value=1.3e-11 Score=97.45 Aligned_cols=158 Identities=19% Similarity=0.262 Sum_probs=102.0
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHCCEEEEEEEEEEEECCCCCEEEEEEEECCCCCHHHH
Q ss_conf 99980138987788999999829805444431130586779871950523279999743788438999961787300279
Q gi|254780321|r 14 FSIVAHIDHGKSTLADRFIQHCRGLTEREMSSQVLDNMDIERERGITIKAQTVRLNYTSTDAKDYQLNLIDTPGHVDFTY 93 (606)
Q Consensus 14 ~~IiaHvDhGKTTL~d~lL~~tg~i~~~~~~~~vlD~~~~EreRGITIka~~~~~~~~~~~~~~y~iNlIDTPGH~DF~~ 93 (606)
++++|...-|||+|+-|++ .+.+...- ..++ + ....+ .+ ..+++.+.++|.||+|...|..
T Consensus 2 IvvlGd~~VGKTSLi~rf~--~~~F~~~y-~~Ti------~-----~~~~k--~~---~v~~~~v~l~i~DtaG~e~~~~ 62 (198)
T cd04147 2 LVFMGAAGVGKTALIQRFL--YDTFEPKY-RRTV------E-----EMHRK--EY---EVGGVSLTLDILDTSGSYSFPA 62 (198)
T ss_pred EEEECCCCCCHHHHHHHHH--HCCCCCCC-CCCH------H-----HEEEE--EE---EECCEEEEEEEEECCCCCCCHH
T ss_conf 8999989977999999998--59899888-8872------5-----41889--99---9899799999997877513014
Q ss_pred HHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHH-H----CCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHH-HHHHHH
Q ss_conf 9999997302689999868788655899999999-7----099679983267887532113388877555322-321000
Q gi|254780321|r 94 EVSRSLSACEGSLLVVDATQGVEAQTLANVYQAI-D----NNHEIITVLNKADLPSADPDRVKKQIEETIGIS-TEDALL 167 (606)
Q Consensus 94 EV~r~l~a~dgaiLvVdA~~Gvq~QT~~~~~~A~-~----~~l~~I~viNKiD~~~A~~e~v~~ei~~~~g~~-~~~ii~ 167 (606)
-....++-+|++|||-|-++=--=+....|+.-+ + ..+|+|+|-||+|+..-.-.--.+|.+++.... .-..+.
T Consensus 63 l~~~~~r~a~~~ilVyDit~~~Sf~~l~~w~~~i~~~~~~~~ipiilVGNK~Dll~~~R~V~~~e~~~~a~~~~~~~f~E 142 (198)
T cd04147 63 MRKLSIQNSDAFALVYAVDDPESFEEVERLREEILEVKEDKFVPIVVVGNKADSLEEERQVPAKDALSTVELDWNCGFVE 142 (198)
T ss_pred HHHHHCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHCCCCEEEE
T ss_conf 55554158866899961697799999999999999962888982899987876501047848999999998559978998
Q ss_pred HHHHCCCCCCHHHHHHHHHHHCC
Q ss_conf 11100223200678776321000
Q gi|254780321|r 168 VSAKTGEGIPLLLERIVQQLPSP 190 (606)
Q Consensus 168 vSAktG~GV~~LLd~Iv~~iP~P 190 (606)
+||++|.||+++++.++..+--|
T Consensus 143 tSAktg~nV~e~F~~l~r~i~~~ 165 (198)
T cd04147 143 TSAKDNENVLEVFKELLRQANLP 165 (198)
T ss_pred CCCCCCCCHHHHHHHHHHHHCCH
T ss_conf 77999949899999999997735
No 169
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=99.39 E-value=2.5e-11 Score=95.55 Aligned_cols=162 Identities=21% Similarity=0.257 Sum_probs=100.2
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHCCEEEEEEEEEEEEC-----CCCCEEEEEEEECC
Q ss_conf 1799980138987788999999829805444431130586779871950523279999743-----78843899996178
Q gi|254780321|r 12 RNFSIVAHIDHGKSTLADRFIQHCRGLTEREMSSQVLDNMDIERERGITIKAQTVRLNYTS-----TDAKDYQLNLIDTP 86 (606)
Q Consensus 12 RN~~IiaHvDhGKTTL~d~lL~~tg~i~~~~~~~~vlD~~~~EreRGITIka~~~~~~~~~-----~~~~~y~iNlIDTP 86 (606)
=-++++|..+-|||+|.-|++ .|.+...- ..++ |+....+.+...... ..++...++|.||+
T Consensus 5 ~KivvvGd~~VGKTsli~r~~--~~~f~~~y-~~Ti----------g~~~~~k~i~~~~~~~~~~~~~~~~v~l~iwDta 71 (180)
T cd04127 5 IKFLALGDSGVGKTSFLYQYT--DNKFNPKF-ITTV----------GIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTA 71 (180)
T ss_pred EEEEEECCCCCCHHHHHHHHH--CCCCCCCC-CCCC----------CEEEEEEEEEECCCCCCCCCCCCCEEEEEEEECC
T ss_conf 899999999988899999996--19589986-8843----------2268899999847655444578858999999898
Q ss_pred CCCHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHH-H----CCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 73002799999997302689999868788655899999999-7----099679983267887532113388877555322
Q gi|254780321|r 87 GHVDFTYEVSRSLSACEGSLLVVDATQGVEAQTLANVYQAI-D----NNHEIITVLNKADLPSADPDRVKKQIEETIGIS 161 (606)
Q Consensus 87 GH~DF~~EV~r~l~a~dgaiLvVdA~~Gvq~QT~~~~~~A~-~----~~l~~I~viNKiD~~~A~~e~v~~ei~~~~g~~ 161 (606)
|+..|..-....++-++|+|||.|.++---=+-...|..-+ . .+.++++|-||+|+++-+. --.++.+++..--
T Consensus 72 Gqe~~~~l~~~~~~~a~~~ilvydit~~~Sf~~l~~w~~~i~~~~~~~~~~iilVGNK~DL~~~r~-V~~~e~~~~a~~~ 150 (180)
T cd04127 72 GQERFRSLTTAFFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDIVLCGNKADLEDQRQ-VSEEQAKALADKY 150 (180)
T ss_pred CCHHHHHHHHHHHHHHCEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCHHHCCC-CCHHHHHHHHHHC
T ss_conf 863047888999875436589996898899998999999999854668985787503236675088-8999999999984
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHH
Q ss_conf 32100011100223200678776321
Q gi|254780321|r 162 TEDALLVSAKTGEGIPLLLERIVQQL 187 (606)
Q Consensus 162 ~~~ii~vSAktG~GV~~LLd~Iv~~i 187 (606)
.-..+.+|||+|.||+++++.+++.+
T Consensus 151 ~~~~~E~SAk~g~nV~e~F~~l~~~i 176 (180)
T cd04127 151 GIPYFETSAATGTNVEKAVERLLDLV 176 (180)
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHHH
T ss_conf 99799980377919899999999999
No 170
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=99.39 E-value=3.4e-11 Score=94.65 Aligned_cols=153 Identities=20% Similarity=0.311 Sum_probs=101.0
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHCCEEEEEEEEEEEECCCCCEEEEEEEECCCCCHHHH
Q ss_conf 99980138987788999999829805444431130586779871950523279999743788438999961787300279
Q gi|254780321|r 14 FSIVAHIDHGKSTLADRFIQHCRGLTEREMSSQVLDNMDIERERGITIKAQTVRLNYTSTDAKDYQLNLIDTPGHVDFTY 93 (606)
Q Consensus 14 ~~IiaHvDhGKTTL~d~lL~~tg~i~~~~~~~~vlD~~~~EreRGITIka~~~~~~~~~~~~~~y~iNlIDTPGH~DF~~ 93 (606)
++++|-...|||+|..|++ .|.....-.. + -|+....+ ++.+ ++..+.++|.||+|+.+|..
T Consensus 3 ivvvG~~~vGKTSLi~r~~--~~~f~~~y~p-T----------ig~~~~~k--~~~~---~~~~~~l~iwDt~G~~~~~~ 64 (168)
T cd04119 3 VISMGNSGVGKSCIIKRYC--EGRFVSKYLP-T----------IGIDYGVK--KVSV---RNKEVRVNFFDLSGHPEYLE 64 (168)
T ss_pred EEEECCCCCCHHHHHHHHH--HCCCCCCCCC-C----------CCEEEEEE--EEEE---CCEEEEEEEEECCCCHHHHH
T ss_conf 9999959956899999996--3999998589-7----------65577799--9999---99999999998999764789
Q ss_pred HHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHH---------CCCCEEEEECCCCCCCCCCCCH--HHHHHHHHHHHH
Q ss_conf 99999973026899998687886558999999997---------0996799832678875321133--888775553223
Q gi|254780321|r 94 EVSRSLSACEGSLLVVDATQGVEAQTLANVYQAID---------NNHEIITVLNKADLPSADPDRV--KKQIEETIGIST 162 (606)
Q Consensus 94 EV~r~l~a~dgaiLvVdA~~Gvq~QT~~~~~~A~~---------~~l~~I~viNKiD~~~A~~e~v--~~ei~~~~g~~~ 162 (606)
-....++-+|++|||-|.++----+....|+.-.. ...++++|=||+|++..+.-.. .++.....++
T Consensus 65 ~~~~~~~~ad~~ilvydit~~~Sf~~l~~w~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~~-- 142 (168)
T cd04119 65 VRNEFYKDTQGVLLVYDVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRAVSEDEGRLWAESKGF-- 142 (168)
T ss_pred HHHHHHHHCCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEECCCCCCCCCCHHHHHHHHHHCCC--
T ss_conf 999998747788999508974448999999999999824534566862999854034442578899999999998699--
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHH
Q ss_conf 2100011100223200678776321
Q gi|254780321|r 163 EDALLVSAKTGEGIPLLLERIVQQL 187 (606)
Q Consensus 163 ~~ii~vSAktG~GV~~LLd~Iv~~i 187 (606)
..+.+|||+|.||+++++.|+..+
T Consensus 143 -~~~E~Sak~g~~V~e~F~~l~~~i 166 (168)
T cd04119 143 -KYFETSACTGEGVNEMFQTLFSSI 166 (168)
T ss_pred -EEEEECCCCCCCHHHHHHHHHHHH
T ss_conf -899988577908899999999997
No 171
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=99.39 E-value=1.7e-11 Score=96.66 Aligned_cols=155 Identities=25% Similarity=0.296 Sum_probs=103.2
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHCCEEEEEEEEEEEECCCCCEEEEEEEECCCCCHHHH
Q ss_conf 99980138987788999999829805444431130586779871950523279999743788438999961787300279
Q gi|254780321|r 14 FSIVAHIDHGKSTLADRFIQHCRGLTEREMSSQVLDNMDIERERGITIKAQTVRLNYTSTDAKDYQLNLIDTPGHVDFTY 93 (606)
Q Consensus 14 ~~IiaHvDhGKTTL~d~lL~~tg~i~~~~~~~~vlD~~~~EreRGITIka~~~~~~~~~~~~~~y~iNlIDTPGH~DF~~ 93 (606)
+.++|-.+-|||+|+.|+. .+.+.+... .+ -|+....+.+. .+++.++++|.||+|+..|..
T Consensus 3 IvllGd~gVGKTsLi~rf~--~~~F~~~y~-~T----------ig~d~~~k~i~-----~~~~~v~l~IWDTaGqe~f~s 64 (202)
T cd04120 3 VIIIGSRGVGKTSLMRRFT--DDTFCEACK-SG----------VGVDFKIKTVE-----LRGKKIRLQIWDTAGQERFNS 64 (202)
T ss_pred EEEECCCCCCHHHHHHHHH--CCCCCCCCC-CC----------CCEEEEEEEEE-----ECCEEEEEEEEECCCCCCCCC
T ss_conf 9999979972999999995--499999879-97----------64688999999-----999999999997988612452
Q ss_pred HHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHH----CCCCEEEEECCCCCCCCCCCCHHHHHHHHHH-HHHHHHHHH
Q ss_conf 99999973026899998687886558999999997----0996799832678875321133888775553-223210001
Q gi|254780321|r 94 EVSRSLSACEGSLLVVDATQGVEAQTLANVYQAID----NNHEIITVLNKADLPSADPDRVKKQIEETIG-ISTEDALLV 168 (606)
Q Consensus 94 EV~r~l~a~dgaiLvVdA~~Gvq~QT~~~~~~A~~----~~l~~I~viNKiD~~~A~~e~v~~ei~~~~g-~~~~~ii~v 168 (606)
-....++-++|+|||.|-+.----+....|+.-++ .+.++|+|=||+|+.+.+ +--.+|.+++-. +..-..+.+
T Consensus 65 l~~~yyr~a~~~ilVyDit~~~SF~~l~~W~~~i~~~~~~~~~iiLVGNK~DL~~~R-~Vs~~e~~~~A~~~~~~~f~Et 143 (202)
T cd04120 65 ITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDR-EISRQQGEKFAQQITGMRFCEA 143 (202)
T ss_pred CHHHHHHHHCEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCHHHC-CCCHHHHHHHHHHCCCCEEEEC
T ss_conf 357887641445899856888999999999999997466887189876536505317-8799999999982799889992
Q ss_pred HHHCCCCCCHHHHHHHHHH
Q ss_conf 1100223200678776321
Q gi|254780321|r 169 SAKTGEGIPLLLERIVQQL 187 (606)
Q Consensus 169 SAktG~GV~~LLd~Iv~~i 187 (606)
|||+|.||+++++.+++.+
T Consensus 144 SAkt~~nV~e~F~~l~~~i 162 (202)
T cd04120 144 SAKDNFNVDEIFLKLVDDI 162 (202)
T ss_pred CCCCCCCHHHHHHHHHHHH
T ss_conf 5899969899999999999
No 172
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=99.39 E-value=2.2e-11 Score=95.96 Aligned_cols=155 Identities=17% Similarity=0.210 Sum_probs=102.9
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHCCEEEEEEEEEEEECCCCCEEEEEEEECCCCCHHHH
Q ss_conf 99980138987788999999829805444431130586779871950523279999743788438999961787300279
Q gi|254780321|r 14 FSIVAHIDHGKSTLADRFIQHCRGLTEREMSSQVLDNMDIERERGITIKAQTVRLNYTSTDAKDYQLNLIDTPGHVDFTY 93 (606)
Q Consensus 14 ~~IiaHvDhGKTTL~d~lL~~tg~i~~~~~~~~vlD~~~~EreRGITIka~~~~~~~~~~~~~~y~iNlIDTPGH~DF~~ 93 (606)
++++|-.+-|||+|.-|++ .|.+.+.. ..++ |+.... ..+. .+++.+.++|.||+|+..|..
T Consensus 3 ivlvGd~~VGKTsli~r~~--~~~f~~~~-~~Ti----------g~~~~~--~~~~---~~~~~v~l~iwDtaGqe~~~~ 64 (166)
T cd00877 3 LVLVGDGGTGKTTFVKRHL--TGEFEKKY-VATL----------GVEVHP--LDFH---TNRGKIRFNVWDTAGQEKFGG 64 (166)
T ss_pred EEEECCCCCCHHHHHHHHH--HCCCCCCC-CCCC----------CEEEEE--EEEE---ECCEEEEEEEEECCCCHHHHH
T ss_conf 9999999988899999998--39999986-8732----------556799--9999---999799999997578715666
Q ss_pred HHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHH---HCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999997302689999868788655899999999---7099679983267887532113388877555322321000111
Q gi|254780321|r 94 EVSRSLSACEGSLLVVDATQGVEAQTLANVYQAI---DNNHEIITVLNKADLPSADPDRVKKQIEETIGISTEDALLVSA 170 (606)
Q Consensus 94 EV~r~l~a~dgaiLvVdA~~Gvq~QT~~~~~~A~---~~~l~~I~viNKiD~~~A~~e~v~~ei~~~~g~~~~~ii~vSA 170 (606)
-....++-++|+|||.|.++=--=+....|+.-+ ..++|+|+|-||+|+..... ..+..+...-..-..+.+||
T Consensus 65 l~~~y~~~a~~~ilvyDvt~~~Sf~~v~~w~~~i~~~~~~~piilVgNK~Dl~~~~~---~~~~~~~~~~~~~~~~EtSA 141 (166)
T cd00877 65 LRDGYYIGGQCAIIMFDVTSRVTYKNVPNWHRDLVRVCGNIPIVLCGNKVDIKDRKV---KAKQITFHRKKNLQYYEISA 141 (166)
T ss_pred HHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCC---CHHHHHHHHHCCCEEEEECC
T ss_conf 878874006579984378988899999999999998689998999998621750366---79999999978998999845
Q ss_pred HCCCCCCHHHHHHHHHHHC
Q ss_conf 0022320067877632100
Q gi|254780321|r 171 KTGEGIPLLLERIVQQLPS 189 (606)
Q Consensus 171 ktG~GV~~LLd~Iv~~iP~ 189 (606)
|+|.||+++++.|+..+..
T Consensus 142 k~~~nV~e~F~~la~~il~ 160 (166)
T cd00877 142 KSNYNFEKPFLWLARKLLG 160 (166)
T ss_pred CCCCCHHHHHHHHHHHHHC
T ss_conf 8990989999999999842
No 173
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.39 E-value=1.9e-11 Score=96.38 Aligned_cols=157 Identities=15% Similarity=0.225 Sum_probs=101.6
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHCCEEEEEEEEEEEECCCCCEEEEEEEECCCCCHHHH
Q ss_conf 99980138987788999999829805444431130586779871950523279999743788438999961787300279
Q gi|254780321|r 14 FSIVAHIDHGKSTLADRFIQHCRGLTEREMSSQVLDNMDIERERGITIKAQTVRLNYTSTDAKDYQLNLIDTPGHVDFTY 93 (606)
Q Consensus 14 ~~IiaHvDhGKTTL~d~lL~~tg~i~~~~~~~~vlD~~~~EreRGITIka~~~~~~~~~~~~~~y~iNlIDTPGH~DF~~ 93 (606)
+.++|-.+-|||+|.-|++ .+.+.+.- ..++ |+....+ .+.+ .+++.+.++|.||+|+.+|..
T Consensus 3 vvllGd~gVGKTsLi~rf~--~~~F~~~y-~~Ti----------g~df~~k--~i~~--~~~~~v~l~iwDtaGqe~~~~ 65 (201)
T cd04107 3 VLVIGDLGVGKTSIIKRYV--HGIFSQHY-KATI----------GVDFALK--VIEW--DPNTVVRLQLWDIAGQERFGG 65 (201)
T ss_pred EEEECCCCCCHHHHHHHHH--HCCCCCCC-CCCC----------CEEEEEE--EEEE--CCCEEEEEEEEECCCCCCCCC
T ss_conf 9999999978999999998--29999988-8875----------6778998--9996--798199999986899832220
Q ss_pred HHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHH--------HCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHH-HHHH
Q ss_conf 9999997302689999868788655899999999--------709967998326788753211338887755532-2321
Q gi|254780321|r 94 EVSRSLSACEGSLLVVDATQGVEAQTLANVYQAI--------DNNHEIITVLNKADLPSADPDRVKKQIEETIGI-STED 164 (606)
Q Consensus 94 EV~r~l~a~dgaiLvVdA~~Gvq~QT~~~~~~A~--------~~~l~~I~viNKiD~~~A~~e~v~~ei~~~~g~-~~~~ 164 (606)
-....++-++|+|||.|.+.---=+....|+.-+ ...+|+|+|-||+|+...+. -..+++.++..- ....
T Consensus 66 l~~~y~~~a~~~ilvydvt~~~Sf~~l~~w~~~i~~~~~~~~~~~ipiilVgNK~DL~~~~~-v~~ee~~~~a~~~~~~~ 144 (201)
T cd04107 66 MTRVYYRGAVGAIIVFDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKKRLA-KDGEQMDQFCKENGFIG 144 (201)
T ss_pred CHHHHCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCC-CCHHHHHHHHHHCCCCE
T ss_conf 03755557764799982798899998999999999986213789871899866556411256-89999999999779980
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHH
Q ss_conf 000111002232006787763210
Q gi|254780321|r 165 ALLVSAKTGEGIPLLLERIVQQLP 188 (606)
Q Consensus 165 ii~vSAktG~GV~~LLd~Iv~~iP 188 (606)
.+.+|||+|.||+++++.++..+-
T Consensus 145 ~~EtSAktg~nV~e~F~~l~~~i~ 168 (201)
T cd04107 145 WFETSAKEGINIEEAMRFLVKNIL 168 (201)
T ss_pred EEEECCCCCCCHHHHHHHHHHHHH
T ss_conf 999779999498999999999998
No 174
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.39 E-value=1.2e-11 Score=97.57 Aligned_cols=149 Identities=15% Similarity=0.187 Sum_probs=101.1
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHCCEEEEEEEEEEEECCCCCEEEEEEEECCCCCHHHH
Q ss_conf 99980138987788999999829805444431130586779871950523279999743788438999961787300279
Q gi|254780321|r 14 FSIVAHIDHGKSTLADRFIQHCRGLTEREMSSQVLDNMDIERERGITIKAQTVRLNYTSTDAKDYQLNLIDTPGHVDFTY 93 (606)
Q Consensus 14 ~~IiaHvDhGKTTL~d~lL~~tg~i~~~~~~~~vlD~~~~EreRGITIka~~~~~~~~~~~~~~y~iNlIDTPGH~DF~~ 93 (606)
+.++|--++||||+..+|. .+.+... . -|+-.+...+.| +++.+++.|+.|+.-|..
T Consensus 2 IlilGl~~sGKTtil~~l~--~~~~~~~---------~-------pT~G~~~~~i~~-----~~~~l~iwD~gG~~~~r~ 58 (169)
T cd04158 2 VVTLGLDGAGKTTILFKLK--QDEFMQP---------I-------PTIGFNVETVEY-----KNLKFTIWDVGGKHKLRP 58 (169)
T ss_pred EEEECCCCCCHHHHHHHHH--CCCCCCC---------C-------CCCCCCEEEEEE-----CCEEEEEEECCCCCCCCH
T ss_conf 9999989998899999995--7996897---------7-------868816699998-----988999998999724463
Q ss_pred HHHHHHHHCCEEEEEEECCCCCCH-HHHHHHHHHH----HCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHH------
Q ss_conf 999999730268999986878865-5899999999----70996799832678875321133888775553223------
Q gi|254780321|r 94 EVSRSLSACEGSLLVVDATQGVEA-QTLANVYQAI----DNNHEIITVLNKADLPSADPDRVKKQIEETIGIST------ 162 (606)
Q Consensus 94 EV~r~l~a~dgaiLvVdA~~Gvq~-QT~~~~~~A~----~~~l~~I~viNKiD~~~A~~e~v~~ei~~~~g~~~------ 162 (606)
-...-.+-|+|+|+|||+++--.- .-+..++..+ ..+.|++++.||.|+++|.. .+++.+.++++.
T Consensus 59 ~w~~Yy~~~~~iIfVvDssd~~~~~ea~~~l~~ll~~~~~~~~piLIlaNK~Dl~~~~~---~~ei~~~l~l~~~~~~~~ 135 (169)
T cd04158 59 LWKHYYLNTQAVVFVVDSSHRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVAGALS---VEEMTELLSLHKLCCGRS 135 (169)
T ss_pred HHHHHCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCC---HHHHHHHHCCHHHCCCCC
T ss_conf 67875557627999998630677999999999997127537984999973556777989---999999857054526996
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHH
Q ss_conf 21000111002232006787763210
Q gi|254780321|r 163 EDALLVSAKTGEGIPLLLERIVQQLP 188 (606)
Q Consensus 163 ~~ii~vSAktG~GV~~LLd~Iv~~iP 188 (606)
-.+.+|||+||.||++.|+-+.+.+=
T Consensus 136 ~~i~~~SA~tG~Gi~e~~~WL~~~ii 161 (169)
T cd04158 136 WYIQGCDARSGMGLYEGLDWLSRQLV 161 (169)
T ss_pred EEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 29995557279598999999999998
No 175
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=99.38 E-value=2.4e-11 Score=95.68 Aligned_cols=156 Identities=19% Similarity=0.247 Sum_probs=99.7
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHCCEEEEEEEEEEEECCCCCEEEEEEEECCCCCHHHH
Q ss_conf 99980138987788999999829805444431130586779871950523279999743788438999961787300279
Q gi|254780321|r 14 FSIVAHIDHGKSTLADRFIQHCRGLTEREMSSQVLDNMDIERERGITIKAQTVRLNYTSTDAKDYQLNLIDTPGHVDFTY 93 (606)
Q Consensus 14 ~~IiaHvDhGKTTL~d~lL~~tg~i~~~~~~~~vlD~~~~EreRGITIka~~~~~~~~~~~~~~y~iNlIDTPGH~DF~~ 93 (606)
+.++|...-|||+|.-|++ .+.+.+.- ..++ |+....+.+. .+++++.++|.||+|+..|..
T Consensus 3 ivlvGd~~VGKTsli~r~~--~~~f~~~y-~~Ti----------g~d~~~k~~~-----v~~~~~~l~iwDtaGqe~f~~ 64 (170)
T cd04108 3 VIVVGDLSVGKTCLINRFC--KDVFDKNY-KATI----------GVDFEMERFE-----ILGVPFSLQLWDTAGQERFKC 64 (170)
T ss_pred EEEECCCCCCHHHHHHHHH--CCCCCCCC-CCCC----------CEEEEEEEEE-----ECCEEEEEEEEECCCCCCCCC
T ss_conf 9999989989899999996--39889972-5634----------5058999999-----999999999998999974664
Q ss_pred HHHHHHHHCCEEEEEEECCCCCCHHHHHHHHH-HHHC-C---CCEEEEECCCCCCCCCCCCH-HHHHHHHHHHHHHHHHH
Q ss_conf 99999973026899998687886558999999-9970-9---96799832678875321133-88877555322321000
Q gi|254780321|r 94 EVSRSLSACEGSLLVVDATQGVEAQTLANVYQ-AIDN-N---HEIITVLNKADLPSADPDRV-KKQIEETIGISTEDALL 167 (606)
Q Consensus 94 EV~r~l~a~dgaiLvVdA~~Gvq~QT~~~~~~-A~~~-~---l~~I~viNKiD~~~A~~e~v-~~ei~~~~g~~~~~ii~ 167 (606)
-....++-+|++|||.|.++=---+....|+. ++.. . .++++|-||+|+.+.+...+ .++..++-.--.-..+.
T Consensus 65 l~~~y~r~a~~~ilvyDvt~~~Sf~~~~~w~~~~~~~~~~~~~~i~LvgNK~DL~~~~~~~~~~~~~~~~a~~~~~~~~E 144 (170)
T cd04108 65 IASTYYRGAQAIIIVFDLTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSSPAQYALMEQDAIKLAAEMQAEYWS 144 (170)
T ss_pred CHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCEEEEEHHHHHHHHHHCCCEEEE
T ss_conf 43777327875899997898789999999999999850899982999998413798755764489999999877987999
Q ss_pred HHHHCCCCCCHHHHHHHHHH
Q ss_conf 11100223200678776321
Q gi|254780321|r 168 VSAKTGEGIPLLLERIVQQL 187 (606)
Q Consensus 168 vSAktG~GV~~LLd~Iv~~i 187 (606)
+|||+|.||+++++.|...+
T Consensus 145 ~SAk~g~nV~e~F~~ia~~~ 164 (170)
T cd04108 145 VSALSGENVREFFFRVAALT 164 (170)
T ss_pred ECCCCCCCHHHHHHHHHHHH
T ss_conf 85578818799999999999
No 176
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=99.37 E-value=2.6e-11 Score=95.37 Aligned_cols=154 Identities=23% Similarity=0.235 Sum_probs=101.6
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHCCEEEEE-EEEEEEECCCCCEEEEEEEECCCCCHH
Q ss_conf 7999801389877889999998298054444311305867798719505232-799997437884389999617873002
Q gi|254780321|r 13 NFSIVAHIDHGKSTLADRFIQHCRGLTEREMSSQVLDNMDIERERGITIKAQ-TVRLNYTSTDAKDYQLNLIDTPGHVDF 91 (606)
Q Consensus 13 N~~IiaHvDhGKTTL~d~lL~~tg~i~~~~~~~~vlD~~~~EreRGITIka~-~~~~~~~~~~~~~y~iNlIDTPGH~DF 91 (606)
-++++|...-|||+|.-|++ .|.+.+.- . -||... ...+ ..+++.+.++|.||+|+..|
T Consensus 3 KIvllGd~~VGKTsli~r~~--~~~f~~~y-~--------------pTi~~~~~k~i---~~~~~~~~l~iwDtaG~e~~ 62 (164)
T cd04175 3 KLVVLGSGGVGKSALTVQFV--QGIFVEKY-D--------------PTIEDSYRKQV---EVDGQQCMLEILDTAGTEQF 62 (164)
T ss_pred EEEEECCCCCCHHHHHHHHH--HCCCCCCC-C--------------CCEEEEEEEEE---EECCEEEEEEECCCCCCHHH
T ss_conf 99998999975999999997--09288656-8--------------84046899999---99999999985147754324
Q ss_pred HHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHH-H----CCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 799999997302689999868788655899999999-7----09967998326788753211338887755532232100
Q gi|254780321|r 92 TYEVSRSLSACEGSLLVVDATQGVEAQTLANVYQAI-D----NNHEIITVLNKADLPSADPDRVKKQIEETIGISTEDAL 166 (606)
Q Consensus 92 ~~EV~r~l~a~dgaiLvVdA~~Gvq~QT~~~~~~A~-~----~~l~~I~viNKiD~~~A~~e~v~~ei~~~~g~~~~~ii 166 (606)
..-....++-+||+|||-|.+.---=+....|+.-. . .++|+|+|-||+|+...+.- ..++.+++-.--.-..+
T Consensus 63 ~~l~~~y~~~a~~~ilvydvt~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~DL~~~r~V-~~~~~~~~a~~~~~~~~ 141 (164)
T cd04175 63 TAMRDLYMKNGQGFVLVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVV-GKEQGQNLARQWGCAFL 141 (164)
T ss_pred HHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHCCCC-CHHHHHHHHHHCCCEEE
T ss_conf 56788873578689999607877789999999999998628999639985214572220689-99999999998599999
Q ss_pred HHHHHCCCCCCHHHHHHHHHH
Q ss_conf 011100223200678776321
Q gi|254780321|r 167 LVSAKTGEGIPLLLERIVQQL 187 (606)
Q Consensus 167 ~vSAktG~GV~~LLd~Iv~~i 187 (606)
.+|||+|.||+++++.++..+
T Consensus 142 E~SAk~~~nV~~~F~~l~~~i 162 (164)
T cd04175 142 ETSAKAKINVNEIFYDLVRQI 162 (164)
T ss_pred EECCCCCCCHHHHHHHHHHHH
T ss_conf 966898817899999999986
No 177
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.37 E-value=3.9e-11 Score=94.25 Aligned_cols=155 Identities=19% Similarity=0.241 Sum_probs=98.8
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHCCEEEEEEEEEEEECCCCCEEEEEEEECCCCCHHHH
Q ss_conf 99980138987788999999829805444431130586779871950523279999743788438999961787300279
Q gi|254780321|r 14 FSIVAHIDHGKSTLADRFIQHCRGLTEREMSSQVLDNMDIERERGITIKAQTVRLNYTSTDAKDYQLNLIDTPGHVDFTY 93 (606)
Q Consensus 14 ~~IiaHvDhGKTTL~d~lL~~tg~i~~~~~~~~vlD~~~~EreRGITIka~~~~~~~~~~~~~~y~iNlIDTPGH~DF~~ 93 (606)
++++|..+.|||+|.-|++ .+.+.+.- ..++ |.....+.+ ..+++.+.++|.||+|+..|..
T Consensus 3 ivlvGd~~VGKTsli~r~~--~~~f~~~y-~~Ti----------g~d~~~k~i-----~~~~~~~~l~iwDtaG~e~~~~ 64 (172)
T cd01862 3 VIILGDSGVGKTSLMNQYV--NKKFSNQY-KATI----------GADFLTKEV-----TVDDKLVTLQIWDTAGQERFQS 64 (172)
T ss_pred EEEECCCCCCHHHHHHHHH--CCCCCCCC-CCCC----------CEEEEEEEE-----EECCEEEEEEEEECCCCHHHHH
T ss_conf 9999989978999999995--29889875-7755----------516999999-----9999999999996999831106
Q ss_pred HHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHH-H-H------CCCCEEEEECCCCCCCCCCCCHHHHHHHHHH-HHHHH
Q ss_conf 999999730268999986878865589999999-9-7------0996799832678875321133888775553-22321
Q gi|254780321|r 94 EVSRSLSACEGSLLVVDATQGVEAQTLANVYQA-I-D------NNHEIITVLNKADLPSADPDRVKKQIEETIG-ISTED 164 (606)
Q Consensus 94 EV~r~l~a~dgaiLvVdA~~Gvq~QT~~~~~~A-~-~------~~l~~I~viNKiD~~~A~~e~v~~ei~~~~g-~~~~~ 164 (606)
-.....+-+|+++||.|-+.---=+....|+.- . . ..+|+|+|-||+|++.-+. -..++.+++.. ...-.
T Consensus 65 l~~~~~~~a~~~ilvydvt~~~Sf~~l~~w~~~~~~~~~~~~~~~~piilvgNK~Dl~~~r~-V~~~e~~~~a~~~~~~~ 143 (172)
T cd01862 65 LGVAFYRGADCCVLVYDVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQ-VSTKKAQQWCQSNGNIP 143 (172)
T ss_pred HHHHHHHHCCEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCHHHCCC-CCHHHHHHHHHHCCCCE
T ss_conf 88998652757999933899899999999999999972767765763899963368364189-99999999999769978
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHH
Q ss_conf 00011100223200678776321
Q gi|254780321|r 165 ALLVSAKTGEGIPLLLERIVQQL 187 (606)
Q Consensus 165 ii~vSAktG~GV~~LLd~Iv~~i 187 (606)
.+.+||++|.||+++++.++..+
T Consensus 144 ~~E~SAk~~~nV~e~F~~l~~~~ 166 (172)
T cd01862 144 YFETSAKEAINVEQAFETIARKA 166 (172)
T ss_pred EEEECCCCCCCHHHHHHHHHHHH
T ss_conf 99975267919899999999999
No 178
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.37 E-value=2.3e-11 Score=95.74 Aligned_cols=159 Identities=18% Similarity=0.163 Sum_probs=102.3
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHCCEEEEEEEEEEEECCCCCEEEEEEEECCCCCHHHH
Q ss_conf 99980138987788999999829805444431130586779871950523279999743788438999961787300279
Q gi|254780321|r 14 FSIVAHIDHGKSTLADRFIQHCRGLTEREMSSQVLDNMDIERERGITIKAQTVRLNYTSTDAKDYQLNLIDTPGHVDFTY 93 (606)
Q Consensus 14 ~~IiaHvDhGKTTL~d~lL~~tg~i~~~~~~~~vlD~~~~EreRGITIka~~~~~~~~~~~~~~y~iNlIDTPGH~DF~~ 93 (606)
++++|-.+-|||+|.-|+. .|.+.+.- .-||... ........+++.+.++|.||+|+.+|..
T Consensus 3 ivlvGd~~VGKTsli~r~~--~~~F~~~~---------------~pTi~~~-~~~~~~~~~~~~v~l~iwDtaG~e~~~~ 64 (187)
T cd04132 3 IVVVGDGGCGKTCLLIVYS--QGKFPEEY---------------VPTVFEN-YVTNIQGPNGKIIELALWDTAGQEEYDR 64 (187)
T ss_pred EEEECCCCCCHHHHHHHHH--HCCCCCCC---------------CCCEEEE-EEEEEEEECCEEEEEEEEECCCCCCCCC
T ss_conf 9999949976999999996--39899975---------------8966479-9999995499899999996999711053
Q ss_pred HHHHHHHHCCEEEEEEECCCCCCHHHHH-HHHHHHH---CCCCEEEEECCCCCCCCCC--CCH-HHHHHHHHH-HHHHHH
Q ss_conf 9999997302689999868788655899-9999997---0996799832678875321--133-888775553-223210
Q gi|254780321|r 94 EVSRSLSACEGSLLVVDATQGVEAQTLA-NVYQAID---NNHEIITVLNKADLPSADP--DRV-KKQIEETIG-ISTEDA 165 (606)
Q Consensus 94 EV~r~l~a~dgaiLvVdA~~Gvq~QT~~-~~~~A~~---~~l~~I~viNKiD~~~A~~--e~v-~~ei~~~~g-~~~~~i 165 (606)
-.....+-++++|||.|.+.=--=+-.. .|..-.. .++|+|+|-||.|+..-+. ..+ .++.+++.. +.....
T Consensus 65 l~~~~~~~a~~~ilvydit~~~Sf~~i~~~W~~~i~~~~~~~piilVgnK~DL~~~~~~~~~v~~e~~~~~a~~~~~~~y 144 (187)
T cd04132 65 LRPLSYPDVDVLLICYAVDNPTSLDNVEDKWFPEVNHFCPGTPIMLVGLKTDLRKDKNLDRKVTPAQAESVAKKQGAFAY 144 (187)
T ss_pred CHHHHHHHCCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHCCCCCCCHHHHHHHHHHCCCCEE
T ss_conf 43445300348889503687677999999999999986899997999987221221223765789999999998599789
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHCC
Q ss_conf 0011100223200678776321000
Q gi|254780321|r 166 LLVSAKTGEGIPLLLERIVQQLPSP 190 (606)
Q Consensus 166 i~vSAktG~GV~~LLd~Iv~~iP~P 190 (606)
+.+|||+|.||+++++.+++.+=-+
T Consensus 145 ~EtSAk~g~nV~e~F~~l~~~il~~ 169 (187)
T cd04132 145 LECSAKTMENVEEVFDTAIEEALKK 169 (187)
T ss_pred EEECCCCCCCHHHHHHHHHHHHHHH
T ss_conf 9957688929899999999999854
No 179
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=99.37 E-value=2.8e-11 Score=95.19 Aligned_cols=151 Identities=23% Similarity=0.284 Sum_probs=100.8
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHCCEEEEEEEEEEEECCCCCEEEEEEEECCCCCHHH
Q ss_conf 79998013898778899999982980544443113058677987195052327999974378843899996178730027
Q gi|254780321|r 13 NFSIVAHIDHGKSTLADRFIQHCRGLTEREMSSQVLDNMDIERERGITIKAQTVRLNYTSTDAKDYQLNLIDTPGHVDFT 92 (606)
Q Consensus 13 N~~IiaHvDhGKTTL~d~lL~~tg~i~~~~~~~~vlD~~~~EreRGITIka~~~~~~~~~~~~~~y~iNlIDTPGH~DF~ 92 (606)
-+.++|..+-|||+|.-|++ .|.+.+.- ..++-| ...+. + ..+++.+.+++.||+|+..|.
T Consensus 3 KivllGd~~VGKTsli~r~~--~~~f~~~y-~pTi~~-----------~~~k~--i---~~~~~~~~l~iwDtaG~e~~~ 63 (163)
T cd04176 3 KVVVLGSGGVGKSALTVQFV--SGTFIEKY-DPTIED-----------FYRKE--I---EVDSSPSVLEILDTAGTEQFA 63 (163)
T ss_pred EEEEECCCCCCHHHHHHHHH--HCCCCCCC-CCCCCC-----------EEEEE--E---EECCEEEEEEEEECCCCHHHH
T ss_conf 99998999978999999997--09899755-885233-----------16799--9---988899999999898854256
Q ss_pred HHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHH-H----CCCCEEEEECCCCCCCCCCCCH-HHHHH---HHHHHHHH
Q ss_conf 99999997302689999868788655899999999-7----0996799832678875321133-88877---55532232
Q gi|254780321|r 93 YEVSRSLSACEGSLLVVDATQGVEAQTLANVYQAI-D----NNHEIITVLNKADLPSADPDRV-KKQIE---ETIGISTE 163 (606)
Q Consensus 93 ~EV~r~l~a~dgaiLvVdA~~Gvq~QT~~~~~~A~-~----~~l~~I~viNKiD~~~A~~e~v-~~ei~---~~~g~~~~ 163 (606)
.-....++-+|+++||.|.+.---=+....|+.-+ + .++|+|+|-||+|++..+ .| .+|.+ +.+++
T Consensus 64 ~~~~~~~~~a~~~ilvydit~~~Sf~~l~~~~~~i~~~~~~~~~piilVgNK~DL~~~r--~V~~~e~~~~a~~~~~--- 138 (163)
T cd04176 64 SMRDLYIKNGQGFIVVYSLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLESER--EVSSAEGRALAEEWGC--- 138 (163)
T ss_pred HHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCC--CCCHHHHHHHHHHCCC---
T ss_conf 78899855786568971279889999999999999997389996399974313400127--6999999999998599---
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHH
Q ss_conf 100011100223200678776321
Q gi|254780321|r 164 DALLVSAKTGEGIPLLLERIVQQL 187 (606)
Q Consensus 164 ~ii~vSAktG~GV~~LLd~Iv~~i 187 (606)
..+.+||++|.||+++++.++..+
T Consensus 139 ~~~E~SAk~~~nV~~~F~~l~~~i 162 (163)
T cd04176 139 PFMETSAKSKTMVNELFAEIVRQM 162 (163)
T ss_pred EEEEECCCCCCCHHHHHHHHHHHH
T ss_conf 899985687817799999999953
No 180
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.37 E-value=1.5e-11 Score=97.11 Aligned_cols=157 Identities=19% Similarity=0.241 Sum_probs=100.9
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHCCEEEEEEEEEEEECCCCCEEEEEEEECCCCCHHH
Q ss_conf 79998013898778899999982980544443113058677987195052327999974378843899996178730027
Q gi|254780321|r 13 NFSIVAHIDHGKSTLADRFIQHCRGLTEREMSSQVLDNMDIERERGITIKAQTVRLNYTSTDAKDYQLNLIDTPGHVDFT 92 (606)
Q Consensus 13 N~~IiaHvDhGKTTL~d~lL~~tg~i~~~~~~~~vlD~~~~EreRGITIka~~~~~~~~~~~~~~y~iNlIDTPGH~DF~ 92 (606)
-++++|-.+.|||+|.-|++ .|.+.+.- ..++ |-+. .+ .+ ..+++.+.++|.||+|+..|.
T Consensus 3 KivlvGd~~VGKTsli~rf~--~~~f~~~y-~pTi----------~~~~-~k--~i---~i~~~~~~l~iwDtaG~e~~~ 63 (168)
T cd04177 3 KIVVLGAGGVGKSALTVQFV--QNVFIESY-DPTI----------EDSY-RK--QV---EIDGRQCDLEILDTAGTEQFT 63 (168)
T ss_pred EEEEECCCCCCHHHHHHHHH--HCCCCCCC-CCCC----------CCEE-EE--EE---EECCEEEEEEEEECCCCCCCC
T ss_conf 99998999977999999996--19389865-8833----------3159-99--99---999999999998278862333
Q ss_pred HHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHH-----HCCCCEEEEECCCCCCCCCCCCHHHHHHHHHH-HHHHHHH
Q ss_conf 99999997302689999868788655899999999-----70996799832678875321133888775553-2232100
Q gi|254780321|r 93 YEVSRSLSACEGSLLVVDATQGVEAQTLANVYQAI-----DNNHEIITVLNKADLPSADPDRVKKQIEETIG-ISTEDAL 166 (606)
Q Consensus 93 ~EV~r~l~a~dgaiLvVdA~~Gvq~QT~~~~~~A~-----~~~l~~I~viNKiD~~~A~~e~v~~ei~~~~g-~~~~~ii 166 (606)
.-....++-++|++||.|.++----+....|+.-. ..++|+++|-||+|+.+.+.-. .+|..++.. +..-..+
T Consensus 64 ~~~~~~~~~a~~~ilvydvt~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~DL~~~r~v~-~~e~~~~a~~~~~~~~~ 142 (168)
T cd04177 64 AMRELYIKSGQGFLLVYSVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLEDDRQVS-REDGVSLSQQWGNVPFY 142 (168)
T ss_pred CCHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCHHHCCCCC-HHHHHHHHHHCCCCEEE
T ss_conf 45154512686679853689888999999999999985178887489887314612137689-99999999974997799
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHC
Q ss_conf 01110022320067877632100
Q gi|254780321|r 167 LVSAKTGEGIPLLLERIVQQLPS 189 (606)
Q Consensus 167 ~vSAktG~GV~~LLd~Iv~~iP~ 189 (606)
.+|||+|.||+++++.++..+=+
T Consensus 143 E~SAk~~~nV~e~F~~l~~~il~ 165 (168)
T cd04177 143 ETSARKRTNVDEVFIDLVRQIIC 165 (168)
T ss_pred EECCCCCCCHHHHHHHHHHHHHH
T ss_conf 96248784689999999999999
No 181
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.37 E-value=2e-11 Score=96.11 Aligned_cols=152 Identities=16% Similarity=0.243 Sum_probs=104.4
Q ss_pred HHCEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHCCEEEEEEEEEEEECCCCCEEEEEEEECCCC
Q ss_conf 25317999801389877889999998298054444311305867798719505232799997437884389999617873
Q gi|254780321|r 9 SRIRNFSIVAHIDHGKSTLADRFIQHCRGLTEREMSSQVLDNMDIERERGITIKAQTVRLNYTSTDAKDYQLNLIDTPGH 88 (606)
Q Consensus 9 ~~IRN~~IiaHvDhGKTTL~d~lL~~tg~i~~~~~~~~vlD~~~~EreRGITIka~~~~~~~~~~~~~~y~iNlIDTPGH 88 (606)
++-+++-|+|=-.+|||||..+|. .+.+.. .. -|+..+..++.| +++.+++.|++|+
T Consensus 17 ~k~~kIlilGld~aGKTTil~~l~--~~~~~~---------~~-------PT~Gfn~e~i~~-----~~~~~~~wDvgG~ 73 (190)
T cd00879 17 NKEAKILFLGLDNAGKTTLLHMLK--DDRLAQ---------HV-------PTLHPTSEELTI-----GNIKFKTFDLGGH 73 (190)
T ss_pred CCCCEEEEEECCCCCHHHHHHHHH--CCCCCE---------EC-------CCCCCCEEEEEE-----CCEEEEEEECCCC
T ss_conf 770489999069998899999980--799531---------52-------655874599998-----9999999989998
Q ss_pred CHHHHHHHHHHHHCCEEEEEEECCCCC-CHHHHHHHHHHHH----CCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHH--
Q ss_conf 002799999997302689999868788-6558999999997----099679983267887532113388877555322--
Q gi|254780321|r 89 VDFTYEVSRSLSACEGSLLVVDATQGV-EAQTLANVYQAID----NNHEIITVLNKADLPSADPDRVKKQIEETIGIS-- 161 (606)
Q Consensus 89 ~DF~~EV~r~l~a~dgaiLvVdA~~Gv-q~QT~~~~~~A~~----~~l~~I~viNKiD~~~A~~e~v~~ei~~~~g~~-- 161 (606)
.-|..--.....-+||.|+|||+++=- ..+.+..++..+. .++|++++.||.|+|+|-. .+||.+.++++
T Consensus 74 ~~~R~lW~~Y~~~~~~iIfVVDssD~~r~~eak~~L~~lL~~~~l~~~PlLIlaNK~Dl~~a~~---~~ei~~~L~L~~~ 150 (190)
T cd00879 74 EQARRLWKDYFPEVDGIVFLVDAADPERFQESKEELDSLLSDEELANVPFLILGNKIDLPGAVS---EEELRQALGLYGT 150 (190)
T ss_pred CCCCCCHHHHHHCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCC---HHHHHHHCCCCCC
T ss_conf 4555438888431137999997767789999999999998555006980899986667767989---9999988398420
Q ss_pred --------------HHHHHHHHHHCCCCCCHHHHHHHHH
Q ss_conf --------------3210001110022320067877632
Q gi|254780321|r 162 --------------TEDALLVSAKTGEGIPLLLERIVQQ 186 (606)
Q Consensus 162 --------------~~~ii~vSAktG~GV~~LLd~Iv~~ 186 (606)
+-.+.+|||++|.|+++-|+=+.+.
T Consensus 151 ~~~~~~~~~~~~~r~~~i~~csA~tG~Gl~egl~WLs~~ 189 (190)
T cd00879 151 TTGKGVSLKVSGIRPIEVFMCSVVKRQGYGEAFRWLSQY 189 (190)
T ss_pred CCCCCCCCCCCCCCCEEEEEEEEECCCCHHHHHHHHHHH
T ss_conf 155443345457761499965506796828999999854
No 182
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.37 E-value=3.2e-11 Score=94.85 Aligned_cols=154 Identities=20% Similarity=0.198 Sum_probs=100.0
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHCCEEEEEEEEEEEECCCCCEEEEEEEECCCCCHHHH
Q ss_conf 99980138987788999999829805444431130586779871950523279999743788438999961787300279
Q gi|254780321|r 14 FSIVAHIDHGKSTLADRFIQHCRGLTEREMSSQVLDNMDIERERGITIKAQTVRLNYTSTDAKDYQLNLIDTPGHVDFTY 93 (606)
Q Consensus 14 ~~IiaHvDhGKTTL~d~lL~~tg~i~~~~~~~~vlD~~~~EreRGITIka~~~~~~~~~~~~~~y~iNlIDTPGH~DF~~ 93 (606)
+++||..+-|||+|.-|++ .+.+.+.- --||-.. ..-.+ ..+++.+.++|.||.|+..|..
T Consensus 2 ivviGd~gVGKTsli~r~~--~~~F~~~y---------------~pTi~~~-~~k~~-~~~~~~~~l~iwDtaG~e~~~~ 62 (190)
T cd04144 2 LVVLGDGGVGKTALTIQLC--LNHFVETY---------------DPTIEDS-YRKQV-VVDGQPCMLEVLDTAGQEEYTA 62 (190)
T ss_pred EEEECCCCCCHHHHHHHHH--HCCCCCCC---------------CCCCCEE-EEEEE-EECCEEEEEEEEECCCCCCHHH
T ss_conf 8999989987899999996--29799886---------------9972478-89999-9999999999998999731167
Q ss_pred HHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHH----H---CCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 9999997302689999868788655899999999----7---09967998326788753211338887755532232100
Q gi|254780321|r 94 EVSRSLSACEGSLLVVDATQGVEAQTLANVYQAI----D---NNHEIITVLNKADLPSADPDRVKKQIEETIGISTEDAL 166 (606)
Q Consensus 94 EV~r~l~a~dgaiLvVdA~~Gvq~QT~~~~~~A~----~---~~l~~I~viNKiD~~~A~~e~v~~ei~~~~g~~~~~ii 166 (606)
-....++-+|++|||.|.++=--=+....|+.-+ . .++|+|+|=||+|+.+.+. --.+|.+++-.--.-..+
T Consensus 63 l~~~~~r~a~~~ilVydvtd~~SF~~l~~w~~~i~~~~~~~~~~~piiLVGNK~Dl~~~r~-V~~~e~~~~a~~~~~~~~ 141 (190)
T cd04144 63 LRDQWIREGEGFILVYSITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVYERE-VSTEEGAALARRLGCEFI 141 (190)
T ss_pred HHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCHHHCCC-CCHHHHHHHHHHCCCEEE
T ss_conf 8899823676589997279778999999999999998533799952895145535033057-899999999998099899
Q ss_pred HHHHHCCCCCCHHHHHHHHHH
Q ss_conf 011100223200678776321
Q gi|254780321|r 167 LVSAKTGEGIPLLLERIVQQL 187 (606)
Q Consensus 167 ~vSAktG~GV~~LLd~Iv~~i 187 (606)
.+||++|.||+++++.++..+
T Consensus 142 E~SAk~~~nV~e~F~~l~~~i 162 (190)
T cd04144 142 EASAKTNVNVERAFYTLVRAL 162 (190)
T ss_pred EECCCCCCCHHHHHHHHHHHH
T ss_conf 973588809799999999999
No 183
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=99.36 E-value=2.8e-11 Score=95.24 Aligned_cols=154 Identities=23% Similarity=0.226 Sum_probs=101.8
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHCCEEEEE-EEEEEEECCCCCEEEEEEEECCCCCHH
Q ss_conf 7999801389877889999998298054444311305867798719505232-799997437884389999617873002
Q gi|254780321|r 13 NFSIVAHIDHGKSTLADRFIQHCRGLTEREMSSQVLDNMDIERERGITIKAQ-TVRLNYTSTDAKDYQLNLIDTPGHVDF 91 (606)
Q Consensus 13 N~~IiaHvDhGKTTL~d~lL~~tg~i~~~~~~~~vlD~~~~EreRGITIka~-~~~~~~~~~~~~~y~iNlIDTPGH~DF 91 (606)
-++++|-..-|||+|..|++ .+.+...- . -||... .-.+ ..+++.+.++|.||+|+.+|
T Consensus 4 Kiv~lGd~~VGKTsli~r~~--~~~f~~~y-~--------------~Ti~~~~~k~~---~~~~~~~~l~iwDtaG~e~~ 63 (164)
T cd04145 4 KLVVVGGGGVGKSALTIQFI--QSYFVTDY-D--------------PTIEDSYTKQC---EIDGQWAILDILDTAGQEEF 63 (164)
T ss_pred EEEEECCCCCCHHHHHHHHH--CCCCCCCC-C--------------CCEEEEEEEEE---EECCEEEEEEEEECCCCCCC
T ss_conf 99999999978899999998--09898756-7--------------84135899999---99999999999989886031
Q ss_pred HHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHH-H----CCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 799999997302689999868788655899999999-7----09967998326788753211338887755532232100
Q gi|254780321|r 92 TYEVSRSLSACEGSLLVVDATQGVEAQTLANVYQAI-D----NNHEIITVLNKADLPSADPDRVKKQIEETIGISTEDAL 166 (606)
Q Consensus 92 ~~EV~r~l~a~dgaiLvVdA~~Gvq~QT~~~~~~A~-~----~~l~~I~viNKiD~~~A~~e~v~~ei~~~~g~~~~~ii 166 (606)
..-....++-+||++||.|.++---=+....|+.-. + ..+|+|+|-||+|+.+-+. -..+|.+++..--.-..+
T Consensus 64 ~~~~~~~~~~a~~~ilvydi~~~~Sf~~~~~~~~~i~~~~~~~~~piilVgNK~DL~~~r~-Vs~~e~~~~a~~~~~~~~ 142 (164)
T cd04145 64 SAMREQYMRTGEGFLLVFSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLEHQRK-VSREEGQELARKLKIPYI 142 (164)
T ss_pred CHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCHHHHCC-CCHHHHHHHHHHCCCEEE
T ss_conf 2567987346787468985673543999999999999861887775265303457354088-999999999998199899
Q ss_pred HHHHHCCCCCCHHHHHHHHHH
Q ss_conf 011100223200678776321
Q gi|254780321|r 167 LVSAKTGEGIPLLLERIVQQL 187 (606)
Q Consensus 167 ~vSAktG~GV~~LLd~Iv~~i 187 (606)
.+|||+|.||+++++.++..+
T Consensus 143 E~SAk~~~nV~e~F~~l~~~I 163 (164)
T cd04145 143 ETSAKDRLNVDKAFHDLVRVI 163 (164)
T ss_pred EECCCCCCCHHHHHHHHHHHH
T ss_conf 985486827799999999975
No 184
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=99.36 E-value=3e-11 Score=94.96 Aligned_cols=156 Identities=22% Similarity=0.217 Sum_probs=99.6
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHCCEEEEEEEEEEEECCCCCEEEEEEEECCCCCHHH
Q ss_conf 79998013898778899999982980544443113058677987195052327999974378843899996178730027
Q gi|254780321|r 13 NFSIVAHIDHGKSTLADRFIQHCRGLTEREMSSQVLDNMDIERERGITIKAQTVRLNYTSTDAKDYQLNLIDTPGHVDFT 92 (606)
Q Consensus 13 N~~IiaHvDhGKTTL~d~lL~~tg~i~~~~~~~~vlD~~~~EreRGITIka~~~~~~~~~~~~~~y~iNlIDTPGH~DF~ 92 (606)
-+.++|..+.|||+|.-|++ .+.+.... -.||-....+-. ...+++.++++|.||+|+..|.
T Consensus 6 KivlvGd~~VGKTsli~r~~--~~~f~~~~---------------~~Tig~~~~~k~-i~~~~~~~~l~iwDt~G~e~~~ 67 (168)
T cd01866 6 KYIIIGDTGVGKSCLLLQFT--DKRFQPVH---------------DLTIGVEFGARM-ITIDGKQIKLQIWDTAGQESFR 67 (168)
T ss_pred EEEEECCCCCCHHHHHHHHH--CCCCCCCC---------------CCCCEEEEEEEE-EEECCEEEEEEEEECCCCCCCC
T ss_conf 99999989978899999991--09899987---------------898507889999-9999999999999799973346
Q ss_pred HHHHHHHHHCCEEEEEEECCCCCCHHHHHHHH-HHHH---CCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999997302689999868788655899999-9997---0996799832678875321133888775553223210001
Q gi|254780321|r 93 YEVSRSLSACEGSLLVVDATQGVEAQTLANVY-QAID---NNHEIITVLNKADLPSADPDRVKKQIEETIGISTEDALLV 168 (606)
Q Consensus 93 ~EV~r~l~a~dgaiLvVdA~~Gvq~QT~~~~~-~A~~---~~l~~I~viNKiD~~~A~~e~v~~ei~~~~g~~~~~ii~v 168 (606)
.-....++-++++|||.|.+.---=+....|. .+.+ .+.++|+|=||+|++.-+. --.+|.+++..-..-..+.+
T Consensus 68 ~l~~~~~~~a~~~ilvydit~~~Sf~~l~~w~~~i~~~~~~~~~iiLVGNK~DL~~~r~-V~~~e~~~~a~~~~~~~~E~ 146 (168)
T cd01866 68 SITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSNSNMTIMLIGNKCDLESRRE-VSYEEGEAFAKEHGLIFMET 146 (168)
T ss_pred CCHHHHHHHHCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCHHHCCC-CCHHHHHHHHHHCCCEEEEE
T ss_conf 25588866436899934458779999999999999986799965998434235454077-89999999999869999997
Q ss_pred HHHCCCCCCHHHHHHHHHH
Q ss_conf 1100223200678776321
Q gi|254780321|r 169 SAKTGEGIPLLLERIVQQL 187 (606)
Q Consensus 169 SAktG~GV~~LLd~Iv~~i 187 (606)
|||+|.||+++++.++..+
T Consensus 147 SAk~~~nV~~~F~~l~~~i 165 (168)
T cd01866 147 SAKTASNVEEAFINTAKEI 165 (168)
T ss_pred CCCCCCCHHHHHHHHHHHH
T ss_conf 6788808899999999999
No 185
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=99.36 E-value=2.7e-11 Score=95.30 Aligned_cols=155 Identities=19% Similarity=0.235 Sum_probs=101.6
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHCCEEEEEEEEEEEECCCCCEEEEEEEECCCCCHHHH
Q ss_conf 99980138987788999999829805444431130586779871950523279999743788438999961787300279
Q gi|254780321|r 14 FSIVAHIDHGKSTLADRFIQHCRGLTEREMSSQVLDNMDIERERGITIKAQTVRLNYTSTDAKDYQLNLIDTPGHVDFTY 93 (606)
Q Consensus 14 ~~IiaHvDhGKTTL~d~lL~~tg~i~~~~~~~~vlD~~~~EreRGITIka~~~~~~~~~~~~~~y~iNlIDTPGH~DF~~ 93 (606)
+.++|...-|||+|.-|++ .+.+..... .++ |+....+.+ ..+++.+.++|.||+|...|..
T Consensus 3 IvllGd~~VGKTsli~r~~--~~~f~~~~~-~Ti----------g~~~~~k~v-----~~~~~~i~l~iwDtaGqe~~~~ 64 (161)
T cd04117 3 LLLIGDSGVGKTCLLCRFT--DNEFHSSHI-STI----------GVDFKMKTI-----EVDGIKVRIQIWDTAGQERYQT 64 (161)
T ss_pred EEEECCCCCCHHHHHHHHH--CCCCCCCCC-CCC----------EEEEEEEEE-----EECCEEEEEEEEECCCCCCCCC
T ss_conf 9999949985899999994--299899878-872----------089889999-----9999999999997999602363
Q ss_pred HHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHH-H---CCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999997302689999868788655899999999-7---09967998326788753211338887755532232100011
Q gi|254780321|r 94 EVSRSLSACEGSLLVVDATQGVEAQTLANVYQAI-D---NNHEIITVLNKADLPSADPDRVKKQIEETIGISTEDALLVS 169 (606)
Q Consensus 94 EV~r~l~a~dgaiLvVdA~~Gvq~QT~~~~~~A~-~---~~l~~I~viNKiD~~~A~~e~v~~ei~~~~g~~~~~ii~vS 169 (606)
-+...++-+++++||.|-+.=--=+.+..|..-. + .+.++|+|-||+|+...+. -..+|..++..--.-..+.+|
T Consensus 65 ~~~~y~r~a~~~ilvyDvt~~~Sf~~l~~w~~~i~~~~~~~~~~ilVgNK~Dl~~~r~-v~~~~~~~~a~~~~~~~~etS 143 (161)
T cd04117 65 ITKQYYRRAQGIFLVYDISSERSYQHIMKWVSDVDEYAPEGVQKILIGNKADEEQKRQ-VGDEQGNKLAKEYGMDFFETS 143 (161)
T ss_pred CHHHHHHHHCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCHHHCCC-CCHHHHHHHHHHCCCEEEEEC
T ss_conf 5588876416889961489889999999999999987899864999873278786277-999999999998699799967
Q ss_pred HHCCCCCCHHHHHHHHHH
Q ss_conf 100223200678776321
Q gi|254780321|r 170 AKTGEGIPLLLERIVQQL 187 (606)
Q Consensus 170 AktG~GV~~LLd~Iv~~i 187 (606)
||+|.||+++++.|.+.+
T Consensus 144 Ak~~~nV~e~F~~l~~~i 161 (161)
T cd04117 144 ACTNSNIKESFTRLTELV 161 (161)
T ss_pred CCCCCCHHHHHHHHHHHC
T ss_conf 789829899999999649
No 186
>KOG1143 consensus
Probab=99.35 E-value=6.2e-12 Score=99.61 Aligned_cols=250 Identities=20% Similarity=0.268 Sum_probs=153.2
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEE-ECCCHHHHHHCCEEEEEEEEEE---------EECC-------CC
Q ss_conf 79998013898778899999982980544443113-0586779871950523279999---------7437-------88
Q gi|254780321|r 13 NFSIVAHIDHGKSTLADRFIQHCRGLTEREMSSQV-LDNMDIERERGITIKAQTVRLN---------YTST-------DA 75 (606)
Q Consensus 13 N~~IiaHvDhGKTTL~d~lL~~tg~i~~~~~~~~v-lD~~~~EreRGITIka~~~~~~---------~~~~-------~~ 75 (606)
-+|++|..|.|||||..-|- -|-++......++ +=..+-|-.-|-|-.-..-.+. |... +.
T Consensus 169 RvAVlGg~D~GKSTLlGVLT--QgeLDnG~GrARln~FRh~HEiqsGrTSsis~evlGFd~~g~vVNY~~~~taEEi~e~ 246 (591)
T KOG1143 169 RVAVLGGCDVGKSTLLGVLT--QGELDNGNGRARLNIFRHPHEIQSGRTSSISNEVLGFDNRGKVVNYAQNMTAEEIVEK 246 (591)
T ss_pred EEEEECCCCCCCCEEEEEEE--CCCCCCCCCEEEEEHHCCHHHHCCCCCCCCCHHCCCCCCCCCCCCHHHCCCHHHHHHH
T ss_conf 99985276567223665541--0531478870663011063654057632001010053653430022320459998741
Q ss_pred CEEEEEEEECCCCCHHHHHHHHHHHH--CCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCC-CCCCHHH
Q ss_conf 43899996178730027999999973--02689999868788655899999999709967998326788753-2113388
Q gi|254780321|r 76 KDYQLNLIDTPGHVDFTYEVSRSLSA--CEGSLLVVDATQGVEAQTLANVYQAIDNNHEIITVLNKADLPSA-DPDRVKK 152 (606)
Q Consensus 76 ~~y~iNlIDTPGH~DF~~EV~r~l~a--~dgaiLvVdA~~Gvq~QT~~~~~~A~~~~l~~I~viNKiD~~~A-~~e~v~~ 152 (606)
-...+.|||--||.-+.--...+|.. -+-|+|||+|..|+---|++|+-++...++|..+++.|||+.+- -.++..+
T Consensus 247 SSKlvTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi~~tTrEHLgl~~AL~iPfFvlvtK~Dl~~~~~~~~tv~ 326 (591)
T KOG1143 247 SSKLVTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADRGITWTTREHLGLIAALNIPFFVLVTKMDLVDRQGLKKTVK 326 (591)
T ss_pred HCCEEEEEECCCCHHHHEEEEEECCCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHCCCEEEEEEEECCCCCHHHHHHHH
T ss_conf 02338876504422313045220036798627999986888765408888899971787699998401236321789999
Q ss_pred HHHHHH---HHH--------H------------HH---HHHHHHHCCCCCCHHHHHHHHHHHCCCCHHHHHC---CCCCC
Q ss_conf 877555---322--------3------------21---0001110022320067877632100011112201---23310
Q gi|254780321|r 153 QIEETI---GIS--------T------------ED---ALLVSAKTGEGIPLLLERIVQQLPSPTSPEGANA---PLKAL 203 (606)
Q Consensus 153 ei~~~~---g~~--------~------------~~---ii~vSAktG~GV~~LLd~Iv~~iP~P~~~~~~~~---Pl~al 203 (606)
|+..++ |+. . .+ |+.+|..+|.|.. ||....+.+||-......+. ...-+
T Consensus 327 ~l~nll~~~Gc~kvp~~Vt~~ddAv~Aaq~~~s~nivPif~vSsVsGegl~-ll~~fLn~Lsp~~~~~e~~~L~q~~~eF 405 (591)
T KOG1143 327 DLSNLLAKAGCTKVPKRVTTKDDAVKAAQELCSGNIVPIFAVSSVSGEGLR-LLRTFLNCLSPAGTAEERIQLVQLPAEF 405 (591)
T ss_pred HHHHHHHHCCCCCCCEEEECHHHHHHHHHHHCCCCCEEEEEEEECCCCCHH-HHHHHHHHCCCCCCHHHHHHHHCCCCEE
T ss_conf 999887423763263485050788788887536881148998504763266-9999986438767727799986676226
Q ss_pred CCCEEEC-CCCCEEEEEEECCCCCCCCCEEEEECCC-CCCCCCCCCCCCCCEEEEHHCCCCCHH
Q ss_conf 1210114-7572599998169873558458873355-642101222335541240101247123
Q gi|254780321|r 204 LIDSWYN-SYLGVMVLVRIINGQLTKGQSIRLMGTN-AKYQVERIGILTPKMIDIEALYPGEIG 265 (606)
Q Consensus 204 Vfds~~D-~~~G~I~~~RV~sG~lk~Gd~I~~~~~g-~~~~v~~ig~~~~~~~~v~~l~aGdVG 265 (606)
-.|-.|. |++|.++-+-+.+|.+..|+.+.+-+.. ..+.--.++..+-.+.++..+.||+..
T Consensus 406 qvdEiy~Vp~VG~VVGG~Ls~G~l~Eg~~~~vGP~~DG~F~~itV~sI~Rnr~acrvvraGqaA 469 (591)
T KOG1143 406 QVDEIYNVPHVGQVVGGMLSEGQLHEGADVLVGPMKDGTFEKITVGSIRRNRQACRVVRAGQAA 469 (591)
T ss_pred EHHHEECCCCCCCCCCCEEEECEECCCCEEEEECCCCCCEEEEEEEEEECCCCCEEEECCCCCE
T ss_conf 6747056776565031154223232686057504799834678862364166420263276311
No 187
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.35 E-value=4.7e-11 Score=93.66 Aligned_cols=154 Identities=20% Similarity=0.235 Sum_probs=96.1
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHCCEEEEEEEEEEEECCCCCEEEEEEEECCCCCHHH
Q ss_conf 79998013898778899999982980544443113058677987195052327999974378843899996178730027
Q gi|254780321|r 13 NFSIVAHIDHGKSTLADRFIQHCRGLTEREMSSQVLDNMDIERERGITIKAQTVRLNYTSTDAKDYQLNLIDTPGHVDFT 92 (606)
Q Consensus 13 N~~IiaHvDhGKTTL~d~lL~~tg~i~~~~~~~~vlD~~~~EreRGITIka~~~~~~~~~~~~~~y~iNlIDTPGH~DF~ 92 (606)
-++++|..+-|||+|.-|++ .+.+.... ..++.| .....+ ..+++.+.++|.||+|+.+|.
T Consensus 2 Ki~llGd~~VGKTsli~r~~--~~~f~~~y-~~Ti~~-------------~~~~~~---~~~~~~~~l~iwDt~G~e~~~ 62 (171)
T cd00157 2 KIVVVGDGAVGKTCLLISYT--TGKFPTEY-VPTVFD-------------NYSATV---TVDGKQVNLGLWDTAGQEEYD 62 (171)
T ss_pred EEEEECCCCCCHHHHHHHHH--CCCCCCCC-CCEEEE-------------EEEEEE---EECCEEEEEEEEECCCCCCCC
T ss_conf 89999999966999999996--29999875-880346-------------668999---999999999999899871024
Q ss_pred HHHHHHHHHCCEEEEEEECCCCCCHHHHHH-HHHHHH---CCCCEEEEECCCCCCCCCC---------CCH-HHHHHHHH
Q ss_conf 999999973026899998687886558999-999997---0996799832678875321---------133-88877555
Q gi|254780321|r 93 YEVSRSLSACEGSLLVVDATQGVEAQTLAN-VYQAID---NNHEIITVLNKADLPSADP---------DRV-KKQIEETI 158 (606)
Q Consensus 93 ~EV~r~l~a~dgaiLvVdA~~Gvq~QT~~~-~~~A~~---~~l~~I~viNKiD~~~A~~---------e~v-~~ei~~~~ 158 (606)
.-....++-++++|||.|.++---=+.... |..-+. .+.|+|+|-||+|+.+.+. ..| .+|.+++-
T Consensus 63 ~~~~~~~~~a~~~ilvydit~~~Sf~~i~~~w~~~i~~~~~~~piilvgNK~DL~~~~~~~~~~~~~~r~V~~~e~~~~a 142 (171)
T cd00157 63 RLRPLSYPNTDVFLICFSVDSPSSFENVKTKWIPEIRHYCPNVPIILVGTKIDLRDDENTLKKLEKGKEPITPEEGEKLA 142 (171)
T ss_pred CCHHHHHHHCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCHHHHHHCCCCCCCHHHHHHHH
T ss_conf 13223444265899999689778899999999999998599986899998710012300022331147515899999999
Q ss_pred -HHHHHHHHHHHHHCCCCCCHHHHHHHH
Q ss_conf -322321000111002232006787763
Q gi|254780321|r 159 -GISTEDALLVSAKTGEGIPLLLERIVQ 185 (606)
Q Consensus 159 -g~~~~~ii~vSAktG~GV~~LLd~Iv~ 185 (606)
.+.....+.+|||+|.||+++++.++.
T Consensus 143 ~~~~~~~f~E~SAk~g~nV~e~F~~l~r 170 (171)
T cd00157 143 KEIGAIGYMECSALTQEGVKEVFEEAIR 170 (171)
T ss_pred HHCCCCEEEEECCCCCCCHHHHHHHHHC
T ss_conf 9849988999787899598999999966
No 188
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.35 E-value=3.5e-11 Score=94.51 Aligned_cols=158 Identities=19% Similarity=0.210 Sum_probs=100.6
Q ss_pred CEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHCCEEEEEEEEEEEECCCCCEEEEEEEECCCCCH
Q ss_conf 31799980138987788999999829805444431130586779871950523279999743788438999961787300
Q gi|254780321|r 11 IRNFSIVAHIDHGKSTLADRFIQHCRGLTEREMSSQVLDNMDIERERGITIKAQTVRLNYTSTDAKDYQLNLIDTPGHVD 90 (606)
Q Consensus 11 IRN~~IiaHvDhGKTTL~d~lL~~tg~i~~~~~~~~vlD~~~~EreRGITIka~~~~~~~~~~~~~~y~iNlIDTPGH~D 90 (606)
+=-++++|-.+.|||+|..|++ .+.+..... .+ -|+....+ .+. .+++.+.++|.||+|...
T Consensus 7 ~~KivllGd~~VGKTsli~r~~--~~~f~~~~~-~T----------ig~d~~~k--~i~---~~~~~v~l~iwDtaG~e~ 68 (169)
T cd04114 7 LFKIVLIGNAGVGKTCLVRRFT--QGLFPPGQG-AT----------IGVDFMIK--TVE---IKGEKIKLQIWDTAGQER 68 (169)
T ss_pred EEEEEEECCCCCCHHHHHHHHH--HCCCCCCCC-CC----------CCEEEEEE--EEE---ECCEEEEEEEEECCCCCC
T ss_conf 9899999989979999999998--598999867-74----------12478999--999---999999999998999844
Q ss_pred HHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHH-HC---CCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 2799999997302689999868788655899999999-70---9967998326788753211338887755532232100
Q gi|254780321|r 91 FTYEVSRSLSACEGSLLVVDATQGVEAQTLANVYQAI-DN---NHEIITVLNKADLPSADPDRVKKQIEETIGISTEDAL 166 (606)
Q Consensus 91 F~~EV~r~l~a~dgaiLvVdA~~Gvq~QT~~~~~~A~-~~---~l~~I~viNKiD~~~A~~e~v~~ei~~~~g~~~~~ii 166 (606)
|..-....++-+++++||.|.+.----+....|..-+ +. ..++|+|=||+|+...+. -..++.+++..-..-..+
T Consensus 69 ~~~l~~~~~~~a~~~ilvydvt~~~Sf~~l~~w~~~i~~~~~~~~~~ilVGNK~DL~~~r~-v~~~~~~~~a~~~~~~~~ 147 (169)
T cd04114 69 FRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYANNKVITILVGNKIDLAERRE-VSQQRAEEFSDAQDMYYL 147 (169)
T ss_pred CCCCHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHCCC-CCHHHHHHHHHHCCCEEE
T ss_conf 4515577742366459981489888999999999999986898863897311343454178-899999999998899999
Q ss_pred HHHHHCCCCCCHHHHHHHHHH
Q ss_conf 011100223200678776321
Q gi|254780321|r 167 LVSAKTGEGIPLLLERIVQQL 187 (606)
Q Consensus 167 ~vSAktG~GV~~LLd~Iv~~i 187 (606)
.+|||+|.||+++++.|...+
T Consensus 148 E~SAktg~nV~e~F~~la~~l 168 (169)
T cd04114 148 ETSAKESDNVEKLFLDLACRL 168 (169)
T ss_pred EECCCCCCCHHHHHHHHHHHH
T ss_conf 986898808899999999987
No 189
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.35 E-value=2.8e-11 Score=95.18 Aligned_cols=153 Identities=26% Similarity=0.317 Sum_probs=98.7
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHCCEEEEEEEEEEEECCCCCEEEEEEEECCCCCHHHH
Q ss_conf 99980138987788999999829805444431130586779871950523279999743788438999961787300279
Q gi|254780321|r 14 FSIVAHIDHGKSTLADRFIQHCRGLTEREMSSQVLDNMDIERERGITIKAQTVRLNYTSTDAKDYQLNLIDTPGHVDFTY 93 (606)
Q Consensus 14 ~~IiaHvDhGKTTL~d~lL~~tg~i~~~~~~~~vlD~~~~EreRGITIka~~~~~~~~~~~~~~y~iNlIDTPGH~DF~~ 93 (606)
++++|..+.|||+|..|++ .+.+...- ..++ |.....+.+ ..+++.+.++|.||+|...|..
T Consensus 3 ivvvGd~~VGKTsli~r~~--~~~f~~~~-~~Ti----------g~~~~~k~i-----~~~~~~~~l~iwDtaG~e~~~~ 64 (188)
T cd04125 3 VVIIGDYGVGKSSLLKRFT--EDEFSEST-KSTI----------GVDFKIKTV-----YIENKIIKLQIWDTNGQERFRS 64 (188)
T ss_pred EEEECCCCCCHHHHHHHHH--HCCCCCCC-CCCC----------CEEEEEEEE-----EECCEEEEEEEEECCCCHHHHH
T ss_conf 9999999978999999995--19689986-8865----------403579999-----9999999999998999710457
Q ss_pred HHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHH-H---CCCCEEEEECCCCCCCCCC-C-CHHHHHHHHHHHHHHHHHH
Q ss_conf 9999997302689999868788655899999999-7---0996799832678875321-1-3388877555322321000
Q gi|254780321|r 94 EVSRSLSACEGSLLVVDATQGVEAQTLANVYQAI-D---NNHEIITVLNKADLPSADP-D-RVKKQIEETIGISTEDALL 167 (606)
Q Consensus 94 EV~r~l~a~dgaiLvVdA~~Gvq~QT~~~~~~A~-~---~~l~~I~viNKiD~~~A~~-e-~v~~ei~~~~g~~~~~ii~ 167 (606)
-....++-+|++|||.|.++=--=+....|+.-. . ...++|+|-||+|+.+-+. + .-.++..+.+++ ..+.
T Consensus 65 l~~~~~~~a~~~ilvydit~~~Sf~~l~~w~~~i~~~~~~~~~iilvgNK~DL~~~r~V~~~e~~~~a~~~~~---~~~E 141 (188)
T cd04125 65 LNNSYYRGAHGYLLVYDVTDQESFENLKFWINEINRYARENVIKVIVANKSDLVNNKVVDSNIAKSFCDSLNI---PFFE 141 (188)
T ss_pred HHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCEEEECCHHHHHHCCCCCHHHHHHHHHHCCC---EEEE
T ss_conf 8999863786799980389878999999999999987898662451001344766067999999999998699---8999
Q ss_pred HHHHCCCCCCHHHHHHHHHH
Q ss_conf 11100223200678776321
Q gi|254780321|r 168 VSAKTGEGIPLLLERIVQQL 187 (606)
Q Consensus 168 vSAktG~GV~~LLd~Iv~~i 187 (606)
+||++|.||+++++.+++.+
T Consensus 142 ~SAktg~nV~e~F~~l~~~i 161 (188)
T cd04125 142 TSAKQSINVEEAFILLVKLI 161 (188)
T ss_pred ECCCCCCCHHHHHHHHHHHH
T ss_conf 74788909899999999999
No 190
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.33 E-value=6.4e-11 Score=92.81 Aligned_cols=147 Identities=26% Similarity=0.335 Sum_probs=92.2
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHCCEEEEEEEEEEEECCCCCEEEEEEEECCCCCHH-
Q ss_conf 7999801389877889999998298054444311305867798719505232799997437884389999617873002-
Q gi|254780321|r 13 NFSIVAHIDHGKSTLADRFIQHCRGLTEREMSSQVLDNMDIERERGITIKAQTVRLNYTSTDAKDYQLNLIDTPGHVDF- 91 (606)
Q Consensus 13 N~~IiaHvDhGKTTL~d~lL~~tg~i~~~~~~~~vlD~~~~EreRGITIka~~~~~~~~~~~~~~y~iNlIDTPGH~DF- 91 (606)
.++|+|--..|||||.-+| ||+- .+.. |+. .-|+.-..-.+.| ++.++-|+||||....
T Consensus 2 ~V~LVG~PN~GKSTLln~L---T~a~--~~v~----~yp------fTT~~pi~g~~~~-----~~~~iqlvDtPGli~~a 61 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKL---TNTK--SEVA----AYE------FTTLTCVPGVLEY-----KGAKIQLLDLPGIIEGA 61 (233)
T ss_pred EEEEECCCCCCHHHHHHHH---HCCC--CCCC----CCC------CCCCCCEEEEEEE-----CCEEEEEEECCCCCCCC
T ss_conf 5999999999999999999---7899--5436----989------7875747779998-----99899999673002463
Q ss_pred ------HHHHHHHHHHCCEEEEEEECCCCCCHH---------------------------------------------HH
Q ss_conf ------799999997302689999868788655---------------------------------------------89
Q gi|254780321|r 92 ------TYEVSRSLSACEGSLLVVDATQGVEAQ---------------------------------------------TL 120 (606)
Q Consensus 92 ------~~EV~r~l~a~dgaiLvVdA~~Gvq~Q---------------------------------------------T~ 120 (606)
+-++-..++-||..++|||+.+....+ ..
T Consensus 62 ~~g~g~g~~~l~~~r~aD~il~VvD~~~~~~~~~~i~~eLe~~gi~l~~~~~~v~i~~~~~~gi~i~~~~~~~~~~~~~v 141 (233)
T cd01896 62 ADGKGRGRQVIAVARTADLILMVLDATKPEGHREILERELEGVGIRLNKRPPNITIKKKKKGGINITSTVPLTKLDEKTI 141 (233)
T ss_pred CCCCCHHHHHHHHHHHCCEEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCEEEECCCCCCCCCHHHH
T ss_conf 33320689999998758999999847982667899999998605110357876257771358678604566666888999
Q ss_pred HH----------------------HHHHHHCC---CCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 99----------------------99999709---967998326788753211338887755532232100011100223
Q gi|254780321|r 121 AN----------------------VYQAIDNN---HEIITVLNKADLPSADPDRVKKQIEETIGISTEDALLVSAKTGEG 175 (606)
Q Consensus 121 ~~----------------------~~~A~~~~---l~~I~viNKiD~~~A~~e~v~~ei~~~~g~~~~~ii~vSAktG~G 175 (606)
.. +.-++..+ .|.|.|+||+|++.. ++++.+. ...+++++||++|.|
T Consensus 142 ~~il~e~~i~~a~v~i~~~~t~dd~~d~i~~n~~y~P~i~V~NKiDl~~~------ee~~~~~--~~~~~i~ISA~~g~g 213 (233)
T cd01896 142 KAILREYKIHNADVLIREDITVDDLIDVIEGNRVYIPCLYVYNKIDLISI------EELDLLA--RQPNSVVISAEKGLN 213 (233)
T ss_pred HHHHHHHCCCCCEEEECCCCCHHHHHHHHHCCCCCCCEEEEEECCCCCCH------HHHHHHH--CCCCEEEEECCCCCC
T ss_conf 99999827676437860578888989987357676737999974036998------9999864--679859998888989
Q ss_pred CCHHHHHHHHHH
Q ss_conf 200678776321
Q gi|254780321|r 176 IPLLLERIVQQL 187 (606)
Q Consensus 176 V~~LLd~Iv~~i 187 (606)
+++|.+.|.+.+
T Consensus 214 ld~L~~~I~~~L 225 (233)
T cd01896 214 LDELKERIWDKL 225 (233)
T ss_pred HHHHHHHHHHHH
T ss_conf 899999999983
No 191
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.33 E-value=3.5e-11 Score=94.52 Aligned_cols=153 Identities=18% Similarity=0.278 Sum_probs=98.7
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHCCEEEEEEEEEEEECCCCCEEEEEEEECCCCCHHH
Q ss_conf 79998013898778899999982980544443113058677987195052327999974378843899996178730027
Q gi|254780321|r 13 NFSIVAHIDHGKSTLADRFIQHCRGLTEREMSSQVLDNMDIERERGITIKAQTVRLNYTSTDAKDYQLNLIDTPGHVDFT 92 (606)
Q Consensus 13 N~~IiaHvDhGKTTL~d~lL~~tg~i~~~~~~~~vlD~~~~EreRGITIka~~~~~~~~~~~~~~y~iNlIDTPGH~DF~ 92 (606)
-++++|-...|||+|..|++ .|...+... .++ |+....+. + ..+++.+.+.+.||+|...|.
T Consensus 5 Kiv~lGd~~vGKTsli~r~~--~~~f~~~~~-~Ti----------~~~~~~k~--i---~~~~~~~~l~iwDtaG~e~~~ 66 (165)
T cd01864 5 KIILIGDSNVGKTCVVQRFK--SGTFSERQG-NTI----------GVDFTMKT--L---EIEGKRVKLQIWDTAGQERFR 66 (165)
T ss_pred EEEEECCCCCCHHHHHHHHH--HCCCCCCCC-CCC----------CEEEEEEE--E---EECCEEEEEEEEECCCCCCCC
T ss_conf 99999999958999999996--499999879-975----------43789999--9---999999999999899983445
Q ss_pred HHHHHHHHHCCEEEEEEECCCCCCHHHH---HHHHH-HHH---CCCCEEEEECCCCCCCCCCCCHHHHHHHHHH-HHHHH
Q ss_conf 9999999730268999986878865589---99999-997---0996799832678875321133888775553-22321
Q gi|254780321|r 93 YEVSRSLSACEGSLLVVDATQGVEAQTL---ANVYQ-AID---NNHEIITVLNKADLPSADPDRVKKQIEETIG-ISTED 164 (606)
Q Consensus 93 ~EV~r~l~a~dgaiLvVdA~~Gvq~QT~---~~~~~-A~~---~~l~~I~viNKiD~~~A~~e~v~~ei~~~~g-~~~~~ 164 (606)
.-....++-+|++|||.|.++ .+|. ..|.. ... .+.++|+|=||+|++.-+.- ..+|.+++-. .....
T Consensus 67 ~l~~~~~~~a~~~ilvydit~---~~Sf~~~~~w~~~i~~~~~~~~~iilVGNK~DL~~~r~V-~~~~~~~~a~~~~~~~ 142 (165)
T cd01864 67 TITQSYYRSANGAIIAYDITR---RSSFESVPHWIEEVEKYGASNVVLLLIGNKCDLEEQREV-LFEEACTLAEKNGMLA 142 (165)
T ss_pred CCCHHHEECCCEEEEEECCCC---HHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCHHHHCCC-CHHHHHHHHHHCCCCE
T ss_conf 350755221566699713899---899999999999999876999843888772376862899-9999999999839976
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHH
Q ss_conf 00011100223200678776321
Q gi|254780321|r 165 ALLVSAKTGEGIPLLLERIVQQL 187 (606)
Q Consensus 165 ii~vSAktG~GV~~LLd~Iv~~i 187 (606)
.+.+|||+|.||+++++.+...+
T Consensus 143 ~~E~SAk~~~nV~e~F~~la~~i 165 (165)
T cd01864 143 VLETSAKESQNVEEAFLLMATEL 165 (165)
T ss_pred EEEECCCCCCCHHHHHHHHHHHC
T ss_conf 99978885819899999999849
No 192
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=99.33 E-value=3.7e-11 Score=94.35 Aligned_cols=151 Identities=22% Similarity=0.213 Sum_probs=97.5
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHCCEEEEEEEEEEEECCCCCEEEEEEEECCCCCHHH
Q ss_conf 79998013898778899999982980544443113058677987195052327999974378843899996178730027
Q gi|254780321|r 13 NFSIVAHIDHGKSTLADRFIQHCRGLTEREMSSQVLDNMDIERERGITIKAQTVRLNYTSTDAKDYQLNLIDTPGHVDFT 92 (606)
Q Consensus 13 N~~IiaHvDhGKTTL~d~lL~~tg~i~~~~~~~~vlD~~~~EreRGITIka~~~~~~~~~~~~~~y~iNlIDTPGH~DF~ 92 (606)
-++++|-.+-|||+|.-|++ .|.+.+.- .. ||.. . .......+++.+.++|.||+|...|.
T Consensus 3 KivllGd~~VGKTsli~r~~--~~~F~~~y-~~--------------Ti~~-~-~~~~i~~~~~~~~l~iwDtaG~e~~~ 63 (165)
T cd04140 3 RVVVFGAGGVGKSSLVLRFV--KGTFRESY-IP--------------TIED-T-YRQVISCSKNICTLQITDTTGSHQFP 63 (165)
T ss_pred EEEEECCCCCCHHHHHHHHH--HCCCCCCC-CC--------------CCCC-E-EEEEEEECCEEEEEEEEECCCCCCCC
T ss_conf 99998999976999999996--49699986-88--------------4542-0-55899999999999999899984654
Q ss_pred HHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHH-HHH------CCCCEEEEECCCCCCCCCCCCHHHHHHH---HHHHHH
Q ss_conf 999999973026899998687886558999999-997------0996799832678875321133888775---553223
Q gi|254780321|r 93 YEVSRSLSACEGSLLVVDATQGVEAQTLANVYQ-AID------NNHEIITVLNKADLPSADPDRVKKQIEE---TIGIST 162 (606)
Q Consensus 93 ~EV~r~l~a~dgaiLvVdA~~Gvq~QT~~~~~~-A~~------~~l~~I~viNKiD~~~A~~e~v~~ei~~---~~g~~~ 162 (606)
.-....++-+|++|||-|.+.=--=+....|+. ..+ .++|+++|-||+|+...+.- -.+|.++ .+++
T Consensus 64 ~l~~~~~~~a~~~ilvydit~~~Sf~~~~~~~~~i~~~~~~~~~~~piilVgNK~Dl~~~r~V-~~~e~~~~a~~~~~-- 140 (165)
T cd04140 64 AMQRLSISKGHAFILVYSVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESHKREV-SSNEGAACATEWNC-- 140 (165)
T ss_pred CCHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCC-CHHHHHHHHHHCCC--
T ss_conf 232445068857999813898789999999999999996158888878998642464002788-99999999998698--
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHH
Q ss_conf 210001110022320067877632
Q gi|254780321|r 163 EDALLVSAKTGEGIPLLLERIVQQ 186 (606)
Q Consensus 163 ~~ii~vSAktG~GV~~LLd~Iv~~ 186 (606)
..+.+|||+|.||+++++.+++.
T Consensus 141 -~~~E~SAk~~~nV~e~F~~l~~l 163 (165)
T cd04140 141 -AFMETSAKTNHNVQELFQELLNL 163 (165)
T ss_pred -EEEEECCCCCCCHHHHHHHHHHC
T ss_conf -89997447794879999999814
No 193
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=99.32 E-value=9.1e-11 Score=91.77 Aligned_cols=156 Identities=17% Similarity=0.246 Sum_probs=99.7
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHCCEEEEEEEEEEEECCCCCEEEEEEEECCCCCHHHH
Q ss_conf 99980138987788999999829805444431130586779871950523279999743788438999961787300279
Q gi|254780321|r 14 FSIVAHIDHGKSTLADRFIQHCRGLTEREMSSQVLDNMDIERERGITIKAQTVRLNYTSTDAKDYQLNLIDTPGHVDFTY 93 (606)
Q Consensus 14 ~~IiaHvDhGKTTL~d~lL~~tg~i~~~~~~~~vlD~~~~EreRGITIka~~~~~~~~~~~~~~y~iNlIDTPGH~DF~~ 93 (606)
+.++|...-|||+|.-|++. +.+....- --||-.....-.+ ..+++.+.++|.||+|...|..
T Consensus 3 ivlvGd~~VGKTsLi~r~~~--~~f~~~~y--------------~~tig~~~~~k~i-~v~~~~v~l~iwDtaG~e~~~~ 65 (193)
T cd04118 3 VVMLGKESVGKTSLVERYVH--HRFLVGPY--------------QNTIGAAFVAKRM-VVGERVVTLGIWDTAGSERYEA 65 (193)
T ss_pred EEEECCCCCCHHHHHHHHHH--CCCCCCCC--------------CCCCEEEEEEEEE-EECCEEEEEEEEECCCCHHHHH
T ss_conf 99999699879999999985--97998997--------------8763058899999-9999999999991999731235
Q ss_pred HHHHHHHHCCEEEEEEECCCCCCHHHH---HHHHHHH---HCCCCEEEEECCCCCCCCCC--CCH-HHHHHHHHHHHHHH
Q ss_conf 999999730268999986878865589---9999999---70996799832678875321--133-88877555322321
Q gi|254780321|r 94 EVSRSLSACEGSLLVVDATQGVEAQTL---ANVYQAI---DNNHEIITVLNKADLPSADP--DRV-KKQIEETIGISTED 164 (606)
Q Consensus 94 EV~r~l~a~dgaiLvVdA~~Gvq~QT~---~~~~~A~---~~~l~~I~viNKiD~~~A~~--e~v-~~ei~~~~g~~~~~ 164 (606)
-.....+-++++|||.|-++ .+|. ..|..-+ ..+.++++|-||+|+..-+. ..| .+|..++..--.-.
T Consensus 66 l~~~y~~~a~~~ilvydit~---~~Sf~~i~~W~~~i~~~~~~~~iilVGnK~DL~~~~~~~r~V~~~e~~~~a~~~~~~ 142 (193)
T cd04118 66 MSRIYYRGAKAAIVCYDLTD---SSSFERAKFWVKELQNLEEHCKIYLCGTKSDLIEQDRSLRQVDFHDVQDFADEIKAQ 142 (193)
T ss_pred HHHHHHCCCCEEEEEECCCC---HHHHHHHHHHHHHHHHHCCCCCEEEEEECHHHHHCCCCCCCCCHHHHHHHHHHCCCE
T ss_conf 57988347744578830698---799998999999999748999979997746632201666446899999999980996
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHC
Q ss_conf 0001110022320067877632100
Q gi|254780321|r 165 ALLVSAKTGEGIPLLLERIVQQLPS 189 (606)
Q Consensus 165 ii~vSAktG~GV~~LLd~Iv~~iP~ 189 (606)
.+.+|||+|.||+++++.|++.+-.
T Consensus 143 ~~E~SAktg~nV~e~F~~la~~i~~ 167 (193)
T cd04118 143 HFETSSKTGQNVDELFQKVAEDFVS 167 (193)
T ss_pred EEEECCCCCCCHHHHHHHHHHHHHH
T ss_conf 9998389893989999999999997
No 194
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=99.32 E-value=3.6e-11 Score=94.46 Aligned_cols=156 Identities=21% Similarity=0.271 Sum_probs=99.6
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHCCEEEEEEEEEEEECCCCCEEEEEEEECCCCCHHH
Q ss_conf 79998013898778899999982980544443113058677987195052327999974378843899996178730027
Q gi|254780321|r 13 NFSIVAHIDHGKSTLADRFIQHCRGLTEREMSSQVLDNMDIERERGITIKAQTVRLNYTSTDAKDYQLNLIDTPGHVDFT 92 (606)
Q Consensus 13 N~~IiaHvDhGKTTL~d~lL~~tg~i~~~~~~~~vlD~~~~EreRGITIka~~~~~~~~~~~~~~y~iNlIDTPGH~DF~ 92 (606)
-+.++|-..-|||+|.-|++ .+.+...- ..+ =|++...+.+. .+++.++++|.||+|+..|.
T Consensus 4 KivlvGd~~VGKTsli~r~~--~~~f~~~~-~~T----------ig~~~~~k~i~-----~~~~~~~l~iwDtaG~e~~~ 65 (166)
T cd04122 4 KYIIIGDMGVGKSCLLHQFT--EKKFMADC-PHT----------IGVEFGTRIIE-----VNGQKIKLQIWDTAGQERFR 65 (166)
T ss_pred EEEEECCCCCCHHHHHHHHH--CCCCCCCC-CCC----------CCEEEEEEEEE-----ECCEEEEEEEEECCCCCCCC
T ss_conf 99999999957999999991--29889999-997----------44688999999-----99999999999899985444
Q ss_pred HHHHHHHHHCCEEEEEEECCCCCCHHHHHHHH-HHHHC---CCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999997302689999868788655899999-99970---996799832678875321133888775553223210001
Q gi|254780321|r 93 YEVSRSLSACEGSLLVVDATQGVEAQTLANVY-QAIDN---NHEIITVLNKADLPSADPDRVKKQIEETIGISTEDALLV 168 (606)
Q Consensus 93 ~EV~r~l~a~dgaiLvVdA~~Gvq~QT~~~~~-~A~~~---~l~~I~viNKiD~~~A~~e~v~~ei~~~~g~~~~~ii~v 168 (606)
.-....++-++++|||.|.+.=--=+-...|. .+... +.++++|-||+|++..+. -..+|..++..-..-..+.+
T Consensus 66 ~~~~~~~~~a~~~ilvydvt~~~Sf~~l~~w~~~~~~~~~~~~~iilVGNK~DL~~~r~-V~~~e~~~~a~~~~~~~~E~ 144 (166)
T cd04122 66 AVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLEAQRD-VTYEEAKQFADENGLLFLEC 144 (166)
T ss_pred CCCHHHEECCCEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHCCC-CCHHHHHHHHHHCCCEEEEE
T ss_conf 25211143154659972587476799999999999985699975870340157444389-99999999999869989998
Q ss_pred HHHCCCCCCHHHHHHHHHH
Q ss_conf 1100223200678776321
Q gi|254780321|r 169 SAKTGEGIPLLLERIVQQL 187 (606)
Q Consensus 169 SAktG~GV~~LLd~Iv~~i 187 (606)
|||+|.||++++..+++.+
T Consensus 145 SAk~g~nV~e~F~~l~~~i 163 (166)
T cd04122 145 SAKTGENVEDAFLETAKKI 163 (166)
T ss_pred CCCCCCCHHHHHHHHHHHH
T ss_conf 6587808899999999999
No 195
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=99.32 E-value=3.8e-11 Score=94.27 Aligned_cols=149 Identities=19% Similarity=0.265 Sum_probs=96.6
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHCCEEEEEEEEEEEECCCCCEEEEEEEECCCCCHHHH
Q ss_conf 99980138987788999999829805444431130586779871950523279999743788438999961787300279
Q gi|254780321|r 14 FSIVAHIDHGKSTLADRFIQHCRGLTEREMSSQVLDNMDIERERGITIKAQTVRLNYTSTDAKDYQLNLIDTPGHVDFTY 93 (606)
Q Consensus 14 ~~IiaHvDhGKTTL~d~lL~~tg~i~~~~~~~~vlD~~~~EreRGITIka~~~~~~~~~~~~~~y~iNlIDTPGH~DF~~ 93 (606)
+.++|...-|||+|+-|+. .+.+.+. --|| ...|....++.|.++|.||+|+..|..
T Consensus 3 ivllGd~~VGKTsl~~rf~--~~~F~~~----------------~~Ti-----g~~~~~k~~~~~~l~IwDTaGqE~f~s 59 (220)
T cd04126 3 VVLLGDMNVGKTSLLHRYM--ERRFKDT----------------VSTV-----GGAFYLKQWGPYNISIWDTAGREQFHG 59 (220)
T ss_pred EEEECCCCCCHHHHHHHHH--HCCCCCC----------------CCCC-----CEEEEEEECCEEEEEEEECCCCCCCCC
T ss_conf 9999999988999999997--2989998----------------8871-----368999876478899994798622433
Q ss_pred HHHHHHHHCCEEEEEEECCCCCCHHHHH---HHHHHHH----CCCCEEEEECCCCCCCCC-----------------CCC
Q ss_conf 9999997302689999868788655899---9999997----099679983267887532-----------------113
Q gi|254780321|r 94 EVSRSLSACEGSLLVVDATQGVEAQTLA---NVYQAID----NNHEIITVLNKADLPSAD-----------------PDR 149 (606)
Q Consensus 94 EV~r~l~a~dgaiLvVdA~~Gvq~QT~~---~~~~A~~----~~l~~I~viNKiD~~~A~-----------------~e~ 149 (606)
-.....+-++|+|||-|.+. .+|.. .|+.-+. .+.++|+|=||+|+..-. ...
T Consensus 60 l~~~y~r~a~~~ilvyDit~---~~Sf~~l~~~~~~~~~~~~~~~~~ilVGNK~DL~~~~~~~~~~~~~~~~~~~~~~r~ 136 (220)
T cd04126 60 LGSMYCRGAAAVILTYDVSN---VQSLEELEDRFLGLTDTANEDCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQ 136 (220)
T ss_pred CHHHHHCCCCEEEEEEECCC---HHHHHHHHHHHHHHHHHCCCCCEEEEEEECHHCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 26888567988999997989---899999999999999847999808999887121364344333333322344100354
Q ss_pred H-HHHHHHH-------HHHHHH-------HHHHHHHHCCCCCCHHHHHHHHHHH
Q ss_conf 3-8887755-------532232-------1000111002232006787763210
Q gi|254780321|r 150 V-KKQIEET-------IGISTE-------DALLVSAKTGEGIPLLLERIVQQLP 188 (606)
Q Consensus 150 v-~~ei~~~-------~g~~~~-------~ii~vSAktG~GV~~LLd~Iv~~iP 188 (606)
| .++.+++ .+++.. -.+.+|||+|.||+++++.|++.+-
T Consensus 137 Vs~ee~~~~a~~~~~~~~~~~~~~~~~~~~~fEtSAKtg~nV~e~F~~i~~~i~ 190 (220)
T cd04126 137 VTLEDAKAFYKRINKYKMLDEDLSPAAEKMCFETSAKTGYNVDELFEYLFNLVL 190 (220)
T ss_pred CCHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 489999999998502202221111245776999147899798999999999999
No 196
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=99.32 E-value=5.8e-11 Score=93.07 Aligned_cols=154 Identities=23% Similarity=0.313 Sum_probs=99.5
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHCCEEEEEEEEEEEECCCCCEEEEEEEECCCCCHHH
Q ss_conf 79998013898778899999982980544443113058677987195052327999974378843899996178730027
Q gi|254780321|r 13 NFSIVAHIDHGKSTLADRFIQHCRGLTEREMSSQVLDNMDIERERGITIKAQTVRLNYTSTDAKDYQLNLIDTPGHVDFT 92 (606)
Q Consensus 13 N~~IiaHvDhGKTTL~d~lL~~tg~i~~~~~~~~vlD~~~~EreRGITIka~~~~~~~~~~~~~~y~iNlIDTPGH~DF~ 92 (606)
-++++|...-|||+|.-|++ .+.+...-. .++ |+....+.+ ..+.+.+.++|.||+|...|.
T Consensus 3 KivllGd~~VGKTsli~r~~--~~~f~~~y~-~Ti----------g~~~~~k~i-----~~~~~~i~l~iwDtaGqe~~~ 64 (165)
T cd01865 3 KLLIIGNSSVGKTSFLFRYA--DDSFTSAFV-STV----------GIDFKVKTV-----FRNDKRVKLQIWDTAGQERYR 64 (165)
T ss_pred EEEEECCCCCCHHHHHHHHH--CCCCCCCCC-CCC----------CEEEEEEEE-----EECCEEEEEEEEECCCCCCCC
T ss_conf 99999999968899999992--498899768-876----------378799999-----999999999999699983455
Q ss_pred HHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHH-HHHC---CCCEEEEECCCCCCCCCCCC--HHHHHHHHHHHHHHHHH
Q ss_conf 999999973026899998687886558999999-9970---99679983267887532113--38887755532232100
Q gi|254780321|r 93 YEVSRSLSACEGSLLVVDATQGVEAQTLANVYQ-AIDN---NHEIITVLNKADLPSADPDR--VKKQIEETIGISTEDAL 166 (606)
Q Consensus 93 ~EV~r~l~a~dgaiLvVdA~~Gvq~QT~~~~~~-A~~~---~l~~I~viNKiD~~~A~~e~--v~~ei~~~~g~~~~~ii 166 (606)
.-....++-++|++||.|.++=--=+....|.. .... +.++++|-||+|+.+.+.-. -.+++.+.+++ ..+
T Consensus 65 ~l~~~y~~~a~~~ilvydit~~~Sf~~~~~w~~~i~~~~~~~~~iilvgNK~DL~~~r~v~~~~~~~~a~~~~~---~~~ 141 (165)
T cd01865 65 TITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKCDMEDERVVSSERGRQLADQLGF---EFF 141 (165)
T ss_pred CCHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHCCCCCHHHHHHHHHHCCC---EEE
T ss_conf 44154411354489985178879999999999999986898725999602423555188999999999998699---799
Q ss_pred HHHHHCCCCCCHHHHHHHHHH
Q ss_conf 011100223200678776321
Q gi|254780321|r 167 LVSAKTGEGIPLLLERIVQQL 187 (606)
Q Consensus 167 ~vSAktG~GV~~LLd~Iv~~i 187 (606)
.+|||+|.||+++++.+++.+
T Consensus 142 E~SAk~~~nV~e~F~~l~~~i 162 (165)
T cd01865 142 EASAKENINVKQVFERLVDII 162 (165)
T ss_pred EECCCCCCCHHHHHHHHHHHH
T ss_conf 976898908899999999999
No 197
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.32 E-value=9.2e-11 Score=91.73 Aligned_cols=156 Identities=21% Similarity=0.270 Sum_probs=101.1
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHCCEEEEEEEEEEEECCCCCEEEEEEEECCCCCHHH
Q ss_conf 79998013898778899999982980544443113058677987195052327999974378843899996178730027
Q gi|254780321|r 13 NFSIVAHIDHGKSTLADRFIQHCRGLTEREMSSQVLDNMDIERERGITIKAQTVRLNYTSTDAKDYQLNLIDTPGHVDFT 92 (606)
Q Consensus 13 N~~IiaHvDhGKTTL~d~lL~~tg~i~~~~~~~~vlD~~~~EreRGITIka~~~~~~~~~~~~~~y~iNlIDTPGH~DF~ 92 (606)
-++++|..+.|||||+-|++ .+...... +..-|+......+. .+++.+.++|+||+|...|.
T Consensus 2 Ki~vvG~~~vGKTsli~r~~--~~~f~~~~-----------~~tig~d~~~k~v~-----~~~~~~~l~i~D~~g~e~~~ 63 (161)
T cd01861 2 KLVFLGDQSVGKTSIITRFM--YDTFDNQY-----------QATIGIDFLSKTMY-----LEDKTVRLQLWDTAGQERFR 63 (161)
T ss_pred EEEEECCCCCCHHHHHHHHH--HCCCCCCC-----------CCCCCEEEEEEEEE-----ECCEEEEEEEEECCCCHHHH
T ss_conf 79999979978999999993--19999984-----------89756788999999-----99999999999799853157
Q ss_pred HHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHH----CCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999973026899998687886558999999997----0996799832678875321133888775553223210001
Q gi|254780321|r 93 YEVSRSLSACEGSLLVVDATQGVEAQTLANVYQAID----NNHEIITVLNKADLPSADPDRVKKQIEETIGISTEDALLV 168 (606)
Q Consensus 93 ~EV~r~l~a~dgaiLvVdA~~Gvq~QT~~~~~~A~~----~~l~~I~viNKiD~~~A~~e~v~~ei~~~~g~~~~~ii~v 168 (606)
.-....++-++++++|.|.++----+....|+.-.. ...++++|-||+|+++.+.-. .+|.+++..-..-..+.+
T Consensus 64 ~~~~~~~~~~~~~ilvfd~t~~~Sf~~~~~w~~~i~~~~~~~~~ivlvGnK~Dl~~~r~v~-~~e~~~~a~~~~~~y~E~ 142 (161)
T cd01861 64 SLIPSYIRDSSVAVVVYDITNRQSFDNTDKWIDDVRDERGNDVIIVLVGNKTDLSDKRQVS-TEEGEKKAKELNAMFIET 142 (161)
T ss_pred HHHHHHHHHHCEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCHHCCCCC-HHHHHHHHHHCCCEEEEE
T ss_conf 8889886652589999847998999999999999998657898499961021102217789-999999999849989998
Q ss_pred HHHCCCCCCHHHHHHHHHH
Q ss_conf 1100223200678776321
Q gi|254780321|r 169 SAKTGEGIPLLLERIVQQL 187 (606)
Q Consensus 169 SAktG~GV~~LLd~Iv~~i 187 (606)
|||+|.||+++++.|...+
T Consensus 143 Sak~~~nV~e~F~~la~~l 161 (161)
T cd01861 143 SAKAGHNVKELFRKIASAL 161 (161)
T ss_pred CCCCCCCHHHHHHHHHHHC
T ss_conf 3477808899999999709
No 198
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=99.32 E-value=5.9e-11 Score=93.05 Aligned_cols=148 Identities=21% Similarity=0.284 Sum_probs=99.5
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHCCEEEE-EEEEEEEECCCCCEEEEEEEECCCCCHHH
Q ss_conf 99980138987788999999829805444431130586779871950523-27999974378843899996178730027
Q gi|254780321|r 14 FSIVAHIDHGKSTLADRFIQHCRGLTEREMSSQVLDNMDIERERGITIKA-QTVRLNYTSTDAKDYQLNLIDTPGHVDFT 92 (606)
Q Consensus 14 ~~IiaHvDhGKTTL~d~lL~~tg~i~~~~~~~~vlD~~~~EreRGITIka-~~~~~~~~~~~~~~y~iNlIDTPGH~DF~ 92 (606)
++++|-..-|||+|.-|++ .|.+.+.- .. ||.. ....+. .+++.+.++|.||+|+.+|.
T Consensus 4 ivllGd~~VGKTsli~r~~--~~~f~~~y-~~--------------Ti~~~~~k~i~---~~~~~~~l~iwDtaG~e~~~ 63 (163)
T cd04136 4 VVVLGSGGVGKSALTVQFV--QGIFVEKY-DP--------------TIEDSYRKQIE---VDGQQCMLEILDTAGTEQFT 63 (163)
T ss_pred EEEECCCCCCHHHHHHHHH--HCCCCCCC-CC--------------CCCCEEEEEEE---ECCEEEEEEECCCCCCHHHH
T ss_conf 9998999988999999997--19598866-99--------------54206999999---99999999864576544555
Q ss_pred HHHHHHHHHCCEEEEEEECCCCCCHHHHH---HHHHH-H----HCCCCEEEEECCCCCCCCCCC--CHHHHHHHHHHHHH
Q ss_conf 99999997302689999868788655899---99999-9----709967998326788753211--33888775553223
Q gi|254780321|r 93 YEVSRSLSACEGSLLVVDATQGVEAQTLA---NVYQA-I----DNNHEIITVLNKADLPSADPD--RVKKQIEETIGIST 162 (606)
Q Consensus 93 ~EV~r~l~a~dgaiLvVdA~~Gvq~QT~~---~~~~A-~----~~~l~~I~viNKiD~~~A~~e--~v~~ei~~~~g~~~ 162 (606)
.-....++-+||+|||.|.++ .+|.. .|+.- . ..++|+++|-||+|+...+.- +-.+++...+++
T Consensus 64 ~~~~~y~~~a~~~ilvydvt~---~~Sf~~l~~~~~~i~~~~~~~~~piilVGnK~Dl~~~r~v~~~~~~~~a~~~~~-- 138 (163)
T cd04136 64 AMRDLYIKNGQGFVLVYSITS---QSSFNDLQDLREQILRVKDTENVPMVLVGNKCDLEDERVVSREEGQALARQWGC-- 138 (163)
T ss_pred HHHHHHHCCCCEEEEEECCCC---HHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHCCCCHHHHHHHHHHCCC--
T ss_conf 678988346876999704898---899999999999999861888886787623547264078999999999998499--
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHH
Q ss_conf 2100011100223200678776321
Q gi|254780321|r 163 EDALLVSAKTGEGIPLLLERIVQQL 187 (606)
Q Consensus 163 ~~ii~vSAktG~GV~~LLd~Iv~~i 187 (606)
..+.+|||+|.||+++++.++..+
T Consensus 139 -~~~E~SAk~~~nV~e~F~~l~~~i 162 (163)
T cd04136 139 -PFYETSAKSKINVDEVFADLVRQI 162 (163)
T ss_pred -EEEEECCCCCCCHHHHHHHHHHHH
T ss_conf -899974487805899999999963
No 199
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=99.32 E-value=4.3e-11 Score=93.94 Aligned_cols=156 Identities=18% Similarity=0.233 Sum_probs=101.6
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHCCEEEEEEEEEEEECCCCCEEEEEEEECCCCCHHHH
Q ss_conf 99980138987788999999829805444431130586779871950523279999743788438999961787300279
Q gi|254780321|r 14 FSIVAHIDHGKSTLADRFIQHCRGLTEREMSSQVLDNMDIERERGITIKAQTVRLNYTSTDAKDYQLNLIDTPGHVDFTY 93 (606)
Q Consensus 14 ~~IiaHvDhGKTTL~d~lL~~tg~i~~~~~~~~vlD~~~~EreRGITIka~~~~~~~~~~~~~~y~iNlIDTPGH~DF~~ 93 (606)
++++|...-|||+|..|++ .+.+...- .. .-|+....+.+.+ ..+++.+.++|.||+|...|..
T Consensus 3 ivvlGd~~VGKTsLi~r~~--~~~f~~~y-~~----------Tig~~~~~k~i~~---~~~~~~v~l~iwDtaG~e~~~~ 66 (162)
T cd04106 3 VIVVGNGNVGKSSMIQRFV--KGIFTKDY-KK----------TIGVDFLEKQIFL---RQSDEDVRLMLWDTAGQEEFDA 66 (162)
T ss_pred EEEECCCCCCHHHHHHHHH--HCCCCCCC-CC----------CCCCEEEEEEEEE---CCCCEEEEEEEEECCCCCCCCC
T ss_conf 9999999988999999998--49689876-88----------5562578878998---6799799999997899701341
Q ss_pred HHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHH---CCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999973026899998687886558999999997---099679983267887532113388877555322321000111
Q gi|254780321|r 94 EVSRSLSACEGSLLVVDATQGVEAQTLANVYQAID---NNHEIITVLNKADLPSADPDRVKKQIEETIGISTEDALLVSA 170 (606)
Q Consensus 94 EV~r~l~a~dgaiLvVdA~~Gvq~QT~~~~~~A~~---~~l~~I~viNKiD~~~A~~e~v~~ei~~~~g~~~~~ii~vSA 170 (606)
-....++-+|++|||.|.+.=--=+....|+.-++ .++|+|+|-||+|+..-+. -..+|.+++..--.-..+.+||
T Consensus 67 l~~~~~~~a~~~ilvydvt~~~Sf~~l~~w~~~~~~~~~~~piilVgNK~DL~~~r~-V~~~e~~~~a~~~~~~~~E~SA 145 (162)
T cd04106 67 ITKAYYRGAQACILVFSTTDRESFEAIESWKEKVEAECGDIPMVLVQTKIDLLDQAV-ITNEEAEALAKRLQLPLFRTSV 145 (162)
T ss_pred CHHHHHHHHCCEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHCCC-CCHHHHHHHHHHCCCEEEEECC
T ss_conf 524561230312688406988999999999999997669962999840544410177-8999999999986987999868
Q ss_pred HCCCCCCHHHHHHHHH
Q ss_conf 0022320067877632
Q gi|254780321|r 171 KTGEGIPLLLERIVQQ 186 (606)
Q Consensus 171 ktG~GV~~LLd~Iv~~ 186 (606)
|+|.||+++++.+.++
T Consensus 146 k~~~nV~e~F~~la~k 161 (162)
T cd04106 146 KDDFNVTELFEYLAEK 161 (162)
T ss_pred CCCCCHHHHHHHHHHH
T ss_conf 8882989999999960
No 200
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.32 E-value=6.2e-11 Score=92.88 Aligned_cols=153 Identities=20% Similarity=0.328 Sum_probs=104.8
Q ss_pred HHHCEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHCCEEEEEEEEEEEECCCCCEEEEEEEECCC
Q ss_conf 52531799980138987788999999829805444431130586779871950523279999743788438999961787
Q gi|254780321|r 8 LSRIRNFSIVAHIDHGKSTLADRFIQHCRGLTEREMSSQVLDNMDIERERGITIKAQTVRLNYTSTDAKDYQLNLIDTPG 87 (606)
Q Consensus 8 ~~~IRN~~IiaHvDhGKTTL~d~lL~~tg~i~~~~~~~~vlD~~~~EreRGITIka~~~~~~~~~~~~~~y~iNlIDTPG 87 (606)
|++| +||++|.-..|||||--+| ||.-. ..+|. -|.|+.-+.-.+.| +++.+.++|.||
T Consensus 1 Mk~i-~IALvGNPN~GKSTLFN~L---TG~~q--~VgNw----------PGvTVEkk~G~~~~-----~~~~~~ivDLPG 59 (772)
T PRK09554 1 MKKL-TIGLIGNPNSGKTTLFNQL---TGARQ--RVGNW----------AGVTVERKEGQFST-----TDHQVTLVDLPG 59 (772)
T ss_pred CCCC-EEEEECCCCCCHHHHHHHH---HCCCC--EEECC----------CCCEEEEEEEEEEE-----CCCEEEEEECCC
T ss_conf 9735-6998889987899999998---68998--35789----------97647423899996-----894699997997
Q ss_pred CCHHH---------HHHHHH-HH--HCCEEEEEEECCCCCCHHHHHHHHHH---HHCCCCEEEEECCCCCCCCCCCC-HH
Q ss_conf 30027---------999999-97--30268999986878865589999999---97099679983267887532113-38
Q gi|254780321|r 88 HVDFT---------YEVSRS-LS--ACEGSLLVVDATQGVEAQTLANVYQA---IDNNHEIITVLNKADLPSADPDR-VK 151 (606)
Q Consensus 88 H~DF~---------~EV~r~-l~--a~dgaiLvVdA~~Gvq~QT~~~~~~A---~~~~l~~I~viNKiD~~~A~~e~-v~ 151 (606)
--..+ ..|.|- +. -.|.++.||||+. -..++|++ ++.|+|.|+++|.||.-..+=-+ =.
T Consensus 60 ~YSL~~~S~e~s~dE~Var~~ll~~~pDvvvnVvDAtn-----LeRnLyLt~QllElg~PvVvaLNM~D~A~~~Gi~ID~ 134 (772)
T PRK09554 60 TYSLTTISSQTSLDEQIACHYILSGDADLLINVVDASN-----LERNLYLTLQLLELGIPCIVALNMLDIAEKQNIRIDI 134 (772)
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEEEEECCC-----HHHHHHHHHHHHHCCCCEEEEEECHHHHHHCCCEECH
T ss_conf 78699999777730899999861399989999801687-----5442899999997499989998779989887793289
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHC
Q ss_conf 88775553223210001110022320067877632100
Q gi|254780321|r 152 KQIEETIGISTEDALLVSAKTGEGIPLLLERIVQQLPS 189 (606)
Q Consensus 152 ~ei~~~~g~~~~~ii~vSAktG~GV~~LLd~Iv~~iP~ 189 (606)
+.+++.+|++ ++++||.+|.|+++|.++|.+.-++
T Consensus 135 ~~Ls~~LGvP---VV~~~A~~g~Gi~eL~~ai~~~~~~ 169 (772)
T PRK09554 135 DALSARLGCP---VIPLVSTRGRGIEALKLAIDRYKAN 169 (772)
T ss_pred HHHHHHHCCC---EEEEEECCCCCHHHHHHHHHHHHCC
T ss_conf 9999985899---8999827887999999999975225
No 201
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=99.31 E-value=6.9e-11 Score=92.59 Aligned_cols=157 Identities=23% Similarity=0.252 Sum_probs=97.4
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHCCEEEE-EEEEEEEECCCCCEEEEEEEECCCCCHHH
Q ss_conf 99980138987788999999829805444431130586779871950523-27999974378843899996178730027
Q gi|254780321|r 14 FSIVAHIDHGKSTLADRFIQHCRGLTEREMSSQVLDNMDIERERGITIKA-QTVRLNYTSTDAKDYQLNLIDTPGHVDFT 92 (606)
Q Consensus 14 ~~IiaHvDhGKTTL~d~lL~~tg~i~~~~~~~~vlD~~~~EreRGITIka-~~~~~~~~~~~~~~y~iNlIDTPGH~DF~ 92 (606)
++++|-.+-|||+|.-|++ .+.+...- . -||-. ....+. .+++.+.++|.||+|+.+|.
T Consensus 1 ivllGd~~VGKTsli~r~~--~~~f~~~y-~--------------~Ti~~~~~~~~~---~~~~~~~l~i~DtaG~e~~~ 60 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYT--TNAFPEDY-V--------------PTVFENYSADVE---VDGKPVELGLWDTAGQEDYD 60 (174)
T ss_pred EEEECCCCCCHHHHHHHHH--HCCCCCCC-C--------------CCEEEEEEEEEE---ECCEEEEEEEEECCCCCCCC
T ss_conf 5998978975999999995--39899985-7--------------850578999999---99999999999489870345
Q ss_pred HHHHHHHHHCCEEEEEEECCCCCCHHHHHH-HHHHH---HCCCCEEEEECCCCCCCCCC----------CCHH-HHHHHH
Q ss_conf 999999973026899998687886558999-99999---70996799832678875321----------1338-887755
Q gi|254780321|r 93 YEVSRSLSACEGSLLVVDATQGVEAQTLAN-VYQAI---DNNHEIITVLNKADLPSADP----------DRVK-KQIEET 157 (606)
Q Consensus 93 ~EV~r~l~a~dgaiLvVdA~~Gvq~QT~~~-~~~A~---~~~l~~I~viNKiD~~~A~~----------e~v~-~ei~~~ 157 (606)
.-....++-++++|||-|-++=--=+.... |.... ..++|+|+|-||+|+..-+. ..|. ++.+++
T Consensus 61 ~l~~~~~~~a~~~ilvydvt~~~Sf~~~~~~w~~~i~~~~~~~piilVgnK~DL~~~~~~~~~~~~~~~~~Vs~~~~~~~ 140 (174)
T smart00174 61 RLRPLSYPDTDVFLICFSVDSPASFENVKEKWYPEVKHFCPNTPIILVGTKLDLREDKSTLRELSKQKQEPVTYEQGEAL 140 (174)
T ss_pred CCCHHHCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCHHHHHHH
T ss_conf 45001104886899997589878999999989999998688986999987542501233354553314650029999999
Q ss_pred H-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCC
Q ss_conf 5-32232100011100223200678776321000
Q gi|254780321|r 158 I-GISTEDALLVSAKTGEGIPLLLERIVQQLPSP 190 (606)
Q Consensus 158 ~-g~~~~~ii~vSAktG~GV~~LLd~Iv~~iP~P 190 (606)
- .+.....+.+|||+|.||+++++.++..+=.|
T Consensus 141 a~~~~~~~y~EtSAk~g~nV~e~F~~l~r~~l~p 174 (174)
T smart00174 141 AKRIGAVKYLECSALTQEGVREVFEEAIRAALNP 174 (174)
T ss_pred HHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHCC
T ss_conf 9983997899964588949899999999997294
No 202
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.31 E-value=1.7e-10 Score=89.92 Aligned_cols=159 Identities=21% Similarity=0.259 Sum_probs=103.7
Q ss_pred HHCEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHCCEEEEEEEEEEEECCCCCEEEEEEEECCCC
Q ss_conf 25317999801389877889999998298054444311305867798719505232799997437884389999617873
Q gi|254780321|r 9 SRIRNFSIVAHIDHGKSTLADRFIQHCRGLTEREMSSQVLDNMDIERERGITIKAQTVRLNYTSTDAKDYQLNLIDTPGH 88 (606)
Q Consensus 9 ~~IRN~~IiaHvDhGKTTL~d~lL~~tg~i~~~~~~~~vlD~~~~EreRGITIka~~~~~~~~~~~~~~y~iNlIDTPGH 88 (606)
.++-++.|+|-.+.|||+|.-|++. +.+....-..+ -|.....+++. .+++.+.+.|.||+|+
T Consensus 2 r~vfk~~VlG~~~VGKTsLi~rf~~--~~f~~~~y~~T----------i~~~~~~k~v~-----v~g~~~~L~i~Dt~g~ 64 (169)
T cd01892 2 RNVFLCFVLGAKGSGKSALLRAFLG--RSFSLNAYSPT----------IKPRYAVNTVE-----VYGQEKYLILREVGED 64 (169)
T ss_pred CEEEEEEEECCCCCCHHHHHHHHHC--CCCCCCCCCCC----------CCCEEEEEEEE-----ECCEEEEEEEEECCCC
T ss_conf 5089999999999889999999964--99986665675----------46618999999-----8999999999855653
Q ss_pred CHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHH---HHHHHH--HCCCCEEEEECCCCCCCCCCCCHHHHHHHH---HHH
Q ss_conf 002799999997302689999868788655899---999999--709967998326788753211338887755---532
Q gi|254780321|r 89 VDFTYEVSRSLSACEGSLLVVDATQGVEAQTLA---NVYQAI--DNNHEIITVLNKADLPSADPDRVKKQIEET---IGI 160 (606)
Q Consensus 89 ~DF~~EV~r~l~a~dgaiLvVdA~~Gvq~QT~~---~~~~A~--~~~l~~I~viNKiD~~~A~~e~v~~ei~~~---~g~ 160 (606)
..|..-....++.||+++||-|.++- ++-. .|+.-. ...+|+++|=||.|++.-+. -..+|.+++ .++
T Consensus 65 e~~~~l~~~~~~~ad~~ilVyDit~~---~SF~~i~~~~~~~~~~~~iP~vlVgNK~DL~~~rq-V~~~e~~~~a~~~~~ 140 (169)
T cd01892 65 EVAILLNDAELAACDVACLVYDSSDP---KSFSYCAEVYKKYFMLGEIPCLFVAAKADLDEQQQ-RYEVQPDEFCRKLGL 140 (169)
T ss_pred HHHHHHHHHHHCCCCEEEEEEECCCH---HHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCC-CCHHHHHHHHHHCCC
T ss_conf 23556658875469889999979987---89999999999700568981899988655420375-467769999998399
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHCC
Q ss_conf 232100011100223200678776321000
Q gi|254780321|r 161 STEDALLVSAKTGEGIPLLLERIVQQLPSP 190 (606)
Q Consensus 161 ~~~~ii~vSAktG~GV~~LLd~Iv~~iP~P 190 (606)
. -.+.+|||+|.||++++..|.+-.--|
T Consensus 141 ~--~~~e~SAktg~nv~~~F~~la~~a~~p 168 (169)
T cd01892 141 P--PPLHFSSKLGDSSNELFTKLATAAQYP 168 (169)
T ss_pred C--CCEEEEEECCCCHHHHHHHHHHHHHCC
T ss_conf 9--666998327989899999999997678
No 203
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=99.31 E-value=8e-11 Score=92.15 Aligned_cols=150 Identities=19% Similarity=0.194 Sum_probs=98.5
Q ss_pred ECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHCCEEEEEEEEEEEECCCCCEEEEEEEECCCCCHHHHHHH
Q ss_conf 80138987788999999829805444431130586779871950523279999743788438999961787300279999
Q gi|254780321|r 17 VAHIDHGKSTLADRFIQHCRGLTEREMSSQVLDNMDIERERGITIKAQTVRLNYTSTDAKDYQLNLIDTPGHVDFTYEVS 96 (606)
Q Consensus 17 iaHvDhGKTTL~d~lL~~tg~i~~~~~~~~vlD~~~~EreRGITIka~~~~~~~~~~~~~~y~iNlIDTPGH~DF~~EV~ 96 (606)
||..+-|||||.-|++ +|.+..+-. -||-....+..+ ..+.+.+++++.||.|...|..-..
T Consensus 1 vGD~gVGKTsli~R~~--~~~F~~~y~---------------pTiGvd~~~~~~-~~~~~~i~l~iWDTAGqE~f~sl~~ 62 (200)
T smart00176 1 VGDGGTGKTTFVKRHL--TGEFEKKYV---------------ATLGVEVHPLVF-HTNRGPIRFNVWDTAGQEKFGGLRD 62 (200)
T ss_pred CCCCCCCHHHHHHHHH--CCCCCCCCC---------------CCEEEEEEEEEE-EECCEEEEEEEEECCCCCCCCCCCH
T ss_conf 9898878999999994--099999978---------------871489899999-9899899999998988700011026
Q ss_pred HHHHHCCEEEEEEECCCCCCHHHHHHHHHHH---HCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 9997302689999868788655899999999---7099679983267887532113388877555322321000111002
Q gi|254780321|r 97 RSLSACEGSLLVVDATQGVEAQTLANVYQAI---DNNHEIITVLNKADLPSADPDRVKKQIEETIGISTEDALLVSAKTG 173 (606)
Q Consensus 97 r~l~a~dgaiLvVdA~~Gvq~QT~~~~~~A~---~~~l~~I~viNKiD~~~A~~e~v~~ei~~~~g~~~~~ii~vSAktG 173 (606)
...+-++|||||.|.+.=--=.-+..|+.-+ ..++++|+|=||+|+.+.. |..+-..+-.-..-..+-+|||+|
T Consensus 63 ~yyr~a~~~IlvfDvt~~~SF~~l~~W~~~l~~~~~~ipiiLvGNK~DL~~r~---V~~e~~~~a~~~~~~y~EtSAKt~ 139 (200)
T smart00176 63 GYYIQGQCAIIMFDVTARVTYKNVPNWHRDLVRVCENIPIVLCGNKVDVKDRK---VKAKSITFHRKKNLQYYDISAKSN 139 (200)
T ss_pred HHCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCC---CCHHHHHHHHHCCCCEEEEECCCC
T ss_conf 55057878899963587789998999999999857999889999887574043---659999999987997898300469
Q ss_pred CCCCHHHHHHHHHH
Q ss_conf 23200678776321
Q gi|254780321|r 174 EGIPLLLERIVQQL 187 (606)
Q Consensus 174 ~GV~~LLd~Iv~~i 187 (606)
.||++++..+...+
T Consensus 140 ~Nv~e~F~~Lar~L 153 (200)
T smart00176 140 YNFEKPFLWLARKL 153 (200)
T ss_pred CCHHHHHHHHHHHH
T ss_conf 69799999999998
No 204
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=99.30 E-value=6.1e-11 Score=92.94 Aligned_cols=155 Identities=17% Similarity=0.215 Sum_probs=103.2
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHCCEEEEEEEEEEEECCCCCEEEEEEEECCCCCHHH
Q ss_conf 79998013898778899999982980544443113058677987195052327999974378843899996178730027
Q gi|254780321|r 13 NFSIVAHIDHGKSTLADRFIQHCRGLTEREMSSQVLDNMDIERERGITIKAQTVRLNYTSTDAKDYQLNLIDTPGHVDFT 92 (606)
Q Consensus 13 N~~IiaHvDhGKTTL~d~lL~~tg~i~~~~~~~~vlD~~~~EreRGITIka~~~~~~~~~~~~~~y~iNlIDTPGH~DF~ 92 (606)
.+.++|..+-|||+|.-|++ .+.+... ...++ |-+. ...+. .+++.+.++|.||.|+..|.
T Consensus 4 Kiv~lGd~~VGKTsli~r~~--~~~f~~~-~~pTi----------~~~~---~~~i~---i~~~~~~l~iwDtaGqe~~~ 64 (172)
T cd04141 4 KIVMLGAGGVGKSAVTMQFI--SHSFPDY-HDPTI----------EDAY---KQQAR---IDNEPALLDILDTAGQAEFT 64 (172)
T ss_pred EEEEECCCCCCHHHHHHHHH--HCCCCCC-CCCCC----------CCCE---EEEEE---ECCEEEEEEEEECCCCCCCC
T ss_conf 99999999977999999997--0989987-58842----------2203---69999---99999999999788851357
Q ss_pred HHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHH-----HCCCCEEEEECCCCCCCCCCCCHHHHHHH---HHHHHHHH
Q ss_conf 99999997302689999868788655899999999-----70996799832678875321133888775---55322321
Q gi|254780321|r 93 YEVSRSLSACEGSLLVVDATQGVEAQTLANVYQAI-----DNNHEIITVLNKADLPSADPDRVKKQIEE---TIGISTED 164 (606)
Q Consensus 93 ~EV~r~l~a~dgaiLvVdA~~Gvq~QT~~~~~~A~-----~~~l~~I~viNKiD~~~A~~e~v~~ei~~---~~g~~~~~ 164 (606)
.-....++-+||+|||.|.++=--=+....|+.-. ..++|+|+|-||+|+++.+. -..+|..+ -+++ .
T Consensus 65 ~l~~~~~r~a~~~ilvydvt~~~Sf~~~~~w~~~i~~~~~~~~~piilvGNK~DL~~~r~-Vs~~e~~~~a~~~~~---~ 140 (172)
T cd04141 65 AMRDQYMRCGEGFIICYSVTDRHSFQEASEFKKLITRVRLTEDIPLVLVGNKVDLESQRQ-VTTEEGRNLAREFNC---P 140 (172)
T ss_pred CCHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCHHHHCC-CCHHHHHHHHHHCCC---E
T ss_conf 451556427865688731688889999999999999972889986899850456676188-899999999998599---7
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHCC
Q ss_conf 00011100223200678776321000
Q gi|254780321|r 165 ALLVSAKTGEGIPLLLERIVQQLPSP 190 (606)
Q Consensus 165 ii~vSAktG~GV~~LLd~Iv~~iP~P 190 (606)
.+.+||++|.||+++++.++..+--.
T Consensus 141 f~EtSAk~~~nV~e~F~~l~~~i~~k 166 (172)
T cd04141 141 FFETSAALRHYIDDAFHGLVREIRRK 166 (172)
T ss_pred EEEECCCCCCCHHHHHHHHHHHHHHH
T ss_conf 99974788828899999999999863
No 205
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.30 E-value=1.4e-10 Score=90.46 Aligned_cols=158 Identities=18% Similarity=0.210 Sum_probs=101.6
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHCCEEEEEEEEEEEECCCCCEEEEEEEECCCCCHHH-
Q ss_conf 9998013898778899999982980544443113058677987195052327999974378843899996178730027-
Q gi|254780321|r 14 FSIVAHIDHGKSTLADRFIQHCRGLTEREMSSQVLDNMDIERERGITIKAQTVRLNYTSTDAKDYQLNLIDTPGHVDFT- 92 (606)
Q Consensus 14 ~~IiaHvDhGKTTL~d~lL~~tg~i~~~~~~~~vlD~~~~EreRGITIka~~~~~~~~~~~~~~y~iNlIDTPGH~DF~- 92 (606)
++++|-.+-|||+|+-|++ .+.+.+.- ..+ -|..+..+.+. .+++.|.+.|.||||...|.
T Consensus 3 ivvlG~~gVGKTsli~rf~--~~~F~~~y-~pT----------ig~~~~~k~v~-----~dg~~~~l~IwDtag~~~~~~ 64 (198)
T cd04142 3 VAVLGAPGVGKTAIVRQFL--AQEFPEEY-IPT----------EHRRLYRPAVV-----LSGRVYDLHILDVPNMQRYPG 64 (198)
T ss_pred EEEECCCCCCHHHHHHHHH--HCCCCCCC-CCC----------CCEEEEEEEEE-----ECCEEEEEEEEECCCCCCCCC
T ss_conf 9999979989999999997--19888874-784----------66167899999-----999999999995877304555
Q ss_pred ---HH----HHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHH-------HCCCCEEEEECCCCCCCCCCCCHHHHHHHHH
Q ss_conf ---99----999997302689999868788655899999999-------7099679983267887532113388877555
Q gi|254780321|r 93 ---YE----VSRSLSACEGSLLVVDATQGVEAQTLANVYQAI-------DNNHEIITVLNKADLPSADPDRVKKQIEETI 158 (606)
Q Consensus 93 ---~E----V~r~l~a~dgaiLvVdA~~Gvq~QT~~~~~~A~-------~~~l~~I~viNKiD~~~A~~e~v~~ei~~~~ 158 (606)
-| ..|+++-++|+|||-|-++---=+-+..|+.-+ ....|+|+|=||+|+++.+.-. .++...+.
T Consensus 65 tagqe~~~~r~~~ir~a~~~ilVydvt~~~SF~~v~~~~~~i~~~~~~~~~~~piiLVGNK~DL~~~R~v~-~~~~~~~a 143 (198)
T cd04142 65 TAGQEWMDPRFRGLRNSRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQRHRFAP-RHVLSVLV 143 (198)
T ss_pred CCCHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCC-HHHHHHHH
T ss_conf 65212355564401468889999988677888999999999999851479998289983454310035688-99999999
Q ss_pred HH-HHHHHHHHHHHCCCCCCHHHHHHHHHHHCC
Q ss_conf 32-232100011100223200678776321000
Q gi|254780321|r 159 GI-STEDALLVSAKTGEGIPLLLERIVQQLPSP 190 (606)
Q Consensus 159 g~-~~~~ii~vSAktG~GV~~LLd~Iv~~iP~P 190 (606)
.- -.-..+-+|||+|.||+++++.++..+-..
T Consensus 144 ~~~~~~~f~EtSAK~~~nV~~~F~~lvr~i~~~ 176 (198)
T cd04142 144 RKSWKCGYLECSAKYNWHILLLFKELLISATTR 176 (198)
T ss_pred HHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 851997699887889969899999999999860
No 206
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.27 E-value=2.3e-10 Score=89.04 Aligned_cols=151 Identities=25% Similarity=0.246 Sum_probs=97.2
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHCCEEEEE-EEEEEEECCCCCEEEEEEEECCCCCHH
Q ss_conf 7999801389877889999998298054444311305867798719505232-799997437884389999617873002
Q gi|254780321|r 13 NFSIVAHIDHGKSTLADRFIQHCRGLTEREMSSQVLDNMDIERERGITIKAQ-TVRLNYTSTDAKDYQLNLIDTPGHVDF 91 (606)
Q Consensus 13 N~~IiaHvDhGKTTL~d~lL~~tg~i~~~~~~~~vlD~~~~EreRGITIka~-~~~~~~~~~~~~~y~iNlIDTPGH~DF 91 (606)
-++++|..+-|||+|.-|++ .+.+.+.- --||... ...+. .+++.+.+.|.||+|+.+|
T Consensus 3 Ki~liGd~~VGKTsli~r~~--~~~F~~~y---------------~pTi~~~~~~~i~---~~~~~v~l~iwDtaG~e~~ 62 (175)
T cd01870 3 KLVIVGDGACGKTCLLIVFS--KDQFPEVY---------------VPTVFENYVADIE---VDGKQVELALWDTAGQEDY 62 (175)
T ss_pred EEEEECCCCCCHHHHHHHHH--CCCCCCCC---------------CCCEEEEEEEEEE---ECCEEEEEEEEECCCCCCC
T ss_conf 99999989966999999997--09899984---------------7843689999999---9999999999977766132
Q ss_pred HHHHHHHHHHCCEEEEEEECCCCCCHHHHH----HHHHHHH---CCCCEEEEECCCCCCCCCCC----------CHH-HH
Q ss_conf 799999997302689999868788655899----9999997---09967998326788753211----------338-88
Q gi|254780321|r 92 TYEVSRSLSACEGSLLVVDATQGVEAQTLA----NVYQAID---NNHEIITVLNKADLPSADPD----------RVK-KQ 153 (606)
Q Consensus 92 ~~EV~r~l~a~dgaiLvVdA~~Gvq~QT~~----~~~~A~~---~~l~~I~viNKiD~~~A~~e----------~v~-~e 153 (606)
..-....++-++++|||-|.++ .+|.. .|..-.. .+.|+|+|-||+|+.+.+.- .|. +|
T Consensus 63 ~~~~~~~~~~a~~~ilvydi~~---~~Sf~~~~~~w~~~i~~~~~~~piilVgnK~DL~~~~~~~~~~~~~~~~~V~~~e 139 (175)
T cd01870 63 DRLRPLSYPDTDVILMCFSIDS---PDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEE 139 (175)
T ss_pred CCCHHHHHCCCCEEEEEEECCC---HHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHCCCCCCHHH
T ss_conf 3240443148878999986598---7999999999999999729899899998724334332345666540255668999
Q ss_pred HHHHHH-HHHHHHHHHHHHCCCCCCHHHHHHHHH
Q ss_conf 775553-223210001110022320067877632
Q gi|254780321|r 154 IEETIG-ISTEDALLVSAKTGEGIPLLLERIVQQ 186 (606)
Q Consensus 154 i~~~~g-~~~~~ii~vSAktG~GV~~LLd~Iv~~ 186 (606)
-+++-. +.....+.+|||+|.||+++++.++..
T Consensus 140 g~~~a~~~~~~~f~EtSAk~~~nV~e~Fe~~~k~ 173 (175)
T cd01870 140 GRDMANKIGAFGYMECSAKTKEGVREVFEMATRA 173 (175)
T ss_pred HHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHH
T ss_conf 9999997499789997689997989999999998
No 207
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.26 E-value=2.2e-10 Score=89.22 Aligned_cols=153 Identities=16% Similarity=0.179 Sum_probs=102.8
Q ss_pred HHCEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHCCEEEEEEEEEEEECCCCCEEEEEEEECCCC
Q ss_conf 25317999801389877889999998298054444311305867798719505232799997437884389999617873
Q gi|254780321|r 9 SRIRNFSIVAHIDHGKSTLADRFIQHCRGLTEREMSSQVLDNMDIERERGITIKAQTVRLNYTSTDAKDYQLNLIDTPGH 88 (606)
Q Consensus 9 ~~IRN~~IiaHvDhGKTTL~d~lL~~tg~i~~~~~~~~vlD~~~~EreRGITIka~~~~~~~~~~~~~~y~iNlIDTPGH 88 (606)
++=.+|-|+|=-.+||||+..+|. .+.+.. .. -|+-.+..++.| +++.+++.|..|+
T Consensus 15 ~ke~~ililGLd~aGKTTil~~lk--~~~~~~---------~~-------PT~g~~~e~~~~-----~~~~~~~wDlgG~ 71 (184)
T smart00178 15 NKHAKILFLGLDNAGKTTLLHMLK--NDRLAQ---------HQ-------PTQHPTSEELAI-----GNIKFTTFDLGGH 71 (184)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHH--CCCCCC---------CC-------CCCCCCEEEEEE-----CCEEEEEEECCCC
T ss_conf 661479999658898899999980--699753---------05-------787886489999-----9999999988987
Q ss_pred CHHHHHHHHHHHHCCEEEEEEECCCCC-CHHHHHHHHHHH----HCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHH---
Q ss_conf 002799999997302689999868788-655899999999----709967998326788753211338887755532---
Q gi|254780321|r 89 VDFTYEVSRSLSACEGSLLVVDATQGV-EAQTLANVYQAI----DNNHEIITVLNKADLPSADPDRVKKQIEETIGI--- 160 (606)
Q Consensus 89 ~DF~~EV~r~l~a~dgaiLvVdA~~Gv-q~QT~~~~~~A~----~~~l~~I~viNKiD~~~A~~e~v~~ei~~~~g~--- 160 (606)
.-|-.-=.+-..-|+|.|.|||+++-- ..+.+..+...+ -.+.|++++.||.|+|+|-.. +||.+.+++
T Consensus 72 ~~~R~lW~~Yy~~~~~iIfVVDssD~~r~~eak~~L~~ll~~~~l~~~PlLilaNKqDl~~a~~~---~ei~~~L~L~~~ 148 (184)
T smart00178 72 QQARRLWKDYFPEVNGIVYLVDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAPYAASE---DELRYALGLTNT 148 (184)
T ss_pred HHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCH---HHHHHHHCCHHH
T ss_conf 77889999882167589999726868899999999999864676559709999975677789999---999988195123
Q ss_pred ---------HHHHHHHHHHHCCCCCCHHHHHHHHHH
Q ss_conf ---------232100011100223200678776321
Q gi|254780321|r 161 ---------STEDALLVSAKTGEGIPLLLERIVQQL 187 (606)
Q Consensus 161 ---------~~~~ii~vSAktG~GV~~LLd~Iv~~i 187 (606)
.+-.+.+|||.+|.|+++-|+=+.+++
T Consensus 149 ~~~~~~~~~r~~~i~~~SA~tG~Gl~egl~WLs~~i 184 (184)
T smart00178 149 TGSKGKVGVRPLEVFMCSVVRRMGYGEGFKWLSQYI 184 (184)
T ss_pred HCCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHC
T ss_conf 265576677631999735607978699999998409
No 208
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.26 E-value=1.8e-10 Score=89.84 Aligned_cols=154 Identities=21% Similarity=0.282 Sum_probs=96.9
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHCCEEEEEEEEEEEECCCCCEEEEEEEECCCCCHHHH
Q ss_conf 99980138987788999999829805444431130586779871950523279999743788438999961787300279
Q gi|254780321|r 14 FSIVAHIDHGKSTLADRFIQHCRGLTEREMSSQVLDNMDIERERGITIKAQTVRLNYTSTDAKDYQLNLIDTPGHVDFTY 93 (606)
Q Consensus 14 ~~IiaHvDhGKTTL~d~lL~~tg~i~~~~~~~~vlD~~~~EreRGITIka~~~~~~~~~~~~~~y~iNlIDTPGH~DF~~ 93 (606)
++++|-..-|||+|.-|++ ++.+...- ..++ |.+. .+ .+. .+++.+.++|.||+|...|..
T Consensus 2 iv~vGd~~VGKTsli~rf~--~~~f~~~y-~~T~----------~~~~-~~--~~~---v~~~~~~l~iwDtaG~e~~~~ 62 (165)
T cd04146 2 IAVLGASGVGKSALVVRFL--TKRFIGEY-DPNL----------ESLY-SR--QVT---IDGEQVSLEILDTAGQQQADT 62 (165)
T ss_pred EEEECCCCCCHHHHHHHHH--HCCCCCCC-CCCC----------CCEE-EE--EEE---ECCEEEEEEEEECCCCCCCCH
T ss_conf 9999989977899999997--49899875-9955----------6305-79--999---999999999992898501220
Q ss_pred H-HHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHH-H-----CCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 9-999997302689999868788655899999999-7-----09967998326788753211338887755532232100
Q gi|254780321|r 94 E-VSRSLSACEGSLLVVDATQGVEAQTLANVYQAI-D-----NNHEIITVLNKADLPSADPDRVKKQIEETIGISTEDAL 166 (606)
Q Consensus 94 E-V~r~l~a~dgaiLvVdA~~Gvq~QT~~~~~~A~-~-----~~l~~I~viNKiD~~~A~~e~v~~ei~~~~g~~~~~ii 166 (606)
- ..+.++-+||+|||-|.++----+....|+.-+ + .++|+|+|=||+|+++.+. --.+|.+++-.--.-..+
T Consensus 63 ~~~~~~~~~a~~~ilvydit~~~Sf~~~~~~~~~i~~~~~~~~~~piilVGNK~DL~~~r~-Vs~ee~~~~a~~~~~~f~ 141 (165)
T cd04146 63 EQLERSIRWADGFVLVYSITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLLHYRQ-VSTEEGEKLASELGCLFF 141 (165)
T ss_pred HHHHHHCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCC-CCHHHHHHHHHHCCCEEE
T ss_conf 1255430458789999865888999999999999999846699953998445545210367-799999999998199899
Q ss_pred HHHHHCC-CCCCHHHHHHHHHH
Q ss_conf 0111002-23200678776321
Q gi|254780321|r 167 LVSAKTG-EGIPLLLERIVQQL 187 (606)
Q Consensus 167 ~vSAktG-~GV~~LLd~Iv~~i 187 (606)
.+|||+| .||+++++.++..+
T Consensus 142 E~SAk~~~~~V~~~F~~l~~~i 163 (165)
T cd04146 142 EVSAAEDYDGVHSVFHELCREV 163 (165)
T ss_pred EEECCCCCCCHHHHHHHHHHHH
T ss_conf 9752087826999999999996
No 209
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.26 E-value=4.1e-10 Score=87.35 Aligned_cols=160 Identities=19% Similarity=0.190 Sum_probs=101.3
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHCCEEEEEEEEEEEECCCCCEEEEEEEECCCCCHH
Q ss_conf 17999801389877889999998298054444311305867798719505232799997437884389999617873002
Q gi|254780321|r 12 RNFSIVAHIDHGKSTLADRFIQHCRGLTEREMSSQVLDNMDIERERGITIKAQTVRLNYTSTDAKDYQLNLIDTPGHVDF 91 (606)
Q Consensus 12 RN~~IiaHvDhGKTTL~d~lL~~tg~i~~~~~~~~vlD~~~~EreRGITIka~~~~~~~~~~~~~~y~iNlIDTPGH~DF 91 (606)
|-+.++|...-|||+|.-|+. .|.+.+.- --||-..-.. .+ ..+++.+.++|.||.|+..|
T Consensus 1 ~KivlvGd~~VGKTsli~r~~--~~~F~~~y---------------~~Ti~~~~~~-~~-~v~~~~v~l~iwDTaGqe~~ 61 (189)
T cd04134 1 RKVVVLGDGACGKTSLLNVFT--RGYFPQVY---------------EPTVFENYVH-DI-FVDGLHIELSLWDTAGQEEF 61 (189)
T ss_pred CEEEEECCCCCCHHHHHHHHH--CCCCCCCC---------------CCCEEEEEEE-EE-EECCEEEEEEEEECCCCCCC
T ss_conf 989999979976999999997--09999986---------------8837899999-99-99999999999847785000
Q ss_pred HHHHHHHHHHCCEEEEEEECCCCCCHHHHH-HHHHHHH---CCCCEEEEECCCCCCCCCCCCHH--HHH------HHHHH
Q ss_conf 799999997302689999868788655899-9999997---09967998326788753211338--887------75553
Q gi|254780321|r 92 TYEVSRSLSACEGSLLVVDATQGVEAQTLA-NVYQAID---NNHEIITVLNKADLPSADPDRVK--KQI------EETIG 159 (606)
Q Consensus 92 ~~EV~r~l~a~dgaiLvVdA~~Gvq~QT~~-~~~~A~~---~~l~~I~viNKiD~~~A~~e~v~--~ei------~~~~g 159 (606)
..-.....+-+|++|||.|-+.=--=+... .|..-.. .++|+|+|-||+|+.+.+.+... .+. ++-..
T Consensus 62 ~~i~~~~y~~a~~~ilvydi~~~~Sf~~v~~~w~~~i~~~~~~~piiLVgnK~DL~~~~~~~~~~~~~~~~~is~~eg~~ 141 (189)
T cd04134 62 DRLRSLSYADTDVIMLCFSVDSPDSLENVESKWLGEIREHCPGVKLVLVALKCDLREARNERDDLQRYGKHTISYEEGLA 141 (189)
T ss_pred CHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECHHCCCCHHHHHHHHHHCCCCCCHHHHHH
T ss_conf 03556764378645999978987899999999999999749799789999880046532356777663046658999999
Q ss_pred H----HHHHHHHHHHHCCCCCCHHHHHHHHHHHCC
Q ss_conf 2----232100011100223200678776321000
Q gi|254780321|r 160 I----STEDALLVSAKTGEGIPLLLERIVQQLPSP 190 (606)
Q Consensus 160 ~----~~~~ii~vSAktG~GV~~LLd~Iv~~iP~P 190 (606)
+ .+-..+.+|||+|.||+++++.+...+-.+
T Consensus 142 ~Ak~~~~~~y~EtSAkt~~nV~e~F~~lar~~l~~ 176 (189)
T cd04134 142 VAKRINALRYLECSAKLNRGVNEAFTEAARVALNV 176 (189)
T ss_pred HHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHC
T ss_conf 99982997899968067949899999999999735
No 210
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.26 E-value=2.1e-10 Score=89.30 Aligned_cols=165 Identities=22% Similarity=0.316 Sum_probs=118.9
Q ss_pred CCCCCHHHCEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHCCEEEEEEEEEEEECCCCCEEEEEE
Q ss_conf 88998525317999801389877889999998298054444311305867798719505232799997437884389999
Q gi|254780321|r 3 KKPTPLSRIRNFSIVAHIDHGKSTLADRFIQHCRGLTEREMSSQVLDNMDIERERGITIKAQTVRLNYTSTDAKDYQLNL 82 (606)
Q Consensus 3 ~~~~p~~~IRN~~IiaHvDhGKTTL~d~lL~~tg~i~~~~~~~~vlD~~~~EreRGITIka~~~~~~~~~~~~~~y~iNl 82 (606)
.+..|.+..--||.+|-...|||||.-+|.-.-+ +.+... .=|-|- .+.|...+++ +.|
T Consensus 16 ~~~~P~~~~~EIaF~GRSNVGKSSlIN~l~~~k~-LArtSk------------tPGrTq-----~iNff~~~~~---~~l 74 (200)
T COG0218 16 IKQYPEDDLPEIAFAGRSNVGKSSLINALTNQKN-LARTSK------------TPGRTQ-----LINFFEVDDE---LRL 74 (200)
T ss_pred HHHCCCCCCCEEEEECCCCCCHHHHHHHHHCCCC-EEECCC------------CCCCCC-----EEEEEEECCC---EEE
T ss_conf 7568998896799981686668999999967863-556579------------998542-----3679983585---799
Q ss_pred EECCCCC----------HHHHHHHHHHH---HCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCC-CCCC
Q ss_conf 6178730----------02799999997---30268999986878865589999999970996799832678875-3211
Q gi|254780321|r 83 IDTPGHV----------DFTYEVSRSLS---ACEGSLLVVDATQGVEAQTLANVYQAIDNNHEIITVLNKADLPS-ADPD 148 (606)
Q Consensus 83 IDTPGH~----------DF~~EV~r~l~---a~dgaiLvVdA~~Gvq~QT~~~~~~A~~~~l~~I~viNKiD~~~-A~~e 148 (606)
+|-|||- .+...+.+-|. -..++++|||+..++...-+..+..+.+.+++++++.||+|+-. ....
T Consensus 75 VDlPGYGyAkv~k~~~e~w~~~i~~YL~~R~~L~~vvlliD~r~~~~~~D~em~~~l~~~~i~~~vv~tK~DKi~~~~~~ 154 (200)
T COG0218 75 VDLPGYGYAKVPKEVKEKWKKLIEEYLEKRANLKGVVLLIDARHPPKDLDREMIEFLLELGIPVIVVLTKADKLKKSERN 154 (200)
T ss_pred EECCCCCCCCCCHHHHHHHHHHHHHHHHHCHHHEEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHH
T ss_conf 81799540328999999999999999963522248999997899986879999999997599869999711037746788
Q ss_pred CHHHHHHHHHHHHHHH---HHHHHHHCCCCCCHHHHHHHHHHH
Q ss_conf 3388877555322321---000111002232006787763210
Q gi|254780321|r 149 RVKKQIEETIGISTED---ALLVSAKTGEGIPLLLERIVQQLP 188 (606)
Q Consensus 149 ~v~~ei~~~~g~~~~~---ii~vSAktG~GV~~LLd~Iv~~iP 188 (606)
+....+.+.++++..+ ++..|+.++.|+++|.+.|.+.+-
T Consensus 155 k~l~~v~~~l~~~~~~~~~~~~~ss~~k~Gi~~l~~~i~~~~~ 197 (200)
T COG0218 155 KQLNKVAEELKKPPPDDQWVVLFSSLKKKGIDELKAKILEWLK 197 (200)
T ss_pred HHHHHHHHHHCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 8999999984689886643999865454489999999999864
No 211
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.24 E-value=3.3e-10 Score=87.97 Aligned_cols=157 Identities=23% Similarity=0.281 Sum_probs=101.2
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHCCEEEEEEEEEEEECCCCCEEEEEEEECCCCCHHH
Q ss_conf 79998013898778899999982980544443113058677987195052327999974378843899996178730027
Q gi|254780321|r 13 NFSIVAHIDHGKSTLADRFIQHCRGLTEREMSSQVLDNMDIERERGITIKAQTVRLNYTSTDAKDYQLNLIDTPGHVDFT 92 (606)
Q Consensus 13 N~~IiaHvDhGKTTL~d~lL~~tg~i~~~~~~~~vlD~~~~EreRGITIka~~~~~~~~~~~~~~y~iNlIDTPGH~DF~ 92 (606)
-+.++|-..-|||+|+-|++ .+.+.+... .++ |.....+.+.+ .+++..+++|.||+|...|.
T Consensus 4 KivllGd~~VGKTsL~~rf~--~~~F~~~~~-~Ti----------g~df~~k~i~i----~dg~~v~l~IwDTaGqe~~~ 66 (211)
T cd04111 4 RLIVIGDSTVGKSSLLKRFT--EGRFAEVSD-PTV----------GVDFFSRLIEI----EPGVRIKLQLWDTAGQERFR 66 (211)
T ss_pred EEEEECCCCCCHHHHHHHHH--HCCCCCCCC-CCC----------CEEEEEEEEEE----CCCCEEEEEEEECCCCCCCC
T ss_conf 99999999961999999998--199999868-720----------16889989997----79959999999798863456
Q ss_pred HHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHH-HHHC----CCCEEEEECCCCCCCCCCCCH-HHHHHHHHHHHHHHHH
Q ss_conf 999999973026899998687886558999999-9970----996799832678875321133-8887755532232100
Q gi|254780321|r 93 YEVSRSLSACEGSLLVVDATQGVEAQTLANVYQ-AIDN----NHEIITVLNKADLPSADPDRV-KKQIEETIGISTEDAL 166 (606)
Q Consensus 93 ~EV~r~l~a~dgaiLvVdA~~Gvq~QT~~~~~~-A~~~----~l~~I~viNKiD~~~A~~e~v-~~ei~~~~g~~~~~ii 166 (606)
.-.....+-++|+|||.|.+.----+....|+. +..+ .+++|+|=||+|+.+-+ .| .+|.+++-.--.-..+
T Consensus 67 si~~~yyr~a~g~ilVyDvt~~~SF~~l~~W~~ei~~~~~~~~~~iiLVGNK~DL~~~R--~Vs~ee~~~~A~~~~~~f~ 144 (211)
T cd04111 67 SITRSYYRNSVGVLLVFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDLESQR--QVTREEAEKLAKDLGMKYI 144 (211)
T ss_pred CCHHHHHHHCCEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCHHHHC--CCCHHHHHHHHHHHCCEEE
T ss_conf 44287742124468971477779999999999999997498885389887423128567--8899999999998399799
Q ss_pred HHHHHCCCCCCHHHHHHHHHHH
Q ss_conf 0111002232006787763210
Q gi|254780321|r 167 LVSAKTGEGIPLLLERIVQQLP 188 (606)
Q Consensus 167 ~vSAktG~GV~~LLd~Iv~~iP 188 (606)
.+|||+|.||+++++.+...+-
T Consensus 145 EtSAK~g~nV~e~F~~la~~i~ 166 (211)
T cd04111 145 ETSARTGDNVEEAFELLTQEIY 166 (211)
T ss_pred EECCCCCCCHHHHHHHHHHHHH
T ss_conf 9759998198999999999999
No 212
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=99.24 E-value=7e-10 Score=85.83 Aligned_cols=155 Identities=21% Similarity=0.209 Sum_probs=97.0
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHCCEEEEEEEEEEEECCCCCEEEEEEEECCCCCHHHH
Q ss_conf 99980138987788999999829805444431130586779871950523279999743788438999961787300279
Q gi|254780321|r 14 FSIVAHIDHGKSTLADRFIQHCRGLTEREMSSQVLDNMDIERERGITIKAQTVRLNYTSTDAKDYQLNLIDTPGHVDFTY 93 (606)
Q Consensus 14 ~~IiaHvDhGKTTL~d~lL~~tg~i~~~~~~~~vlD~~~~EreRGITIka~~~~~~~~~~~~~~y~iNlIDTPGH~DF~~ 93 (606)
+.++|-.+-|||+|.-|++ .+.+...- --||-. ..+... ..+++.+.++|.||+|+.+|..
T Consensus 4 ivlvGd~~VGKTsli~r~~--~~~f~~~~---------------~~Ti~~-~~~~~i-~~~~~~v~l~iwDtaGqe~~~~ 64 (174)
T cd01871 4 CVVVGDGAVGKTCLLISYT--TNAFPGEY---------------IPTVFD-NYSANV-MVDGKPVNLGLWDTAGQEDYDR 64 (174)
T ss_pred EEEECCCCCCHHHHHHHHH--HCCCCCCC---------------CCEEEE-EEEEEE-EECCEEEEEEEECCCCCCCCHH
T ss_conf 9998999986999999997--39999986---------------883788-767999-9999999999986999724067
Q ss_pred HHHHHHHHCCEEEEEEECCCCCCHHHH-HHHHHHHH---CCCCEEEEECCCCCCCCCC--CC--------H-HHHHHHHH
Q ss_conf 999999730268999986878865589-99999997---0996799832678875321--13--------3-88877555
Q gi|254780321|r 94 EVSRSLSACEGSLLVVDATQGVEAQTL-ANVYQAID---NNHEIITVLNKADLPSADP--DR--------V-KKQIEETI 158 (606)
Q Consensus 94 EV~r~l~a~dgaiLvVdA~~Gvq~QT~-~~~~~A~~---~~l~~I~viNKiD~~~A~~--e~--------v-~~ei~~~~ 158 (606)
-.....+-+|++|||-|-++---=+.. ..|+..+. .+.|+|+|=||+|+...+. +. + .+|-..+-
T Consensus 65 ~~~~~~~~a~~~ilvydi~~~~SF~~i~~~w~~~i~~~~~~~piiLVGnK~DL~~~~~~~~~~~~~~~~~vs~~eg~~~a 144 (174)
T cd01871 65 LRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMA 144 (174)
T ss_pred HHHHHHHHCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHCCCCCCCHHHHHHHH
T ss_conf 88998740668999986798788999999999999985889997987473013100456778865146775899999999
Q ss_pred -HHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q ss_conf -32232100011100223200678776321
Q gi|254780321|r 159 -GISTEDALLVSAKTGEGIPLLLERIVQQL 187 (606)
Q Consensus 159 -g~~~~~ii~vSAktG~GV~~LLd~Iv~~i 187 (606)
.+..-..+-+|||+|.||+++++.++..+
T Consensus 145 ~~~~~~~f~EtSAk~~~nV~e~F~~lir~i 174 (174)
T cd01871 145 KEIGAVKYLECSALTQKGLKTVFDEAIRAV 174 (174)
T ss_pred HHCCCCEEEECCCCCCCCHHHHHHHHHHHC
T ss_conf 875997899918788959799999999519
No 213
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=99.24 E-value=4.8e-10 Score=86.93 Aligned_cols=153 Identities=18% Similarity=0.182 Sum_probs=97.2
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHCCEEEEE-EEEEEEECCCCCEEEEEEEECCCCCHHH
Q ss_conf 999801389877889999998298054444311305867798719505232-7999974378843899996178730027
Q gi|254780321|r 14 FSIVAHIDHGKSTLADRFIQHCRGLTEREMSSQVLDNMDIERERGITIKAQ-TVRLNYTSTDAKDYQLNLIDTPGHVDFT 92 (606)
Q Consensus 14 ~~IiaHvDhGKTTL~d~lL~~tg~i~~~~~~~~vlD~~~~EreRGITIka~-~~~~~~~~~~~~~y~iNlIDTPGH~DF~ 92 (606)
+.++|...-|||+|+-|+. .+.+..... =||... ...+ ..+++.+.++|.||+|+.+|.
T Consensus 4 ivllGd~~VGKTsL~~rf~--~~~F~~~~~---------------pTi~~~~~~~i---~v~~~~~~l~iwDTaG~e~~~ 63 (176)
T cd04133 4 CVTVGDGAVGKTCMLICYT--SNKFPTDYI---------------PTVFDNFSANV---SVDGNTVNLGLWDTAGQEDYN 63 (176)
T ss_pred EEEECCCCCCHHHHHHHHH--HCCCCCCCC---------------CCEEEEEEEEE---EECCEEEEEEEEECCCCCCCC
T ss_conf 9998999977999999996--598999867---------------85358999999---999989999999799976542
Q ss_pred HHHHHHHHHCCEEEEEEECCCCCCHHHHH----HHHHHH---HCCCCEEEEECCCCCCCCCCC--------CH-HHHHHH
Q ss_conf 99999997302689999868788655899----999999---709967998326788753211--------33-888775
Q gi|254780321|r 93 YEVSRSLSACEGSLLVVDATQGVEAQTLA----NVYQAI---DNNHEIITVLNKADLPSADPD--------RV-KKQIEE 156 (606)
Q Consensus 93 ~EV~r~l~a~dgaiLvVdA~~Gvq~QT~~----~~~~A~---~~~l~~I~viNKiD~~~A~~e--------~v-~~ei~~ 156 (606)
.-.....+-++++|||-|-+. .+|.. .|..-+ .-+.|+|+|-||+|+.+.+.. .+ .+|-++
T Consensus 64 ~l~~~~y~~a~~~ilvydi~~---~~Sf~~~~~~w~~~~~~~~~~~piilvGnK~DL~~~r~~~~~~~~~~~Vs~~e~~~ 140 (176)
T cd04133 64 RLRPLSYRGADVFVLAFSLIS---RASYENVLKKWVPELRHYAPNVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEE 140 (176)
T ss_pred HHHHHHHCCCCEEEEEEECCC---HHHHHHHHHHHHHHHHHHCCCCCEEEEEECHHHHHCHHHHHHCCCCCCCCHHHHHH
T ss_conf 468987267875799997898---78999999999999998684998899998632021222333302467777999999
Q ss_pred HH-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHC
Q ss_conf 55-3223210001110022320067877632100
Q gi|254780321|r 157 TI-GISTEDALLVSAKTGEGIPLLLERIVQQLPS 189 (606)
Q Consensus 157 ~~-g~~~~~ii~vSAktG~GV~~LLd~Iv~~iP~ 189 (606)
+- .+.....+-+|||+|.||+++++.++..+=-
T Consensus 141 ~a~~~~~~~y~EtSAk~~~nV~e~F~~~~~~il~ 174 (176)
T cd04133 141 LRKQIGAAAYIECSSKTQQNVKAVFDAAIKVVLQ 174 (176)
T ss_pred HHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHC
T ss_conf 9997799789994789880989999999999808
No 214
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.24 E-value=4.4e-10 Score=87.16 Aligned_cols=151 Identities=20% Similarity=0.199 Sum_probs=95.2
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHCCEEEE-EEEEEEEECCCCCEEEEEEEECCCCCHHH
Q ss_conf 99980138987788999999829805444431130586779871950523-27999974378843899996178730027
Q gi|254780321|r 14 FSIVAHIDHGKSTLADRFIQHCRGLTEREMSSQVLDNMDIERERGITIKA-QTVRLNYTSTDAKDYQLNLIDTPGHVDFT 92 (606)
Q Consensus 14 ~~IiaHvDhGKTTL~d~lL~~tg~i~~~~~~~~vlD~~~~EreRGITIka-~~~~~~~~~~~~~~y~iNlIDTPGH~DF~ 92 (606)
+.++|..+-|||+|.-|++ .+.+...- . -|+-. ....+. .+++.+.++|.||+|+.+|.
T Consensus 3 vvlvGd~~VGKTsli~r~~--~~~F~~~y-~--------------pT~~~~~~~~i~---~~~~~v~l~iwDtaG~e~~~ 62 (173)
T cd04130 3 CVLVGDGAVGKTSLIVSYT--TNGYPTEY-V--------------PTAFDNFSVVVL---VDGKPVRLQLCDTAGQDEFD 62 (173)
T ss_pred EEEECCCCCCHHHHHHHHH--HCCCCCCC-C--------------CCEEEEEEEEEE---ECCEEEEEEEEECCCCCCCC
T ss_conf 9999989978899999996--19999985-7--------------835899999999---99999999999899873443
Q ss_pred HHHHHHHHHCCEEEEEEECCCCCCHHHHH-HHHHHHH---CCCCEEEEECCCCCCCCCC---------CC-HH-HHHHHH
Q ss_conf 99999997302689999868788655899-9999997---0996799832678875321---------13-38-887755
Q gi|254780321|r 93 YEVSRSLSACEGSLLVVDATQGVEAQTLA-NVYQAID---NNHEIITVLNKADLPSADP---------DR-VK-KQIEET 157 (606)
Q Consensus 93 ~EV~r~l~a~dgaiLvVdA~~Gvq~QT~~-~~~~A~~---~~l~~I~viNKiD~~~A~~---------e~-v~-~ei~~~ 157 (606)
.-....++-+|++|||-|-+.=--=+-+. .|..... .+.|+|+|=||+|+..... ++ |. +|...+
T Consensus 63 ~l~~~~~~~a~~~ilvydv~~~~Sf~~l~~~w~~~i~~~~~~~piilvGnK~DL~~~~~~~~~~~~~~~r~Vs~~e~~~~ 142 (173)
T cd04130 63 KLRPLCYPDTDVFLLCFSVVNPSSFQNISEKWIPEIRKHNPKAPIILVGTQADLRTDVNVLIQLARYGEKPVSQSRAKAL 142 (173)
T ss_pred HHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCHHHHHHHHHCCCCCCCHHHHHHH
T ss_conf 45676613787899999659878899999999999996098998899988701100133554443325755789999999
Q ss_pred H-HHHHHHHHHHHHHCCCCCCHHHHHHH
Q ss_conf 5-32232100011100223200678776
Q gi|254780321|r 158 I-GISTEDALLVSAKTGEGIPLLLERIV 184 (606)
Q Consensus 158 ~-g~~~~~ii~vSAktG~GV~~LLd~Iv 184 (606)
- .+..-..+-+|||+|.||+++++.++
T Consensus 143 a~~~~~~~y~EtSAkt~~nV~e~Fe~~i 170 (173)
T cd04130 143 AEKIGACEYIECSALTQKNLKEVFDTAI 170 (173)
T ss_pred HHHCCCCEEEEECCCCCCCHHHHHHHHH
T ss_conf 9984996899968688969799999998
No 215
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.23 E-value=5.2e-10 Score=86.70 Aligned_cols=153 Identities=20% Similarity=0.236 Sum_probs=97.8
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHCCEEEEEEEEEEEECCCCCEEEEEEEECCCCCHHH
Q ss_conf 79998013898778899999982980544443113058677987195052327999974378843899996178730027
Q gi|254780321|r 13 NFSIVAHIDHGKSTLADRFIQHCRGLTEREMSSQVLDNMDIERERGITIKAQTVRLNYTSTDAKDYQLNLIDTPGHVDFT 92 (606)
Q Consensus 13 N~~IiaHvDhGKTTL~d~lL~~tg~i~~~~~~~~vlD~~~~EreRGITIka~~~~~~~~~~~~~~y~iNlIDTPGH~DF~ 92 (606)
-+.++|..+.|||+|.-|++ .+.+.+.- ..++.|. ....+. .+++.+.++|.||+|+.+|.
T Consensus 2 Kiv~vGd~~VGKTsli~rf~--~~~f~~~y-~pTi~~~-------------~~~~i~---v~~~~~~l~i~DTaG~e~~~ 62 (174)
T cd04135 2 KCVVVGDGAVGKTCLLMSYA--NDAFPEEY-VPTVFDH-------------YAVSVT---VGGKQYLLGLYDTAGQEDYD 62 (174)
T ss_pred EEEEECCCCCCHHHHHHHHH--HCCCCCCC-CCEEEEE-------------EEEEEE---ECCEEEEEEEEECCCCCCCH
T ss_conf 89999989985999999996--29899886-8857520-------------227999---99999999999797640315
Q ss_pred HHHHHHHHHCCEEEEEEECCCCCCHHHHHH----HHHHH---HCCCCEEEEECCCCCCCCC----------CCCH-HHHH
Q ss_conf 999999973026899998687886558999----99999---7099679983267887532----------1133-8887
Q gi|254780321|r 93 YEVSRSLSACEGSLLVVDATQGVEAQTLAN----VYQAI---DNNHEIITVLNKADLPSAD----------PDRV-KKQI 154 (606)
Q Consensus 93 ~EV~r~l~a~dgaiLvVdA~~Gvq~QT~~~----~~~A~---~~~l~~I~viNKiD~~~A~----------~e~v-~~ei 154 (606)
.-....++-+++++||-|-++ .+|..+ |..-. ..++|+|+|=||+|+.... ...| .+|-
T Consensus 63 ~~~~~~~~~a~~~ilvydi~~---~~Sf~~~~~~w~~~~~~~~~~~piilvgnK~DL~~~~~~~~~~~~~~~r~Vs~eeg 139 (174)
T cd04135 63 RLRPLSYPMTDVFLICFSVVN---PASFQNVKEEWVPELKEYAPNVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQG 139 (174)
T ss_pred HHHHHHHCCCCEEEEEEECCC---HHHHHHHHHHHHHHHHHHCCCCCEEEEEECHHHCCCHHHHHHHCCCCCCCCCHHHH
T ss_conf 565998557876789843797---78899999999999998684998899968523004434554530045766399999
Q ss_pred HHHH-HHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q ss_conf 7555-32232100011100223200678776321
Q gi|254780321|r 155 EETI-GISTEDALLVSAKTGEGIPLLLERIVQQL 187 (606)
Q Consensus 155 ~~~~-g~~~~~ii~vSAktG~GV~~LLd~Iv~~i 187 (606)
+.+- .+...-.+.+|||+|.||+++++.++..+
T Consensus 140 ~~~A~~~g~~~f~E~SAkt~~nV~e~F~~~i~~i 173 (174)
T cd04135 140 QKLAKEIGAHCYVECSALTQKGLKTVFDEAILAI 173 (174)
T ss_pred HHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHH
T ss_conf 9999977998999905487949899999999997
No 216
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=99.23 E-value=9.2e-10 Score=85.01 Aligned_cols=158 Identities=21% Similarity=0.278 Sum_probs=98.9
Q ss_pred CEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHCCEEEEEEEEEEEECCCCCEEEEEEEECCCCCH
Q ss_conf 31799980138987788999999829805444431130586779871950523279999743788438999961787300
Q gi|254780321|r 11 IRNFSIVAHIDHGKSTLADRFIQHCRGLTEREMSSQVLDNMDIERERGITIKAQTVRLNYTSTDAKDYQLNLIDTPGHVD 90 (606)
Q Consensus 11 IRN~~IiaHvDhGKTTL~d~lL~~tg~i~~~~~~~~vlD~~~~EreRGITIka~~~~~~~~~~~~~~y~iNlIDTPGH~D 90 (606)
+=.++++|....|||+|.-|++ .+.+.+.- ..++ |+....+.+. .+++.+.+++.||+|...
T Consensus 2 ~~Kiv~lGd~~VGKTsli~r~~--~~~F~~~~-~~Ti----------g~d~~~k~i~-----v~~~~v~l~iwDtaG~e~ 63 (170)
T cd04115 2 IFKIIVIGDSNVGKTCLTYRFC--AGRFPERT-EATI----------GVDFRERTVE-----IDGERIKVQLWDTAGQER 63 (170)
T ss_pred EEEEEEECCCCCCHHHHHHHHH--CCCCCCCC-CCCE----------EEEEEEEEEE-----ECCEEEEEEEEECCCCHH
T ss_conf 6999999979977999999995--39889987-8863----------0787899999-----999999999997788530
Q ss_pred HH-HHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHH-HH----CCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 27-9999999730268999986878865589999999-97----099679983267887532113388877555322321
Q gi|254780321|r 91 FT-YEVSRSLSACEGSLLVVDATQGVEAQTLANVYQA-ID----NNHEIITVLNKADLPSADPDRVKKQIEETIGISTED 164 (606)
Q Consensus 91 F~-~EV~r~l~a~dgaiLvVdA~~Gvq~QT~~~~~~A-~~----~~l~~I~viNKiD~~~A~~e~v~~ei~~~~g~~~~~ 164 (606)
|. .-.....+-+||+|||.|.+.=--=+....|..- .+ ..+|+++|-||+|+...+. -..+|.+++-.--.-.
T Consensus 64 ~~~s~~~~~~~~a~~~ilvydvt~~~Sf~~~~~w~~~i~~~~~~~~~p~vlVGNK~DL~~~r~-Vs~~e~~~~a~~~~~~ 142 (170)
T cd04115 64 FRKSMVQHYYRNVHAVVFVYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLREQIQ-VPTDLAQRFADAHSMP 142 (170)
T ss_pred HHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCHHHCC-CCHHHHHHHHHHCCCE
T ss_conf 567778998457735799950474767999999999999865888997999999821341178-7999999999977999
Q ss_pred HHHHHHH---CCCCCCHHHHHHHHHH
Q ss_conf 0001110---0223200678776321
Q gi|254780321|r 165 ALLVSAK---TGEGIPLLLERIVQQL 187 (606)
Q Consensus 165 ii~vSAk---tG~GV~~LLd~Iv~~i 187 (606)
.+.+||| +|.||++++..+...+
T Consensus 143 ~~E~SAK~~~~~~nV~~~F~~la~~i 168 (170)
T cd04115 143 LFETSAKDPSENDHVEAIFMTLAHKL 168 (170)
T ss_pred EEEECCCCCCCCCCHHHHHHHHHHHH
T ss_conf 99988899851708899999999996
No 217
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=99.23 E-value=8.1e-10 Score=85.41 Aligned_cols=152 Identities=16% Similarity=0.188 Sum_probs=97.1
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHCCEEEEEEEEEEEECCCCCEEEEEEEECCCCCHHH
Q ss_conf 79998013898778899999982980544443113058677987195052327999974378843899996178730027
Q gi|254780321|r 13 NFSIVAHIDHGKSTLADRFIQHCRGLTEREMSSQVLDNMDIERERGITIKAQTVRLNYTSTDAKDYQLNLIDTPGHVDFT 92 (606)
Q Consensus 13 N~~IiaHvDhGKTTL~d~lL~~tg~i~~~~~~~~vlD~~~~EreRGITIka~~~~~~~~~~~~~~y~iNlIDTPGH~DF~ 92 (606)
.+.++|..+-|||+|.-|++ .+.+.... .-||... .+... ..+++.+.++|.||+|+.+|.
T Consensus 3 Kvv~lGd~~VGKTsli~r~~--~~~f~~~y---------------~pti~~~-~~~~~-~~~~~~v~l~iwDTaG~e~~~ 63 (175)
T cd01874 3 KCVVVGDGAVGKTCLLISYT--TNKFPSEY---------------VPTVFDN-YAVTV-MIGGEPYTLGLFDTAGQEDYD 63 (175)
T ss_pred EEEEECCCCCCHHHHHHHHH--HCCCCCCC---------------CCCEEEE-EEEEE-EECCEEEEEEEEECCCCCCCH
T ss_conf 99998999958899999996--49899986---------------7863478-99999-999999999999899974512
Q ss_pred HHHHHHHHHCCEEEEEEECCCCCCHHHHHHH----HHHH---HCCCCEEEEECCCCCCCCCC----------CCHH-HHH
Q ss_conf 9999999730268999986878865589999----9999---70996799832678875321----------1338-887
Q gi|254780321|r 93 YEVSRSLSACEGSLLVVDATQGVEAQTLANV----YQAI---DNNHEIITVLNKADLPSADP----------DRVK-KQI 154 (606)
Q Consensus 93 ~EV~r~l~a~dgaiLvVdA~~Gvq~QT~~~~----~~A~---~~~l~~I~viNKiD~~~A~~----------e~v~-~ei 154 (606)
.-....++-+|++|||-|-++ .+|..++ ..-+ ..+.|+|+|=||+|+...++ ..|. +|-
T Consensus 64 ~l~~~~~~~~~~~ilvydv~d---~~Sf~~i~~~w~~~i~~~~~~~p~iLVGnK~DL~~~~~~~~~~~~~~~r~V~~~eg 140 (175)
T cd01874 64 RLRPLSYPQTDVFLVCFSVVS---PSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETG 140 (175)
T ss_pred HHHHHHHHCCCEEEEEEECCC---HHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHCCCCCCCHHHH
T ss_conf 465887713888899963798---78899999999999998298998899998720335666677764402656689999
Q ss_pred HHHH-HHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q ss_conf 7555-3223210001110022320067877632
Q gi|254780321|r 155 EETI-GISTEDALLVSAKTGEGIPLLLERIVQQ 186 (606)
Q Consensus 155 ~~~~-g~~~~~ii~vSAktG~GV~~LLd~Iv~~ 186 (606)
+.+- .+..-..+-+|||+|.||+++++.++..
T Consensus 141 ~~lA~~~~~~~y~EtSAk~g~nV~e~F~~~i~~ 173 (175)
T cd01874 141 EKLARDLKAVKYVECSALTQKGLKNVFDEAILA 173 (175)
T ss_pred HHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHH
T ss_conf 999997599599991337895979999999998
No 218
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.21 E-value=4.5e-10 Score=87.11 Aligned_cols=151 Identities=31% Similarity=0.366 Sum_probs=90.4
Q ss_pred HCEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHCCEEEEEEEEEEEECCCCCEEEEEEEECCCCC
Q ss_conf 53179998013898778899999982980544443113058677987195052327999974378843899996178730
Q gi|254780321|r 10 RIRNFSIVAHIDHGKSTLADRFIQHCRGLTEREMSSQVLDNMDIERERGITIKAQTVRLNYTSTDAKDYQLNLIDTPGHV 89 (606)
Q Consensus 10 ~IRN~~IiaHvDhGKTTL~d~lL~~tg~i~~~~~~~~vlD~~~~EreRGITIka~~~~~~~~~~~~~~y~iNlIDTPGH~ 89 (606)
.+-.+|++|--.+|||||.-+| ||. .....++. .-|....+-.+.+ .++. .+-+.||+|..
T Consensus 188 ~~p~ValVGYTNAGKSTL~n~L---t~~--~~~~~d~l----------FaTLd~t~r~~~l--~~~~--~~ll~DTVGFI 248 (351)
T TIGR03156 188 GVPTVALVGYTNAGKSTLFNAL---TGA--DVYAADQL----------FATLDPTTRRLDL--PDGG--EVLLTDTVGFI 248 (351)
T ss_pred CCCEEEEECCCCCCHHHHHHHH---HHC--CCCCCCCC----------EEECCCCCCEEEC--CCCC--EEEEEECCCHH
T ss_conf 9976999667887789999998---517--76410343----------1353673204887--9997--69998150056
Q ss_pred H---------HHHHHHHHHHHCCEEEEEEECCCC-CCHHHHHHHHHHHHCC---CCEEEEECCCCCCCCCCCCHHHHHHH
Q ss_conf 0---------279999999730268999986878-8655899999999709---96799832678875321133888775
Q gi|254780321|r 90 D---------FTYEVSRSLSACEGSLLVVDATQG-VEAQTLANVYQAIDNN---HEIITVLNKADLPSADPDRVKKQIEE 156 (606)
Q Consensus 90 D---------F~~EV~r~l~a~dgaiLvVdA~~G-vq~QT~~~~~~A~~~~---l~~I~viNKiD~~~A~~e~v~~ei~~ 156 (606)
. |..-.+. ..-+|-.|.|||+++- .+.|-..+...-.+.| .|+|.|+||||+... +. ...+.
T Consensus 249 ~~LP~~Li~aF~sTLee-~~~aDlllhVvD~S~~~~~~~~~~v~~~L~elg~~~~p~i~V~NKiD~~~~--~~-~~~~~- 323 (351)
T TIGR03156 249 RDLPHELVAAFRATLEE-VREADLLLHVVDASDPDREEQIEAVEEVLEELGAEDIPQLLVYNKIDLLDE--PR-IERLE- 323 (351)
T ss_pred HHCCHHHHHHHHHHHHH-HHHCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEECHHCCCH--HH-HHHHH-
T ss_conf 30886799999999999-985989999805888478999999999999769999988999967015895--77-89987-
Q ss_pred HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q ss_conf 5532232100011100223200678776321
Q gi|254780321|r 157 TIGISTEDALLVSAKTGEGIPLLLERIVQQL 187 (606)
Q Consensus 157 ~~g~~~~~ii~vSAktG~GV~~LLd~Iv~~i 187 (606)
....+.+++||++|.|++.|++.|.+.+
T Consensus 324 ---~~~~~~v~ISA~~g~gi~~L~~~I~~~L 351 (351)
T TIGR03156 324 ---EGYPEAVFVSAKTGEGLDLLLEAIAERL 351 (351)
T ss_pred ---HCCCCEEEEECCCCCCHHHHHHHHHHHC
T ss_conf ---3799879996899989999999999559
No 219
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.21 E-value=2.5e-10 Score=88.79 Aligned_cols=150 Identities=19% Similarity=0.256 Sum_probs=102.5
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHCCEEEEEEEEEEEECCCCCEEEEEEEECCCCCHHHH
Q ss_conf 99980138987788999999829805444431130586779871950523279999743788438999961787300279
Q gi|254780321|r 14 FSIVAHIDHGKSTLADRFIQHCRGLTEREMSSQVLDNMDIERERGITIKAQTVRLNYTSTDAKDYQLNLIDTPGHVDFTY 93 (606)
Q Consensus 14 ~~IiaHvDhGKTTL~d~lL~~tg~i~~~~~~~~vlD~~~~EreRGITIka~~~~~~~~~~~~~~y~iNlIDTPGH~DF~~ 93 (606)
|-++|=-++|||||..+|. .+.... .. .-|+-.+..++.| +++.+++.|++|+..|..
T Consensus 2 IlilGLd~aGKTTil~~l~--~~~~~~-~~--------------~PT~Gf~~~~i~~-----~~~~l~~wDlgGq~~~R~ 59 (164)
T cd04162 2 ILVLGLDGAGKTSLLHSLS--SERSLE-SV--------------VPTTGFNSVAIPT-----QDAIMELLEIGGSQNLRK 59 (164)
T ss_pred EEEECCCCCCHHHHHHHHH--CCCCCC-CC--------------CCCCCCCEEEEEE-----CCEEEEEEECCCHHHHHH
T ss_conf 9999679998999999981--699876-53--------------5632774699998-----999999985375288865
Q ss_pred HHHHHHHHCCEEEEEEECCCCC-CHHHHHHHHHHH--HCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHH-----HH
Q ss_conf 9999997302689999868788-655899999999--709967998326788753211338887755532232-----10
Q gi|254780321|r 94 EVSRSLSACEGSLLVVDATQGV-EAQTLANVYQAI--DNNHEIITVLNKADLPSADPDRVKKQIEETIGISTE-----DA 165 (606)
Q Consensus 94 EV~r~l~a~dgaiLvVdA~~Gv-q~QT~~~~~~A~--~~~l~~I~viNKiD~~~A~~e~v~~ei~~~~g~~~~-----~i 165 (606)
--.+-..-|+|.++|||+++=- ..+.+..++..+ ..++|++++-||.|+|+|. -.+||.+.++++.- -.
T Consensus 60 ~W~~Y~~~~~gIIfVVDssD~~rl~eak~~L~~ll~~~~~~PlLIlaNKqDl~~a~---s~~ei~~~L~L~~i~~~r~w~ 136 (164)
T cd04162 60 YWKRYLSGSQGLIFVVDSADSERLPLARQELHQLLQHPPDLPLVVLANKQDLPAAR---SVQEIHKELELEPIARGRRWI 136 (164)
T ss_pred HHHHHHHCCCEEEEEEECCCHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCC---CHHHHHHHCCCCCCCCCCCEE
T ss_conf 69987117758999995688889999999999997087998699998632433699---999999866994637999889
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHH
Q ss_conf 00111002232006787763210
Q gi|254780321|r 166 LLVSAKTGEGIPLLLERIVQQLP 188 (606)
Q Consensus 166 i~vSAktG~GV~~LLd~Iv~~iP 188 (606)
+.++|.+|.|.+.-++.+.+.+-
T Consensus 137 iq~~s~~g~gl~~~~~~l~~~~~ 159 (164)
T cd04162 137 LQGTSLDDDGSPSRMEAVKDLLS 159 (164)
T ss_pred EEEECCCCCCCHHHHHHHHHHHH
T ss_conf 97110479985899999999999
No 220
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.19 E-value=6.1e-10 Score=86.23 Aligned_cols=143 Identities=31% Similarity=0.343 Sum_probs=96.7
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHCCEEEEEEEEEEEECCCCCEEEEEEEECCCCCHHH
Q ss_conf 79998013898778899999982980544443113058677987195052327999974378843899996178730027
Q gi|254780321|r 13 NFSIVAHIDHGKSTLADRFIQHCRGLTEREMSSQVLDNMDIERERGITIKAQTVRLNYTSTDAKDYQLNLIDTPGHVDFT 92 (606)
Q Consensus 13 N~~IiaHvDhGKTTL~d~lL~~tg~i~~~~~~~~vlD~~~~EreRGITIka~~~~~~~~~~~~~~y~iNlIDTPGH~DF~ 92 (606)
.++|+|-...|||||.-+|+..--+|-... -|-|--.-...+.+ +.+.++|+||.|--+=.
T Consensus 218 ~v~i~G~PN~GKSSL~N~L~~~drAIVS~i--------------pGTTRD~ie~~l~l-----~G~~v~l~DTAGiR~t~ 278 (445)
T PRK05291 218 KVVIAGRPNVGKSSLLNALLGEERAIVTDI--------------AGTTRDVIEEHINL-----DGIPLRLIDTAGIRETE 278 (445)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCEEECCC--------------CCCCCCEEEEEEEE-----CCEEEEEEECCCCCCCC
T ss_conf 699889998768999999857874673189--------------99740402236899-----99899999899766557
Q ss_pred HH-----HHHHHHH---CCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 99-----9999973---026899998687886558999999997099679983267887532113388877555322321
Q gi|254780321|r 93 YE-----VSRSLSA---CEGSLLVVDATQGVEAQTLANVYQAIDNNHEIITVLNKADLPSADPDRVKKQIEETIGISTED 164 (606)
Q Consensus 93 ~E-----V~r~l~a---~dgaiLvVdA~~Gvq~QT~~~~~~A~~~~l~~I~viNKiD~~~A~~e~v~~ei~~~~g~~~~~ 164 (606)
.+ +.|+... +|-.|+|+|++++....-...+. ...+-+.|+|+||+|+..... ...+
T Consensus 279 d~IE~~GI~ra~~~~~~ADlil~v~D~s~~~~~~~~~~~~--~~~~~~~i~V~NK~DL~~~~~-------------~~~~ 343 (445)
T PRK05291 279 DEVEKIGIERSRKAIEEADLVLLVLDASEPLTEEDKEILE--EFKNKPVIVVLNKADLTGEKI-------------DGLP 343 (445)
T ss_pred CHHHHHHHHHHHHHHHHCCEEEEEEECCCCCCCCHHHHHH--HCCCCCEEEEEEHHHCCCCCC-------------CCCC
T ss_conf 4588999999999998399999998799888722599998--517998799985120466534-------------7897
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHC
Q ss_conf 0001110022320067877632100
Q gi|254780321|r 165 ALLVSAKTGEGIPLLLERIVQQLPS 189 (606)
Q Consensus 165 ii~vSAktG~GV~~LLd~Iv~~iP~ 189 (606)
++.+||++|.|++.|++.|.+.+..
T Consensus 344 ~i~iSak~g~Gi~~L~~~i~~~~~~ 368 (445)
T PRK05291 344 VIRISAKTGEGIDELEEALKQLVGF 368 (445)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHC
T ss_conf 5999837886999999999999704
No 221
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.18 E-value=5.9e-10 Score=86.33 Aligned_cols=148 Identities=26% Similarity=0.399 Sum_probs=105.7
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHCCEEEEEEEEEEEECCCCCEEEEEEEECCCCCHHH-
Q ss_conf 9998013898778899999982980544443113058677987195052327999974378843899996178730027-
Q gi|254780321|r 14 FSIVAHIDHGKSTLADRFIQHCRGLTEREMSSQVLDNMDIERERGITIKAQTVRLNYTSTDAKDYQLNLIDTPGHVDFT- 92 (606)
Q Consensus 14 ~~IiaHvDhGKTTL~d~lL~~tg~i~~~~~~~~vlD~~~~EreRGITIka~~~~~~~~~~~~~~y~iNlIDTPGH~DF~- 92 (606)
+|++|.-..|||||-.+| ||+-. ..+|. -|.|+--+...+.|. .+.+.+||.||--+++
T Consensus 6 valvGNPNvGKTtlFN~L---TG~~q--~VgNw----------pGvTVEkkeg~~~~~-----~~~i~ivDLPG~YSL~~ 65 (653)
T COG0370 6 VALVGNPNVGKTTLFNAL---TGANQ--KVGNW----------PGVTVEKKEGKLKYK-----GHEIEIVDLPGTYSLTA 65 (653)
T ss_pred EEEECCCCCCHHHHHHHH---HCCCC--EECCC----------CCCEEEEEEEEEEEC-----CCEEEEEECCCCCCCCC
T ss_conf 898569985489999998---56674--65478----------980699878899735-----85489986897565888
Q ss_pred --H--HHHHH-H--HHCCEEEEEEECCCCCCHHHHHHHHHH---HHCCCCEEEEECCCCCCCCCCCCH---HHHHHHHHH
Q ss_conf --9--99999-9--730268999986878865589999999---970996799832678875321133---888775553
Q gi|254780321|r 93 --Y--EVSRS-L--SACEGSLLVVDATQGVEAQTLANVYQA---IDNNHEIITVLNKADLPSADPDRV---KKQIEETIG 159 (606)
Q Consensus 93 --~--EV~r~-l--~a~dgaiLvVdA~~Gvq~QT~~~~~~A---~~~~l~~I~viNKiD~~~A~~e~v---~~ei~~~~g 159 (606)
. .|.|- | -..|..+-||||+. -+.|+|+. +|.|.|.|+++|++|. |....+ .+.+++.+|
T Consensus 66 ~S~DE~Var~~ll~~~~D~ivnVvDA~n-----LeRnLyltlQLlE~g~p~ilaLNm~D~--A~~~Gi~Id~~~L~~~LG 138 (653)
T COG0370 66 YSEDEKVARDFLLEGKPDLIVNVVDATN-----LERNLYLTLQLLELGIPMILALNMIDE--AKKRGIRIDIEKLSKLLG 138 (653)
T ss_pred CCCHHHHHHHHHHCCCCCEEEEEECCCH-----HHHHHHHHHHHHHCCCCEEEEECCHHH--HHHCCCCCCHHHHHHHHC
T ss_conf 9920899999986389988999602323-----777789999999859985999612756--886497126999999868
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCC
Q ss_conf 22321000111002232006787763210001
Q gi|254780321|r 160 ISTEDALLVSAKTGEGIPLLLERIVQQLPSPT 191 (606)
Q Consensus 160 ~~~~~ii~vSAktG~GV~~LLd~Iv~~iP~P~ 191 (606)
++ ++++||++|.|+++|+++|++..+...
T Consensus 139 vP---Vv~tvA~~g~G~~~l~~~i~~~~~~~~ 167 (653)
T COG0370 139 VP---VVPTVAKRGEGLEELKRAIIELAESKT 167 (653)
T ss_pred CC---EEEEEECCCCCHHHHHHHHHHHCCCCC
T ss_conf 98---899873058897999999987432556
No 222
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.17 E-value=1.8e-09 Score=83.02 Aligned_cols=152 Identities=20% Similarity=0.234 Sum_probs=95.2
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHCCEEEEEEEEEEEECCCCCEEEEEEEECCCCCHHH
Q ss_conf 79998013898778899999982980544443113058677987195052327999974378843899996178730027
Q gi|254780321|r 13 NFSIVAHIDHGKSTLADRFIQHCRGLTEREMSSQVLDNMDIERERGITIKAQTVRLNYTSTDAKDYQLNLIDTPGHVDFT 92 (606)
Q Consensus 13 N~~IiaHvDhGKTTL~d~lL~~tg~i~~~~~~~~vlD~~~~EreRGITIka~~~~~~~~~~~~~~y~iNlIDTPGH~DF~ 92 (606)
.++++|-..-|||+|+-+++ +|.......... -|.....+.+. .+++.+.+.++||+|..+|.
T Consensus 2 KVvllGd~gVGKTSLi~rf~--~~~f~~~~y~~t----------~~~d~~~k~v~-----vd~~~~~l~i~Dt~g~e~~~ 64 (221)
T cd04148 2 RVVMLGSPGVGKSSLASQFT--SGEYDDHAYDAS----------GDDDTYERTVS-----VDGEESTLVVIDHWEQEMWT 64 (221)
T ss_pred EEEEECCCCCHHHHHHHHHH--HCCCCCCCCCCC----------CCEEEEEEEEE-----ECCEEEEEEEEECCCCHHHH
T ss_conf 79999989970999999998--198698667874----------42488999999-----99999899999898731266
Q ss_pred HHHHHHH-HHCCEEEEEEECCCCCCHHHHHHHHHHHH-----CCCCEEEEECCCCCCCCCCCCH-HHHHHH---HHHHHH
Q ss_conf 9999999-73026899998687886558999999997-----0996799832678875321133-888775---553223
Q gi|254780321|r 93 YEVSRSL-SACEGSLLVVDATQGVEAQTLANVYQAID-----NNHEIITVLNKADLPSADPDRV-KKQIEE---TIGIST 162 (606)
Q Consensus 93 ~EV~r~l-~a~dgaiLvVdA~~Gvq~QT~~~~~~A~~-----~~l~~I~viNKiD~~~A~~e~v-~~ei~~---~~g~~~ 162 (606)
.. ..+ ..+|+++||-|-++=--=+-...|+.-+. .++|+|+|=||+|+...+ .| .+|-++ .+++
T Consensus 65 ~~--~~~~~~ada~ilVYdvtdr~SF~~~~~~~~~l~~~~~~~~~piILVGNK~DL~~~R--~Vs~eEg~~~A~~~~~-- 138 (221)
T cd04148 65 ED--SCMQYQGDAFVVVYSVTDRSSFERASELRIQLRRNRQLEDRPIILVGNKSDLARSR--EVSVQEGRACAVVFDC-- 138 (221)
T ss_pred HH--HHHHHCCCEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCHHHHC--CCCHHHHHHHHHHCCC--
T ss_conf 66--56530686899999646677888899999999986489995199985356668638--9999999999998599--
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHH
Q ss_conf 21000111002232006787763210
Q gi|254780321|r 163 EDALLVSAKTGEGIPLLLERIVQQLP 188 (606)
Q Consensus 163 ~~ii~vSAktG~GV~~LLd~Iv~~iP 188 (606)
..+-+||++|.||+++++.++..|-
T Consensus 139 -~F~EtSAk~~~NV~elF~~lvrqIr 163 (221)
T cd04148 139 -KFIETSAGLQHNVDELLEGIVRQIR 163 (221)
T ss_pred -EEEECCCCCCCCHHHHHHHHHHHHH
T ss_conf -8999457999498999999999998
No 223
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=99.17 E-value=1.8e-09 Score=83.07 Aligned_cols=158 Identities=21% Similarity=0.295 Sum_probs=99.3
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHCCEEEEEEEEEEEECCCCCEEEEEEEECCCCCHHHH
Q ss_conf 99980138987788999999829805444431130586779871950523279999743788438999961787300279
Q gi|254780321|r 14 FSIVAHIDHGKSTLADRFIQHCRGLTEREMSSQVLDNMDIERERGITIKAQTVRLNYTSTDAKDYQLNLIDTPGHVDFTY 93 (606)
Q Consensus 14 ~~IiaHvDhGKTTL~d~lL~~tg~i~~~~~~~~vlD~~~~EreRGITIka~~~~~~~~~~~~~~y~iNlIDTPGH~DF~~ 93 (606)
+.++|-.+-|||+|+-|++ .+.+.+.-. .++ |+-..++.+.+ .+..++.++|.||+|+..|..
T Consensus 3 vvllGd~~VGKTSli~rf~--~~~F~~~y~-~Ti----------G~d~~~k~i~i----~~~~~v~l~iwDtaGqe~~~~ 65 (215)
T cd04109 3 IVVLGDGAVGKTSLCRRFA--KEGFGKSYK-QTI----------GLDFFSKRVTL----PGNLNVTLQVWDIGGQSIGGK 65 (215)
T ss_pred EEEECCCCCCHHHHHHHHH--HCCCCCCCC-CCC----------CEEEEEEEEEE----CCCCEEEEEEEECCCCCCHHH
T ss_conf 9999999970999999997--498988778-865----------57889999998----799469999996998500237
Q ss_pred HHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHH----HC-CC--CEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 9999997302689999868788655899999999----70-99--67998326788753211338887755532232100
Q gi|254780321|r 94 EVSRSLSACEGSLLVVDATQGVEAQTLANVYQAI----DN-NH--EIITVLNKADLPSADPDRVKKQIEETIGISTEDAL 166 (606)
Q Consensus 94 EV~r~l~a~dgaiLvVdA~~Gvq~QT~~~~~~A~----~~-~l--~~I~viNKiD~~~A~~e~v~~ei~~~~g~~~~~ii 166 (606)
-....++-++|+|||-|-+.=--=+-...|+... .. .- ++++|=||+|++..+.= -.+|-+++-.-..-..+
T Consensus 66 ~~~~y~~~a~~~ilVYDitn~~SF~~l~~W~~~i~~~~~~~~~~~~iiLVGNK~DL~~~R~V-s~ee~~~~A~~~g~~f~ 144 (215)
T cd04109 66 MLDKYIYGAHAVFLVYDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNRTV-KDDKHARFAQANGMESC 144 (215)
T ss_pred HHHHHHHHHCCEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCHHHHCCC-CHHHHHHHHHHCCCEEE
T ss_conf 89999975151377414786789998999999999985045778529999754542864776-99999999998299899
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHC
Q ss_conf 01110022320067877632100
Q gi|254780321|r 167 LVSAKTGEGIPLLLERIVQQLPS 189 (606)
Q Consensus 167 ~vSAktG~GV~~LLd~Iv~~iP~ 189 (606)
.+|||+|.||++++..++..+..
T Consensus 145 E~SAktg~nV~e~F~~la~~i~~ 167 (215)
T cd04109 145 LVSAKTGDRVNLLFQQLAAELLG 167 (215)
T ss_pred EEECCCCCCHHHHHHHHHHHHHC
T ss_conf 98389994989999999999976
No 224
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=99.16 E-value=2.1e-09 Score=82.60 Aligned_cols=158 Identities=18% Similarity=0.205 Sum_probs=100.1
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHCCEEEEEEEEEEEECCCCCEEEEEEEECCCCCHHH
Q ss_conf 79998013898778899999982980544443113058677987195052327999974378843899996178730027
Q gi|254780321|r 13 NFSIVAHIDHGKSTLADRFIQHCRGLTEREMSSQVLDNMDIERERGITIKAQTVRLNYTSTDAKDYQLNLIDTPGHVDFT 92 (606)
Q Consensus 13 N~~IiaHvDhGKTTL~d~lL~~tg~i~~~~~~~~vlD~~~~EreRGITIka~~~~~~~~~~~~~~y~iNlIDTPGH~DF~ 92 (606)
.+.++|..+-|||+|.-|++ .|.+.+.. .. ||.. ..+... ..+++.+.++|.||.|+..|.
T Consensus 5 KivlvGd~~VGKTsli~r~~--~~~F~~~y-~p--------------ti~~-~~~~~~-~i~~~~v~l~iwDtaG~e~~~ 65 (191)
T cd01875 5 KCVVVGDGAVGKTCLLICYT--TNAFPKEY-IP--------------TVFD-NYSAQT-AVDGRTVSLNLWDTAGQEEYD 65 (191)
T ss_pred EEEEECCCCCCHHHHHHHHH--HCCCCCCC-CC--------------CCCE-EEEEEE-EECCEEEEEEEEECCCCCCHH
T ss_conf 99999999989999999997--29999864-66--------------2100-046789-999999999998588870035
Q ss_pred HHHHHHHHHCCEEEEEEECCCCCCHHHHH-HHHHHHH---CCCCEEEEECCCCCCCCCCCCHHHHHHH----------HH
Q ss_conf 99999997302689999868788655899-9999997---0996799832678875321133888775----------55
Q gi|254780321|r 93 YEVSRSLSACEGSLLVVDATQGVEAQTLA-NVYQAID---NNHEIITVLNKADLPSADPDRVKKQIEE----------TI 158 (606)
Q Consensus 93 ~EV~r~l~a~dgaiLvVdA~~Gvq~QT~~-~~~~A~~---~~l~~I~viNKiD~~~A~~e~v~~ei~~----------~~ 158 (606)
.-.....+.+|++|||.|-+.=---+... .|+.-+. .++|+|+|-||+|+.+.+ + ...++.+ ..
T Consensus 66 ~~~~~~~~~a~~~ilvfdvt~~~Sf~~v~~~w~~ei~~~~~~~piiLvGnK~DL~~~~-~-~~~~~~e~~~~~vs~eeg~ 143 (191)
T cd01875 66 RLRTLSYPQTNVFIICFSIASPSSYENVRHKWHPEVCHHCPNVPILLVGTKKDLRNDA-D-TLKKLKEQGQAPITPQQGG 143 (191)
T ss_pred HHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCH-H-HHHHHHHHHCCCCCHHHHH
T ss_conf 6778774478689999857977889999999999999709699789998880102345-7-7888776413755699999
Q ss_pred HH----HHHHHHHHHHHCCCCCCHHHHHHHHHHHCCC
Q ss_conf 32----2321000111002232006787763210001
Q gi|254780321|r 159 GI----STEDALLVSAKTGEGIPLLLERIVQQLPSPT 191 (606)
Q Consensus 159 g~----~~~~ii~vSAktG~GV~~LLd~Iv~~iP~P~ 191 (606)
.+ ..-..+.+||++|.||+++++.+++.+=.|.
T Consensus 144 ~~a~~~~~~~y~EtSAkt~~nV~e~F~~l~k~il~~~ 180 (191)
T cd01875 144 ALAKQIHAVKYLECSALNQDGVKEVFAEAVRAVLNPT 180 (191)
T ss_pred HHHHHHCCCEEEECCCCCCCCHHHHHHHHHHHHHCCC
T ss_conf 9999809988999068989698999999999980789
No 225
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.16 E-value=1.1e-09 Score=84.44 Aligned_cols=145 Identities=19% Similarity=0.206 Sum_probs=94.9
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHCCEEEEEEEEEEEECCCCCEEEEEEEECCCCCHHHH
Q ss_conf 99980138987788999999829805444431130586779871950523279999743788438999961787300279
Q gi|254780321|r 14 FSIVAHIDHGKSTLADRFIQHCRGLTEREMSSQVLDNMDIERERGITIKAQTVRLNYTSTDAKDYQLNLIDTPGHVDFTY 93 (606)
Q Consensus 14 ~~IiaHvDhGKTTL~d~lL~~tg~i~~~~~~~~vlD~~~~EreRGITIka~~~~~~~~~~~~~~y~iNlIDTPGH~DF~~ 93 (606)
+-|+|=-++|||||.-+|. .+.... . -=|+-....++.| +++.+++.|..|+.-|-.
T Consensus 2 ililGLd~aGKTTil~~l~--~~~~~~--~--------------~PT~G~~~~~~~~-----~~~~l~~~DlgG~~~~R~ 58 (167)
T cd04161 2 LLTVGLDNAGKTTLVSALQ--GEIPKK--V--------------APTVGFTPTKLRL-----DKYEVCIFDLGGGANFRG 58 (167)
T ss_pred EEEEEECCCCHHHHHHHHC--CCCCCC--C--------------CCCCCCCEEEEEE-----CCEEEEEEECCCCHHHHH
T ss_conf 8999008998899999982--899876--5--------------0877731799998-----999999998998778889
Q ss_pred HHHHHHHHCCEEEEEEECCCCC-CHHHHHHHHHHHH----CCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHH------
Q ss_conf 9999997302689999868788-6558999999997----0996799832678875321133888775553223------
Q gi|254780321|r 94 EVSRSLSACEGSLLVVDATQGV-EAQTLANVYQAID----NNHEIITVLNKADLPSADPDRVKKQIEETIGIST------ 162 (606)
Q Consensus 94 EV~r~l~a~dgaiLvVdA~~Gv-q~QT~~~~~~A~~----~~l~~I~viNKiD~~~A~~e~v~~ei~~~~g~~~------ 162 (606)
-=.+-..-++|.|.|||+++-- ..+.+..++..+. .+.|++++.||.|+|+|-.. +||.+.++++.
T Consensus 59 lW~~Y~~~~~gIIfVVDssD~~rl~eak~~L~~lL~~~~l~~~PiLIlaNKqDl~~a~~~---~ei~~~L~L~~l~~~~~ 135 (167)
T cd04161 59 IWVNYYAEAHGLVFVVDSSDDDRVQEVKEILRELLQHPRVSGKPILVLANKQDKKNALLG---ADVIEYLSLEKLVNENK 135 (167)
T ss_pred HHHHHCCCCCEEEEEEECCCHHHHHHHHHHHHHHHCCHHHCCCEEEEEEECCCCCCCCCH---HHHHHHHCCHHHCCCCC
T ss_conf 999873477657999855758899999999999965887789959999886576158999---99998819742408998
Q ss_pred --HHHHHHHHHCCCC------CCHHHHHHH
Q ss_conf --2100011100223------200678776
Q gi|254780321|r 163 --EDALLVSAKTGEG------IPLLLERIV 184 (606)
Q Consensus 163 --~~ii~vSAktG~G------V~~LLd~Iv 184 (606)
-.+.+|||++|.| +.+=|+=++
T Consensus 136 ~~~~I~~csA~tG~G~~~~~~l~eGl~WL~ 165 (167)
T cd04161 136 SLCHIEPCSAIEGLGKKIDPSIVEGLRWLL 165 (167)
T ss_pred CEEEEEECEEECCCCCCCCCCHHHHHHHHH
T ss_conf 637999576444888787663154998986
No 226
>PRK11058 putative GTPase HflX; Provisional
Probab=99.15 E-value=3e-09 Score=81.55 Aligned_cols=156 Identities=25% Similarity=0.331 Sum_probs=93.0
Q ss_pred HCEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHCCEEEEEEEEEEEECCCCCEEEEEEEECCCCC
Q ss_conf 53179998013898778899999982980544443113058677987195052327999974378843899996178730
Q gi|254780321|r 10 RIRNFSIVAHIDHGKSTLADRFIQHCRGLTEREMSSQVLDNMDIERERGITIKAQTVRLNYTSTDAKDYQLNLIDTPGHV 89 (606)
Q Consensus 10 ~IRN~~IiaHvDhGKTTL~d~lL~~tg~i~~~~~~~~vlD~~~~EreRGITIka~~~~~~~~~~~~~~y~iNlIDTPGH~ 89 (606)
.+-.+|++|--.+|||||.-+|-. ++... .+++--+++- .+-.+. -.++.. +-|.||.|..
T Consensus 196 ~~~~ValVGYTNAGKSTL~n~Lt~-~~v~~----~d~LFATLD~----------t~R~~~--l~~~~~--~lltDTVGFI 256 (426)
T PRK11058 196 DVPTVSLVGYTNAGKSTLFNRITE-ARVYA----ADQLFATLDP----------TLRRID--VADVGE--TVLADTVGFI 256 (426)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHC-CCCCC----CCCCCCCCCC----------CEEEEE--CCCCCE--EEEECCCHHH
T ss_conf 997699973577778999877752-88763----2545014786----------202678--699986--9997150666
Q ss_pred H---------HHHHHHHHHHHCCEEEEEEECCCC-CCHHHHHHHHHHHHC---CCCEEEEECCCCCCCCCCCCHHHHHHH
Q ss_conf 0---------279999999730268999986878-865589999999970---996799832678875321133888775
Q gi|254780321|r 90 D---------FTYEVSRSLSACEGSLLVVDATQG-VEAQTLANVYQAIDN---NHEIITVLNKADLPSADPDRVKKQIEE 156 (606)
Q Consensus 90 D---------F~~EV~r~l~a~dgaiLvVdA~~G-vq~QT~~~~~~A~~~---~l~~I~viNKiD~~~A~~e~v~~ei~~ 156 (606)
+ |..--+. ..-+|--|.|||+++- .+.|-..+...-.+. +.|.|.|.||||+...... .+..
T Consensus 257 ~~LP~~LveAF~sTLeE-v~~ADlLLhVvD~S~p~~~~q~~~v~~vL~elg~~~~p~i~V~NKiD~~~~~~~----~~~~ 331 (426)
T PRK11058 257 RHLPHDLVAAFKATLQE-TRQATLLLHVIDAADVRVQENIEAVNTVLEEIDAHEIPTLLVMNKIDMLDDFEP----RIDR 331 (426)
T ss_pred HHCCHHHHHHHHHHHHH-HHCCCEEEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCHHH----HHHH
T ss_conf 51989999999999999-963988999984999379999999999999759999977999977023896445----5666
Q ss_pred HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCC
Q ss_conf 5532232100011100223200678776321000
Q gi|254780321|r 157 TIGISTEDALLVSAKTGEGIPLLLERIVQQLPSP 190 (606)
Q Consensus 157 ~~g~~~~~ii~vSAktG~GV~~LLd~Iv~~iP~P 190 (606)
. .....+.+++||++|.|++.|+++|.+.++.-
T Consensus 332 ~-~~~~p~~V~iSA~tg~Gi~~L~~~I~~~L~~~ 364 (426)
T PRK11058 332 D-EENKPIRVWLSAQTGAGIPLLFQALTERLSGE 364 (426)
T ss_pred H-HCCCCCEEEEECCCCCCHHHHHHHHHHHCCCC
T ss_conf 5-33998779997899989999999999870337
No 227
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=99.13 E-value=1.7e-09 Score=83.31 Aligned_cols=158 Identities=18% Similarity=0.271 Sum_probs=102.4
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHCCEEEEEEEEEEEECCCCCEEEEEEEECCCCCHHHH
Q ss_conf 99980138987788999999829805444431130586779871950523279999743788438999961787300279
Q gi|254780321|r 14 FSIVAHIDHGKSTLADRFIQHCRGLTEREMSSQVLDNMDIERERGITIKAQTVRLNYTSTDAKDYQLNLIDTPGHVDFTY 93 (606)
Q Consensus 14 ~~IiaHvDhGKTTL~d~lL~~tg~i~~~~~~~~vlD~~~~EreRGITIka~~~~~~~~~~~~~~y~iNlIDTPGH~DF~~ 93 (606)
+.++|..+-|||+|+-|++ .+.+.+.- ..++ | + ...+.+. .+++.++++|.||.|...|..
T Consensus 3 IvvlGdsgVGKTSLi~Rf~--~~~F~~~y-~pTi------~-d----~~~k~i~-----i~g~~v~L~IwDTaGqe~f~s 63 (247)
T cd04143 3 MVVLGASKVGKTAIVSRFL--GGRFEEQY-TPTI------E-D----FHRKLYS-----IRGEVYQLDILDTSGNHPFPA 63 (247)
T ss_pred EEEECCCCCCHHHHHHHHH--CCCCCCCC-CCCH------H-H----EEEEEEE-----ECCEEEEEEEEECCCCCCCCC
T ss_conf 9999989978999999996--49689987-8883------5-3----1889999-----999999999996766536874
Q ss_pred HHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHH-------------HCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 9999997302689999868788655899999999-------------709967998326788753211338887755532
Q gi|254780321|r 94 EVSRSLSACEGSLLVVDATQGVEAQTLANVYQAI-------------DNNHEIITVLNKADLPSADPDRVKKQIEETIGI 160 (606)
Q Consensus 94 EV~r~l~a~dgaiLvVdA~~Gvq~QT~~~~~~A~-------------~~~l~~I~viNKiD~~~A~~e~v~~ei~~~~g~ 160 (606)
-.....+-+|++|||-|-+.---=+.+..|+.-+ ..++|+|+|=||.|+...+ +-..+|..+++.-
T Consensus 64 l~~~y~~~a~~~IlVYDITnr~SFe~v~~w~~~I~e~k~~~~~~~~~~~~vpiiLVGNK~DL~~~R-~Vs~eEa~~~~A~ 142 (247)
T cd04143 64 MRRLSILTGDVFILVFSLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPR-EVQRDEVEQLVGG 142 (247)
T ss_pred CHHHHHHCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCHHCC-CCCHHHHHHHHHH
T ss_conf 420131217789999979987899989999999998640010013578887589986655432017-8799999999997
Q ss_pred -HHHHHHHHHHHCCCCCCHHHHHHHHHHHCCC
Q ss_conf -2321000111002232006787763210001
Q gi|254780321|r 161 -STEDALLVSAKTGEGIPLLLERIVQQLPSPT 191 (606)
Q Consensus 161 -~~~~ii~vSAktG~GV~~LLd~Iv~~iP~P~ 191 (606)
..-..+-+|||+|.||++++.++....--|.
T Consensus 143 ~~~~~f~EtSAKt~~NV~E~F~~L~~~~~l~~ 174 (247)
T cd04143 143 DENCAYFEVSAKKNSNLDEMFRALFSLAKLPN 174 (247)
T ss_pred HCCCEEEECCCCCCCCHHHHHHHHHHHCCCCC
T ss_conf 68987998878999498999999998549986
No 228
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.12 E-value=9.3e-10 Score=84.98 Aligned_cols=152 Identities=28% Similarity=0.363 Sum_probs=101.1
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHCCEEEEEEEEEEEECCCCCEEEEEEEECCCCC---
Q ss_conf 79998013898778899999982980544443113058677987195052327999974378843899996178730---
Q gi|254780321|r 13 NFSIVAHIDHGKSTLADRFIQHCRGLTEREMSSQVLDNMDIERERGITIKAQTVRLNYTSTDAKDYQLNLIDTPGHV--- 89 (606)
Q Consensus 13 N~~IiaHvDhGKTTL~d~lL~~tg~i~~~~~~~~vlD~~~~EreRGITIka~~~~~~~~~~~~~~y~iNlIDTPGH~--- 89 (606)
+++|+|-...|||||.-+|+..-.+|-..-. |-|= -.+.-.+ +-+.|.++|+||-|--
T Consensus 219 kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~--------------GTTR--Dviee~i---~i~G~pv~l~DTAGiRet~ 279 (454)
T COG0486 219 KVVIIGRPNVGKSSLLNALLGRDRAIVTDIA--------------GTTR--DVIEEDI---NLNGIPVRLVDTAGIRETD 279 (454)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCEEECCCC--------------CCCC--CEEEEEE---EECCEEEEEEECCCCCCCC
T ss_conf 4999879988679999988667866742899--------------9741--0378999---9898899998567766673
Q ss_pred HHH--HHHHHHHH---HCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 027--99999997---3026899998687886558999999997099679983267887532113388877555322321
Q gi|254780321|r 90 DFT--YEVSRSLS---ACEGSLLVVDATQGVEAQTLANVYQAIDNNHEIITVLNKADLPSADPDRVKKQIEETIGISTED 164 (606)
Q Consensus 90 DF~--~EV~r~l~---a~dgaiLvVdA~~Gvq~QT~~~~~~A~~~~l~~I~viNKiD~~~A~~e~v~~ei~~~~g~~~~~ 164 (606)
|+. --|+||.. -+|.+|+|+||+++...+-...+. ....+.++++|+||.|+......... .. .+...
T Consensus 280 d~VE~iGIeRs~~~i~~ADlvL~v~D~~~~~~~~d~~~~~-~~~~~~~~i~v~NK~DL~~~~~~~~~----~~--~~~~~ 352 (454)
T COG0486 280 DVVERIGIERAKKAIEEADLVLFVLDASQPLDKEDLALIE-LLPKKKPIIVVLNKADLVSKIELESE----KL--ANGDA 352 (454)
T ss_pred CHHHHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHH-HCCCCCCEEEEEECHHCCCCCCCCHH----HC--CCCCC
T ss_conf 4899999999999998599899997088777601177887-24368977999960211564321012----02--67882
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHCC
Q ss_conf 00011100223200678776321000
Q gi|254780321|r 165 ALLVSAKTGEGIPLLLERIVQQLPSP 190 (606)
Q Consensus 165 ii~vSAktG~GV~~LLd~Iv~~iP~P 190 (606)
++.+||++|.|++.|.++|-..+..-
T Consensus 353 ~i~iSa~t~~Gl~~L~~~i~~~~~~~ 378 (454)
T COG0486 353 IISISAKTGEGLDALREAIKQLFGKG 378 (454)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHC
T ss_conf 69998257657999999999998630
No 229
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.10 E-value=2.3e-09 Score=82.33 Aligned_cols=154 Identities=25% Similarity=0.266 Sum_probs=97.6
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHCCEEEEE-EEEEEEECCCCCEEEEEEEECCCCCH
Q ss_conf 17999801389877889999998298054444311305867798719505232-79999743788438999961787300
Q gi|254780321|r 12 RNFSIVAHIDHGKSTLADRFIQHCRGLTEREMSSQVLDNMDIERERGITIKAQ-TVRLNYTSTDAKDYQLNLIDTPGHVD 90 (606)
Q Consensus 12 RN~~IiaHvDhGKTTL~d~lL~~tg~i~~~~~~~~vlD~~~~EreRGITIka~-~~~~~~~~~~~~~y~iNlIDTPGH~D 90 (606)
+-+.++|-..-|||+|.-|+. .|.+...- . -||-.. ...+ ..+++.+.+++.||+|+.+
T Consensus 2 ~KivllGd~~VGKTsLi~r~~--~~~f~~~y-~--------------pTi~~~~~~~i---~v~~~~v~l~iwDTaG~e~ 61 (187)
T cd04129 2 RKLVIVGDGACGKTSLLSVFT--LGEFPEEY-H--------------PTVFENYVTDC---RVDGKPVQLALWDTAGQEE 61 (187)
T ss_pred EEEEEECCCCCCHHHHHHHHH--HCCCCCCC-C--------------CCEEEEEEEEE---EECCEEEEEEEEECCCCCC
T ss_conf 199999989976899999998--29899987-8--------------86678989999---9999999999997888703
Q ss_pred HHHHHHHHHHHCCEEEEEEECCCCCCHHHHHH----HHH-HHH--CCCCEEEEECCCCCCCCCC-------CC-HH-H--
Q ss_conf 27999999973026899998687886558999----999-997--0996799832678875321-------13-38-8--
Q gi|254780321|r 91 FTYEVSRSLSACEGSLLVVDATQGVEAQTLAN----VYQ-AID--NNHEIITVLNKADLPSADP-------DR-VK-K-- 152 (606)
Q Consensus 91 F~~EV~r~l~a~dgaiLvVdA~~Gvq~QT~~~----~~~-A~~--~~l~~I~viNKiD~~~A~~-------e~-v~-~-- 152 (606)
|..-.....+-++++||+-|-+. .+|..+ |.. +.. .+.|+|+|-||+|+..... ++ |. +
T Consensus 62 ~~~~~~~~~~~a~~~ilvydi~~---~~Sf~~~~~~w~~~~~~~~~~~piilVGnK~DL~~~~~~~~~~~~~r~V~~~~g 138 (187)
T cd04129 62 YERLRPLSYSKAHVILIGFAVDT---PDSLENVRTKWIEEVRRYCPNVPVILVGLKKDLRQDAVAKEEYRTQRFVPIQQG 138 (187)
T ss_pred CCCCCCCEECCCCEEEEECCCCC---HHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCHHHCCCCCHHHH
T ss_conf 45460412338858999702698---667999999999999985879988999886001134112111223155789999
Q ss_pred -HHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCC
Q ss_conf -87755532232100011100223200678776321000
Q gi|254780321|r 153 -QIEETIGISTEDALLVSAKTGEGIPLLLERIVQQLPSP 190 (606)
Q Consensus 153 -ei~~~~g~~~~~ii~vSAktG~GV~~LLd~Iv~~iP~P 190 (606)
++.+.++ ....+-+||++|.||+++++.++..+=..
T Consensus 139 ~~~a~~~~--~~~y~EtSAk~~~nV~e~F~~~~r~~l~~ 175 (187)
T cd04129 139 KRVAKEIG--AKKYMECSALTGEGVDDVFEAATRAALLV 175 (187)
T ss_pred HHHHHHCC--CCEEEEECCCCCCCHHHHHHHHHHHHHHH
T ss_conf 99999849--97899968899979899999999999752
No 230
>PRK12299 obgE GTPase ObgE; Reviewed
Probab=99.06 E-value=1.2e-08 Score=77.55 Aligned_cols=161 Identities=24% Similarity=0.284 Sum_probs=95.6
Q ss_pred HHHCEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHCCEEEEEEEEEEEECCCCCEEEEEEEECCC
Q ss_conf 52531799980138987788999999829805444431130586779871950523279999743788438999961787
Q gi|254780321|r 8 LSRIRNFSIVAHIDHGKSTLADRFIQHCRGLTEREMSSQVLDNMDIERERGITIKAQTVRLNYTSTDAKDYQLNLIDTPG 87 (606)
Q Consensus 8 ~~~IRN~~IiaHvDhGKTTL~d~lL~~tg~i~~~~~~~~vlD~~~~EreRGITIka~~~~~~~~~~~~~~y~iNlIDTPG 87 (606)
++-|-.+++||--.+|||||.-++ |++-.+- . ||- -.|+.-+.=.+.| .+++ .+-+.|+||
T Consensus 155 LkliADVgLVG~PNaGKSTLl~~i---s~A~pkI--a----~Yp------FTTl~P~lGvv~~--~d~~--~~~iaDiPG 215 (334)
T PRK12299 155 LKLLADVGLVGLPNAGKSTLISSV---SAAKPKI--A----DYP------FTTLHPNLGVVRV--DDYK--SFVIADIPG 215 (334)
T ss_pred EEEECCCEEEECCCCCHHHHHHHH---HCCCCCC--C----CCC------CEECCCEEEEEEE--CCCC--EEEEEECCC
T ss_conf 984403014636987466999987---6476433--5----787------3003875479994--6886--789986674
Q ss_pred CC-----H--HHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHH------HCCCCEEEEECCCCCCCCCCCCHHHHH
Q ss_conf 30-----0--2799999997302689999868788655899999999------709967998326788753211338887
Q gi|254780321|r 88 HV-----D--FTYEVSRSLSACEGSLLVVDATQGVEAQTLANVYQAI------DNNHEIITVLNKADLPSADPDRVKKQI 154 (606)
Q Consensus 88 H~-----D--F~~EV~r~l~a~dgaiLvVdA~~Gvq~QT~~~~~~A~------~~~l~~I~viNKiD~~~A~~e~v~~ei 154 (606)
-. . -+.+.-|-+.=|...+.|||++..=-.+....+..-+ ...-|.++|+||||++.+ +...+.+
T Consensus 216 lIegA~~g~GLG~~FLrHieR~~~L~~viD~s~~d~~~~~~~l~~EL~~y~~~L~~Kp~ivvlNK~Dl~~~--~~~~~~~ 293 (334)
T PRK12299 216 LIEGASEGAGLGHRFLKHIERTRLLLHLVDASSEDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLDE--EERKEKI 293 (334)
T ss_pred CCCCCCCCCCCHHHHHHHHHHCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCH--HHHHHHH
T ss_conf 33552347774789987665343699999799889899999999999985065536987999988106885--6789999
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHC
Q ss_conf 75553223210001110022320067877632100
Q gi|254780321|r 155 EETIGISTEDALLVSAKTGEGIPLLLERIVQQLPS 189 (606)
Q Consensus 155 ~~~~g~~~~~ii~vSAktG~GV~~LLd~Iv~~iP~ 189 (606)
+++...-..+++++||.+|.|+++|++.|.+.+-.
T Consensus 294 ~~~~~~~~~~v~~ISA~~g~Gl~eL~~~i~~~L~~ 328 (334)
T PRK12299 294 KELIKALGGPVFLISAVTGEGLDELLRALWEFLKE 328 (334)
T ss_pred HHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 99998709968999787784999999999999997
No 231
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.06 E-value=1.4e-08 Score=77.15 Aligned_cols=154 Identities=19% Similarity=0.199 Sum_probs=94.7
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHCCEEEEE-EEEEEEECCCCCEEEEEEEECCCCCHH
Q ss_conf 7999801389877889999998298054444311305867798719505232-799997437884389999617873002
Q gi|254780321|r 13 NFSIVAHIDHGKSTLADRFIQHCRGLTEREMSSQVLDNMDIERERGITIKAQ-TVRLNYTSTDAKDYQLNLIDTPGHVDF 91 (606)
Q Consensus 13 N~~IiaHvDhGKTTL~d~lL~~tg~i~~~~~~~~vlD~~~~EreRGITIka~-~~~~~~~~~~~~~y~iNlIDTPGH~DF 91 (606)
-+.++|...-|||+|.-|+. .+.+.+.. . -||-.. +..+. .+++.+.++|.||+|..+|
T Consensus 3 KivlvGd~~VGKTsLi~r~~--~~~F~~~y-~--------------pTi~~~~~~~~~---v~~~~v~l~iwDTaGqe~~ 62 (178)
T cd04131 3 KIVVVGDVQCGKTALLQVFA--KDCYPETY-V--------------PTVFENYTASFE---IDEQRIELSLWDTSGSPYY 62 (178)
T ss_pred EEEEECCCCCCHHHHHHHHH--CCCCCCCC-C--------------CCEEEEEEEEEE---ECCEEEEEEEEECCCCHHH
T ss_conf 99999999977899999996--39999985-7--------------856888899999---9999999999968987421
Q ss_pred HHHHHHHHHHCCEEEEEEECCCCCCHHHH-HHHHHHHH---CCCCEEEEECCCCCCCCCC--------CC--HH-HHHHH
Q ss_conf 79999999730268999986878865589-99999997---0996799832678875321--------13--38-88775
Q gi|254780321|r 92 TYEVSRSLSACEGSLLVVDATQGVEAQTL-ANVYQAID---NNHEIITVLNKADLPSADP--------DR--VK-KQIEE 156 (606)
Q Consensus 92 ~~EV~r~l~a~dgaiLvVdA~~Gvq~QT~-~~~~~A~~---~~l~~I~viNKiD~~~A~~--------e~--v~-~ei~~ 156 (606)
..-.....+-+|++||+-|-+.---=+.. ..|..-.. -+.++|+|=||+|+..-.. .. |. +|-+.
T Consensus 63 ~~l~~~~y~~a~~~ilvydit~~~Sf~~v~~~W~~ei~~~~~~~~iiLVGnK~DLr~~~~~~~~~~~~~~~~Vs~eeg~~ 142 (178)
T cd04131 63 DNVRPLCYPDSDAVLICFDISRPETLDSVLKKWRGEIQEFCPNTKVLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQGCA 142 (178)
T ss_pred CCHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHCCCCCCCHHHHHH
T ss_conf 10366773468789999737987889999999999999868799889999854366444556677644677768999999
Q ss_pred HH-HHHHHHHHHHHHHCCC-CCCHHHHHHHHH
Q ss_conf 55-3223210001110022-320067877632
Q gi|254780321|r 157 TI-GISTEDALLVSAKTGE-GIPLLLERIVQQ 186 (606)
Q Consensus 157 ~~-g~~~~~ii~vSAktG~-GV~~LLd~Iv~~ 186 (606)
+. .+.+...+-|||+||. ||+++++.+...
T Consensus 143 ~A~~~ga~~y~EtSAktg~ngV~evF~~a~~~ 174 (178)
T cd04131 143 IAKQLGAEIYLECSAFTSEKSVRDIFHVATMA 174 (178)
T ss_pred HHHHCCCCEEEECCCCCCCCCHHHHHHHHHHH
T ss_conf 99974998999978486873989999999999
No 232
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.04 E-value=1.2e-08 Score=77.64 Aligned_cols=127 Identities=22% Similarity=0.412 Sum_probs=77.3
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHCCEEEEEEEEEEEECCCCCEEEEEEEECCCCCHHH
Q ss_conf 79998013898778899999982980544443113058677987195052327999974378843899996178730027
Q gi|254780321|r 13 NFSIVAHIDHGKSTLADRFIQHCRGLTEREMSSQVLDNMDIERERGITIKAQTVRLNYTSTDAKDYQLNLIDTPGHVDFT 92 (606)
Q Consensus 13 N~~IiaHvDhGKTTL~d~lL~~tg~i~~~~~~~~vlD~~~~EreRGITIka~~~~~~~~~~~~~~y~iNlIDTPGH~DF~ 92 (606)
.|-|+|--++|||||.-+|. .|.... ++ - ||+.+.... ......+...++++|+|||.-+.
T Consensus 2 tvLl~Gl~~aGKT~Lf~~L~--~~~~~~-----T~-t----------S~~~n~~~~-~~~~~~~~~~~~lvD~PGH~klR 62 (203)
T cd04105 2 TVLLLGPSDSGKTALFTKLT--TGKYRS-----TV-T----------SIEPNVATF-ILNSEGKGKKFRLVDVPGHPKLR 62 (203)
T ss_pred EEEEECCCCCCHHHHHHHHH--CCCCCC-----CC-C----------CCCCCCEEE-ECCCCCCCCEEEEEECCCCHHHH
T ss_conf 59999079998999999997--499888-----77-8----------887862066-40246687279999879968899
Q ss_pred HHHHHHHH-HCCEEEEEEECCCCCC--HHHHHHHHHHH---H---CCCCEEEEECCCCCCCCCCCCH-HHHHHHHH
Q ss_conf 99999997-3026899998687886--55899999999---7---0996799832678875321133-88877555
Q gi|254780321|r 93 YEVSRSLS-ACEGSLLVVDATQGVE--AQTLANVYQAI---D---NNHEIITVLNKADLPSADPDRV-KKQIEETI 158 (606)
Q Consensus 93 ~EV~r~l~-a~dgaiLvVdA~~Gvq--~QT~~~~~~A~---~---~~l~~I~viNKiD~~~A~~e~v-~~ei~~~~ 158 (606)
....+.+. .+.|.|.||||++=.+ ..+-+.+|-.+ + .++|++++.||.|++.|.+... +.++|.-+
T Consensus 63 ~~~~~~~~~~~~gIVfvVDs~~~~~~l~~~Ae~Ly~iL~~~~~~~~~iPvLIacNKqDl~tA~~~~~Ik~~LE~Ei 138 (203)
T cd04105 63 DKLLETLKNSAKGIVFVVDSATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFTAKPAKKIKEQLEKEL 138 (203)
T ss_pred HHHHHHHHHCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHH
T ss_conf 9999998754989999996887511199999999999862664368998899986614345789999999999999
No 233
>pfam01926 MMR_HSR1 GTPase of unknown function.
Probab=99.04 E-value=3.5e-09 Score=81.11 Aligned_cols=98 Identities=28% Similarity=0.365 Sum_probs=70.6
Q ss_pred CHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHCCEEEEEEEEEEEECCCCCEEEEEEEECCCCCH--------HHHH
Q ss_conf 87788999999829805444431130586779871950523279999743788438999961787300--------2799
Q gi|254780321|r 23 GKSTLADRFIQHCRGLTEREMSSQVLDNMDIERERGITIKAQTVRLNYTSTDAKDYQLNLIDTPGHVD--------FTYE 94 (606)
Q Consensus 23 GKTTL~d~lL~~tg~i~~~~~~~~vlD~~~~EreRGITIka~~~~~~~~~~~~~~y~iNlIDTPGH~D--------F~~E 94 (606)
|||||.-+|+-.. +.. + ...-|.|...+...+.| ++..+.|+||||... ....
T Consensus 1 GKSsLiN~L~~~~--~~~------v------~~~~gtT~~~~~~~~~~-----~~~~i~liDTPGi~~~~~~~~~~~~~~ 61 (106)
T pfam01926 1 GKSTLINALTGKK--RAI------V------SDYPGTTRDPNEGRVEL-----DGKQIILVDTPGIIEGASKGEGELGNR 61 (106)
T ss_pred CHHHHHHHHHCCC--CEE------E------CCCCCCCCCCEEEEEEE-----CCEEEEEEECCCCCCCCCHHHHHHHHH
T ss_conf 9127999997888--555------5------28899884635589988-----998899983787322650467888999
Q ss_pred HHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf 999997302689999868788655899999999709967998326
Q gi|254780321|r 95 VSRSLSACEGSLLVVDATQGVEAQTLANVYQAIDNNHEIITVLNK 139 (606)
Q Consensus 95 V~r~l~a~dgaiLvVdA~~Gvq~QT~~~~~~A~~~~l~~I~viNK 139 (606)
..+++..+|.+++|+||.+++..+....+....+.+.|+|+++||
T Consensus 62 ~~~~~~~~d~il~viD~~~~~~~~d~~~~~~l~~~~~p~iiv~NK 106 (106)
T pfam01926 62 TLEAIEEADLILHVVDASEGLTEEDLEILDLLLELGKPVILVLNK 106 (106)
T ss_pred HHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEEC
T ss_conf 997234573799999999999989999999999869988999939
No 234
>pfam09439 SRPRB Signal recognition particle receptor beta subunit. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase which anchors the alpha subunit to the endoplasmic reticulum membrane.
Probab=99.02 E-value=7.8e-09 Score=78.79 Aligned_cols=123 Identities=27% Similarity=0.407 Sum_probs=75.0
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHCCEEEEEEEEEEEECCCCCEEEEEEEECCCCCHH
Q ss_conf 17999801389877889999998298054444311305867798719505232799997437884389999617873002
Q gi|254780321|r 12 RNFSIVAHIDHGKSTLADRFIQHCRGLTEREMSSQVLDNMDIERERGITIKAQTVRLNYTSTDAKDYQLNLIDTPGHVDF 91 (606)
Q Consensus 12 RN~~IiaHvDhGKTTL~d~lL~~tg~i~~~~~~~~vlD~~~~EreRGITIka~~~~~~~~~~~~~~y~iNlIDTPGH~DF 91 (606)
+-|-|+|=-|+|||||.-+|. .|.... ++ -++ . .++...+.. .+...+++||+|||.-+
T Consensus 4 ptvLllGl~~sGKT~Lf~~L~--~~~~~~-----T~-tS~----------~-~n~~~~~~~--~~~~~~~lvD~PGh~kl 62 (181)
T pfam09439 4 PAVIIAGLCDSGKTSLFTLLT--TGSVRK-----TV-TSQ----------E-PSAAYKYMN--NKGNSLTLIDFPGHVKL 62 (181)
T ss_pred CEEEEECCCCCCHHHHHHHHH--CCCCCC-----EE-CCC----------C-CCCEEEEEC--CCCCEEEEEECCCCHHH
T ss_conf 869998689998999999997--599487-----58-886----------7-864068751--68966899988996899
Q ss_pred HHHHHHH---HHHCCEEEEEEECCCC--CCHHHHHHHHHHH------HCCCCEEEEECCCCCCCCCCCCHHH-HHH
Q ss_conf 7999999---9730268999986878--8655899999999------7099679983267887532113388-877
Q gi|254780321|r 92 TYEVSRS---LSACEGSLLVVDATQG--VEAQTLANVYQAI------DNNHEIITVLNKADLPSADPDRVKK-QIE 155 (606)
Q Consensus 92 ~~EV~r~---l~a~dgaiLvVdA~~G--vq~QT~~~~~~A~------~~~l~~I~viNKiD~~~A~~e~v~~-ei~ 155 (606)
....... ...+.|.|.|||++.- -...+.+.+|-.+ ..++|++++.||.|++.|.+...+. ++|
T Consensus 63 R~~~~~~~~~~~~~~gIVfVVDS~~~~~~l~~~Ae~Ly~iL~~~~~~~~~vPvLI~cNKqDl~~A~~~~~Ik~~LE 138 (181)
T pfam09439 63 RYKLLETLKDSSSLRGLVFVVDSTAFPKEVTDTAEFLYDILSITELLKNGIDILIACNKQEIFTARPPKKIKQALE 138 (181)
T ss_pred HHHHHHHHHHHCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHCHHHCCCCCCEEEEEECCCCCCCCCHHHHHHHHH
T ss_conf 9999986430026449999997866566799999999999844543368997899973746335779999999999
No 235
>KOG1423 consensus
Probab=99.01 E-value=8.7e-09 Score=78.46 Aligned_cols=162 Identities=24% Similarity=0.294 Sum_probs=100.9
Q ss_pred HHHCEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHCCEEEEEEEEEEEECCCCCEEEEEEEECCC
Q ss_conf 52531799980138987788999999829805444431130586779871950523279999743788438999961787
Q gi|254780321|r 8 LSRIRNFSIVAHIDHGKSTLADRFIQHCRGLTEREMSSQVLDNMDIERERGITIKAQTVRLNYTSTDAKDYQLNLIDTPG 87 (606)
Q Consensus 8 ~~~IRN~~IiaHvDhGKTTL~d~lL~~tg~i~~~~~~~~vlD~~~~EreRGITIka~~~~~~~~~~~~~~y~iNlIDTPG 87 (606)
-.++-++|+||--..|||||+..|+-. . +.. +.+.+.--|. .+.-.+.. .++++=|.||||
T Consensus 69 ~~k~L~vavIG~PNvGKStLtN~mig~-k-v~~------vS~K~~TTr~--------~ilgi~ts---~eTQlvf~DTPG 129 (379)
T KOG1423 69 AQKSLYVAVIGAPNVGKSTLTNQMIGQ-K-VSA------VSRKVHTTRH--------RILGIITS---GETQLVFYDTPG 129 (379)
T ss_pred CCEEEEEEEECCCCCCHHHHHHHHHCC-C-CCC------CCCCCCCEEE--------EEEEEEEC---CCEEEEEECCCC
T ss_conf 115789999708976545544576487-2-120------1156653020--------13578715---965899964876
Q ss_pred CCH------------HHHHHHHHHHHCCEEEEEEECCCCCCHHH-HHHHHHHHH-CCCCEEEEECCCCCCCCC-------
Q ss_conf 300------------27999999973026899998687886558-999999997-099679983267887532-------
Q gi|254780321|r 88 HVD------------FTYEVSRSLSACEGSLLVVDATQGVEAQT-LANVYQAID-NNHEIITVLNKADLPSAD------- 146 (606)
Q Consensus 88 H~D------------F~~EV~r~l~a~dgaiLvVdA~~Gvq~QT-~~~~~~A~~-~~l~~I~viNKiD~~~A~------- 146 (606)
-+- |.....+|+.-+|.+++|+||.. ...++ -.+++...+ ..+|-|.|+||+|.+--.
T Consensus 130 lvs~~~~r~~~l~~s~lq~~~~a~q~AD~vvVv~Das~-tr~~l~p~vl~~l~~ys~ips~lvmnkid~~k~k~~Ll~l~ 208 (379)
T KOG1423 130 LVSKKMHRRHHLMMSVLQNPRDAAQNADCVVVVVDASA-TRTPLHPRVLHMLEEYSKIPSILVMNKIDKLKQKRLLLNLK 208 (379)
T ss_pred CCCCCHHHHHHHHHHHHHCHHHHHHHCCEEEEEEECCC-CCCCCCHHHHHHHHHHHCCCCEEECCCHHCCHHHHHHHHHH
T ss_conf 45334135678888765378988863887999985567-76756807877789986187203304000221466776667
Q ss_pred -------CCCHHHHHHHHHHHHH--------------HHHHHHHHHCCCCCCHHHHHHHHHHHC
Q ss_conf -------1133888775553223--------------210001110022320067877632100
Q gi|254780321|r 147 -------PDRVKKQIEETIGIST--------------EDALLVSAKTGEGIPLLLERIVQQLPS 189 (606)
Q Consensus 147 -------~e~v~~ei~~~~g~~~--------------~~ii~vSAktG~GV~~LLd~Iv~~iP~ 189 (606)
...-+.++.+.|-..+ ++++++||++|.||++|-+.+....|+
T Consensus 209 ~~Lt~g~l~~~kl~v~~~f~~~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa~~ 272 (379)
T KOG1423 209 DLLTNGELAKLKLEVQEKFTDVPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQAPP 272 (379)
T ss_pred HHCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHCCCC
T ss_conf 7605551003456588873559743356432476453148998404666789999999723799
No 236
>TIGR00437 feoB ferrous iron transport protein B; InterPro: IPR003373 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent .; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0009276 1-2nm peptidoglycan-based cell wall, 0016021 integral to membrane.
Probab=98.99 E-value=1.3e-09 Score=83.99 Aligned_cols=136 Identities=25% Similarity=0.411 Sum_probs=97.1
Q ss_pred CCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHCCEEEEEEEEEEEECCCCCEEEEEEEECCCCCHH---HH---
Q ss_conf 389877889999998298054444311305867798719505232799997437884389999617873002---79---
Q gi|254780321|r 20 IDHGKSTLADRFIQHCRGLTEREMSSQVLDNMDIERERGITIKAQTVRLNYTSTDAKDYQLNLIDTPGHVDF---TY--- 93 (606)
Q Consensus 20 vDhGKTTL~d~lL~~tg~i~~~~~~~~vlD~~~~EreRGITIka~~~~~~~~~~~~~~y~iNlIDTPGH~DF---~~--- 93 (606)
-.-|||||--+| ||. .-..+|.= |.|+--+...+.+ +++.|.+||+||=-+| |+
T Consensus 3 PNVGKStlFN~L---TG~--~~~vGNwP----------G~TVek~eg~l~~-----~g~~i~ivDLPG~YSL~~~S~~dE 62 (733)
T TIGR00437 3 PNVGKSTLFNAL---TGA--NQKVGNWP----------GVTVEKKEGKLKF-----QGEDIEIVDLPGIYSLTTFSGLDE 62 (733)
T ss_pred CCCHHHHHHHHH---HCC--CEEEEECC----------CCEEEEEEEEEEE-----CCEEEEEEECCCCCCCCCCCCCHH
T ss_conf 981589999874---158--70787358----------8707877889752-----462789984487300589987427
Q ss_pred HHHHHHH---HCCEEEEEEECCCCCCHHHHHHHHHH---HHCCCCEEEEECCCCCCCCCCCCH---HHHHHHHHHHHHHH
Q ss_conf 9999997---30268999986878865589999999---970996799832678875321133---88877555322321
Q gi|254780321|r 94 EVSRSLS---ACEGSLLVVDATQGVEAQTLANVYQA---IDNNHEIITVLNKADLPSADPDRV---KKQIEETIGISTED 164 (606)
Q Consensus 94 EV~r~l~---a~dgaiLvVdA~~Gvq~QT~~~~~~A---~~~~l~~I~viNKiD~~~A~~e~v---~~ei~~~~g~~~~~ 164 (606)
+|.|.-- ..|-.|-||||+. =+.|+++. ++.|+|.|+++|++|. |+-+-+ .+-+++.+|+.
T Consensus 63 ~v~~dyl~~e~~DLv~nVVDA~n-----LERnL~LTLQL~E~G~p~i~~LN~~De--A~k~GI~Id~~~Lee~LGvP--- 132 (733)
T TIGR00437 63 KVARDYLLNEKPDLVVNVVDASN-----LERNLYLTLQLLELGIPMILALNLVDE--AEKKGIRIDEEKLEERLGVP--- 132 (733)
T ss_pred HHHHHHHHCCCCCEEEEEECHHH-----HHHHHHHHHHHHHHCCHHHHHHHHHHH--HHHCCCEECHHHHHHHCCCC---
T ss_conf 99989975389967999725667-----778999999999716258568726789--97729631257775433865---
Q ss_pred HHHHHHHCCCCCCHHHHHHHH
Q ss_conf 000111002232006787763
Q gi|254780321|r 165 ALLVSAKTGEGIPLLLERIVQ 185 (606)
Q Consensus 165 ii~vSAktG~GV~~LLd~Iv~ 185 (606)
++++||..|.|+++|.++|.+
T Consensus 133 Vv~~~A~~g~G~~~L~~~i~~ 153 (733)
T TIGR00437 133 VVPTSATEGRGIEELKDAIRE 153 (733)
T ss_pred EEEEEEEECCCHHHHHHHHHH
T ss_conf 256532105778999999999
No 237
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=98.98 E-value=2.4e-08 Score=75.51 Aligned_cols=149 Identities=17% Similarity=0.265 Sum_probs=97.0
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHCCEEEEEEEEEEEECCCCCEEEEEEEECCCCCHHHH
Q ss_conf 99980138987788999999829805444431130586779871950523279999743788438999961787300279
Q gi|254780321|r 14 FSIVAHIDHGKSTLADRFIQHCRGLTEREMSSQVLDNMDIERERGITIKAQTVRLNYTSTDAKDYQLNLIDTPGHVDFTY 93 (606)
Q Consensus 14 ~~IiaHvDhGKTTL~d~lL~~tg~i~~~~~~~~vlD~~~~EreRGITIka~~~~~~~~~~~~~~y~iNlIDTPGH~DF~~ 93 (606)
++++|...-|||+|+-|++ +|.+.... .+.. | .. .+ .+. .+++.+.+.|.||.|...|.
T Consensus 3 ivllGd~~VGKTsl~~Rf~--~~~F~~~~--------~pt~---~-~~-~~--~~~---vdg~~~~l~i~DTaG~~~~~- 61 (158)
T cd04103 3 LGIVGNLQSGKSALVHRYL--TGSYVQLE--------SPEG---G-RF-KK--EVL---VDGQSHLLLIRDEGGAPDAQ- 61 (158)
T ss_pred EEEECCCCCCHHHHHHHHH--HCCCCCCC--------CCCC---C-EE-EE--EEE---ECCEEEEEEEEECCCCCCHH-
T ss_conf 9999969987999999998--09478744--------4664---4-17-99--999---99999999999589983433-
Q ss_pred HHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHH--H---CCCCEEEEECCCCCCCCCCCCHH-HHHHHHH-HHHHHHHH
Q ss_conf 9999997302689999868788655899999999--7---09967998326788753211338-8877555-32232100
Q gi|254780321|r 94 EVSRSLSACEGSLLVVDATQGVEAQTLANVYQAI--D---NNHEIITVLNKADLPSADPDRVK-KQIEETI-GISTEDAL 166 (606)
Q Consensus 94 EV~r~l~a~dgaiLvVdA~~Gvq~QT~~~~~~A~--~---~~l~~I~viNKiD~~~A~~e~v~-~ei~~~~-g~~~~~ii 166 (606)
.++.+||+|||-|-+.=--=+....|+.-+ . ..+|+|+|=||-|+...+...|. ++.+.+. .+..-..+
T Consensus 62 ----~~~~ada~ilVydit~~~SF~~v~~~~~~i~~~~~~~~ipiilvGnK~dl~~~~~r~V~~~e~~~~a~~~~~~~f~ 137 (158)
T cd04103 62 ----FASWVDAVIFVFSLENEASFQTVYNLYHQLSSYRNISEIPLILVGTQDAISESNPRVIDDARARQLCADMKRCSYY 137 (158)
T ss_pred ----HHCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCEECCHHHHHHHHHHCCCCEEE
T ss_conf ----3214998999998898889999999999999855978996899987700365776147999999999856998899
Q ss_pred HHHHHCCCCCCHHHHHHHHHH
Q ss_conf 011100223200678776321
Q gi|254780321|r 167 LVSAKTGEGIPLLLERIVQQL 187 (606)
Q Consensus 167 ~vSAktG~GV~~LLd~Iv~~i 187 (606)
.+||++|.||+.+++.+++.+
T Consensus 138 EtSAk~~~NV~~~F~~~~~~i 158 (158)
T cd04103 138 ETCATYGLNVERVFQEAAQKI 158 (158)
T ss_pred EEECCCCCCHHHHHHHHHHHC
T ss_conf 901799959899999999639
No 238
>PTZ00099 rab6; Provisional
Probab=98.97 E-value=7e-09 Score=79.11 Aligned_cols=116 Identities=23% Similarity=0.263 Sum_probs=80.5
Q ss_pred CCCCEEEEEEEECCCCCHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHH-HH---CCCCEEEEECCCCCCCCCCC
Q ss_conf 788438999961787300279999999730268999986878865589999999-97---09967998326788753211
Q gi|254780321|r 73 TDAKDYQLNLIDTPGHVDFTYEVSRSLSACEGSLLVVDATQGVEAQTLANVYQA-ID---NNHEIITVLNKADLPSADPD 148 (606)
Q Consensus 73 ~~~~~y~iNlIDTPGH~DF~~EV~r~l~a~dgaiLvVdA~~Gvq~QT~~~~~~A-~~---~~l~~I~viNKiD~~~A~~e 148 (606)
.+++.++++|.||+|+..|..-+....+-++|+|||-|-+.=--=+....|..- +. .++++++|=||+|+..-+
T Consensus 24 i~~~~v~l~IWDTAGqE~f~sl~~~y~r~a~~~ilVyDit~~~SF~~l~~W~~~i~~~~~~~~~iiLVGNK~DL~~~r-- 101 (176)
T PTZ00099 24 LDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERGKDVIIALVGNKTDLGDLR-- 101 (176)
T ss_pred ECCEEEEEEEEECCCCCCHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCHHHHC--
T ss_conf 999999999997998634135768870798679998504207789999999999998538877439998556558616--
Q ss_pred CH-HHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCC
Q ss_conf 33-8887755532232100011100223200678776321000
Q gi|254780321|r 149 RV-KKQIEETIGISTEDALLVSAKTGEGIPLLLERIVQQLPSP 190 (606)
Q Consensus 149 ~v-~~ei~~~~g~~~~~ii~vSAktG~GV~~LLd~Iv~~iP~P 190 (606)
.| .+|..++-.--.-..+.+|||+|.||+++++.|+..++.-
T Consensus 102 ~V~~ee~~~~A~~~~~~f~EtSAktg~nV~e~F~~la~~i~~~ 144 (176)
T PTZ00099 102 KVTYEEGMQKAQEYNTMFHETSAKAGHNIKVLFKKIAAKLPNL 144 (176)
T ss_pred CCCHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHCCH
T ss_conf 8599999999998599999984899949899999999986080
No 239
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=98.92 E-value=4.6e-08 Score=73.64 Aligned_cols=160 Identities=20% Similarity=0.229 Sum_probs=97.7
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHCCEEEEEEEEEEEECCCCCEEEEEEEECCCCCHH
Q ss_conf 17999801389877889999998298054444311305867798719505232799997437884389999617873002
Q gi|254780321|r 12 RNFSIVAHIDHGKSTLADRFIQHCRGLTEREMSSQVLDNMDIERERGITIKAQTVRLNYTSTDAKDYQLNLIDTPGHVDF 91 (606)
Q Consensus 12 RN~~IiaHvDhGKTTL~d~lL~~tg~i~~~~~~~~vlD~~~~EreRGITIka~~~~~~~~~~~~~~y~iNlIDTPGH~DF 91 (606)
.-+.++|..+.|||||+-++.. +.+.+. ...||-.....-... ......++.++||+|+.+|
T Consensus 6 ~kivv~G~~g~GKTtl~~~l~~--~~~~~~---------------~~~t~~~~~~~~~~~-~~~~~~~~~~~Dt~gq~~~ 67 (219)
T COG1100 6 FKIVVLGDGGVGKTTLLNRLVG--DEFPEG---------------YPPTIGNLDPAKTIE-PYRRNIKLQLWDTAGQEEY 67 (219)
T ss_pred EEEEEECCCCCCHHHHHHHHHC--CCCCCC---------------CCCCEEECCCCCEEE-CCCCCEEEEEEECCCHHHH
T ss_conf 7999999999988999999964--767655---------------676145404320362-2666002676767986999
Q ss_pred HHHHHHHHHHCCEEEEEEECCCCCCH-HHHHHHHHHHHC----CCCEEEEECCCCCCCCCCCCHH-----------HHHH
Q ss_conf 79999999730268999986878865-589999999970----9967998326788753211338-----------8877
Q gi|254780321|r 92 TYEVSRSLSACEGSLLVVDATQGVEA-QTLANVYQAIDN----NHEIITVLNKADLPSADPDRVK-----------KQIE 155 (606)
Q Consensus 92 ~~EV~r~l~a~dgaiLvVdA~~Gvq~-QT~~~~~~A~~~----~l~~I~viNKiD~~~A~~e~v~-----------~ei~ 155 (606)
..-.......++|+++++|...-... +....|...+.. +.+++.+-||+|+......... ....
T Consensus 68 ~~~~~~y~~~~~~~l~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 147 (219)
T COG1100 68 RSLRPEYYRGANGILIVYDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKIDLFDEQSSSEEILNQLNREVVLLVLA 147 (219)
T ss_pred HHHHHHCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCHHHHHHHHHHHCCCCEEHHHH
T ss_conf 99887504389789999976205657889999999998746688679996976105543013678877532453000222
Q ss_pred HH---H-HHHHHHHHHHHHH--CCCCCCHHHHHHHHHHHCC
Q ss_conf 55---5-3223210001110--0223200678776321000
Q gi|254780321|r 156 ET---I-GISTEDALLVSAK--TGEGIPLLLERIVQQLPSP 190 (606)
Q Consensus 156 ~~---~-g~~~~~ii~vSAk--tG~GV~~LLd~Iv~~iP~P 190 (606)
.. . ..... .+.+||+ ++.+|..++..+...+...
T Consensus 148 ~~~~~~~~~~~~-~~~~s~~~~~~~~v~~~~~~~~~~~~~~ 187 (219)
T COG1100 148 PKAVLPEVANPA-LLETSAKSLTGPNVNELFKELLRKLLEE 187 (219)
T ss_pred HHHHHHHHHHHH-HHEEEEECCCCCCHHHHHHHHHHHHHHH
T ss_conf 344423320004-4324210167878789999999999886
No 240
>cd03693 EF1_alpha_II EF1_alpha_II: this family represents the domain II of elongation factor 1-alpha (EF-1a) that is found in archaea and all eukaryotic lineages. EF-1A is very abundant in the cytosol, where it is involved in the GTP-dependent binding of aminoacyl-tRNAs to the A site of the ribosomes in the second step of translation from mRNAs to proteins. Both domain II of EF1A and domain IV of IF2/eIF5B have been implicated in recognition of the 3'-ends of tRNA. More than 61% of eukaryotic elongation factor 1A (eEF-1A) in cells is estimated to be associated with actin cytoskeleton. The binding of eEF1A to actin is a noncanonical function that may link two distinct cellular processes, cytoskeleton organization and gene expression.
Probab=98.91 E-value=8.9e-10 Score=85.10 Aligned_cols=88 Identities=18% Similarity=0.369 Sum_probs=75.4
Q ss_pred HCCCCCCCCCEEECCCCCEEEEEEECCCCCCCCCEEEEECCCCCCCCCCCCCCCCCEEEEHHCCCCC-HHHHHHCCCCCC
Q ss_conf 0123310121011475725999981698735584588733556421012223355412401012471-233220110024
Q gi|254780321|r 197 NAPLKALLIDSWYNSYLGVMVLVRIINGQLTKGQSIRLMGTNAKYQVERIGILTPKMIDIEALYPGE-IGVMIASIKEVS 275 (606)
Q Consensus 197 ~~Pl~alVfds~~D~~~G~I~~~RV~sG~lk~Gd~I~~~~~g~~~~v~~ig~~~~~~~~v~~l~aGd-VG~ii~gik~l~ 275 (606)
|+|||+.|-+.+..+..|.|+.|+|.+|+|+.||++.+++++.+.+|..+.. +..+++++.||| ||.-+.++ +..
T Consensus 2 dkPlRmpId~vf~i~G~GtVvtG~v~~G~i~~gd~v~i~P~~~~~~VksI~~---~~~~~~~a~aGd~v~l~L~gi-~~~ 77 (91)
T cd03693 2 DKPLRLPIQDVYKIGGIGTVPVGRVETGVLKPGMVVTFAPAGVTGEVKSVEM---HHEPLEEALPGDNVGFNVKNV-SKK 77 (91)
T ss_pred CCCEEEEEEEEEECCCCEEEEEEEEEECEEECCCEEEECCCCCEEEEEEEEE---CCCCCCEECCCCEEEEEECCC-CHH
T ss_conf 9875889988997299569999998117785799977278643379999999---884958888998999998799-899
Q ss_pred CCCCCCEECCCCC
Q ss_conf 4445420004667
Q gi|254780321|r 276 HTRVGDTITDDSS 288 (606)
Q Consensus 276 ~~~vGDTl~~~~~ 288 (606)
+++.||.||++++
T Consensus 78 ~i~rG~Vl~~~~n 90 (91)
T cd03693 78 DIKRGDVAGDSKN 90 (91)
T ss_pred HCCCCCEEECCCC
T ss_conf 9267689955689
No 241
>KOG0092 consensus
Probab=98.87 E-value=3.2e-08 Score=74.64 Aligned_cols=159 Identities=23% Similarity=0.270 Sum_probs=96.2
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHCCEEEEEEEEEEEECCCCCEEEEEEEECCCCCHHHH
Q ss_conf 99980138987788999999829805444431130586779871950523279999743788438999961787300279
Q gi|254780321|r 14 FSIVAHIDHGKSTLADRFIQHCRGLTEREMSSQVLDNMDIERERGITIKAQTVRLNYTSTDAKDYQLNLIDTPGHVDFTY 93 (606)
Q Consensus 14 ~~IiaHvDhGKTTL~d~lL~~tg~i~~~~~~~~vlD~~~~EreRGITIka~~~~~~~~~~~~~~y~iNlIDTPGH~DF~~ 93 (606)
++++|-...|||||+.|+. .|.+.+.. | =||-+.-.+-.+...+ ...++-|.||-|..-|.+
T Consensus 8 vvLLG~~~VGKSSlV~Rfv--k~~F~e~~-----------e----~TIGaaF~tktv~~~~-~~ikfeIWDTAGQERy~s 69 (200)
T KOG0092 8 VVLLGDSGVGKSSLVLRFV--KDQFHENI-----------E----PTIGAAFLTKTVTVDD-NTIKFEIWDTAGQERYHS 69 (200)
T ss_pred EEEECCCCCCCHHHHHHHH--HCCCCCCC-----------C----CCCCEEEEEEEEEECC-CEEEEEEEECCCCCCCCC
T ss_conf 9998678777024112223--27566323-----------4----5400078999998489-578999987677300335
Q ss_pred HHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCC-C-EEE--EECCCCCCCCCCCCH-HHHHHHHHHHHHHHHHHH
Q ss_conf 99999973026899998687886558999999997099-6-799--832678875321133-888775553223210001
Q gi|254780321|r 94 EVSRSLSACEGSLLVVDATQGVEAQTLANVYQAIDNNH-E-IIT--VLNKADLPSADPDRV-KKQIEETIGISTEDALLV 168 (606)
Q Consensus 94 EV~r~l~a~dgaiLvVdA~~Gvq~QT~~~~~~A~~~~l-~-~I~--viNKiD~~~A~~e~v-~~ei~~~~g~~~~~ii~v 168 (606)
=..--.|-++.||+|-|.++-=-=++..+|-+-+.... | +++ |=||+|+...+ +| .+|..+.-+-..--.+-+
T Consensus 70 lapMYyRgA~AAivvYDit~~~SF~~aK~WvkeL~~~~~~~~vialvGNK~DL~~~R--~V~~~ea~~yAe~~gll~~ET 147 (200)
T KOG0092 70 LAPMYYRGANAAIVVYDITDEESFEKAKNWVKELQRQASPNIVIALVGNKADLLERR--EVEFEEAQAYAESQGLLFFET 147 (200)
T ss_pred CCCCEECCCCEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHCCC--CCCHHHHHHHHHHCCCEEEEE
T ss_conf 561010477679999855667899999999999986279875999832516541034--546888898998549879998
Q ss_pred HHHCCCCCCHHHHHHHHHHHCCCC
Q ss_conf 110022320067877632100011
Q gi|254780321|r 169 SAKTGEGIPLLLERIVQQLPSPTS 192 (606)
Q Consensus 169 SAktG~GV~~LLd~Iv~~iP~P~~ 192 (606)
|||||.||++|+.+|.+.+|....
T Consensus 148 SAKTg~Nv~~if~~Ia~~lp~~~~ 171 (200)
T KOG0092 148 SAKTGENVNEIFQAIAEKLPCSDP 171 (200)
T ss_pred ECCCCCCHHHHHHHHHHHCCCCCC
T ss_conf 525565899999999975667662
No 242
>COG2262 HflX GTPases [General function prediction only]
Probab=98.87 E-value=3.8e-08 Score=74.16 Aligned_cols=154 Identities=29% Similarity=0.388 Sum_probs=93.7
Q ss_pred HCEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHCCEEEEEEEEEEEECCCCCEEEEEEEECCCCC
Q ss_conf 53179998013898778899999982980544443113058677987195052327999974378843899996178730
Q gi|254780321|r 10 RIRNFSIVAHIDHGKSTLADRFIQHCRGLTEREMSSQVLDNMDIERERGITIKAQTVRLNYTSTDAKDYQLNLIDTPGHV 89 (606)
Q Consensus 10 ~IRN~~IiaHvDhGKTTL~d~lL~~tg~i~~~~~~~~vlD~~~~EreRGITIka~~~~~~~~~~~~~~y~iNlIDTPGH~ 89 (606)
.+--|+++|--.+|||||.-+| ||...- ..+++--+++ ..+=.+.+ .++ ..+-|-||=|..
T Consensus 191 ~~p~vaLvGYTNAGKSTL~N~L---T~~~~~--~~d~LFATLd----------pttR~~~l--~~g--~~vlLtDTVGFI 251 (411)
T COG2262 191 GIPLVALVGYTNAGKSTLFNAL---TGADVY--VADQLFATLD----------PTTRRIEL--GDG--RKVLLTDTVGFI 251 (411)
T ss_pred CCCEEEEEEECCCCHHHHHHHH---HCCCEE--CCCCCCCCCC----------CCEEEEEE--CCC--CEEEEECCCCCC
T ss_conf 9975898732344499999887---245713--0466642105----------74048980--799--649986575671
Q ss_pred H---------HHHHHHHHHHHCCEEEEEEECCCC-CCHHHHHHHHHHHHC---CCCEEEEECCCCCCCCCCCCHHHHHHH
Q ss_conf 0---------279999999730268999986878-865589999999970---996799832678875321133888775
Q gi|254780321|r 90 D---------FTYEVSRSLSACEGSLLVVDATQG-VEAQTLANVYQAIDN---NHEIITVLNKADLPSADPDRVKKQIEE 156 (606)
Q Consensus 90 D---------F~~EV~r~l~a~dgaiLvVdA~~G-vq~QT~~~~~~A~~~---~l~~I~viNKiD~~~A~~e~v~~ei~~ 156 (606)
+ |..--+. ..-+|-.|.||||++- +..|-.++...-.+. ..|+|+|.||+|+-... + ....+..
T Consensus 252 ~~LP~~LV~AFksTLEE-~~~aDlllhVVDaSdp~~~~~~~~v~~vL~el~~~~~p~i~v~NKiD~~~~~-~-~~~~~~~ 328 (411)
T COG2262 252 RDLPHPLVEAFKSTLEE-VKEADLLLHVVDASDPEILEKLEAVEDVLAEIGADEIPIILVLNKIDLLEDE-E-ILAELER 328 (411)
T ss_pred CCCCHHHHHHHHHHHHH-HHCCCEEEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCH-H-HHHHHHH
T ss_conf 55986799999998987-6227779997406885189999999999997488999789997641015732-2-2345663
Q ss_pred HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHC
Q ss_conf 553223210001110022320067877632100
Q gi|254780321|r 157 TIGISTEDALLVSAKTGEGIPLLLERIVQQLPS 189 (606)
Q Consensus 157 ~~g~~~~~ii~vSAktG~GV~~LLd~Iv~~iP~ 189 (606)
.. + +.+++||++|.|++.|.+.|.+.++.
T Consensus 329 ~~---~-~~v~iSA~~~~gl~~L~~~i~~~l~~ 357 (411)
T COG2262 329 GS---P-NPVFISAKTGEGLDLLRERIIELLSG 357 (411)
T ss_pred CC---C-CEEEEEECCCCCHHHHHHHHHHHHHH
T ss_conf 48---9-74899806675989999999998631
No 243
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=98.87 E-value=3.6e-07 Score=67.64 Aligned_cols=159 Identities=22% Similarity=0.239 Sum_probs=99.3
Q ss_pred CCCCHHHCEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHCCEEEEE-EEEEEEECCCCCEEEEEE
Q ss_conf 8998525317999801389877889999998298054444311305867798719505232-799997437884389999
Q gi|254780321|r 4 KPTPLSRIRNFSIVAHIDHGKSTLADRFIQHCRGLTEREMSSQVLDNMDIERERGITIKAQ-TVRLNYTSTDAKDYQLNL 82 (606)
Q Consensus 4 ~~~p~~~IRN~~IiaHvDhGKTTL~d~lL~~tg~i~~~~~~~~vlD~~~~EreRGITIka~-~~~~~~~~~~~~~y~iNl 82 (606)
-|.|..----+.++|...-|||+|.-++. .+.+.+.- --||... +..+. .+++.+.++|
T Consensus 6 ~~~p~~~~~KiVlVGD~~VGKTsLl~~~~--~~~F~~~y---------------~pTv~~~~~~~i~---v~~~~v~L~l 65 (232)
T cd04174 6 IPQPLVMRCKLVLVGDVQCGKTAMLQVLA--KDCYPETY---------------VPTVFENYTAGLE---TEEQRVELSL 65 (232)
T ss_pred CCCCCCEEEEEEEECCCCCCHHHHHHHHH--HCCCCCCC---------------CCCEEEEEEEEEE---ECCEEEEEEE
T ss_conf 99998558899999989989999999997--39899985---------------8836888899999---9999999999
Q ss_pred EECCCCCHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHH----HHHHH-H--CCCCEEEEECCCCCCCCCCCCHHHHHH
Q ss_conf 6178730027999999973026899998687886558999----99999-7--099679983267887532113388877
Q gi|254780321|r 83 IDTPGHVDFTYEVSRSLSACEGSLLVVDATQGVEAQTLAN----VYQAI-D--NNHEIITVLNKADLPSADPDRVKKQIE 155 (606)
Q Consensus 83 IDTPGH~DF~~EV~r~l~a~dgaiLvVdA~~Gvq~QT~~~----~~~A~-~--~~l~~I~viNKiD~~~A~~e~v~~ei~ 155 (606)
.||-|+.+|..-..-..+-+|++||+-|-+ .++|..+ |..-+ + -+.++|+|=||+|+.. |+. +..++.
T Consensus 66 WDTAGqE~y~~lr~~yY~~a~~~ll~Fdvt---~~~Sfe~~~~~Wi~Ei~~~~p~~piiLVGnK~DLr~-d~~-~l~~L~ 140 (232)
T cd04174 66 WDTSGSPYYDNVRPLCYSDSDAVLLCFDIS---RPETVDSALKKWKAEIMDYCPSTRILLIGCKTDLRT-DLS-TLMELS 140 (232)
T ss_pred EECCCCCCCCHHHHHHHCCCCEEEEEEECC---CHHHHHHHHHHHHHHHHHHCCCCCEEEEEECHHCCC-CHH-HHHHHH
T ss_conf 838997010036799740687899999689---879999899999999998689997899987602154-757-788997
Q ss_pred H-------------HH-HHHHHHHHHHHHHCCC-CCCHHHHHHHHHH
Q ss_conf 5-------------55-3223210001110022-3200678776321
Q gi|254780321|r 156 E-------------TI-GISTEDALLVSAKTGE-GIPLLLERIVQQL 187 (606)
Q Consensus 156 ~-------------~~-g~~~~~ii~vSAktG~-GV~~LLd~Iv~~i 187 (606)
+ +- .+.+...+-|||+||. ||+++++.....+
T Consensus 141 ~~~~~pVt~eeg~~~Ak~iga~~Y~E~SA~tge~~v~~vF~~a~~~~ 187 (232)
T cd04174 141 NQKQAPISYEQGCALAKQLGAEVYLECSAFTSEKSIHSIFRSASLLC 187 (232)
T ss_pred HCCCCCCCHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHH
T ss_conf 56888757999999999749978998756866625999999999999
No 244
>COG1084 Predicted GTPase [General function prediction only]
Probab=98.86 E-value=1.1e-07 Score=71.19 Aligned_cols=153 Identities=23% Similarity=0.362 Sum_probs=98.0
Q ss_pred HCEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHCCEEEEEEEEEEEECCCCCEEEEEEEECCCCC
Q ss_conf 53179998013898778899999982980544443113058677987195052327999974378843899996178730
Q gi|254780321|r 10 RIRNFSIVAHIDHGKSTLADRFIQHCRGLTEREMSSQVLDNMDIERERGITIKAQTVRLNYTSTDAKDYQLNLIDTPGHV 89 (606)
Q Consensus 10 ~IRN~~IiaHvDhGKTTL~d~lL~~tg~i~~~~~~~~vlD~~~~EreRGITIka~~~~~~~~~~~~~~y~iNlIDTPGH~ 89 (606)
+.+.+.|.|+-.-|||||+-++ |++ +.+... | -.|- +.+.+.|...+|. ++-+|||||--
T Consensus 167 ~~pTivVaG~PNVGKSSlv~~l---T~A--kpEvA~----Y-------PFTT--K~i~vGhfe~~~~--R~QvIDTPGlL 226 (346)
T COG1084 167 DLPTIVVAGYPNVGKSSLVRKL---TTA--KPEVAP----Y-------PFTT--KGIHVGHFERGYL--RIQVIDTPGLL 226 (346)
T ss_pred CCCEEEEECCCCCCHHHHHHHH---HCC--CCCCCC----C-------CCCC--CCEEEEEEECCCC--EEEEECCCCCC
T ss_conf 9973898569987589999887---548--976678----8-------8533--6546765504870--58984288645
Q ss_pred HHH----HHHHH----HHHHC-CEEEEEEECCC----CCCHHHHHHHHHHH--HCCCCEEEEECCCCCCCCCCCCHHHHH
Q ss_conf 027----99999----99730-26899998687----88655899999999--709967998326788753211338887
Q gi|254780321|r 90 DFT----YEVSR----SLSAC-EGSLLVVDATQ----GVEAQTLANVYQAI--DNNHEIITVLNKADLPSADPDRVKKQI 154 (606)
Q Consensus 90 DF~----~EV~r----~l~a~-dgaiLvVdA~~----Gvq~QT~~~~~~A~--~~~l~~I~viNKiD~~~A~~e~v~~ei 154 (606)
|=- .++++ ||+-. +..|.++|+++ +++.|- +++.-. ..+.++++|+||+|. ++.++..+.-
T Consensus 227 DRPl~ErN~IE~qAi~AL~hl~~~IlF~~D~Se~cgy~lE~Q~--~L~~eIk~~f~~p~v~V~nK~D~--~~~e~~~~~~ 302 (346)
T COG1084 227 DRPLEERNEIERQAILALRHLAGVILFLFDPSETCGYSLEEQI--SLLEEIKELFKAPIVVVINKIDI--ADEEKLEEIE 302 (346)
T ss_pred CCCHHHHCHHHHHHHHHHHHHCCEEEEEECCCCCCCCCHHHHH--HHHHHHHHHCCCCEEEEEECCCC--CCHHHHHHHH
T ss_conf 7885773689999999999742858999768500289999999--99999998538876999741012--4666789999
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q ss_conf 75553223210001110022320067877632
Q gi|254780321|r 155 EETIGISTEDALLVSAKTGEGIPLLLERIVQQ 186 (606)
Q Consensus 155 ~~~~g~~~~~ii~vSAktG~GV~~LLd~Iv~~ 186 (606)
..+.....++.+.+|+..+.+++.+-+.+...
T Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~v~~~ 334 (346)
T COG1084 303 ASVLEEGGEEPLKISATKGCGLDKLREEVRKT 334 (346)
T ss_pred HHHHHHCCCCCCCEEEEEHHHHHHHHHHHHHH
T ss_conf 99876326554313543000178899999887
No 245
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=98.86 E-value=1.7e-07 Score=69.75 Aligned_cols=153 Identities=19% Similarity=0.201 Sum_probs=94.5
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHCCEEEEE-EEEEEEECCCCCEEEEEEEECCCCCHH
Q ss_conf 7999801389877889999998298054444311305867798719505232-799997437884389999617873002
Q gi|254780321|r 13 NFSIVAHIDHGKSTLADRFIQHCRGLTEREMSSQVLDNMDIERERGITIKAQ-TVRLNYTSTDAKDYQLNLIDTPGHVDF 91 (606)
Q Consensus 13 N~~IiaHvDhGKTTL~d~lL~~tg~i~~~~~~~~vlD~~~~EreRGITIka~-~~~~~~~~~~~~~y~iNlIDTPGH~DF 91 (606)
-+.++|...-|||+|.-|+. .+.+.+.- .. ||-.. +..+. .+++.+.++|.||+|+.+|
T Consensus 7 KivlvGd~~VGKTsLi~r~~--~~~F~~~y-~p--------------Ti~~~~~~~~~---i~~~~v~l~iwDTaGqe~f 66 (182)
T cd04172 7 KIVVVGDSQCGKTALLHVFA--KDCFPENY-VP--------------TVFENYTASFE---IDTQRIELSLWDTSGSPYY 66 (182)
T ss_pred EEEEECCCCCCHHHHHHHHH--HCCCCCCC-CC--------------EEEEEEEEEEE---ECCEEEEEEEEECCCCHHC
T ss_conf 99999999989999999998--39999986-87--------------35322689999---9999999999968986201
Q ss_pred HHHHHHHHHHCCEEEEEEECCCCCCHHHH-HHHHHHHH---CCCCEEEEECCCCCCCCCCCC----------HH-HHHHH
Q ss_conf 79999999730268999986878865589-99999997---099679983267887532113----------38-88775
Q gi|254780321|r 92 TYEVSRSLSACEGSLLVVDATQGVEAQTL-ANVYQAID---NNHEIITVLNKADLPSADPDR----------VK-KQIEE 156 (606)
Q Consensus 92 ~~EV~r~l~a~dgaiLvVdA~~Gvq~QT~-~~~~~A~~---~~l~~I~viNKiD~~~A~~e~----------v~-~ei~~ 156 (606)
..-.....+-+|++||+-|-++=--=+.. ..|..-.. -+.++|+|=||.|+....... |. +|-++
T Consensus 67 ~~l~~~~y~~~~~~ilvydit~~~Sf~~v~~~W~~ei~~~~~~~~iiLVGnK~DLr~~~~~~~~l~~~~~~~Vs~eeg~~ 146 (182)
T cd04172 67 DNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGAN 146 (182)
T ss_pred CCCCHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHCCCCCCCHHHHHH
T ss_conf 22125551278789999648977889999999999999868799889996171012441456677645677869999999
Q ss_pred HH-HHHHHHHHHHHHHCCC-CCCHHHHHHHH
Q ss_conf 55-3223210001110022-32006787763
Q gi|254780321|r 157 TI-GISTEDALLVSAKTGE-GIPLLLERIVQ 185 (606)
Q Consensus 157 ~~-g~~~~~ii~vSAktG~-GV~~LLd~Iv~ 185 (606)
+- .+.+...+-+||++|. ||+++++..+.
T Consensus 147 ~A~~~g~~~y~EtSAk~~~n~V~e~F~~a~~ 177 (182)
T cd04172 147 MAKQIGAATYIECSALQSENSVRDIFHVATL 177 (182)
T ss_pred HHHHCCCCEEEECCCCCCCCCHHHHHHHHHH
T ss_conf 9997699799991707899598999999999
No 246
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=98.86 E-value=2.3e-07 Score=68.91 Aligned_cols=147 Identities=17% Similarity=0.252 Sum_probs=92.4
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHCCEEEEE-EEEEEEECCCCCEEEEEEEECCCCCHHH
Q ss_conf 999801389877889999998298054444311305867798719505232-7999974378843899996178730027
Q gi|254780321|r 14 FSIVAHIDHGKSTLADRFIQHCRGLTEREMSSQVLDNMDIERERGITIKAQ-TVRLNYTSTDAKDYQLNLIDTPGHVDFT 92 (606)
Q Consensus 14 ~~IiaHvDhGKTTL~d~lL~~tg~i~~~~~~~~vlD~~~~EreRGITIka~-~~~~~~~~~~~~~y~iNlIDTPGH~DF~ 92 (606)
+.++|...-|||+|.-++. .+.+...- --||... +..+. .+++.+.++|.||.|..+|.
T Consensus 4 iVlvGD~~VGKTsLl~~f~--~~~F~~~y---------------~pTi~~~~~~~~~---vd~~~v~L~iWDTAGqE~y~ 63 (222)
T cd04173 4 IVVVGDAECGKTALLQVFA--KDAYPGSY---------------VPTVFENYTASFE---IDKRRIELNMWDTSGSSYYD 63 (222)
T ss_pred EEEECCCCCCHHHHHHHHH--CCCCCCCC---------------CCCEEEEEEEEEE---ECCEEEEEEEECCCCCCHHH
T ss_conf 9998989989899999996--39999984---------------7845877899999---99999999997688850345
Q ss_pred HHHHHHHHHCCEEEEEEECCCCCCHHHHHH---HHH-HHH---CCCCEEEEECCCCCCCCCCCCHHHHHHH---------
Q ss_conf 999999973026899998687886558999---999-997---0996799832678875321133888775---------
Q gi|254780321|r 93 YEVSRSLSACEGSLLVVDATQGVEAQTLAN---VYQ-AID---NNHEIITVLNKADLPSADPDRVKKQIEE--------- 156 (606)
Q Consensus 93 ~EV~r~l~a~dgaiLvVdA~~Gvq~QT~~~---~~~-A~~---~~l~~I~viNKiD~~~A~~e~v~~ei~~--------- 156 (606)
.-..-..+-+|++||+.|-+. ++|..+ +|. -.. .+.|+|+|=||+|+-. |++. ..++.+
T Consensus 64 ~lr~~yyr~a~~~llvfdit~---~~SF~~v~~~W~~ei~~~~p~~piiLVGnK~DLR~-d~~~-~~el~~~~~~pVt~e 138 (222)
T cd04173 64 NVRPLAYPDSDAVLICFDISR---PETLDSVLKKWQGETQEFCPNAKVVLVGCKLDMRT-DLAT-LRELSKQRLIPVTHE 138 (222)
T ss_pred HHHHHHCCCCCEEEEEEECCC---HHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCC-CHHH-HHHHHHCCCCCCCHH
T ss_conf 567875036989999983897---78899999999999998589997899958742456-8788-999985578887899
Q ss_pred ----HH-HHHHHHHHHHHHHCCC-CCCHHHHHHHH
Q ss_conf ----55-3223210001110022-32006787763
Q gi|254780321|r 157 ----TI-GISTEDALLVSAKTGE-GIPLLLERIVQ 185 (606)
Q Consensus 157 ----~~-g~~~~~ii~vSAktG~-GV~~LLd~Iv~ 185 (606)
+- .+.+...+-||||+|. ||+++++....
T Consensus 139 eg~~lA~~~ga~~y~EcSAk~~~n~V~evF~~a~~ 173 (222)
T cd04173 139 QGTVLAKQVGAVSYVECSSRSSERSVRDVFHVATV 173 (222)
T ss_pred HHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHH
T ss_conf 99999997699889988848687498999999999
No 247
>KOG1489 consensus
Probab=98.84 E-value=4.4e-08 Score=73.73 Aligned_cols=157 Identities=28% Similarity=0.452 Sum_probs=93.8
Q ss_pred CHHHCEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHCCEEEEEEEEEEEECCCCCEEEEEEEECC
Q ss_conf 85253179998013898778899999982980544443113058677987195052327999974378843899996178
Q gi|254780321|r 7 PLSRIRNFSIVAHIDHGKSTLADRFIQHCRGLTEREMSSQVLDNMDIERERGITIKAQTVRLNYTSTDAKDYQLNLIDTP 86 (606)
Q Consensus 7 p~~~IRN~~IiaHvDhGKTTL~d~lL~~tg~i~~~~~~~~vlD~~~~EreRGITIka~~~~~~~~~~~~~~y~iNlIDTP 86 (606)
+++-|-++++||--.+|||||..+| |.+-.+ |-||- =.|++-+.-...|. ++. .+.+-|-|
T Consensus 192 ELKsiadvGLVG~PNAGKSTLL~al---s~AKpk------Va~Ya------FTTL~P~iG~v~yd--df~--q~tVADiP 252 (366)
T KOG1489 192 ELKSIADVGLVGFPNAGKSTLLNAL---SRAKPK------VAHYA------FTTLRPHIGTVNYD--DFS--QITVADIP 252 (366)
T ss_pred EEEEECCCCEECCCCCCHHHHHHHH---HCCCCC------CCCCC------EEEECCCCCEEECC--CCC--EEEECCCC
T ss_conf 8621055432128988678898776---405875------45542------03444641125135--451--46850476
Q ss_pred CCCH-------HHHHHHHHHHHCCEEEEEEECCCC---CCHHHHHHHHHHH---HCCC---CEEEEECCCCCCCCCCCCH
Q ss_conf 7300-------279999999730268999986878---8655899999999---7099---6799832678875321133
Q gi|254780321|r 87 GHVD-------FTYEVSRSLSACEGSLLVVDATQG---VEAQTLANVYQAI---DNNH---EIITVLNKADLPSADPDRV 150 (606)
Q Consensus 87 GH~D-------F~~EV~r~l~a~dgaiLvVdA~~G---vq~QT~~~~~~A~---~~~l---~~I~viNKiD~~~A~~e~v 150 (606)
|-.- -+++--|-+--|++-++|||...+ ---|+..-++.-+ +.+| +.++|.||||.|.|.-+.
T Consensus 253 GiI~GAh~nkGlG~~FLrHiER~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~eae~~~- 331 (366)
T KOG1489 253 GIIEGAHMNKGLGYKFLRHIERCKGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLPEAEKNL- 331 (366)
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHH-
T ss_conf 5344543467654899998875334899997787555887899999999999986542358538997446736678889-
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q ss_conf 88877555322321000111002232006787763
Q gi|254780321|r 151 KKQIEETIGISTEDALLVSAKTGEGIPLLLERIVQ 185 (606)
Q Consensus 151 ~~ei~~~~g~~~~~ii~vSAktG~GV~~LLd~Iv~ 185 (606)
..++...+ ....++++||++|+|+++|++.+-+
T Consensus 332 l~~L~~~l--q~~~V~pvsA~~~egl~~ll~~lr~ 364 (366)
T KOG1489 332 LSSLAKRL--QNPHVVPVSAKSGEGLEELLNGLRE 364 (366)
T ss_pred HHHHHHHC--CCCCEEEEEECCCCCHHHHHHHHHH
T ss_conf 99999873--7981787640046456889987763
No 248
>TIGR02528 EutP ethanolamine utilization protein, EutP; InterPro: IPR012381 Members of this family function in ethanolamine and propanediol degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose , . More than 10f the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect , . The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella , , . Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 biogenic amine metabolic process.
Probab=98.82 E-value=6e-09 Score=79.58 Aligned_cols=134 Identities=25% Similarity=0.370 Sum_probs=83.1
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCC-CCCCCCCCEEECCCHHHHHHCCEEEEEEEEEEEECCCCCEEEEEEEECCCCCHHH
Q ss_conf 999801389877889999998298-0544443113058677987195052327999974378843899996178730027
Q gi|254780321|r 14 FSIVAHIDHGKSTLADRFIQHCRG-LTEREMSSQVLDNMDIERERGITIKAQTVRLNYTSTDAKDYQLNLIDTPGHVDFT 92 (606)
Q Consensus 14 ~~IiaHvDhGKTTL~d~lL~~tg~-i~~~~~~~~vlD~~~~EreRGITIka~~~~~~~~~~~~~~y~iNlIDTPGH~DF~ 92 (606)
+.+||.+++|||||+-+| -|- +.-+ |.| ++.|..+ +.|||||--==.
T Consensus 3 ~~f~G~~gCGKTTL~q~L---~g~~~~YK--------------------KTQ--AvE~~~k-------~~IDTPGEY~en 50 (144)
T TIGR02528 3 IMFIGSVGCGKTTLTQAL---QGEEIKYK--------------------KTQ--AVEYKDK-------EAIDTPGEYVEN 50 (144)
T ss_pred EEEEECCCCCHHHHHHHC---CCCCCCEE--------------------EEE--EEEECCC-------CCCCCCCCCCCC
T ss_conf 788715888744354311---68732102--------------------334--4542588-------865598500157
Q ss_pred HHHHHHHH--HCCE--EEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCC--CCCCHHHHHHHHHHHHHHHHH
Q ss_conf 99999997--3026--89999868788655899999999709967998326788753--211338887755532232100
Q gi|254780321|r 93 YEVSRSLS--ACEG--SLLVVDATQGVEAQTLANVYQAIDNNHEIITVLNKADLPSA--DPDRVKKQIEETIGISTEDAL 166 (606)
Q Consensus 93 ~EV~r~l~--a~dg--aiLvVdA~~Gvq~QT~~~~~~A~~~~l~~I~viNKiD~~~A--~~e~v~~ei~~~~g~~~~~ii 166 (606)
-.-..||- +||. -+||-+|.++-+ +..--..+.-..-+.|-+|.|+|++.+ +.+++.+.+... -.++++
T Consensus 51 r~~Y~AL~vtaaDAd~i~lV~~a~~~~~--~f~PgF~~~f~kK~~IG~vTK~DLA~~d~~i~r~~~~L~~A---G~~~iF 125 (144)
T TIGR02528 51 RRYYSALIVTAADADVIALVQSATDEES--RFSPGFASIFVKKEVIGIVTKIDLAEADKDIERAKRLLETA---GAEKIF 125 (144)
T ss_pred CCHHHHHHHHHHCCEEEEEEECCCCCCC--CCCCCCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHC---CCCCCE
T ss_conf 5237888888721023667735776422--37850002367886347884037887734799999998723---654331
Q ss_pred HHHHHCCCCCCHHHHHHH
Q ss_conf 011100223200678776
Q gi|254780321|r 167 LVSAKTGEGIPLLLERIV 184 (606)
Q Consensus 167 ~vSAktG~GV~~LLd~Iv 184 (606)
.+|+....||++|++.+.
T Consensus 126 ~~~~~d~~G~~~l~~yL~ 143 (144)
T TIGR02528 126 EISSVDEKGIEELVDYLN 143 (144)
T ss_pred EECCCCCHHHHHHHHHHC
T ss_conf 650778045899999844
No 249
>PRK12298 obgE GTPase ObgE; Reviewed
Probab=98.77 E-value=3.2e-07 Score=68.01 Aligned_cols=156 Identities=22% Similarity=0.320 Sum_probs=90.5
Q ss_pred HHCEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHCCEEEEEEEEEEEECCCCCEEEEEEEECCCC
Q ss_conf 25317999801389877889999998298054444311305867798719505232799997437884389999617873
Q gi|254780321|r 9 SRIRNFSIVAHIDHGKSTLADRFIQHCRGLTEREMSSQVLDNMDIERERGITIKAQTVRLNYTSTDAKDYQLNLIDTPGH 88 (606)
Q Consensus 9 ~~IRN~~IiaHvDhGKTTL~d~lL~~tg~i~~~~~~~~vlD~~~~EreRGITIka~~~~~~~~~~~~~~y~iNlIDTPGH 88 (606)
+-|-.++++|--.+|||||.-++ |.+-.+ +-||-= -|+.-+-=.+.| .+.+ .+-+-|.||-
T Consensus 157 KliADVGLvG~PNAGKSTll~~i---S~AkPK------IAdYpF------TTL~PnLGvV~~--~~~~--~fviADIPGL 217 (380)
T PRK12298 157 KLLADVGLLGLPNAGKSTFIRAV---SAAKPK------VADYPF------TTLVPNLGVVRV--DDER--SFVIADIPGL 217 (380)
T ss_pred EEECCCCEEECCCCCCHHHHHHH---HCCCCC------CCCCCC------CCCCCEEEEEEE--CCCC--EEEEEECCCC
T ss_conf 97516514636988610899885---558975------478875------336874679994--6986--6999877755
Q ss_pred C-----------HHHHHHHHHHHHCCEEEEEEECCC--CCCHH----HHHH---HHHHHHCCCCEEEEECCCCCCCCC-C
Q ss_conf 0-----------027999999973026899998687--88655----8999---999997099679983267887532-1
Q gi|254780321|r 89 V-----------DFTYEVSRSLSACEGSLLVVDATQ--GVEAQ----TLAN---VYQAIDNNHEIITVLNKADLPSAD-P 147 (606)
Q Consensus 89 ~-----------DF~~EV~r~l~a~dgaiLvVdA~~--Gvq~Q----T~~~---~~~A~~~~l~~I~viNKiD~~~A~-~ 147 (606)
. .|---++| |..-+.|||++. +-.|. ++.+ .|-......|.|+|+||||++.++ .
T Consensus 218 IeGAs~G~GLG~~FLrHieR----t~~LlhviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~kp~iiv~NK~Dl~~~~e~ 293 (380)
T PRK12298 218 IEGAAEGAGLGIRFLKHLER----CRVLLHLIDIAPIDGSDPVENARIIVNELEKYSPKLAEKPRWLVFNKIDLLDEEEA 293 (380)
T ss_pred CCCCCCCCCHHHHHHHHHHH----HCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHCHHHCCCCEEEEEECCCCCCHHHH
T ss_conf 57755587728999999875----35899999688777519999999999999985976605987999988548997999
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q ss_conf 13388877555322321000111002232006787763210
Q gi|254780321|r 148 DRVKKQIEETIGISTEDALLVSAKTGEGIPLLLERIVQQLP 188 (606)
Q Consensus 148 e~v~~ei~~~~g~~~~~ii~vSAktG~GV~~LLd~Iv~~iP 188 (606)
....+++.+.++.+ ..++++||.||.|+++|+.+|.+++.
T Consensus 294 ~~~~~~~~~~~~~~-~~v~~ISA~tgeG~~~L~~~i~~~l~ 333 (380)
T PRK12298 294 EERAKEIVEALGWE-GPVYLISAASGEGTKELCWDLMTFIE 333 (380)
T ss_pred HHHHHHHHHHCCCC-CCEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 99999999970888-88799978768799999999999998
No 250
>cd03700 eEF2_snRNP_like_II EF2_snRNP_like_II: this subfamily represents domain II of elongation factor (EF) EF-2 found eukaryotes and archaea and, the C-terminal portion of the spliceosomal human 116kD U5 small nuclear ribonucleoprotein (snRNP) protein (U5-116 kD) and, its yeast counterpart Snu114p. During the process of peptide synthesis and tRNA site changes, the ribosome is moved along the mRNA a distance equal to one codon with the addition of each amino acid. This translocation step is catalyzed by EF-2_GTP, which is hydrolyzed to provide the required energy. Thus, this action releases the uncharged tRNA from the P site and transfers the newly formed peptidyl-tRNA from the A site to the P site. Yeast Snu114p is essential for cell viability and for splicing in vivo. U5-116 kD binds GTP. Experiments suggest that GTP binding and probably GTP hydrolysis is important for the function of the U5-116 kD/Snu114p.
Probab=98.76 E-value=9.3e-09 Score=78.26 Aligned_cols=79 Identities=22% Similarity=0.373 Sum_probs=60.8
Q ss_pred CCCCCEEECC-CCCEEEEEEECCCCCCCCCEEEEECCC---------CCCCCCCCCCC-CCCEEEEHHCCCCCHHHHHHC
Q ss_conf 1012101147-572599998169873558458873355---------64210122233-554124010124712332201
Q gi|254780321|r 202 ALLIDSWYNS-YLGVMVLVRIINGQLTKGQSIRLMGTN---------AKYQVERIGIL-TPKMIDIEALYPGEIGVMIAS 270 (606)
Q Consensus 202 alVfds~~D~-~~G~I~~~RV~sG~lk~Gd~I~~~~~g---------~~~~v~~ig~~-~~~~~~v~~l~aGdVG~ii~g 270 (606)
+++.+.+-++ .-+-++++|||||+|++||+|++++.+ .+.++.++++| +.++.+++++.||+| ++
T Consensus 3 ~~v~k~~~~~d~~~fia~gRV~SGtl~~G~~V~vlgp~y~~~~~~~~~~~~I~~l~~~~G~~~~~v~~~~AGnI----v~ 78 (93)
T cd03700 3 MYVTKMVPTPDKGGFIAFGRVFSGTIRKGQKVRVLGPNYSPEDEEDLSKKTIQRLYLMMGRYREPVDEVPAGNI----VL 78 (93)
T ss_pred EEEEEEEECCCCCEEEEEEEEEECEEECCCEEEEECCCCCCCCCCEEEEEEEEEEEEEECCCEEECCEECCCCE----EE
T ss_conf 99997165699978999999986668089999997887888877613388986999995688999098889999----99
Q ss_pred CCCCCCCCCCCEEC
Q ss_conf 10024444542000
Q gi|254780321|r 271 IKEVSHTRVGDTIT 284 (606)
Q Consensus 271 ik~l~~~~vGDTl~ 284 (606)
+.+++++++|+|.+
T Consensus 79 i~Gld~~~~g~~~t 92 (93)
T cd03700 79 IVGLDQLKSGTTAT 92 (93)
T ss_pred EECCCCCEEEEEEE
T ss_conf 97765443775983
No 251
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=98.75 E-value=8.1e-07 Score=65.26 Aligned_cols=156 Identities=18% Similarity=0.254 Sum_probs=95.7
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHCCEEEEEEEEEEEE--CCCCCEEEEEEEECCCCCHH
Q ss_conf 9998013898778899999982980544443113058677987195052327999974--37884389999617873002
Q gi|254780321|r 14 FSIVAHIDHGKSTLADRFIQHCRGLTEREMSSQVLDNMDIERERGITIKAQTVRLNYT--STDAKDYQLNLIDTPGHVDF 91 (606)
Q Consensus 14 ~~IiaHvDhGKTTL~d~lL~~tg~i~~~~~~~~vlD~~~~EreRGITIka~~~~~~~~--~~~~~~y~iNlIDTPGH~DF 91 (606)
+.++|..+-|||+|+.++. .+.+..+. ..++ |.++..+. ..|. ..+.+.+.+.|.||.|...|
T Consensus 3 IlllGDsgVGKTSL~~~~~--~~~f~~~~-~~Ti----------G~~v~~k~--~~~~~~~~~~k~~~l~lWDtaGqery 67 (202)
T cd04102 3 VLVVGDSGVGKSSLVHLIC--KNQVLGRP-SWTV----------GCSVDVKH--HTYKEGTPEEKTFFVELWDVGGSESV 67 (202)
T ss_pred EEEECCCCCCHHHHHHHHH--CCCCCCCC-CCCE----------EEEEEEEE--EEECCCCCCCCEEEEEEEECCCCHHH
T ss_conf 9999999989999999998--39888888-8850----------36789999--99337876783899999989987757
Q ss_pred HHHHHHHHHHCCEEEEEEECCCCCCHHHHHHH--HHHH------------------------HCCCCEEEEECCCCCCCC
Q ss_conf 79999999730268999986878865589999--9999------------------------709967998326788753
Q gi|254780321|r 92 TYEVSRSLSACEGSLLVVDATQGVEAQTLANV--YQAI------------------------DNNHEIITVLNKADLPSA 145 (606)
Q Consensus 92 ~~EV~r~l~a~dgaiLvVdA~~Gvq~QT~~~~--~~A~------------------------~~~l~~I~viNKiD~~~A 145 (606)
..-...-.+-++|+|||-|-+. .+|-.++ |+.. ...+|+++|=||.|+..-
T Consensus 68 ~sl~~~yYr~a~gvILVyDvTn---r~SF~nL~~Wl~Eil~~~~~~~~~~~~~~~~~~~~~~~~~vPilvVGtK~D~~~~ 144 (202)
T cd04102 68 KSTRAVFYNQVNGIILVHDLTN---RKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPE 144 (202)
T ss_pred HHHHHHHHCCCCEEEEEEECCC---HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECHHHCCC
T ss_conf 7678997588989999998949---8999869999999975367666545566655533346789758999760652434
Q ss_pred CC------C----CHHHH--HHHH-HHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q ss_conf 21------1----33888--7755-532232100011100223200678776321
Q gi|254780321|r 146 DP------D----RVKKQ--IEET-IGISTEDALLVSAKTGEGIPLLLERIVQQL 187 (606)
Q Consensus 146 ~~------e----~v~~e--i~~~-~g~~~~~ii~vSAktG~GV~~LLd~Iv~~i 187 (606)
+. + .+.+| .+++ +++-...-+.+|++++.++...||.+|++.
T Consensus 145 r~~~~~~~~~~~~~ia~q~~~eei~~~c~~~~~~~~~~~~~~kl~~ff~~vie~~ 199 (202)
T cd04102 145 KESSGNLVLTARGFVAEQGNAEEINLNCTNGRLLAAGSSDAVKLSRFFDKVIEKR 199 (202)
T ss_pred CCCCCCHHHHHHHHHHHHCCHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 3555423555302577751667888745684400346755168999999998888
No 252
>PRK12296 obgE GTPase ObgE; Reviewed
Probab=98.74 E-value=3.1e-07 Score=68.10 Aligned_cols=159 Identities=22% Similarity=0.302 Sum_probs=91.8
Q ss_pred HHHCEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHCCEEEEEEEEEEEECCCCCEEEEEEEECCC
Q ss_conf 52531799980138987788999999829805444431130586779871950523279999743788438999961787
Q gi|254780321|r 8 LSRIRNFSIVAHIDHGKSTLADRFIQHCRGLTEREMSSQVLDNMDIERERGITIKAQTVRLNYTSTDAKDYQLNLIDTPG 87 (606)
Q Consensus 8 ~~~IRN~~IiaHvDhGKTTL~d~lL~~tg~i~~~~~~~~vlD~~~~EreRGITIka~~~~~~~~~~~~~~y~iNlIDTPG 87 (606)
++-|-.+++||--.+|||||.-++ |.+-.+ .. ||-= -|+.- .+..... .+..+.+.|-||
T Consensus 156 LK~iADVGLvG~PNaGKSTLl~~i---S~Akpk--IA----~YpF------TTL~P---nLGvv~~--~d~~f~iADiPG 215 (495)
T PRK12296 156 LKSVADVGLVGFPSAGKSSLISAI---SAAKPK--IA----DYPF------TTLVP---NLGVVSA--GDHTFTVADVPG 215 (495)
T ss_pred EEEEECCCEECCCCCCHHHHHHHH---HCCCCC--CC----CCCC------CCCCC---EEEEEEC--CCCEEEEEECCC
T ss_conf 998613110118999615899887---548876--57----8775------54575---4678970--795289985664
Q ss_pred CCH-------HHHHHHHHHHHCCEEEEEEECCC---CCCH----HHHHHHHHHH-------------HCCCCEEEEECCC
Q ss_conf 300-------27999999973026899998687---8865----5899999999-------------7099679983267
Q gi|254780321|r 88 HVD-------FTYEVSRSLSACEGSLLVVDATQ---GVEA----QTLANVYQAI-------------DNNHEIITVLNKA 140 (606)
Q Consensus 88 H~D-------F~~EV~r~l~a~dgaiLvVdA~~---Gvq~----QT~~~~~~A~-------------~~~l~~I~viNKi 140 (606)
-.. -+.+--|-+.=|---+.|||+.. |--| .|+.. .++. ...-|.|+|+|||
T Consensus 216 LIeGAs~g~GLG~~FLRHieR~~vL~hviD~~~~e~~rDP~~d~~~I~~-EL~~Y~~~l~~~~~~~~L~erpqIVvlNKi 294 (495)
T PRK12296 216 LIPGASEGRGLGLDFLRHIERCAVLVHVVDCATLEPGRDPISDIDALEA-ELAAYTPTLQGDAGLGDLAERPRLVVLNKI 294 (495)
T ss_pred CCCCCCCCCCCHHHHHHHHHHCCEEEEEEECCCCCCCCCHHHHHHHHHH-HHHHCCHHHHCCCCCCCCCCCCEEEEEECC
T ss_conf 3465003898439999987525479999968876667896999999999-999719143044332321019659999665
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHC
Q ss_conf 8875321133888775553223210001110022320067877632100
Q gi|254780321|r 141 DLPSADPDRVKKQIEETIGISTEDALLVSAKTGEGIPLLLERIVQQLPS 189 (606)
Q Consensus 141 D~~~A~~e~v~~ei~~~~g~~~~~ii~vSAktG~GV~~LLd~Iv~~iP~ 189 (606)
|+|.|+ ...+.+.+.+.-....++++||.++.|+++|+.++.+.++.
T Consensus 295 Dlp~a~--e~~e~~~~~l~~~g~~Vf~ISA~t~eGl~eL~~~l~elv~~ 341 (495)
T PRK12296 295 DVPDAR--ELAEFVRPELEERGWPVFEVSTVTREGLRPLSFALAELVSA 341 (495)
T ss_pred CCCCHH--HHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 675769--99999999998749957998641003899999999999985
No 253
>PRK12297 obgE GTPase ObgE; Reviewed
Probab=98.73 E-value=4.4e-07 Score=67.04 Aligned_cols=160 Identities=22% Similarity=0.301 Sum_probs=93.5
Q ss_pred HHHCEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHCCEEEEEEEEEEEECCCCCEEEEEEEECCC
Q ss_conf 52531799980138987788999999829805444431130586779871950523279999743788438999961787
Q gi|254780321|r 8 LSRIRNFSIVAHIDHGKSTLADRFIQHCRGLTEREMSSQVLDNMDIERERGITIKAQTVRLNYTSTDAKDYQLNLIDTPG 87 (606)
Q Consensus 8 ~~~IRN~~IiaHvDhGKTTL~d~lL~~tg~i~~~~~~~~vlD~~~~EreRGITIka~~~~~~~~~~~~~~y~iNlIDTPG 87 (606)
++-|-.+++||--.+|||||.-++ |.+-.+ .. ||-= -|+.-+--.+.| .+ ++.+-+.|-||
T Consensus 155 LkliADVGLvG~PNaGKSTll~~i---s~A~pk--Ia----~YpF------TTl~P~lGvv~~--~~--~~~~~iADiPG 215 (429)
T PRK12297 155 LKLLADVGLVGFPNVGKSTLLSVV---SNAKPK--IA----NYHF------TTLVPNLGVVET--DD--GRSFVMADLPG 215 (429)
T ss_pred EEEECCCCEEECCCCCHHHHHHHH---HCCCCC--CC----CCCC------CCCCCEEEEEEE--CC--CCEEEEEECCC
T ss_conf 995327633647998457899887---548975--57----8774------025766668985--69--86699962674
Q ss_pred CCH-------HHHHHHHHHHHCCEEEEEEECC--CCCCH----HHHHH---HHHHHHCCCCEEEEECCCCCCCCCCCCHH
Q ss_conf 300-------2799999997302689999868--78865----58999---99999709967998326788753211338
Q gi|254780321|r 88 HVD-------FTYEVSRSLSACEGSLLVVDAT--QGVEA----QTLAN---VYQAIDNNHEIITVLNKADLPSADPDRVK 151 (606)
Q Consensus 88 H~D-------F~~EV~r~l~a~dgaiLvVdA~--~Gvq~----QT~~~---~~~A~~~~l~~I~viNKiD~~~A~~e~v~ 151 (606)
-.. -+.+--|-+.-|..-+.|||++ ++-.| +++.. .|-......|.|+|+||||+|.++ ...
T Consensus 216 LIeGA~~g~GLG~~FLrHieR~~~L~hviD~s~~~~~dp~~d~~~i~~EL~~y~~~L~~kp~ivv~NK~Dl~~~~--~~~ 293 (429)
T PRK12297 216 LIEGASEGVGLGHQFLRHIERTRVIVHVIDMSGSEGRDPIEDYETINKELKKYNLRLLERPQIIVANKMDLPEAE--ENL 293 (429)
T ss_pred CCCCCCCCCCCCHHHHHHHHHCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHCHHHHCCCEEEEEECCCCCCHH--HHH
T ss_conf 567744688866888887662467999997878777798999999999999868987269669999764585769--999
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHC
Q ss_conf 88775553223210001110022320067877632100
Q gi|254780321|r 152 KQIEETIGISTEDALLVSAKTGEGIPLLLERIVQQLPS 189 (606)
Q Consensus 152 ~ei~~~~g~~~~~ii~vSAktG~GV~~LLd~Iv~~iP~ 189 (606)
+.+.+.+. +..+++++||.||.|+++|++.+.+.+..
T Consensus 294 ~~~~~~~~-~~~~i~~iSa~t~egl~~l~~~i~~~l~~ 330 (429)
T PRK12297 294 EEFKEKLA-KGKKVFPISALTKQGLDELLYAIAELLEK 330 (429)
T ss_pred HHHHHHHH-CCCCEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 99999753-46978999684451999999999999985
No 254
>KOG0078 consensus
Probab=98.71 E-value=1.6e-06 Score=63.25 Aligned_cols=164 Identities=26% Similarity=0.326 Sum_probs=106.6
Q ss_pred CCCCCCCHHHCEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHCCEEEEEEEEEEEECCCCCEEEE
Q ss_conf 98889985253179998013898778899999982980544443113058677987195052327999974378843899
Q gi|254780321|r 1 MQKKPTPLSRIRNFSIVAHIDHGKSTLADRFIQHCRGLTEREMSSQVLDNMDIERERGITIKAQTVRLNYTSTDAKDYQL 80 (606)
Q Consensus 1 ~~~~~~p~~~IRN~~IiaHvDhGKTTL~d~lL~~tg~i~~~~~~~~vlD~~~~EreRGITIka~~~~~~~~~~~~~~y~i 80 (606)
|+++++ +.+=-+.+||-.+.|||.+..|+...+- ... ...++ ||--|..++.+ +++..++
T Consensus 4 ~~~~~~--d~~~kvlliGDs~vGKt~~l~rf~d~~f--~~~-~~sTi----------GIDFk~kti~l-----~g~~i~l 63 (207)
T KOG0078 4 MAKEDY--DYLFKLLLIGDSGVGKTCLLLRFSDDSF--NTS-FISTI----------GIDFKIKTIEL-----DGKKIKL 63 (207)
T ss_pred CCCCCC--CEEEEEEEECCCCCCHHHHHHHHHHCCC--CCC-CCCEE----------EEEEEEEEEEE-----CCEEEEE
T ss_conf 445784--5189999977898765576665440667--677-65158----------78878889983-----8908999
Q ss_pred EEEECCCCCHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHC----CCCEEEEECCCCCCCCCCCCHH----H
Q ss_conf 9961787300279999999730268999986878865589999999970----9967998326788753211338----8
Q gi|254780321|r 81 NLIDTPGHVDFTYEVSRSLSACEGSLLVVDATQGVEAQTLANVYQAIDN----NHEIITVLNKADLPSADPDRVK----K 152 (606)
Q Consensus 81 NlIDTPGH~DF~~EV~r~l~a~dgaiLvVdA~~Gvq~QT~~~~~~A~~~----~l~~I~viNKiD~~~A~~e~v~----~ 152 (606)
-+.||-|..-|.--.....+-++|++||+|-+.-.--.-...|..-.+. +.++|+|=||+|+...+ .|. +
T Consensus 64 QiWDtaGQerf~ti~~sYyrgA~gi~LvyDitne~Sfeni~~W~~~I~e~a~~~v~~~LvGNK~D~~~~R--~V~~e~ge 141 (207)
T KOG0078 64 QIWDTAGQERFRTITTAYYRGAMGILLVYDITNEKSFENIRNWIKNIDEHASDDVVKILVGNKCDLEEKR--QVSKERGE 141 (207)
T ss_pred EEEECCCCHHHHHHHHHHHHHCCEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCC--CCCHHHHH
T ss_conf 9997243056788999998654824999984525777779999999986378887489851141210133--35679999
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHC
Q ss_conf 8775553223210001110022320067877632100
Q gi|254780321|r 153 QIEETIGISTEDALLVSAKTGEGIPLLLERIVQQLPS 189 (606)
Q Consensus 153 ei~~~~g~~~~~ii~vSAktG~GV~~LLd~Iv~~iP~ 189 (606)
.+..-+|+ ....+|||+|.||++.+-.+...+-.
T Consensus 142 ~lA~e~G~---~F~EtSAk~~~NI~eaF~~La~~i~~ 175 (207)
T KOG0078 142 ALAREYGI---KFFETSAKTNFNIEEAFLSLARDILQ 175 (207)
T ss_pred HHHHHHCC---EEEECCCCCCCCHHHHHHHHHHHHHH
T ss_conf 99998498---27971336799889999999999986
No 255
>TIGR00450 thdF tRNA modification GTPase TrmE; InterPro: IPR004520 The GTP-binding domain of all TrmE/ThdF orthologues is found in the C-terminal portion of the molecule. The N-terminal half can be removed without affecting the GTP-binding/hydrolysis function of the GTP-binding domain. The last four amino acids of all orthologues of ThdF/TrmE are highly conserved, being either CIGK or CLGK. This matches the Caax (where 'a' represents an aliphatic amino acid, and 'x' represents any amino acid) motif for isoprenylation that anchors small GTP-binding proteins to cell membranes in eukaryotic cells. However, protein isoprenylation has never been shown to occur in bacteria. Interestingly, biochemical experiments have shown that the Escherichia coli TrmE protein peripherally associates with the membrane fraction . Although the biochemical properties of TrmE have been investigated for the E. coli and Thermotoga maritima proteins, nothing is known about the relationship of this protein to tRNA modification. Orthologues of TrmE are present in eukaryotes and bacteria, but are not present in archaea. In Saccharomyces cerevisiae, Mss1p is a nuclear-encoded mitochondrial protein that is the yeast orthologue of TrmE. Mss1p interacts with the 15S rRNA of the yeast mitochondria, which is equivalent to the 16S rRNA of bacteria. Subsequent analysis of the S. cerevisiae MTO1 gene suggests that MSS1 and MTO1 act together in a pathway involved in optimizing mitochondrial protein synthesis. TrmE may play a role in tRNA processing and may be directly or indirectly involved in regulating ribosome function.; GO: 0003924 GTPase activity, 0005525 GTP binding, 0006400 tRNA modification, 0005622 intracellular.
Probab=98.70 E-value=4.4e-07 Score=67.05 Aligned_cols=111 Identities=23% Similarity=0.411 Sum_probs=71.7
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCC-CCCCEEECCCHHHHHHCCEEEEEEEEEEEECCCCCEEEEEEEECCC---C
Q ss_conf 79998013898778899999982980544-4431130586779871950523279999743788438999961787---3
Q gi|254780321|r 13 NFSIVAHIDHGKSTLADRFIQHCRGLTER-EMSSQVLDNMDIERERGITIKAQTVRLNYTSTDAKDYQLNLIDTPG---H 88 (606)
Q Consensus 13 N~~IiaHvDhGKTTL~d~lL~~tg~i~~~-~~~~~vlD~~~~EreRGITIka~~~~~~~~~~~~~~y~iNlIDTPG---H 88 (606)
-++|||.+..|||+|.-+||..-.+|-.. .+..| |. |-+ .+.. +.|.++++||-| |
T Consensus 227 k~ai~G~~NvGKSSLLNa~l~~DrAiVS~~kGtTR--D~----------vE~---~~~L-----~G~~~~~lDTAGiR~~ 286 (473)
T TIGR00450 227 KLAIVGKPNVGKSSLLNALLKQDRAIVSDIKGTTR--DV----------VEG---DFEL-----NGILVKLLDTAGIREH 286 (473)
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCEEEECCCCCCC--CE----------EEE---EEEE-----CCEEEEEEECCCCCCC
T ss_conf 79996478875789999876228705527668832--04----------420---5777-----4678998514675102
Q ss_pred CHHH--HHHHHHHH---HCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCC
Q ss_conf 0027--99999997---3026899998687886558999999997099679983267887
Q gi|254780321|r 89 VDFT--YEVSRSLS---ACEGSLLVVDATQGVEAQTLANVYQAIDNNHEIITVLNKADLP 143 (606)
Q Consensus 89 ~DF~--~EV~r~l~---a~dgaiLvVdA~~Gvq~QT~~~~~~A~~~~l~~I~viNKiD~~ 143 (606)
.|+. --+++|.. -||-+|.|+||.++....-..-+-.....+-++++|+||+|+.
T Consensus 287 ~~~~E~~GiekS~~~i~~A~LVi~~~D~~~~~~~ddf~li~~~~k~~k~~~~V~NK~DL~ 346 (473)
T TIGR00450 287 ADKVERLGIEKSFKAIKQADLVIYVLDASQPLTKDDFELIITLNKKKKPLILVLNKIDLA 346 (473)
T ss_pred HHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCC
T ss_conf 004667768998999860573478887478988105899999732179779997350165
No 256
>KOG0080 consensus
Probab=98.68 E-value=2.5e-07 Score=68.71 Aligned_cols=154 Identities=25% Similarity=0.331 Sum_probs=96.3
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHCCEEEEEEEEEEEECCCCCEEEEEEEECCCCCHH
Q ss_conf 17999801389877889999998298054444311305867798719505232799997437884389999617873002
Q gi|254780321|r 12 RNFSIVAHIDHGKSTLADRFIQHCRGLTEREMSSQVLDNMDIERERGITIKAQTVRLNYTSTDAKDYQLNLIDTPGHVDF 91 (606)
Q Consensus 12 RN~~IiaHvDhGKTTL~d~lL~~tg~i~~~~~~~~vlD~~~~EreRGITIka~~~~~~~~~~~~~~y~iNlIDTPGH~DF 91 (606)
--+-|||..+-|||+|.=|+. ..+++..... ++ |.-.|. .+...+|+++++.|.||-|..-|
T Consensus 12 ~KiLlIGeSGVGKSSLllrFv--~~~fd~~~~~-tI----------GvDFkv-----k~m~vdg~~~KlaiWDTAGqErF 73 (209)
T KOG0080 12 FKILLIGESGVGKSSLLLRFV--SNTFDDLHPT-TI----------GVDFKV-----KVMQVDGKRLKLAIWDTAGQERF 73 (209)
T ss_pred EEEEEECCCCCCHHHHHHHHH--HCCCCCCCCC-EE----------EEEEEE-----EEEEECCCEEEEEEEECCCHHHH
T ss_conf 799998168765789999987--6436766773-44----------345788-----99987582678998743452766
Q ss_pred HHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHH-----CCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHH--
Q ss_conf 7999999973026899998687886558999999997-----099679983267887532113388877555322321--
Q gi|254780321|r 92 TYEVSRSLSACEGSLLVVDATQGVEAQTLANVYQAID-----NNHEIITVLNKADLPSADPDRVKKQIEETIGISTED-- 164 (606)
Q Consensus 92 ~~EV~r~l~a~dgaiLvVdA~~Gvq~QT~~~~~~A~~-----~~l~~I~viNKiD~~~A~~e~v~~ei~~~~g~~~~~-- 164 (606)
-.-...-.+-+.|+|||-|-+.------..+|..-++ .++-.++|=||||+++ +++..- +|-+.+...-
T Consensus 74 RtLTpSyyRgaqGiIlVYDVT~Rdtf~kLd~W~~Eld~Ystn~diikmlVgNKiDkes---~R~V~r-eEG~kfAr~h~~ 149 (209)
T KOG0080 74 RTLTPSYYRGAQGIILVYDVTSRDTFVKLDIWLKELDLYSTNPDIIKMLVGNKIDKES---ERVVDR-EEGLKFARKHRC 149 (209)
T ss_pred HCCCHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCCCCHH---CCCCCH-HHHHHHHHHHCC
T ss_conf 1168767455750699997122356775999999887644881376765425445012---021348-887899986082
Q ss_pred -HHHHHHHCCCCCCHHHHHHHHHH
Q ss_conf -00011100223200678776321
Q gi|254780321|r 165 -ALLVSAKTGEGIPLLLERIVQQL 187 (606)
Q Consensus 165 -ii~vSAktG~GV~~LLd~Iv~~i 187 (606)
.+.+|||+-.||+..++.+++.|
T Consensus 150 LFiE~SAkt~~~V~~~FeelveKI 173 (209)
T KOG0080 150 LFIECSAKTRENVQCCFEELVEKI 173 (209)
T ss_pred EEEECCHHHHCCHHHHHHHHHHHH
T ss_conf 789825434301888999999998
No 257
>cd04089 eRF3_II eRF3_II: domain II of the eukaryotic class II release factor (eRF3). In eukaryotes, translation termination is mediated by two interacting release factors, eRF1 and eRF3, which act as class I and II factors, respectively. eRF1 functions as an omnipotent release factor, decoding all three stop codons and triggering the release of the nascent peptide catalyzed by the ribsome. eRF3 is a GTPase, which enhances the termination efficiency by stimulating the eRF1 activity in a GTP-dependent manner. Sequence comparison of class II release factors with elongation factors shows that eRF3 is more similar to eEF1alpha whereas prokaryote RF3 is more similar to EF-G, implying that their precise function may differ. Only eukaryote RF3s are found in this group. Saccharomyces cerevisiae eRF3 (Sup35p) is a translation termination factor which is divided into three regions N, M and a C-terminal eEF1a-like region essential for translation termination. Sup35NM is a non-pathogenic prion-li
Probab=98.65 E-value=2.2e-08 Score=75.78 Aligned_cols=81 Identities=23% Similarity=0.427 Sum_probs=68.0
Q ss_pred CCCCCCCCEEECCCCCEEEEEEECCCCCCCCCEEEEECCCCCCCCCCCCCCCCCEEEEHHCCCCC-HHHHHHCCCCCCCC
Q ss_conf 23310121011475725999981698735584588733556421012223355412401012471-23322011002444
Q gi|254780321|r 199 PLKALLIDSWYNSYLGVMVLVRIINGQLTKGQSIRLMGTNAKYQVERIGILTPKMIDIEALYPGE-IGVMIASIKEVSHT 277 (606)
Q Consensus 199 Pl~alVfds~~D~~~G~I~~~RV~sG~lk~Gd~I~~~~~g~~~~v~~ig~~~~~~~~v~~l~aGd-VG~ii~gik~l~~~ 277 (606)
|||+.|-|.+ ...|.+.+|||.+|+++.||+|.+++++...++..+.. +..+++++.||| |+.-+.|+ +..++
T Consensus 1 PlR~pi~dv~--kg~G~vV~G~vesG~v~~Gd~v~i~P~~~~~~Vk~I~~---~~~~v~~A~aGd~V~l~L~gv-d~~~i 74 (82)
T cd04089 1 PLRLPIIDKY--KDMGTVVLGKVESGTIKKGDKLLVMPNKTQVEVLSIYN---EDVEVRYARPGENVRLRLKGI-EEEDI 74 (82)
T ss_pred CEEEEEEEEE--ECCCEEEEEEEEEEEECCCCEEEEECCCCEEEEEEEEE---CCEEECEECCCCCEEEEECCC-CHHHC
T ss_conf 9782687899--28988999999367782999999958998899999999---997958886997326888488-88844
Q ss_pred CCCCEECC
Q ss_conf 45420004
Q gi|254780321|r 278 RVGDTITD 285 (606)
Q Consensus 278 ~vGDTl~~ 285 (606)
+.||-||+
T Consensus 75 ~rG~vlcs 82 (82)
T cd04089 75 SPGFVLCS 82 (82)
T ss_pred CCCCEECC
T ss_conf 78879959
No 258
>pfam08477 Miro Miro-like protein. Mitochondrial Rho proteins (Miro-1 and Miro-2), are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (pfam00036), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis.
Probab=98.65 E-value=1.1e-06 Score=64.46 Aligned_cols=111 Identities=19% Similarity=0.244 Sum_probs=74.4
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHCCEEEEEEEEEEEECCCCCEEEEEEEECCCCCHHHH
Q ss_conf 99980138987788999999829805444431130586779871950523279999743788438999961787300279
Q gi|254780321|r 14 FSIVAHIDHGKSTLADRFIQHCRGLTEREMSSQVLDNMDIERERGITIKAQTVRLNYTSTDAKDYQLNLIDTPGHVDFTY 93 (606)
Q Consensus 14 ~~IiaHvDhGKTTL~d~lL~~tg~i~~~~~~~~vlD~~~~EreRGITIka~~~~~~~~~~~~~~y~iNlIDTPGH~DF~~ 93 (606)
+.++|--+.|||||..|++ .+.+...... ...+.++ .......+++.+.+++.||+|+..|..
T Consensus 2 ivvvG~~~vGKTSLi~r~~--~~~f~~~~~~----------~~~~~~~-----~~~~~~~~~~~~~l~i~Dt~g~~~~~~ 64 (118)
T pfam08477 2 VVVIGDKGSGKSSLLSQLV--GGEFPPEIPE----------EIQGDTL-----AVDTLEVDGDTELLHIWDFGGREELKF 64 (118)
T ss_pred EEEECCCCCCHHHHHHHHH--HCCCCCCCCC----------CCCCCEE-----EEEEEEECCCEEEEEEEECCCCHHHHH
T ss_conf 9999989978999999998--3988876667----------8777768-----889999999289999998999677766
Q ss_pred HHHHHHHHCCEEEEEEECCCCCCHHHHHHH---HHH-H--HCCCCEEEEECCCC
Q ss_conf 999999730268999986878865589999---999-9--70996799832678
Q gi|254780321|r 94 EVSRSLSACEGSLLVVDATQGVEAQTLANV---YQA-I--DNNHEIITVLNKAD 141 (606)
Q Consensus 94 EV~r~l~a~dgaiLvVdA~~Gvq~QT~~~~---~~A-~--~~~l~~I~viNKiD 141 (606)
...+.++-+|++|||.|.++----+....| ... . ..++|+|+|=||.|
T Consensus 65 ~~~~~~~~~d~~ilvydit~~~Sf~~~~~~~~~i~~~~~~~~~~piilVGnK~D 118 (118)
T pfam08477 65 EHIIFMKTADAILLVYDLTDRESLNRVSRLIAWLPHLRKLGKKIPVILVGNKFD 118 (118)
T ss_pred HHHHHCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCC
T ss_conf 665422587467899979987899999999999999982099998899996859
No 259
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=98.64 E-value=9e-07 Score=64.94 Aligned_cols=156 Identities=22% Similarity=0.271 Sum_probs=88.2
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCC-CCCCCCCC----CEE--ECCCHHHHHHCCEEEEEEEEEEEECCCCCEEEEEEEEC
Q ss_conf 799980138987788999999829-80544443----113--05867798719505232799997437884389999617
Q gi|254780321|r 13 NFSIVAHIDHGKSTLADRFIQHCR-GLTEREMS----SQV--LDNMDIERERGITIKAQTVRLNYTSTDAKDYQLNLIDT 85 (606)
Q Consensus 13 N~~IiaHvDhGKTTL~d~lL~~tg-~i~~~~~~----~~v--lD~~~~EreRGITIka~~~~~~~~~~~~~~y~iNlIDT 85 (606)
-+.++|-.+-|||+|.=+.. ++ ...+.... .++ .|. .++........+...+++.+.++|.||
T Consensus 4 KiVlvGDs~VGKTsLl~~~~--~n~~~~~~~~~~~~~pTv~~~~~--------~~~~~~~~~~~~~~vdg~~v~L~iWDT 73 (195)
T cd01873 4 KCVVVGDNAVGKTRLICARA--CNKTLTQYQLLATHVPTVWAIDQ--------YRVCQEVLERSRDVVDGVSVSLRLWDT 73 (195)
T ss_pred EEEEECCCCCCHHHHHHHHH--HCCCCCCCCCCCCCCCCCCCCCC--------CEEEEEECCCCEEEECCEEEEEEEEEC
T ss_conf 99998789989899997787--47876556566675886633333--------134444302211421895999999978
Q ss_pred CCCCHHHHHHHHH--HHHCCEEEEEEECCCCCCHHHHHH-HHHHHH---CCCCEEEEECCCCCCCCCCCCHH--------
Q ss_conf 8730027999999--973026899998687886558999-999997---09967998326788753211338--------
Q gi|254780321|r 86 PGHVDFTYEVSRS--LSACEGSLLVVDATQGVEAQTLAN-VYQAID---NNHEIITVLNKADLPSADPDRVK-------- 151 (606)
Q Consensus 86 PGH~DF~~EV~r~--l~a~dgaiLvVdA~~Gvq~QT~~~-~~~A~~---~~l~~I~viNKiD~~~A~~e~v~-------- 151 (606)
.|..++ .|. .+-+|+++|+.|-++---=+.... |..-+. .+.|+|+|=||+|+-..+.+...
T Consensus 74 AG~~~~----~r~~~y~~~~~~ll~fdv~~~~Sf~~v~~~W~~ei~~~~~~~piiLVG~K~DLr~~~~~~~~~~~~~~~~ 149 (195)
T cd01873 74 FGDHDK----DRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFCPRVPVILVGCKLDLRYADLDEVNRARRPLAR 149 (195)
T ss_pred CCCHHH----CCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECHHHCCCCCHHHHHHHHCCCC
T ss_conf 996200----1214356888999999669801489999999999998689998899963757544630245554300136
Q ss_pred ----------HH---HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q ss_conf ----------88---77555322321000111002232006787763
Q gi|254780321|r 152 ----------KQ---IEETIGISTEDALLVSAKTGEGIPLLLERIVQ 185 (606)
Q Consensus 152 ----------~e---i~~~~g~~~~~ii~vSAktG~GV~~LLd~Iv~ 185 (606)
+| +..-+|+ .-+-|||++|.||+++++..+.
T Consensus 150 ~~~~~~~v~~ee~~~~A~~~g~---~y~EtSAkt~~gV~e~F~~air 193 (195)
T cd01873 150 PIKNADILPPETGRAVAKELGI---PYYETSVVTQFGVKDVFDNAIR 193 (195)
T ss_pred CCCCCCCCCHHHHHHHHHHHCC---EEEECCCCCCCCHHHHHHHHHH
T ss_conf 5543576789999999998299---8998284879897999999998
No 260
>cd03698 eRF3_II_like eRF3_II_like: domain similar to domain II of the eukaryotic class II release factor (eRF3). In eukaryotes, translation termination is mediated by two interacting release factors, eRF1 and eRF3, which act as class I and II factors, respectively. eRF1 functions as an omnipotent release factor, decoding all three stop codons and triggering the release of the nascent peptide catalyzed by the ribsome. eRF3 is a GTPase, which enhances the termination efficiency by stimulating the eRF1 activity in a GTP-dependent manner. Sequence comparison of class II release factors with elongation factors shows that eRF3 is more similar to eEF1alpha whereas prokaryote RF3 is more similar to EF-G, implying that their precise function may differ. Only eukaryote RF3s are found in this group. Saccharomyces cerevisiae eRF3 (Sup35p) is a translation termination factor which is divided into three regions N, M and a C-terminal eEF1a-like region essential for translation termination. Sup35NM
Probab=98.61 E-value=3.3e-08 Score=74.56 Aligned_cols=82 Identities=18% Similarity=0.384 Sum_probs=67.4
Q ss_pred CCCCCCCCEEECCCCCEEEEEEECCCCCCCCCEEEEECCCCCCCCCCCCCCCCCEEEEHHCCCCC-HHHHHHCCCCCCCC
Q ss_conf 23310121011475725999981698735584588733556421012223355412401012471-23322011002444
Q gi|254780321|r 199 PLKALLIDSWYNSYLGVMVLVRIINGQLTKGQSIRLMGTNAKYQVERIGILTPKMIDIEALYPGE-IGVMIASIKEVSHT 277 (606)
Q Consensus 199 Pl~alVfds~~D~~~G~I~~~RV~sG~lk~Gd~I~~~~~g~~~~v~~ig~~~~~~~~v~~l~aGd-VG~ii~gik~l~~~ 277 (606)
|||+.|.|.+-++. |.+.+|||.+|++++||+|.+++++++.+|..+.. +..+++++.||| |+.-+.|+ +..++
T Consensus 1 P~R~pI~~v~~~~g-G~vv~G~v~sG~i~~Gd~v~i~P~~~~~~VksI~~---~~~~~~~A~aG~~V~l~L~gi-d~~~i 75 (83)
T cd03698 1 PFRLPISDKYKDQG-GTVVSGKVESGSIQKGDTLLVMPSKESVEVKSIYV---DDEEVDYAVAGENVRLKLKGI-DEEDI 75 (83)
T ss_pred CEEEEEEEEEECCC-CCEEEEEEEECEECCCCEEEEECCCCEEEEEEEEE---CCEEECEECCCCEEEEEECCC-CHHHC
T ss_conf 97989974798699-73999999025872899999978998899999999---991729888999799998489-89994
Q ss_pred CCCCEECC
Q ss_conf 45420004
Q gi|254780321|r 278 RVGDTITD 285 (606)
Q Consensus 278 ~vGDTl~~ 285 (606)
+.||-||+
T Consensus 76 ~rG~vlcs 83 (83)
T cd03698 76 SPGDVLCS 83 (83)
T ss_pred CCCCEEEC
T ss_conf 79889949
No 261
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=98.55 E-value=4.7e-07 Score=66.81 Aligned_cols=149 Identities=23% Similarity=0.339 Sum_probs=86.5
Q ss_pred CEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHCCEEEEEEEEEEEECCCCCEEEEEEEECCCCCH
Q ss_conf 31799980138987788999999829805444431130586779871950523279999743788438999961787300
Q gi|254780321|r 11 IRNFSIVAHIDHGKSTLADRFIQHCRGLTEREMSSQVLDNMDIERERGITIKAQTVRLNYTSTDAKDYQLNLIDTPGHVD 90 (606)
Q Consensus 11 IRN~~IiaHvDhGKTTL~d~lL~~tg~i~~~~~~~~vlD~~~~EreRGITIka~~~~~~~~~~~~~~y~iNlIDTPGH~D 90 (606)
.-.+++||--..|||||.-+| |++-++-..-+ +. |...-.--+.|. +-.|-|+|+||-..
T Consensus 63 da~v~lVGfPsvGKStLL~~L---Tnt~seva~y~----FT--------Tl~~vPG~l~Y~-----ga~IQild~Pgii~ 122 (365)
T COG1163 63 DATVALVGFPSVGKSTLLNKL---TNTKSEVADYP----FT--------TLEPVPGMLEYK-----GAQIQLLDLPGIIE 122 (365)
T ss_pred CEEEEEECCCCCCHHHHHHHH---HCCCCCCCCCC----CE--------ECCCCCCEEEEC-----CCEEEEECCCCCCC
T ss_conf 738999768874589999887---68876434567----41--------024457447547-----81699972763125
Q ss_pred -H------HHHHHHHHHHCCEEEEEEECCCCCCH-HHH------------------------------------------
Q ss_conf -2------79999999730268999986878865-589------------------------------------------
Q gi|254780321|r 91 -F------TYEVSRSLSACEGSLLVVDATQGVEA-QTL------------------------------------------ 120 (606)
Q Consensus 91 -F------~~EV~r~l~a~dgaiLvVdA~~Gvq~-QT~------------------------------------------ 120 (606)
+ +-||-...+.||..++|+|+.+.... ..+
T Consensus 123 gas~g~grG~~vls~~R~ADlIiiVld~~~~~~~~~~i~~ELe~~GIrlnk~~p~V~I~kk~~gGI~i~~t~~l~~~d~~ 202 (365)
T COG1163 123 GASSGRGRGRQVLSVARNADLIIIVLDVFEDPHHRDIIERELEDVGIRLNKRPPDVTIKKKESGGIRINGTGPLTHLDED 202 (365)
T ss_pred CCCCCCCCCCEEEEEECCCCEEEEEEECCCCHHHHHHHHHHHHHCCEEECCCCCCEEEEEECCCCEEEECCCCCCCCCHH
T ss_conf 76568887646546521588899997168882488999999985676821799965999952598798045456668999
Q ss_pred ------------------------HHHHHHHHCCC---CEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf ------------------------99999997099---679983267887532113388877555322321000111002
Q gi|254780321|r 121 ------------------------ANVYQAIDNNH---EIITVLNKADLPSADPDRVKKQIEETIGISTEDALLVSAKTG 173 (606)
Q Consensus 121 ------------------------~~~~~A~~~~l---~~I~viNKiD~~~A~~e~v~~ei~~~~g~~~~~ii~vSAktG 173 (606)
.-+--|+..+. |-|.|+||+|+++. |. .+.+.+. .+.+++||++|
T Consensus 203 ~ir~iL~Ey~I~nA~V~Ir~dvTlDd~id~l~~nrvY~p~l~v~NKiD~~~~--e~-~~~l~~~-----~~~v~isa~~~ 274 (365)
T COG1163 203 TVRAILREYRIHNADVLIREDVTLDDLIDALEGNRVYKPALYVVNKIDLPGL--EE-LERLARK-----PNSVPISAKKG 274 (365)
T ss_pred HHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHCCEEEEEEEEEECCCCCCH--HH-HHHHHHC-----CCEEEEECCCC
T ss_conf 9999999728363069994688689999998416213236899952556687--88-9999734-----56289865568
Q ss_pred CCCCHHHHHHHHHH
Q ss_conf 23200678776321
Q gi|254780321|r 174 EGIPLLLERIVQQL 187 (606)
Q Consensus 174 ~GV~~LLd~Iv~~i 187 (606)
.|++.|++.|-+.+
T Consensus 275 ~nld~L~e~i~~~L 288 (365)
T COG1163 275 INLDELKERIWDVL 288 (365)
T ss_pred CCHHHHHHHHHHHH
T ss_conf 79889999999874
No 262
>PRK13768 GTPase; Provisional
Probab=98.55 E-value=1.3e-06 Score=63.87 Aligned_cols=110 Identities=28% Similarity=0.392 Sum_probs=67.2
Q ss_pred CEEEEEEEECCCCC------HHHHHHHHHHHHC--CEEEEEEECCCCCCHHHH-HHHHHH----HHCCCCEEEEECCCCC
Q ss_conf 43899996178730------0279999999730--268999986878865589-999999----9709967998326788
Q gi|254780321|r 76 KDYQLNLIDTPGHV------DFTYEVSRSLSAC--EGSLLVVDATQGVEAQTL-ANVYQA----IDNNHEIITVLNKADL 142 (606)
Q Consensus 76 ~~y~iNlIDTPGH~------DF~~EV~r~l~a~--dgaiLvVdA~~Gvq~QT~-~~~~~A----~~~~l~~I~viNKiD~ 142 (606)
.+|. |+||||.. +.+....+.|..- -.++.++|+.-=..|.+- +++..| ...++|.|.|+||+|+
T Consensus 97 ~dY~--i~D~PGQiElft~~~~~~~i~~~L~~~~~~~~v~l~D~~~~~~~~~fiS~~L~a~s~m~~l~lP~inVlsK~Dl 174 (253)
T PRK13768 97 ADYV--LVDTPGQMELFAFRESGRYLVEKLSSGSKSLSVYLIDAVLAKDPSDFVSLLLLALSVQLRLGLPQIPVLNKIDL 174 (253)
T ss_pred CCEE--EEECCCCEEEEECCHHHHHHHHHHHCCCCEEEEEEECHHHHCCHHHHHHHHHHHHHHHHHCCCCEEEEEEHHHC
T ss_conf 8759--98268744322234079999999863686289998450563788799999999999999739997998676862
Q ss_pred CCCC-----------CCCHHHHHHHH-----------H----HHH-HHHHHHHHHHCCCCCCHHHHHHHHHH
Q ss_conf 7532-----------11338887755-----------5----322-32100011100223200678776321
Q gi|254780321|r 143 PSAD-----------PDRVKKQIEET-----------I----GIS-TEDALLVSAKTGEGIPLLLERIVQQL 187 (606)
Q Consensus 143 ~~A~-----------~e~v~~ei~~~-----------~----g~~-~~~ii~vSAktG~GV~~LLd~Iv~~i 187 (606)
-..+ ++...+++.+. . ++. .-..+|+|+++|.|++.|+.+|-+.+
T Consensus 175 l~~~~~~~i~~~~~D~~~l~~~l~~~~~~~~~l~~~l~~~l~e~~~~v~~ipvS~~~~eg~~~l~~~I~~~~ 246 (253)
T PRK13768 175 LSEEELERIRKWLEDPETLLEELKLDKGVQGDLAEELLSALEESGIPVRVIPVSAKTGEGFEELYALLQEVF 246 (253)
T ss_pred CCHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 783779999998629999999985061158999999999999846666527756898787999999999996
No 263
>cd01342 Translation_Factor_II_like Translation_Factor_II_like: Elongation factor Tu (EF-Tu) domain II-like proteins. Elongation factor Tu consists of three structural domains, this family represents the second domain. Domain II adopts a beta barrel structure and is involved in binding to charged tRNA. Domain II is found in other proteins such as elongation factor G and translation initiation factor IF-2. This group also includes the C2 subdomain of domain IV of IF-2 that has the same fold as domain II of (EF-Tu). Like IF-2 from certain prokaryotes such as Thermus thermophilus, mitochondrial IF-2 lacks domain II, which is thought to be involved in binding of E.coli IF-2 to 30S subunits.
Probab=98.55 E-value=6.1e-08 Score=72.79 Aligned_cols=81 Identities=23% Similarity=0.407 Sum_probs=63.4
Q ss_pred CCCCCCCEEECCCCCEEEEEEECCCCCCCCCEEEEEC--CCCCCCCCCCCCCCCCEEEEHHCCCCCHHHHHHCCCCCCCC
Q ss_conf 3310121011475725999981698735584588733--55642101222335541240101247123322011002444
Q gi|254780321|r 200 LKALLIDSWYNSYLGVMVLVRIINGQLTKGQSIRLMG--TNAKYQVERIGILTPKMIDIEALYPGEIGVMIASIKEVSHT 277 (606)
Q Consensus 200 l~alVfds~~D~~~G~I~~~RV~sG~lk~Gd~I~~~~--~g~~~~v~~ig~~~~~~~~v~~l~aGdVG~ii~gik~l~~~ 277 (606)
++++|++++.+++.|.++++||++|++++||.+.+.+ .....++..+..+. .+++++.||+++.++.. +..+.
T Consensus 1 ~~~~v~~~~~~~~~g~v~~~rv~~G~l~~g~~v~~~~~~~~~~~~v~~i~~~~---~~~~~~~aG~~~~~~~~--~~~~~ 75 (83)
T cd01342 1 LRALVFKVFKDKGRGTVATGRVESGTLKKGDKVRVGPGGGGVKGKVKSLKRFK---GEVDEAVAGDIVGIVLK--DKDDI 75 (83)
T ss_pred CEEEEEEEEEECCCEEEEEEEECCCEEECCCEEEEECCCCCEEEEEEEEEEEC---CCCCEECCCCEEEEEEC--CHHHC
T ss_conf 91299999991896899999993429989999999709963899998999922---37779848989999971--63534
Q ss_pred CCCCEECC
Q ss_conf 45420004
Q gi|254780321|r 278 RVGDTITD 285 (606)
Q Consensus 278 ~vGDTl~~ 285 (606)
++||+++.
T Consensus 76 ~~gd~~~~ 83 (83)
T cd01342 76 KIGDTLTD 83 (83)
T ss_pred CCCCEECC
T ss_conf 79989829
No 264
>pfam03308 ArgK ArgK protein. The ArgK protein acts as an ATPase enzyme and as a kinase, and phosphorylates periplasmic binding proteins involved in the LAO (lysine, arginine, ornithine)/AO transport systems.
Probab=98.52 E-value=2.3e-07 Score=68.94 Aligned_cols=172 Identities=26% Similarity=0.258 Sum_probs=106.3
Q ss_pred HCEEEEEECCCCCCHHHHHHHHHHHC---C----C--CCC---CCCCCEEECCCHH---HHHHCCEEEEEEEEEEEEC--
Q ss_conf 53179998013898778899999982---9----8--054---4443113058677---9871950523279999743--
Q gi|254780321|r 10 RIRNFSIVAHIDHGKSTLADRFIQHC---R----G--LTE---REMSSQVLDNMDI---ERERGITIKAQTVRLNYTS-- 72 (606)
Q Consensus 10 ~IRN~~IiaHvDhGKTTL~d~lL~~t---g----~--i~~---~~~~~~vlD~~~~---EreRGITIka~~~~~~~~~-- 72 (606)
+-.-|+|-|--++|||||.|+|...- | . |+. ...+.-+=|..-. -+..++=|.+.+.+-..-+
T Consensus 28 ~a~~iGiTG~PGaGKStli~~l~~~~~~~g~~vaVlAvDPSS~~sgGaiLGDr~RM~~~~~~~~vfiRs~~srg~lGGls 107 (267)
T pfam03308 28 RAHRVGITGVPGAGKSTLIEALGMELRRRGHRVAVLAVDPSSPFTGGSILGDRTRMQRLAVDPGAFIRSSPSRGALGGLS 107 (267)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCHHHHHHHCCCCCEEEEECCCCCCCCCCC
T ss_conf 95599876899887999999999999968986899997899988886300107777650589985886457788888714
Q ss_pred ---------CCCCEEEEEEEECCCCCHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCC
Q ss_conf ---------78843899996178730027999999973026899998687886558999999997099679983267887
Q gi|254780321|r 73 ---------TDAKDYQLNLIDTPGHVDFTYEVSRSLSACEGSLLVVDATQGVEAQTLANVYQAIDNNHEIITVLNKADLP 143 (606)
Q Consensus 73 ---------~~~~~y~iNlIDTPGH~DF~~EV~r~l~a~dgaiLvVdA~~Gvq~QT~~~~~~A~~~~l~~I~viNKiD~~ 143 (606)
++.-.|-+=||.|-|-- ..|+. ...++|..+||.-.-.|=+-|.. +|--+.+.=|+||||.|++
T Consensus 108 ~~t~~~i~lleaaGfD~IivETVGVG--QsE~~-v~~~aD~~llv~~Pg~GDeiQ~i----KaGImEiaDi~vVNKaD~~ 180 (267)
T pfam03308 108 RATREAILLLDAAGFDVIIIETVGVG--QSEVD-IANMADTFVLVTIPGGGDDLQGI----KAGLMEIADIYVVNKADLP 180 (267)
T ss_pred HHHHHHHHHHHHCCCCEEEEECCCCC--CCCHH-HHHHCCEEEEEECCCCCHHHHHH----HHHHHHHCCEEEEECCCHH
T ss_conf 76999999999779999999247777--53035-55415768999558876088898----7537653548999667647
Q ss_pred CCCCCCHHHHHHHHHHHHHH-------HHHHHHHHCCCCCCHHHHHHHHHHHCC
Q ss_conf 53211338887755532232-------100011100223200678776321000
Q gi|254780321|r 144 SADPDRVKKQIEETIGISTE-------DALLVSAKTGEGIPLLLERIVQQLPSP 190 (606)
Q Consensus 144 ~A~~e~v~~ei~~~~g~~~~-------~ii~vSAktG~GV~~LLd~Iv~~iP~P 190 (606)
+|+ +...++...+.+... .++.+||.+|.|+++|.++|.++.-.-
T Consensus 181 ~A~--~~~~~l~~~l~l~~~~~~~W~p~Vl~tSA~~g~Gi~el~~~I~~~~~~l 232 (267)
T pfam03308 181 GAE--RTARELRSALHLLTPKEAGWRPPVLTTSAVTGEGIDELWDAIEEHREFL 232 (267)
T ss_pred HHH--HHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHH
T ss_conf 699--9999999998517987789999989987478899999999999999999
No 265
>KOG0098 consensus
Probab=98.51 E-value=4.2e-06 Score=60.45 Aligned_cols=150 Identities=28% Similarity=0.391 Sum_probs=87.2
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCC-CCCCCCCCEEECCCHHHHHHCCEEEEEEEEEEEECCCCCEEEEEEEECCCCCHH
Q ss_conf 7999801389877889999998298-054444311305867798719505232799997437884389999617873002
Q gi|254780321|r 13 NFSIVAHIDHGKSTLADRFIQHCRG-LTEREMSSQVLDNMDIERERGITIKAQTVRLNYTSTDAKDYQLNLIDTPGHVDF 91 (606)
Q Consensus 13 N~~IiaHvDhGKTTL~d~lL~~tg~-i~~~~~~~~vlD~~~~EreRGITIka~~~~~~~~~~~~~~y~iNlIDTPGH~DF 91 (606)
-.-|||.-+-|||.|. |..|.. +.. +-| .-+ |+---+..+ ..+++.-++++.||-||.-|
T Consensus 8 KyIiiGd~gVGKScll---lrf~~krF~~------~hd-~Ti----Gvefg~r~~-----~id~k~IKlqiwDtaGqe~f 68 (216)
T KOG0098 8 KYIIIGDTGVGKSCLL---LRFTDKRFQP------VHD-LTI----GVEFGARMV-----TIDGKQIKLQIWDTAGQESF 68 (216)
T ss_pred EEEEECCCCCCHHHHH---HHHHCCCCCC------CCC-CEE----EEEECEEEE-----EECCCEEEEEEEECCCCHHH
T ss_conf 8999877773288999---9985157654------534-302----244023698-----88581689999755786769
Q ss_pred HHHHHHH-HHHCCEEEEEEECCCCCCHHHHH---HHH-HHHHC---CCCEEEEECCCCCCCCCCCCHHHHHHHHHHHH-H
Q ss_conf 7999999-97302689999868788655899---999-99970---99679983267887532113388877555322-3
Q gi|254780321|r 92 TYEVSRS-LSACEGSLLVVDATQGVEAQTLA---NVY-QAIDN---NHEIITVLNKADLPSADPDRVKKQIEETIGIS-T 162 (606)
Q Consensus 92 ~~EV~r~-l~a~dgaiLvVdA~~Gvq~QT~~---~~~-~A~~~---~l~~I~viNKiD~~~A~~e~v~~ei~~~~g~~-~ 162 (606)
++|.|+ .+-+.|||||-|-+. ..|-- .|. -+.++ +..+++.=||+|+..-+ .|.+|=-+.|.=. .
T Consensus 69 -rsv~~syYr~a~GalLVydit~---r~sF~hL~~wL~D~rq~~~~NmvImLiGNKsDL~~rR--~Vs~EEGeaFA~ehg 142 (216)
T KOG0098 69 -RSVTRSYYRGAAGALLVYDITR---RESFNHLTSWLEDARQHSNENMVIMLIGNKSDLEARR--EVSKEEGEAFAREHG 142 (216)
T ss_pred -HHHHHHHHCCCCCEEEEEECCC---HHHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHCCC--CCCHHHHHHHHHHCC
T ss_conf -9988888446762389997130---6667789999999997267883899974414421023--465888999999739
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHH
Q ss_conf 2100011100223200678776321
Q gi|254780321|r 163 EDALLVSAKTGEGIPLLLERIVQQL 187 (606)
Q Consensus 163 ~~ii~vSAktG~GV~~LLd~Iv~~i 187 (606)
--...+||+++.||++.+-.+-..+
T Consensus 143 LifmETSakt~~~VEEaF~nta~~I 167 (216)
T KOG0098 143 LIFMETSAKTAENVEEAFINTAKEI 167 (216)
T ss_pred CEEEHHHHHHHHHHHHHHHHHHHHH
T ss_conf 5444124455423999999999999
No 266
>KOG0084 consensus
Probab=98.50 E-value=5.5e-06 Score=59.68 Aligned_cols=159 Identities=25% Similarity=0.244 Sum_probs=100.3
Q ss_pred HCEEE--EEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHCCEEEEEEEEEEEECCCCCEEEEEEEECCC
Q ss_conf 53179--9980138987788999999829805444431130586779871950523279999743788438999961787
Q gi|254780321|r 10 RIRNF--SIVAHIDHGKSTLADRFIQHCRGLTEREMSSQVLDNMDIERERGITIKAQTVRLNYTSTDAKDYQLNLIDTPG 87 (606)
Q Consensus 10 ~IRN~--~IiaHvDhGKTTL~d~lL~~tg~i~~~~~~~~vlD~~~~EreRGITIka~~~~~~~~~~~~~~y~iNlIDTPG 87 (606)
--++| -+||-.+-|||-|.-|+ ..++..++-.. + =|+-.+..++ ..+|+.-++.+.||-|
T Consensus 6 ~dylFKiiliGds~VGKtCL~~Rf--~~~~f~e~~~s-T----------IGVDf~~rt~-----e~~gk~iKlQIWDTAG 67 (205)
T KOG0084 6 YDYLFKIILIGDSGVGKTCLLLRF--KDDTFTESYIS-T----------IGVDFKIRTV-----ELDGKTIKLQIWDTAG 67 (205)
T ss_pred CCEEEEEEEECCCCCCHHHHHHHH--CCCCCCHHHCC-E----------EEEEEEEEEE-----EECCEEEEEEEEECCC
T ss_conf 426899999877896763555666--26985333232-3----------1267889875-----5526488887666365
Q ss_pred CCHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHH----HCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 3002799999997302689999868788655899999999----709967998326788753211338887755532232
Q gi|254780321|r 88 HVDFTYEVSRSLSACEGSLLVVDATQGVEAQTLANVYQAI----DNNHEIITVLNKADLPSADPDRVKKQIEETIGISTE 163 (606)
Q Consensus 88 H~DF~~EV~r~l~a~dgaiLvVdA~~Gvq~QT~~~~~~A~----~~~l~~I~viNKiD~~~A~~e~v~~ei~~~~g~~~~ 163 (606)
..-|-..++.--+-+.|+|+|-|-+.---=+-+..|..-. ..++++++|=||.|+..++.-.. ++.+++.+-.+.
T Consensus 68 QERFrtit~syYR~ahGii~vyDiT~~~SF~~v~~Wi~Ei~~~~~~~v~~lLVGNK~Dl~~~~~v~~-~~a~~fa~~~~~ 146 (205)
T KOG0084 68 QERFRTITSSYYRGAHGIIFVYDITKQESFNNVKRWIQEIDRYASENVPKLLVGNKCDLTEKRVVST-EEAQEFADELGI 146 (205)
T ss_pred CHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHCCCCH-HHHHHHHHHCCC
T ss_conf 3777555476616787599999765577765488999986652467787688862455186400179-999999864298
Q ss_pred H-HHHHHHHCCCCCCHHHHHHHHHH
Q ss_conf 1-00011100223200678776321
Q gi|254780321|r 164 D-ALLVSAKTGEGIPLLLERIVQQL 187 (606)
Q Consensus 164 ~-ii~vSAktG~GV~~LLd~Iv~~i 187 (606)
. .+.+|||++.+|++.+..+...+
T Consensus 147 ~~f~ETSAK~~~NVe~~F~~la~~l 171 (205)
T KOG0084 147 PIFLETSAKDSTNVEDAFLTLAKEL 171 (205)
T ss_pred CCEEECCCCCCCCHHHHHHHHHHHH
T ss_conf 3035504687547999999999999
No 267
>KOG0073 consensus
Probab=98.50 E-value=3.9e-06 Score=60.69 Aligned_cols=149 Identities=23% Similarity=0.287 Sum_probs=92.8
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHCCEEEEEEEEEEEECCCCCEEEEEEEECCCCCHHHH
Q ss_conf 99980138987788999999829805444431130586779871950523279999743788438999961787300279
Q gi|254780321|r 14 FSIVAHIDHGKSTLADRFIQHCRGLTEREMSSQVLDNMDIERERGITIKAQTVRLNYTSTDAKDYQLNLIDTPGHVDFTY 93 (606)
Q Consensus 14 ~~IiaHvDhGKTTL~d~lL~~tg~i~~~~~~~~vlD~~~~EreRGITIka~~~~~~~~~~~~~~y~iNlIDTPGH~DF~~ 93 (606)
+-|+|--.+||||+..+++ |.-. + .+..-+|.-|| ++.| +.|++|+.|.-|..-+..
T Consensus 19 iLiLGLdNsGKTti~~kl~---~~~~-----~------~i~pt~gf~Ik----tl~~-----~~~~L~iwDvGGq~~lr~ 75 (185)
T KOG0073 19 ILILGLDNSGKTTIVKKLL---GEDT-----D------TISPTLGFQIK----TLEY-----KGYTLNIWDVGGQKTLRS 75 (185)
T ss_pred EEEEECCCCCCHHHHHHHC---CCCC-----C------CCCCCCCEEEE----EEEE-----CCEEEEEEECCCCCHHHH
T ss_conf 9999127898244898853---8982-----2------32872113557----8774-----242899997488533687
Q ss_pred HHHHHHHHCCEEEEEEECCCC-CCHHHHHHHHHHH----HCCCCEEEEECCCCCCCCCCCCHHHHH---HHHHHHHHHHH
Q ss_conf 999999730268999986878-8655899999999----709967998326788753211338887---75553223210
Q gi|254780321|r 94 EVSRSLSACEGSLLVVDATQG-VEAQTLANVYQAI----DNNHEIITVLNKADLPSADPDRVKKQI---EETIGISTEDA 165 (606)
Q Consensus 94 EV~r~l~a~dgaiLvVdA~~G-vq~QT~~~~~~A~----~~~l~~I~viNKiD~~~A~~e~v~~ei---~~~~g~~~~~i 165 (606)
==..-..-.||.|.|||..+- .+.+|...+.-++ ..|-+++++-||.|+++|=-.+....+ ++++--..-.+
T Consensus 76 ~W~nYfestdglIwvvDssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~~~l~~~~i~~~~~L~~l~ks~~~~l 155 (185)
T KOG0073 76 YWKNYFESTDGLIWVVDSSDRMRMQECKQELTELLVEERLAGAPLLVLANKQDLPGALSLEEISKALDLEELAKSHHWRL 155 (185)
T ss_pred HHHHHHHCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHCHHHHCCCCCCEE
T ss_conf 88776650472899997720888999999999997565434884399973476855247878887647787613367228
Q ss_pred HHHHHHCCCCCCHHHHHHHH
Q ss_conf 00111002232006787763
Q gi|254780321|r 166 LLVSAKTGEGIPLLLERIVQ 185 (606)
Q Consensus 166 i~vSAktG~GV~~LLd~Iv~ 185 (606)
+.|||.+|.++.+=+|-+++
T Consensus 156 ~~cs~~tge~l~~gidWL~~ 175 (185)
T KOG0073 156 VKCSAVTGEDLLEGIDWLCD 175 (185)
T ss_pred EEEECCCCCCHHHHHHHHHH
T ss_conf 99854545647888899999
No 268
>KOG0094 consensus
Probab=98.48 E-value=1.3e-05 Score=57.10 Aligned_cols=163 Identities=21% Similarity=0.315 Sum_probs=106.0
Q ss_pred HHCEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHCCEEEEEEEEEEEECCCCCEEEEEEEECCCC
Q ss_conf 25317999801389877889999998298054444311305867798719505232799997437884389999617873
Q gi|254780321|r 9 SRIRNFSIVAHIDHGKSTLADRFIQHCRGLTEREMSSQVLDNMDIERERGITIKAQTVRLNYTSTDAKDYQLNLIDTPGH 88 (606)
Q Consensus 9 ~~IRN~~IiaHvDhGKTTL~d~lL~~tg~i~~~~~~~~vlD~~~~EreRGITIka~~~~~~~~~~~~~~y~iNlIDTPGH 88 (606)
-+.=-+..+|--.-|||+|.-|++|.+ +.. .-+.++ ||--.+.+. . ..+..+++-|.||-|.
T Consensus 20 ~k~~KlVflGdqsVGKTslItRf~yd~--fd~-~YqATI----------GiDFlskt~--~---l~d~~vrLQlWDTAGQ 81 (221)
T KOG0094 20 LKKYKLVFLGDQSVGKTSLITRFMYDK--FDN-TYQATI----------GIDFLSKTM--Y---LEDRTVRLQLWDTAGQ 81 (221)
T ss_pred CEEEEEEEECCCCCCHHHHHHHHHHHH--HCC-CCCCEE----------EEEEEEEEE--E---ECCCEEEEEEEECCCH
T ss_conf 307789998667654478888998763--046-456546----------567778889--9---7381789998754467
Q ss_pred CHHHHHHHHHHHHCCEEEEEEECCCC-CCHHHHHHHHHHH-HCCCC-EEEE--ECCCCCCCCCCCCHHHHHHHHH--HHH
Q ss_conf 00279999999730268999986878-8655899999999-70996-7998--3267887532113388877555--322
Q gi|254780321|r 89 VDFTYEVSRSLSACEGSLLVVDATQG-VEAQTLANVYQAI-DNNHE-IITV--LNKADLPSADPDRVKKQIEETI--GIS 161 (606)
Q Consensus 89 ~DF~~EV~r~l~a~dgaiLvVdA~~G-vq~QT~~~~~~A~-~~~l~-~I~v--iNKiD~~~A~~e~v~~ei~~~~--g~~ 161 (606)
.-|-.-+..-++-+..||+|-|-+.- ---+|..++.-++ +.|-. +|++ =||-|+.+ ..++..+=-+.. ++.
T Consensus 82 ERFrslipsY~Rds~vaviVyDit~~~Sfe~t~kWi~dv~~e~gs~~viI~LVGnKtDL~d--krqvs~eEg~~kAkel~ 159 (221)
T KOG0094 82 ERFRSLIPSYIRDSSVAVIVYDITDRNSFENTSKWIEDVRRERGSDDVIIFLVGNKTDLSD--KRQVSIEEGERKAKELN 159 (221)
T ss_pred HHHHHHHHHHCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCC--HHHHHHHHHHHHHHHHC
T ss_conf 8775310555038737999996356401776999999998606888659999716312444--65653887898898729
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHCCCC
Q ss_conf 3210001110022320067877632100011
Q gi|254780321|r 162 TEDALLVSAKTGEGIPLLLERIVQQLPSPTS 192 (606)
Q Consensus 162 ~~~ii~vSAktG~GV~~LLd~Iv~~iP~P~~ 192 (606)
. +.+.+|||+|.||.+|+..|...+|.+..
T Consensus 160 a-~f~etsak~g~NVk~lFrrIaa~l~~~~~ 189 (221)
T KOG0094 160 A-EFIETSAKAGENVKQLFRRIAAALPGMEV 189 (221)
T ss_pred C-EEEEECCCCCCCHHHHHHHHHHHCCCCCC
T ss_conf 5-89983044799889999999986657310
No 269
>TIGR00073 hypB hydrogenase accessory protein HypB; InterPro: IPR004392 The hydrogenase accessory protein HypB is a GTP hydrolase for assembly of nickel metallocentre of hydrogenase. A similar protein, ureG, is an accessory protein for urease, which also uses nickel.; GO: 0016151 nickel ion binding, 0006461 protein complex assembly.
Probab=98.42 E-value=5.2e-07 Score=66.53 Aligned_cols=149 Identities=25% Similarity=0.367 Sum_probs=91.3
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCC--CCCEEECCCHHHHHH--CCEEEEEEEE------EE----E--------
Q ss_conf 799980138987788999999829805444--431130586779871--9505232799------99----7--------
Q gi|254780321|r 13 NFSIVAHIDHGKSTLADRFIQHCRGLTERE--MSSQVLDNMDIERER--GITIKAQTVR------LN----Y-------- 70 (606)
Q Consensus 13 N~~IiaHvDhGKTTL~d~lL~~tg~i~~~~--~~~~vlD~~~~EreR--GITIka~~~~------~~----~-------- 70 (606)
=+-+++=+++|||||.|+++.....--+-. .++.. -..|-+|=| |+.. ..++ +. +
T Consensus 36 ~lNfmsspGSGKT~LiEk~~~~~~~~~K~Avi~GD~~-t~~DA~RlR~~G~~a--~~~nTGk~CHLdA~mv~G~~~~L~~ 112 (225)
T TIGR00073 36 VLNFMSSPGSGKTTLIEKLIERLDDEVKIAVIEGDVQ-TKNDADRLRKYGVPA--IQINTGKECHLDAHMVAGAIHALKD 112 (225)
T ss_pred EEEECCCCCCCHHHHHHHHHHHHCCCCCEEEEECCHH-HHHHHHHHHHCCCEE--EEECCCCCCCCHHHHHHHHHHHHHC
T ss_conf 9980258861158999999998457897899975532-255699998649868--8636886444016678658755421
Q ss_pred ECCCCC-EEEE-----EEEECCCCCHHHHHHHHHHHHCCEEEEEEECCCC---CC--HHHHHHHHHHHHCCCCEEEEECC
Q ss_conf 437884-3899-----9961787300279999999730268999986878---86--55899999999709967998326
Q gi|254780321|r 71 TSTDAK-DYQL-----NLIDTPGHVDFTYEVSRSLSACEGSLLVVDATQG---VE--AQTLANVYQAIDNNHEIITVLNK 139 (606)
Q Consensus 71 ~~~~~~-~y~i-----NlIDTPGH~DF~~EV~r~l~a~dgaiLvVdA~~G---vq--~QT~~~~~~A~~~~l~~I~viNK 139 (606)
.+.+-. |..| ||| ||--.|.+. .-=|.|++.+|| |+ |.+ |..|- +++|||
T Consensus 113 ~~ld~~~DlL~IENVGNLv-CP~~FdLGe---------~~rVvllSVTEGdDk~lKyP~~---F~~Ad------~~~inK 173 (225)
T TIGR00073 113 LPLDDISDLLLIENVGNLV-CPADFDLGE---------HMRVVLLSVTEGDDKVLKYPAM---FKEAD------LILINK 173 (225)
T ss_pred CCCCCCCCEEEEEECCCCE-ECCCCCCCC---------CCEEEEEEECCCCCCCCCCCHH---HHHHH------HHHHCH
T ss_conf 6888714626886447610-067311235---------6307999865899965466158---87444------562147
Q ss_pred CCCC---CCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q ss_conf 7887---532113388877555322321000111002232006787763
Q gi|254780321|r 140 ADLP---SADPDRVKKQIEETIGISTEDALLVSAKTGEGIPLLLERIVQ 185 (606)
Q Consensus 140 iD~~---~A~~e~v~~ei~~~~g~~~~~ii~vSAktG~GV~~LLd~Iv~ 185 (606)
.|+- ++|.|++.+.++.+= +.-+|+.+|||||.|++..++.|-.
T Consensus 174 ~DL~~~v~~D~ek~~~d~~~~n--P~a~Ii~~S~ktg~Gl~~w~~~l~~ 220 (225)
T TIGR00073 174 VDLAEAVGFDVEKMKADARKIN--PEAEIILVSAKTGKGLDEWLEFLEG 220 (225)
T ss_pred HHHHHHHCCCHHHHHHHHHHHC--CCEEEEEEECCCCCCHHHHHHHHHH
T ss_conf 8899770736789999998628--9507998636897347899999998
No 270
>cd03696 selB_II selB_II: this subfamily represents the domain of elongation factor SelB, homologous to domain II of EF-Tu. SelB may function by replacing EF-Tu. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3' or 5' non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation.
Probab=98.39 E-value=4.1e-07 Score=67.24 Aligned_cols=82 Identities=13% Similarity=0.317 Sum_probs=67.2
Q ss_pred CCCCCCCEEECCCCCEEEEEEECCCCCCCCCEEEEECCCCCCCCCCCCCCCCCEEEEHHCCCCC-HHHHHHCCCCCCCCC
Q ss_conf 3310121011475725999981698735584588733556421012223355412401012471-233220110024444
Q gi|254780321|r 200 LKALLIDSWYNSYLGVMVLVRIINGQLTKGQSIRLMGTNAKYQVERIGILTPKMIDIEALYPGE-IGVMIASIKEVSHTR 278 (606)
Q Consensus 200 l~alVfds~~D~~~G~I~~~RV~sG~lk~Gd~I~~~~~g~~~~v~~ig~~~~~~~~v~~l~aGd-VG~ii~gik~l~~~~ 278 (606)
|++.|-+++--+..|.+++|+|.+|+++.||++.+++.+++.++..+.. +..+++.+.||| +|..+.++ +..+++
T Consensus 1 fr~~Id~~F~i~G~GtVvtGtv~sG~i~~gd~l~i~P~~~~~~VksI~~---~~~~~~~a~aG~~v~i~L~~i-~~~di~ 76 (83)
T cd03696 1 FRLPIDRVFTVKGQGTVVTGTVLSGSVKVGDKVEILPLGEETRVRSIQV---HGKDVEEAKAGDRVALNLTGV-DAKDLE 76 (83)
T ss_pred CEEEEEEEEECCCCEEEEEEEECCCCCCCCCEEEECCCCCEEEEEEEEE---CCCEECEECCCCEEEEEEECC-CHHHCC
T ss_conf 9848868998189579999999679856999999978773389999998---995968897998799997589-767358
Q ss_pred CCCEECC
Q ss_conf 5420004
Q gi|254780321|r 279 VGDTITD 285 (606)
Q Consensus 279 vGDTl~~ 285 (606)
.||.||.
T Consensus 77 rG~vl~s 83 (83)
T cd03696 77 RGDVLSS 83 (83)
T ss_pred CCCEEEC
T ss_conf 6789919
No 271
>KOG0395 consensus
Probab=98.37 E-value=2.8e-06 Score=61.65 Aligned_cols=159 Identities=19% Similarity=0.225 Sum_probs=101.5
Q ss_pred CEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHCCEEEEEEEEEEEECCCCCEEEEEEEECCCCCH
Q ss_conf 31799980138987788999999829805444431130586779871950523279999743788438999961787300
Q gi|254780321|r 11 IRNFSIVAHIDHGKSTLADRFIQHCRGLTEREMSSQVLDNMDIERERGITIKAQTVRLNYTSTDAKDYQLNLIDTPGHVD 90 (606)
Q Consensus 11 IRN~~IiaHvDhGKTTL~d~lL~~tg~i~~~~~~~~vlD~~~~EreRGITIka~~~~~~~~~~~~~~y~iNlIDTPGH~D 90 (606)
-..+.++|..+-|||+|+=+++ ++.+... ..-+. | +...+.+. .+++.+.+.++||+|..+
T Consensus 3 ~~kvvvlG~~gVGKSal~~qf~--~~~f~~~-----y~pti--e-----d~y~k~~~-----v~~~~~~l~ilDt~g~~~ 63 (196)
T KOG0395 3 EYKVVVLGAGGVGKSALTIQFL--TGRFVED-----YDPTI--E-----DSYRKELT-----VDGEVCMLEILDTAGQEE 63 (196)
T ss_pred CEEEEEECCCCCCCCCEEEEEC--CCCCCCC-----CCCCC--C-----CCEEEEEE-----ECCEEEEEEEEECCCCCC
T ss_conf 1479997789888530578963--5755443-----47976--7-----63159999-----899788999982888534
Q ss_pred HHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHH-----HCCCCEEEEECCCCCCCCCCCCHHHHHHHHH-HHHHHH
Q ss_conf 2799999997302689999868788655899999999-----7099679983267887532113388877555-322321
Q gi|254780321|r 91 FTYEVSRSLSACEGSLLVVDATQGVEAQTLANVYQAI-----DNNHEIITVLNKADLPSADPDRVKKQIEETI-GISTED 164 (606)
Q Consensus 91 F~~EV~r~l~a~dgaiLvVdA~~Gvq~QT~~~~~~A~-----~~~l~~I~viNKiD~~~A~~e~v~~ei~~~~-g~~~~~ 164 (606)
|...-...++..||=+||.+.++=-.=+....++..+ ...+|+|.|-||.|++.-+.-. .++-..+. .+...
T Consensus 64 ~~~~~~~~~~~~~gF~lVysitd~~SF~~~~~l~~~I~r~~~~~~~PivlVGNK~Dl~~~R~V~-~eeg~~la~~~~~~- 141 (196)
T KOG0395 64 FSAMRDLYIRNGDGFLLVYSITDRSSFEEAKQLREQILRVKGRDDVPIILVGNKCDLERERQVS-EEEGKALARSWGCA- 141 (196)
T ss_pred CHHHHHHHHHCCCEEEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCHHHCCCC-HHHHHHHHHHHCCC-
T ss_conf 7688887755486899999898888999999999999864076778879998855532304243-99999999970996-
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHCC
Q ss_conf 00011100223200678776321000
Q gi|254780321|r 165 ALLVSAKTGEGIPLLLERIVQQLPSP 190 (606)
Q Consensus 165 ii~vSAktG~GV~~LLd~Iv~~iP~P 190 (606)
.+-+||+.+.+|++++..++..+-.|
T Consensus 142 f~E~Sak~~~~v~~~F~~L~r~~~~~ 167 (196)
T KOG0395 142 FIETSAKLNYNVDEVFYELVREIRLP 167 (196)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHH
T ss_conf 79975144758899999999999854
No 272
>pfam03144 GTP_EFTU_D2 Elongation factor Tu domain 2. Elongation factor Tu consists of three structural domains, this is the second domain. This domain adopts a beta barrel structure. This the second domain is involved in binding to charged tRNA. This domain is also found in other proteins such as elongation factor G and translation initiation factor IF-2. This domain is structurally related to pfam03143, and in fact has weak sequence matches to this domain.
Probab=98.37 E-value=2.7e-07 Score=68.44 Aligned_cols=67 Identities=22% Similarity=0.287 Sum_probs=50.0
Q ss_pred CEEEEEEECCCCCCCCCEEEEEC--CCCCCCCCCCCCCCC-CEEEEHHCCCCCHHHHHHCCCCCCCCCCCCEEC
Q ss_conf 25999981698735584588733--556421012223355-412401012471233220110024444542000
Q gi|254780321|r 214 GVMVLVRIINGQLTKGQSIRLMG--TNAKYQVERIGILTP-KMIDIEALYPGEIGVMIASIKEVSHTRVGDTIT 284 (606)
Q Consensus 214 G~I~~~RV~sG~lk~Gd~I~~~~--~g~~~~v~~ig~~~~-~~~~v~~l~aGdVG~ii~gik~l~~~~vGDTl~ 284 (606)
|+++++||+||+|++||+|.+++ +.++.++..+..+.. .+.++....+|+ ++.+.+++++++||||+
T Consensus 1 G~v~~grv~~G~lk~gd~v~~~~~~~~~~~kV~~l~~~~~~~~~~~~g~~~g~----iv~~~~~~~i~~Gdti~ 70 (70)
T pfam03144 1 GTVATGRVESGTLKKGDKVVIGPNGTGKKGRVTSLEMFHGDLREAVAGANAGI----ILAGIGLKDIKRGDTLT 70 (70)
T ss_pred CEEEEEEEEECEEECCCEEEEECCCCCCCEEEEEEEEECCCHHHHHCCCCCEE----EEEECCCCCCCCCCEEC
T ss_conf 95999999809896599999936996221377189997755122115110003----78746704572467949
No 273
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.35 E-value=2.7e-06 Score=61.70 Aligned_cols=96 Identities=22% Similarity=0.190 Sum_probs=70.9
Q ss_pred HHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 27999999973026899998687886558999999997099679983267887532113388877555322321000111
Q gi|254780321|r 91 FTYEVSRSLSACEGSLLVVDATQGVEAQTLANVYQAIDNNHEIITVLNKADLPSADPDRVKKQIEETIGISTEDALLVSA 170 (606)
Q Consensus 91 F~~EV~r~l~a~dgaiLvVdA~~Gvq~QT~~~~~~A~~~~l~~I~viNKiD~~~A~~e~v~~ei~~~~g~~~~~ii~vSA 170 (606)
|--.+.+++..+|-+|.|+||..+.-..-........+.+-|+++|+||+|+-. .+..++....+.-...+++++||
T Consensus 2 ~rr~i~~~i~~~D~il~VvDar~p~~~~~~~l~~~l~~~~K~~ilvlNK~Dl~~---~~~~~~~~~~~~~~g~~~i~iSa 78 (156)
T cd01859 2 WKRLVRRIIKESDVVLEVLDARDPELTRSRKLERYVLELGKKLLIVLNKADLVP---KEVLEKWKSIKESEGIPVVYVSA 78 (156)
T ss_pred HHHHHHHHHHHCCEEEEEEECCCCCCCCCHHHHHHHHHCCCCEEEEEECCCCCC---HHHHHHHHHHHHCCCCCEEEEEC
T ss_conf 789999999879999999987889998698999999756993999977555589---89999999998289997378701
Q ss_pred HCCCCCCHHHHHHHHHHHC
Q ss_conf 0022320067877632100
Q gi|254780321|r 171 KTGEGIPLLLERIVQQLPS 189 (606)
Q Consensus 171 ktG~GV~~LLd~Iv~~iP~ 189 (606)
+.+.|+..|.+.+.+..+.
T Consensus 79 ~~~~g~~~L~~~i~~~~~~ 97 (156)
T cd01859 79 KERLGTKILRRTIKELAKI 97 (156)
T ss_pred CCCCCHHHHHHHHHHHHCC
T ss_conf 2675799999999986023
No 274
>pfam00350 Dynamin_N Dynamin family.
Probab=98.34 E-value=8.3e-06 Score=58.48 Aligned_cols=64 Identities=27% Similarity=0.340 Sum_probs=42.5
Q ss_pred EEEEEEEECCCCCHHH---HH-HHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHH-CCCCEEEEECCC
Q ss_conf 3899996178730027---99-9999973026899998687886558999999997-099679983267
Q gi|254780321|r 77 DYQLNLIDTPGHVDFT---YE-VSRSLSACEGSLLVVDATQGVEAQTLANVYQAID-NNHEIITVLNKA 140 (606)
Q Consensus 77 ~y~iNlIDTPGH~DF~---~E-V~r~l~a~dgaiLvVdA~~Gvq~QT~~~~~~A~~-~~l~~I~viNKi 140 (606)
...+.||||||..+-. .+ +...+.-+|..|+|++|.+....|-...+....+ .+-..+.|+||-
T Consensus 100 ~~~l~lvDtPGl~s~~~~~~~~t~~~i~~~d~il~V~~a~~~~~~~~~~~l~~~~d~~~~r~i~V~tk~ 168 (168)
T pfam00350 100 VPGLTLVDTPGLDSVAVGDQDLTEEYIKPADIILAVVDANHDLSTSEALFLAREVDPNGKRTIGVLTKD 168 (168)
T ss_pred CCCEEEEECCCCCCCCCCCHHHHHHHHHHCCEEEEEEECCCCHHHHHHHHHHHHHCCCCCEEEEEECCC
T ss_conf 888189827986544433699999998538669999846951666199999997399998389998188
No 275
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=98.32 E-value=1.1e-05 Score=57.53 Aligned_cols=154 Identities=20% Similarity=0.265 Sum_probs=96.8
Q ss_pred EEEEECCCCCCHHHHHHHHHHH-CCC-CCCCCCCCEEECCCHHHHHHC-CEEEEEEEEEEEECCCCCEEEEEEEECCCCC
Q ss_conf 7999801389877889999998-298-054444311305867798719-5052327999974378843899996178730
Q gi|254780321|r 13 NFSIVAHIDHGKSTLADRFIQH-CRG-LTEREMSSQVLDNMDIERERG-ITIKAQTVRLNYTSTDAKDYQLNLIDTPGHV 89 (606)
Q Consensus 13 N~~IiaHvDhGKTTL~d~lL~~-tg~-i~~~~~~~~vlD~~~~EreRG-ITIka~~~~~~~~~~~~~~y~iNlIDTPGH~ 89 (606)
=++++|--+.|||||...|... |+. +++ =+| |||- .++.-++.||++| .
T Consensus 41 vVavvGPpgvGKtTLiksLvk~ytk~~l~~---------------i~GPiTvv-----------s~K~rRiTfiEc~--n 92 (225)
T cd01882 41 VVAVVGPPGVGKTTLIKSLVKNYTKQNISD---------------IKGPITVV-----------TGKKRRLTFIECP--N 92 (225)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCCC---------------CCCCEEEE-----------ECCCEEEEEEECC--C
T ss_conf 999989899778899999999985443755---------------78887999-----------4684268999748--6
Q ss_pred HHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCC-EEEEECCCCCCC--CCCCCHHHHHHHHH--H-HHHH
Q ss_conf 0279999999730268999986878865589999999970996-799832678875--32113388877555--3-2232
Q gi|254780321|r 90 DFTYEVSRSLSACEGSLLVVDATQGVEAQTLANVYQAIDNNHE-IITVLNKADLPS--ADPDRVKKQIEETI--G-ISTE 163 (606)
Q Consensus 90 DF~~EV~r~l~a~dgaiLvVdA~~Gvq~QT~~~~~~A~~~~l~-~I~viNKiD~~~--A~~e~v~~ei~~~~--g-~~~~ 163 (606)
|-.+-+. .-.++|-+||+|||.-|.+-.|.+-+..+..+|+| ++-|++.+|.-. ...-..+..+...| + .+..
T Consensus 93 Di~smiD-~AKvADlVLl~iD~s~GfEmEtfEfLnilq~hG~PkV~GVltHlD~fk~~k~lrk~KK~lk~RFwtE~y~ga 171 (225)
T cd01882 93 DINAMID-IAKVADLVLLLIDASFGFEMETFEFLNILQVHGFPRVMGVLTHLDLFKKNKTLRKTKKRLKHRFWTEVYQGA 171 (225)
T ss_pred HHHHHHH-HHHHHHEEEEEECCCCCEEEEHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 0999987-887643368886166553520899999999759994378854431015578899999999999999865995
Q ss_pred HHHHHHHHCC-----CCCCHHHHHHHHHHHCCCCHHH
Q ss_conf 1000111002-----2320067877632100011112
Q gi|254780321|r 164 DALLVSAKTG-----EGIPLLLERIVQQLPSPTSPEG 195 (606)
Q Consensus 164 ~ii~vSAktG-----~GV~~LLd~Iv~~iP~P~~~~~ 195 (606)
..++-|+... .-|..|.-.|...-+.|...++
T Consensus 172 KlFylsg~~~g~Y~~~Ei~nL~Rfisv~K~rpl~WR~ 208 (225)
T cd01882 172 KLFYLSGIVHGRYPKTEIHNLARFISVMKFRPLNWRN 208 (225)
T ss_pred EEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCCHHC
T ss_conf 6886335324643779999999899714678874213
No 276
>cd03697 EFTU_II EFTU_II: Elongation factor Tu domain II. Elongation factors Tu (EF-Tu) are three-domain GTPases with an essential function in the elongation phase of mRNA translation. The GTPase center of EF-Tu is in the N-terminal domain (domain I), also known as the catalytic or G-domain. The G-domain is composed of about 200 amino acid residues, arranged into a predominantly parallel six-stranded beta-sheet core surrounded by seven a-helices. Non-catalytic domains II and III are beta-barrels of seven and six, respectively, antiparallel beta-strands that share an extended interface. Either non-catalytic domain is composed of about 100 amino acid residues. EF-Tu proteins exist in two principal conformations: in a compact one, EF-Tu*GTP, with tight interfaces between all three domains and a high affinity for aminoacyl-tRNA, and in an open one, EF-Tu*GDP, with essentially no G-domain-domain II interactions and a low affinity for aminoacyl-tRNA. EF-Tu has approximately a 100-fold higher
Probab=98.30 E-value=6.6e-07 Score=65.85 Aligned_cols=84 Identities=17% Similarity=0.281 Sum_probs=64.8
Q ss_pred CCCCCCCEEECCCCCEEEEEEECCCCCCCCCEEEEECCCCCC--CCCCCCCCCCCEEEEHHCCCCC-HHHHHHCCCCCCC
Q ss_conf 331012101147572599998169873558458873355642--1012223355412401012471-2332201100244
Q gi|254780321|r 200 LKALLIDSWYNSYLGVMVLVRIINGQLTKGQSIRLMGTNAKY--QVERIGILTPKMIDIEALYPGE-IGVMIASIKEVSH 276 (606)
Q Consensus 200 l~alVfds~~D~~~G~I~~~RV~sG~lk~Gd~I~~~~~g~~~--~v~~ig~~~~~~~~v~~l~aGd-VG~ii~gik~l~~ 276 (606)
|++.|-+.+.-+..|.|++++|.+|++++||++.++..+... ++..+ ..+..+++++.||| ||..+.|+ +.++
T Consensus 1 F~m~Id~~f~v~G~GtVvtGtv~~G~i~~gd~v~i~~~~~~~~~~V~sI---q~~~~~v~~a~aG~rv~l~l~gi-~~~~ 76 (87)
T cd03697 1 FLMPIEDVFSIPGRGTVVTGRIERGTIKVGDEVEIVGFGETLKTTVTGI---EMFRKTLDEAEAGDNVGVLLRGV-KRED 76 (87)
T ss_pred CEEEEEEEEECCCEEEEEEEEECCCCEECCCEEEEECCCCCCEEEEEEE---HHCCCCCCCCCCCCEEEEEECCC-CHHH
T ss_conf 9736816996698689999995526084799999972899718999990---87194335379867999998588-8898
Q ss_pred CCCCCEECCCC
Q ss_conf 44542000466
Q gi|254780321|r 277 TRVGDTITDDS 287 (606)
Q Consensus 277 ~~vGDTl~~~~ 287 (606)
++.||.||.+.
T Consensus 77 i~rG~vl~~pG 87 (87)
T cd03697 77 VERGMVLAKPG 87 (87)
T ss_pred CCCCCEEECCC
T ss_conf 37703994799
No 277
>KOG0093 consensus
Probab=98.30 E-value=3.4e-05 Score=54.33 Aligned_cols=155 Identities=25% Similarity=0.351 Sum_probs=99.1
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHCCEEEEEEEEEEEECCCCCEEEEEEEECCCCCHHH
Q ss_conf 79998013898778899999982980544443113058677987195052327999974378843899996178730027
Q gi|254780321|r 13 NFSIVAHIDHGKSTLADRFIQHCRGLTEREMSSQVLDNMDIERERGITIKAQTVRLNYTSTDAKDYQLNLIDTPGHVDFT 92 (606)
Q Consensus 13 N~~IiaHvDhGKTTL~d~lL~~tg~i~~~~~~~~vlD~~~~EreRGITIka~~~~~~~~~~~~~~y~iNlIDTPGH~DF~ 92 (606)
-+-|||.--.|||++.=|-+-.+=+. .-..++ ||--|.+++ |.+. +..++-+.||-|..-+.
T Consensus 23 KlliiGnssvGKTSfl~ry~ddSFt~---afvsTv----------GidFKvKTv---yr~~--kRiklQiwDTagqEryr 84 (193)
T KOG0093 23 KLLIIGNSSVGKTSFLFRYADDSFTS---AFVSTV----------GIDFKVKTV---YRSD--KRIKLQIWDTAGQERYR 84 (193)
T ss_pred EEEEECCCCCCCHHHHHHHHCCCCCC---CEEEEE----------EEEEEEEEE---EECC--CEEEEEEEECCCCHHHH
T ss_conf 68997268766213557760655440---004663----------113788676---5146--47788987166510356
Q ss_pred HHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHH----HHCCCCEEEEECCCCCCCCCC---CCHHHHHHHHHHHHHHHH
Q ss_conf 9999999730268999986878865589999999----970996799832678875321---133888775553223210
Q gi|254780321|r 93 YEVSRSLSACEGSLLVVDATQGVEAQTLANVYQA----IDNNHEIITVLNKADLPSADP---DRVKKQIEETIGISTEDA 165 (606)
Q Consensus 93 ~EV~r~l~a~dgaiLvVdA~~Gvq~QT~~~~~~A----~~~~l~~I~viNKiD~~~A~~---e~v~~ei~~~~g~~~~~i 165 (606)
.-...-.+.++|-||.-|.+.-----.+..|--. -..+.++|+|-||+|+++-+. |+. .++.+-+|+ |.
T Consensus 85 tiTTayyRgamgfiLmyDitNeeSf~svqdw~tqIktysw~naqvilvgnKCDmd~eRvis~e~g-~~l~~~LGf---ef 160 (193)
T KOG0093 85 TITTAYYRGAMGFILMYDITNEESFNSVQDWITQIKTYSWDNAQVILVGNKCDMDSERVISHERG-RQLADQLGF---EF 160 (193)
T ss_pred HHHHHHHHCCCEEEEEEECCCHHHHHHHHHHHHHHEEEECCCCEEEEEECCCCCCCCEEEEHHHH-HHHHHHHCH---HH
T ss_conf 77788761464599998547878889899898875034316861899804557743200127888-899998484---77
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHC
Q ss_conf 001110022320067877632100
Q gi|254780321|r 166 LLVSAKTGEGIPLLLERIVQQLPS 189 (606)
Q Consensus 166 i~vSAktG~GV~~LLd~Iv~~iP~ 189 (606)
+..|||.++||+.+++.+++.+--
T Consensus 161 FEtSaK~NinVk~~Fe~lv~~Ic~ 184 (193)
T KOG0093 161 FETSAKENINVKQVFERLVDIICD 184 (193)
T ss_pred HHHCCCCCCCHHHHHHHHHHHHHH
T ss_conf 551330266699999999999987
No 278
>PRK09435 arginine/ornithine transport system ATPase; Provisional
Probab=98.27 E-value=2.5e-06 Score=61.96 Aligned_cols=172 Identities=21% Similarity=0.185 Sum_probs=102.0
Q ss_pred CEEEEEECCCCCCHHHHHHHHHHHCCC---------CCC---CCCCCEEECCC---HHHHHHCCEEEEEEEEEEEEC---
Q ss_conf 317999801389877889999998298---------054---44431130586---779871950523279999743---
Q gi|254780321|r 11 IRNFSIVAHIDHGKSTLADRFIQHCRG---------LTE---REMSSQVLDNM---DIERERGITIKAQTVRLNYTS--- 72 (606)
Q Consensus 11 IRN~~IiaHvDhGKTTL~d~lL~~tg~---------i~~---~~~~~~vlD~~---~~EreRGITIka~~~~~~~~~--- 72 (606)
-.-++|-|--++|||||+|+|....-. |+. ...+.-+=|.. +.-..-++-|.+.+++-..-+
T Consensus 49 a~~iGiTG~pG~GKStli~~l~~~~~~~g~~v~vlavDPsS~~sgGaiLGDr~Rm~~~~~~~~~fiRs~~srg~lgg~~~ 128 (325)
T PRK09435 49 ALRIGITGVPGVGKSTFIEALGMHLIEQGHKVAVLAVDPSSTRTGGSILGDKTRMERLSRHPNAFIRPSPSSGTLGGVAR 128 (325)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCH
T ss_conf 25997427999868899999999999679858999978999988861010388887614799848840677888677335
Q ss_pred --------CCCCEEEEEEEECCCCCHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCC
Q ss_conf --------788438999961787300279999999730268999986878865589999999970996799832678875
Q gi|254780321|r 73 --------TDAKDYQLNLIDTPGHVDFTYEVSRSLSACEGSLLVVDATQGVEAQTLANVYQAIDNNHEIITVLNKADLPS 144 (606)
Q Consensus 73 --------~~~~~y~iNlIDTPGH~DF~~EV~r~l~a~dgaiLvVdA~~Gvq~QT~~~~~~A~~~~l~~I~viNKiD~~~ 144 (606)
++.-.|-+=||.|=|-- ..|+. ...++|..++|.-...|=+-|.. +|--+-+.=++||||.|.++
T Consensus 129 ~~~~~~~~~~a~g~d~i~iETvGvG--Q~e~~-v~~~~d~~~~~~~p~~GD~~Q~~----K~GImEiaDi~vVNKaDgd~ 201 (325)
T PRK09435 129 KTRETMLLCEAAGFDVILVETVGVG--QSETA-VAGMVDFFLLLQLPGAGDELQGI----KKGIMELADLIVINKADGDN 201 (325)
T ss_pred HHHHHHHHHHHCCCCEEEEEECCCC--HHHHH-HHHHCCEEEEEECCCCCCHHHHH----HHHHHHHCCEEEEECCCCCC
T ss_conf 4999999999779998999706777--14889-98742668888358876088998----86577504268997767556
Q ss_pred CC-CCCHHHHHHHHHHHHH-------HHHHHHHHHCCCCCCHHHHHHHHHHHC
Q ss_conf 32-1133888775553223-------210001110022320067877632100
Q gi|254780321|r 145 AD-PDRVKKQIEETIGIST-------EDALLVSAKTGEGIPLLLERIVQQLPS 189 (606)
Q Consensus 145 A~-~e~v~~ei~~~~g~~~-------~~ii~vSAktG~GV~~LLd~Iv~~iP~ 189 (606)
.. -++...++...+.+-+ -.++.|||.+|.||++|.++|-++..-
T Consensus 202 ~~~A~~t~~e~~~aL~l~~~~~~~W~ppVl~~SA~~g~GI~eL~~~I~~h~~~ 254 (325)
T PRK09435 202 HTAARRAAAEYRSALRLLRPKDPGWQPPVLTCSALEGEGIDELWQAIEDHRAA 254 (325)
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHH
T ss_conf 58999999999999860788789999998999815899879999999999999
No 279
>COG3596 Predicted GTPase [General function prediction only]
Probab=98.21 E-value=2.1e-05 Score=55.76 Aligned_cols=157 Identities=22% Similarity=0.251 Sum_probs=90.1
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHCCEEEEEEEEEEEECCCCCEEEEEEEECCCCCHHH
Q ss_conf 79998013898778899999982980544443113058677987195052327999974378843899996178730027
Q gi|254780321|r 13 NFSIVAHIDHGKSTLADRFIQHCRGLTEREMSSQVLDNMDIERERGITIKAQTVRLNYTSTDAKDYQLNLIDTPGHVDFT 92 (606)
Q Consensus 13 N~~IiaHvDhGKTTL~d~lL~~tg~i~~~~~~~~vlD~~~~EreRGITIka~~~~~~~~~~~~~~y~iNlIDTPGH~DF~ 92 (606)
|+-|.|--++|||+|..+|.. |-+..-.... .++.+ ....|...+++ .++|.||||.-|=.
T Consensus 41 nvLi~G~TG~GKSSliNALF~--~~~~~v~~vg--~~t~~-------------~~~~~~~~~~~--~l~lwDtPG~gdg~ 101 (296)
T COG3596 41 NVLLMGATGAGKSSLINALFQ--GEVKEVSKVG--VGTDI-------------TTRLRLSYDGE--NLVLWDTPGLGDGK 101 (296)
T ss_pred EEEEECCCCCCHHHHHHHHHH--CCCCEEEECC--CCCCC-------------HHHHHHHCCCC--CEEEECCCCCCCCH
T ss_conf 589743777768899999970--2673421046--68870-------------15677412665--24884378855320
Q ss_pred -------HHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHH---HHHCCCCEEEEECCCCCCCCCCCC----------HHH
Q ss_conf -------999999973026899998687886558999999---997099679983267887532113----------388
Q gi|254780321|r 93 -------YEVSRSLSACEGSLLVVDATQGVEAQTLANVYQ---AIDNNHEIITVLNKADLPSADPDR----------VKK 152 (606)
Q Consensus 93 -------~EV~r~l~a~dgaiLvVdA~~Gvq~QT~~~~~~---A~~~~l~~I~viNKiD~~~A~~e~----------v~~ 152 (606)
.-+.--|.-.|-.|++++|.+--- ||-+.++. ..-.+.+.|++||..|+.---.+| ..+
T Consensus 102 ~~D~~~r~~~~d~l~~~DLvL~l~~~~draL-~~d~~f~~dVi~~~~~~~~i~~VtQ~D~a~p~~~W~~~~~~p~~a~~q 180 (296)
T COG3596 102 DKDAEHRQLYRDYLPKLDLVLWLIKADDRAL-GTDEDFLRDVIILGLDKRVLFVVTQADRAEPGREWDSAGHQPSPAIKQ 180 (296)
T ss_pred HHHHHHHHHHHHHHHHCCEEEEECCCCCCCC-CCCHHHHHHHHHHCCCCEEEEEEEHHHHHCCCCCCCCCCCCCCHHHHH
T ss_conf 2218999999988632247999614777001-477999999998605760699973665436554300025999878999
Q ss_pred HHHHHH---H--H-HHHHHHHHHHHCCCCCCHHHHHHHHHHHC
Q ss_conf 877555---3--2-23210001110022320067877632100
Q gi|254780321|r 153 QIEETI---G--I-STEDALLVSAKTGEGIPLLLERIVQQLPS 189 (606)
Q Consensus 153 ei~~~~---g--~-~~~~ii~vSAktG~GV~~LLd~Iv~~iP~ 189 (606)
-+++-. + + .-..++.+|+..+.|++.|+.++++.+|.
T Consensus 181 fi~~k~~~~~~~~q~V~pV~~~~~r~~wgl~~l~~ali~~lp~ 223 (296)
T COG3596 181 FIEEKAEALGRLFQEVKPVVAVSGRLPWGLKELVRALITALPV 223 (296)
T ss_pred HHHHHHHHHHHHHHHCCCEEEECCCCCCCHHHHHHHHHHHCCC
T ss_conf 9999999999987631774775254676689999999986731
No 280
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=98.21 E-value=3e-06 Score=61.42 Aligned_cols=136 Identities=25% Similarity=0.278 Sum_probs=85.4
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHCCEEEEEEEEEEEECCCCCEEEEEEEECCCCCHHH
Q ss_conf 79998013898778899999982980544443113058677987195052327999974378843899996178730027
Q gi|254780321|r 13 NFSIVAHIDHGKSTLADRFIQHCRGLTEREMSSQVLDNMDIERERGITIKAQTVRLNYTSTDAKDYQLNLIDTPGHVDFT 92 (606)
Q Consensus 13 N~~IiaHvDhGKTTL~d~lL~~tg~i~~~~~~~~vlD~~~~EreRGITIka~~~~~~~~~~~~~~y~iNlIDTPGH~DF~ 92 (606)
-++.||-++.|||||.-.|- |.-.. - | |.| .+.|+.. + .|||||-- |.
T Consensus 3 ri~~vG~~gcGKTtL~q~L~---G~~~l-y--------------k----KTQ--Ave~~d~----~---~IDTPGEy-~~ 50 (148)
T COG4917 3 RIAFVGQVGCGKTTLFQSLY---GNDTL-Y--------------K----KTQ--AVEFNDK----G---DIDTPGEY-FE 50 (148)
T ss_pred EEEEECCCCCCCHHHHHHHH---CCHHH-H--------------C----CCC--EEECCCC----C---CCCCCHHH-HH
T ss_conf 06875145657316788861---60332-1--------------0----000--1330475----5---65880666-52
Q ss_pred H-HHHHHHHH----CCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCC-CCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 9-99999973----026899998687886558999999997099679983267887-53211338887755532232100
Q gi|254780321|r 93 Y-EVSRSLSA----CEGSLLVVDATQGVEAQTLANVYQAIDNNHEIITVLNKADLP-SADPDRVKKQIEETIGISTEDAL 166 (606)
Q Consensus 93 ~-EV~r~l~a----~dgaiLvVdA~~Gvq~QT~~~~~~A~~~~l~~I~viNKiD~~-~A~~e~v~~ei~~~~g~~~~~ii 166 (606)
. --..+|.+ +|--++|-+|.++-+. +--..+--..-|.|-++.|.|++ .+|++.+...+.+. | +.+++
T Consensus 51 ~~~~Y~aL~tt~~dadvi~~v~~and~~s~---f~p~f~~~~~k~vIgvVTK~DLaed~dI~~~~~~L~ea-G--a~~iF 124 (148)
T COG4917 51 HPRWYHALITTLQDADVIIYVHAANDPESR---FPPGFLDIGVKKVIGVVTKADLAEDADISLVKRWLREA-G--AEPIF 124 (148)
T ss_pred HHHHHHHHHHHHHCCCEEEEEECCCCCCCC---CCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHC-C--CCCEE
T ss_conf 467899998876113325543002684444---88421344666558998603466467689999999974-8--75268
Q ss_pred HHHHHCCCCCCHHHHHHHHH
Q ss_conf 01110022320067877632
Q gi|254780321|r 167 LVSAKTGEGIPLLLERIVQQ 186 (606)
Q Consensus 167 ~vSAktG~GV~~LLd~Iv~~ 186 (606)
..||..+.||++|++.+...
T Consensus 125 ~~s~~d~~gv~~l~~~L~~~ 144 (148)
T COG4917 125 ETSAVDNQGVEELVDYLASL 144 (148)
T ss_pred EEECCCCCCHHHHHHHHHHH
T ss_conf 87255831199999999740
No 281
>cd04090 eEF2_II_snRNP Loc2 eEF2_C_snRNP, cd01514/C terminal domain:eEF2_C_snRNP: This family includes C-terminal portion of the spliceosomal human 116kD U5 small nuclear ribonucleoprotein (snRNP) protein (U5-116 kD) and, its yeast counterpart Snu114p. This domain is homologous to domain II of the eukaryotic translational elongation factor EF-2. Yeast Snu114p is essential for cell viability and for splicing in vivo. U5-116 kD binds GTP. Experiments suggest that GTP binding and probably GTP hydrolysis is important for the function of the U5-116 kD/Snu114p. In complex with GTP, EF-2 promotes the translocation step of translation. During translocation the peptidyl-tRNA is moved from the A site to the P site, the uncharged tRNA from the P site to the E-site and, the mRNA is shifted one codon relative to the ribosome.
Probab=98.20 E-value=1.5e-06 Score=63.37 Aligned_cols=72 Identities=22% Similarity=0.338 Sum_probs=51.4
Q ss_pred CCCCCEEECCC-CCEEEEEEECCCCCCCCCEEEEECCC---------CCCCCCCCCCCCC-CEEEEHHCCCCCHHHHHHC
Q ss_conf 10121011475-72599998169873558458873355---------6421012223355-4124010124712332201
Q gi|254780321|r 202 ALLIDSWYNSY-LGVMVLVRIINGQLTKGQSIRLMGTN---------AKYQVERIGILTP-KMIDIEALYPGEIGVMIAS 270 (606)
Q Consensus 202 alVfds~~D~~-~G~I~~~RV~sG~lk~Gd~I~~~~~g---------~~~~v~~ig~~~~-~~~~v~~l~aGdVG~ii~g 270 (606)
++|.|....+. -.-++++|||||+|++||+|++.+.+ ....+.+++++.+ ...+++++.||++ ++
T Consensus 3 v~v~K~~~~~d~~~F~af~RV~SGtl~~G~~V~Vlg~~y~~~~~~d~~~~~V~~l~l~~Gr~~~~v~~v~AGni----v~ 78 (94)
T cd04090 3 VHVTKLYSTSDGGSFWAFGRIYSGTIKKGQKVKVLGENYSLDDEEDMTICTIGRLWILGGRYKIEVNEAPAGNW----VL 78 (94)
T ss_pred EEEEEECCCCCCCEEEEEEEEEEEEECCCCEEEEECCCCCCCCCCCCEEEEEEEEEEECCCEEEECCCCCCCCE----EE
T ss_conf 99986111499988999999988678489999997999898985410498966899962114879782699889----99
Q ss_pred CCCCCCC
Q ss_conf 1002444
Q gi|254780321|r 271 IKEVSHT 277 (606)
Q Consensus 271 ik~l~~~ 277 (606)
+.++++.
T Consensus 79 I~Gld~~ 85 (94)
T cd04090 79 IKGIDSS 85 (94)
T ss_pred EECCCCC
T ss_conf 9824003
No 282
>KOG0086 consensus
Probab=98.20 E-value=7.8e-05 Score=51.93 Aligned_cols=158 Identities=27% Similarity=0.360 Sum_probs=94.3
Q ss_pred HHCEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHCCEEEEEEEEEEEECCCCCEEEEEEEECCCC
Q ss_conf 25317999801389877889999998298054444311305867798719505232799997437884389999617873
Q gi|254780321|r 9 SRIRNFSIVAHIDHGKSTLADRFIQHCRGLTEREMSSQVLDNMDIERERGITIKAQTVRLNYTSTDAKDYQLNLIDTPGH 88 (606)
Q Consensus 9 ~~IRN~~IiaHvDhGKTTL~d~lL~~tg~i~~~~~~~~vlD~~~~EreRGITIka~~~~~~~~~~~~~~y~iNlIDTPGH 88 (606)
+-.=.|.+||..+.|||-|.-++++. .+++ +...++ ||-.-|.-++ ..++..++-+.||.|.
T Consensus 7 DyLfKfl~iG~aGtGKSCLLh~Fie~--kfkD-dssHTi----------GveFgSrIin-----VGgK~vKLQIWDTAGQ 68 (214)
T KOG0086 7 DYLFKFLVIGSAGTGKSCLLHQFIEN--KFKD-DSSHTI----------GVEFGSRIVN-----VGGKTVKLQIWDTAGQ 68 (214)
T ss_pred HHHHEEEEECCCCCCHHHHHHHHHHH--HCCC-CCCCEE----------EEEECCCEEE-----ECCCEEEEEEEECCCH
T ss_conf 24302688646888632799999986--4136-546442----------0220110254-----0571899998634257
Q ss_pred CHHHHHHHHH-HHHCCEEEEEEECCCCCCHHHHHHHH-HHHHC---CCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 0027999999-97302689999868788655899999-99970---9967998326788753211338887755532232
Q gi|254780321|r 89 VDFTYEVSRS-LSACEGSLLVVDATQGVEAQTLANVY-QAIDN---NHEIITVLNKADLPSADPDRVKKQIEETIGISTE 163 (606)
Q Consensus 89 ~DF~~EV~r~-l~a~dgaiLvVdA~~Gvq~QT~~~~~-~A~~~---~l~~I~viNKiD~~~A~~e~v~~ei~~~~g~~~~ 163 (606)
..|.. |.|+ .+.+-||+||-|++.----....+|. -|..+ ++-+|.+=||-|+.+++-- ...|-.+ +..+
T Consensus 69 ErFRS-VtRsYYRGAAGAlLVYD~TsrdsfnaLtnWL~DaR~lAs~nIvviL~GnKkDL~~~R~V-tflEAs~---FaqE 143 (214)
T KOG0086 69 ERFRS-VTRSYYRGAAGALLVYDITSRDSFNALTNWLTDARTLASPNIVVILCGNKKDLDPEREV-TFLEASR---FAQE 143 (214)
T ss_pred HHHHH-HHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHCCHHHHH-HHHHHHH---HHCC
T ss_conf 88999-99987536564279985245556999999888777647996799993771214412100-3899886---6330
Q ss_pred H---HHHHHHHCCCCCCHHHH----HHHHHHHC
Q ss_conf 1---00011100223200678----77632100
Q gi|254780321|r 164 D---ALLVSAKTGEGIPLLLE----RIVQQLPS 189 (606)
Q Consensus 164 ~---ii~vSAktG~GV~~LLd----~Iv~~iP~ 189 (606)
+ .+..||+||.||++-+- .|+.++..
T Consensus 144 nel~flETSa~TGeNVEEaFl~c~~tIl~kIE~ 176 (214)
T KOG0086 144 NELMFLETSALTGENVEEAFLKCARTILNKIES 176 (214)
T ss_pred CCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 311112202323556899999999999988870
No 283
>pfam03029 ATP_bind_1 Conserved hypothetical ATP binding protein. Members of this family are found in a range of archaea and eukaryotes and have hypothesized ATP binding activity.
Probab=98.20 E-value=5.4e-06 Score=59.71 Aligned_cols=107 Identities=26% Similarity=0.344 Sum_probs=63.6
Q ss_pred EEEEEEEECCCCCHH------HHHHHHHHHH-CCEEEEEEECCCCCCHHHH-HHHHHH----HHCCCCEEEEECCCCCCC
Q ss_conf 389999617873002------7999999973-0268999986878865589-999999----970996799832678875
Q gi|254780321|r 77 DYQLNLIDTPGHVDF------TYEVSRSLSA-CEGSLLVVDATQGVEAQTL-ANVYQA----IDNNHEIITVLNKADLPS 144 (606)
Q Consensus 77 ~y~iNlIDTPGH~DF------~~EV~r~l~a-~dgaiLvVdA~~Gvq~QT~-~~~~~A----~~~~l~~I~viNKiD~~~ 144 (606)
+|. |+||||...| .....+.|.. -=+++.++|+.-=-.|.+. +++..| ...++|.|.|+||+|+-.
T Consensus 91 ~y~--l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~v~l~D~~~~~d~~~fis~~L~a~s~m~~l~lP~vnvlsK~Dl~~ 168 (234)
T pfam03029 91 DYY--LFDTPGQIELFTHWDSLARGVEALEASRLGAVYLVDTRRLTDPIDFFSGLLYALSIMLRLGLPFVVALNKFDLLS 168 (234)
T ss_pred CEE--EEECCCCEEEEECCHHHHHHHHHHHCCCEEEEEEECHHHHCCHHHHHHHHHHHHHHHHHCCCCEEEEECCHHCCC
T ss_conf 769--983698357654002699999997128738999842577468888999999999999974899443100041354
Q ss_pred CCC--------CC-----------HHHHHHHHHH-HHHH-HHHHHHHHCCCCCCHHHHHHHH
Q ss_conf 321--------13-----------3888775553-2232-1000111002232006787763
Q gi|254780321|r 145 ADP--------DR-----------VKKQIEETIG-ISTE-DALLVSAKTGEGIPLLLERIVQ 185 (606)
Q Consensus 145 A~~--------e~-----------v~~ei~~~~g-~~~~-~ii~vSAktG~GV~~LLd~Iv~ 185 (606)
.+. +. .-+.+.++++ +.-- ..++.|++++.|++.|+..|-+
T Consensus 169 ~~~~l~~~~d~~~l~~~l~~~~~~L~~~l~~lledf~lv~~f~~ls~~~~~s~~~ll~~ID~ 230 (234)
T pfam03029 169 LEFALKWFTDPDDLQLLLELDYRYLNEAIRLALDLFYLVPRFLCDARETGESMEDLLTLIDE 230 (234)
T ss_pred CHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCHHHHHHHHHHHHH
T ss_conf 24457775287889888788799999999999987257366146568860279999999887
No 284
>KOG0075 consensus
Probab=98.19 E-value=5.1e-06 Score=59.91 Aligned_cols=149 Identities=21% Similarity=0.285 Sum_probs=100.0
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHCCEEEEEEEEEEEECCCCCEEEEEEEECCCCCHHHH
Q ss_conf 99980138987788999999829805444431130586779871950523279999743788438999961787300279
Q gi|254780321|r 14 FSIVAHIDHGKSTLADRFIQHCRGLTEREMSSQVLDNMDIERERGITIKAQTVRLNYTSTDAKDYQLNLIDTPGHVDFTY 93 (606)
Q Consensus 14 ~~IiaHvDhGKTTL~d~lL~~tg~i~~~~~~~~vlD~~~~EreRGITIka~~~~~~~~~~~~~~y~iNlIDTPGH~DF~~ 93 (606)
+.++|-..+||||++-.. .+|...+ ++ -+.+|.- + |+..+ .+..|-+-|-||..-|-.
T Consensus 23 l~lvGLq~sGKtt~Vnvi--a~g~~~e-dm----------iptvGfn-------m-rkvtk-gnvtik~wD~gGq~rfrs 80 (186)
T KOG0075 23 LSLVGLQNSGKTTLVNVI--ARGQYLE-DM----------IPTVGFN-------M-RKVTK-GNVTIKLWDLGGQPRFRS 80 (186)
T ss_pred EEEEEECCCCCCEEEEEE--ECCCCHH-HH----------CCCCCCE-------E-EEECC-CCEEEEEEECCCCCCHHH
T ss_conf 888853247852588887--5067456-64----------3024632-------6-88315-836999983699760888
Q ss_pred HHHHHHHHCCEEEEEEECCCCCCHHH--HHH----HHHHHHCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHH---HHHH
Q ss_conf 99999973026899998687886558--999----99999709967998326788753211338887755532---2321
Q gi|254780321|r 94 EVSRSLSACEGSLLVVDATQGVEAQT--LAN----VYQAIDNNHEIITVLNKADLPSADPDRVKKQIEETIGI---STED 164 (606)
Q Consensus 94 EV~r~l~a~dgaiLvVdA~~Gvq~QT--~~~----~~~A~~~~l~~I~viNKiD~~~A~~e~v~~ei~~~~g~---~~~~ 164 (606)
-=+|--+.|+..+.+|||.+ +.--| +.- ++...-.|+|.++.=||+|+|+|--+ .++-+.+|+ .+-|
T Consensus 81 mWerycR~v~aivY~VDaad-~~k~~~sR~EL~~LL~k~~l~gip~LVLGnK~d~~~AL~~---~~li~rmgL~sitdRE 156 (186)
T KOG0075 81 MWERYCRGVSAIVYVVDAAD-PDKLEASRSELHDLLDKPSLTGIPLLVLGNKIDLPGALSK---IALIERMGLSSITDRE 156 (186)
T ss_pred HHHHHHCCCCEEEEEEECCC-CCCCHHHHHHHHHHHCCHHHCCCCEEEECCCCCCCCCCCH---HHHHHHHCCCCCCCCE
T ss_conf 99998603868999961678-6534312999998850321148717996255667553227---8999983845244645
Q ss_pred H--HHHHHHCCCCCCHHHHHHHHHHH
Q ss_conf 0--00111002232006787763210
Q gi|254780321|r 165 A--LLVSAKTGEGIPLLLERIVQQLP 188 (606)
Q Consensus 165 i--i~vSAktG~GV~~LLd~Iv~~iP 188 (606)
+ +.+|+|.-.+|+.+++-++++--
T Consensus 157 vcC~siScke~~Nid~~~~Wli~hsk 182 (186)
T KOG0075 157 VCCFSISCKEKVNIDITLDWLIEHSK 182 (186)
T ss_pred EEEEEEEECCCCCHHHHHHHHHHHHH
T ss_conf 78999987687568999999999767
No 285
>TIGR00750 lao LAO/AO transport system ATPase; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli K-12, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase..
Probab=98.19 E-value=6.7e-06 Score=59.09 Aligned_cols=172 Identities=20% Similarity=0.255 Sum_probs=101.2
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHC---C----C--CCCC---C----CCCEE-ECCCH----HHHHHCCEEEEEEEEEEE
Q ss_conf 179998013898778899999982---9----8--0544---4----43113-05867----798719505232799997
Q gi|254780321|r 12 RNFSIVAHIDHGKSTLADRFIQHC---R----G--LTER---E----MSSQV-LDNMD----IERERGITIKAQTVRLNY 70 (606)
Q Consensus 12 RN~~IiaHvDhGKTTL~d~lL~~t---g----~--i~~~---~----~~~~v-lD~~~----~EreRGITIka~~~~~~~ 70 (606)
.=++|-|--+.|||||.|+|.... | . |+.. . .++++ |+.++ +=..-|+=|.|-+++=..
T Consensus 39 ~~vG~TG~PGaGKSTl~~~l~~~lrRrG~~VaViAvDP~SPfTGGsiLGDr~Rm~~~asrkqlW~dPg~FIRs~ptrG~l 118 (333)
T TIGR00750 39 HVVGITGVPGAGKSTLVEKLIMELRRRGLKVAVIAVDPSSPFTGGSILGDRLRMQRLASRKQLWTDPGVFIRSMPTRGSL 118 (333)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEECCCCCCCCH
T ss_conf 78766468888577799999899976597689998879759755145456887754422223322898567677666752
Q ss_pred EC--CCCCEEEEEEEECCCCCH---------HHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf 43--788438999961787300---------2799999997302689999868788655899999999709967998326
Q gi|254780321|r 71 TS--TDAKDYQLNLIDTPGHVD---------FTYEVSRSLSACEGSLLVVDATQGVEAQTLANVYQAIDNNHEIITVLNK 139 (606)
Q Consensus 71 ~~--~~~~~y~iNlIDTPGH~D---------F~~EV~r~l~a~dgaiLvVdA~~Gvq~QT~~~~~~A~~~~l~~I~viNK 139 (606)
-+ ....+ .+.|+|.=|| | =..||. ..+++|..|+|-=|-.|=+-|+. +|=-+-+-=|.||||
T Consensus 119 GGls~at~~-~~~lldA~G~-DVI~vETVGVGQSEVd-i~~~aDT~v~v~~pg~GDd~Q~i----KaG~mEiaDI~VVNK 191 (333)
T TIGR00750 119 GGLSKATRE-LVKLLDAAGY-DVILVETVGVGQSEVD-IINMADTFVVVTIPGTGDDVQGI----KAGVMEIADIYVVNK 191 (333)
T ss_pred HHHHHHHHH-HHHHHHHCCC-CEEEEEEECCCHHHHH-HHHHHCEEEEEECCCCCCHHHHH----HHHHHEEEEEEEEEC
T ss_conf 578799999-9999986389-8799984157524878-87341505898548878346666----544302324878816
Q ss_pred CCCCCCCC-CCHHHHHHHH-HH--------HHHH------------------HHHHHHHHCCCCCCHHHHHHHHHHHCC
Q ss_conf 78875321-1338887755-53--------2232------------------100011100223200678776321000
Q gi|254780321|r 140 ADLPSADP-DRVKKQIEET-IG--------ISTE------------------DALLVSAKTGEGIPLLLERIVQQLPSP 190 (606)
Q Consensus 140 iD~~~A~~-e~v~~ei~~~-~g--------~~~~------------------~ii~vSAktG~GV~~LLd~Iv~~iP~P 190 (606)
=|+++|+- .+...-..++ .. ..++ .++.+||.+|.||++|.|+|.+|.-.-
T Consensus 192 aD~~~a~~v~~~a~~~l~l~~esvqmlsqmthadearvq~G~~~~r~~gW~Ppv~~tsA~~G~Gi~EL~daI~eH~~~l 270 (333)
T TIGR00750 192 ADGEGAEEVKTLARLMLALDLESVQMLSQMTHADEARVQKGEIYRREKGWRPPVLKTSAVEGRGIDELWDAIEEHKKFL 270 (333)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHH
T ss_conf 8876658999999998888888999998653333444302655110105899638873356887167899999999999
No 286
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.17 E-value=1.1e-05 Score=57.54 Aligned_cols=100 Identities=27% Similarity=0.323 Sum_probs=71.4
Q ss_pred CCCCH-HHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 87300-27999999973026899998687886558999999997099679983267887532113388877555322321
Q gi|254780321|r 86 PGHVD-FTYEVSRSLSACEGSLLVVDATQGVEAQTLANVYQAIDNNHEIITVLNKADLPSADPDRVKKQIEETIGISTED 164 (606)
Q Consensus 86 PGH~D-F~~EV~r~l~a~dgaiLvVdA~~Gvq~QT~~~~~~A~~~~l~~I~viNKiD~~~A~~e~v~~ei~~~~g~~~~~ 164 (606)
|||.- ..-++...+..+|-.|.|+||..|.-..-..... .+ .+-++|+|+||+|+-.. ...++..+.+.....+
T Consensus 3 pghm~k~~~~~~~~l~~sDlIl~V~DaR~pl~~~~~~l~~-~~-~~K~~ilV~NK~DL~~~---~~~~~~~~~~~~~~~~ 77 (171)
T cd01856 3 PGHMAKALRQIKEKLKLVDLVIEVRDARIPLSSRNPLLEK-IL-GNKPRIIVLNKADLADP---KKTKKWLKYFESKGEK 77 (171)
T ss_pred CHHHHHHHHHHHHHHHHCCEEEEEEECCCCCCCCCHHHHH-HH-CCCCEEEEEECCCCCCH---HHHHHHHHHHHCCCCC
T ss_conf 5489999999999998699999999898888765289999-97-68988999855555897---8999999999807996
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHCC
Q ss_conf 00011100223200678776321000
Q gi|254780321|r 165 ALLVSAKTGEGIPLLLERIVQQLPSP 190 (606)
Q Consensus 165 ii~vSAktG~GV~~LLd~Iv~~iP~P 190 (606)
++++||+.+.|+..|++.+.+..+..
T Consensus 78 ~~~~sa~~~~g~~~l~~~i~~~~~~~ 103 (171)
T cd01856 78 VLFVNAKSGKGVKKLLKAAKKLLKDI 103 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHH
T ss_conf 79984226657899999999973544
No 287
>KOG0095 consensus
Probab=98.15 E-value=0.00017 Score=49.63 Aligned_cols=155 Identities=26% Similarity=0.290 Sum_probs=97.7
Q ss_pred CEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHCCEEE----EEEEEEEEECCCCCEEEEEEEECC
Q ss_conf 3179998013898778899999982980544443113058677987195052----327999974378843899996178
Q gi|254780321|r 11 IRNFSIVAHIDHGKSTLADRFIQHCRGLTEREMSSQVLDNMDIERERGITIK----AQTVRLNYTSTDAKDYQLNLIDTP 86 (606)
Q Consensus 11 IRN~~IiaHvDhGKTTL~d~lL~~tg~i~~~~~~~~vlD~~~~EreRGITIk----a~~~~~~~~~~~~~~y~iNlIDTP 86 (606)
.=.+.++|..+-|||-|+-|+- -|.+.... |-||- -+++. .++++.++-+.||.
T Consensus 7 lfkivlvgnagvgktclvrrft--qglfppgq---------------gatigvdfmiktve-----v~gekiklqiwdta 64 (213)
T KOG0095 7 LFKIVLVGNAGVGKTCLVRRFT--QGLFPPGQ---------------GATIGVDFMIKTVE-----VNGEKIKLQIWDTA 64 (213)
T ss_pred EEEEEEECCCCCCCCHHHHHHH--CCCCCCCC---------------CCEEEEEEEEEEEE-----ECCEEEEEEEEECC
T ss_conf 6789997357767330044552--26789998---------------76642337999999-----87808999984132
Q ss_pred CCCHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHH--CC--CCEEEEECCCCCCCCCCCCHHHHHHHHH-HHH
Q ss_conf 730027999999973026899998687886558999999997--09--9679983267887532113388877555-322
Q gi|254780321|r 87 GHVDFTYEVSRSLSACEGSLLVVDATQGVEAQTLANVYQAID--NN--HEIITVLNKADLPSADPDRVKKQIEETI-GIS 161 (606)
Q Consensus 87 GH~DF~~EV~r~l~a~dgaiLvVdA~~Gvq~QT~~~~~~A~~--~~--l~~I~viNKiD~~~A~~e~v~~ei~~~~-g~~ 161 (606)
|...|..-...-.+.+..-+||-|-+--+----.-.|..-++ .+ +--|.|=||+|+ +|-.+|-+||-+-| +..
T Consensus 65 gqerfrsitqsyyrsahalilvydiscqpsfdclpewlreie~yan~kvlkilvgnk~d~--~drrevp~qigeefs~~q 142 (213)
T KOG0095 65 GQERFRSITQSYYRSAHALILVYDISCQPSFDCLPEWLREIEQYANNKVLKILVGNKIDL--ADRREVPQQIGEEFSEAQ 142 (213)
T ss_pred CHHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHCCEEEEEECCCCCH--HHHHHHHHHHHHHHHHHH
T ss_conf 568888889988641164899985345743101399999999985064278761466561--233330588878887755
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHC
Q ss_conf 3210001110022320067877632100
Q gi|254780321|r 162 TEDALLVSAKTGEGIPLLLERIVQQLPS 189 (606)
Q Consensus 162 ~~~ii~vSAktG~GV~~LLd~Iv~~iP~ 189 (606)
..-.+..|||...+|+.|+..+..++-+
T Consensus 143 dmyfletsakea~nve~lf~~~a~rli~ 170 (213)
T KOG0095 143 DMYFLETSAKEADNVEKLFLDLACRLIS 170 (213)
T ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHHH
T ss_conf 5665320200010399999999999988
No 288
>KOG0087 consensus
Probab=98.12 E-value=5.1e-05 Score=53.15 Aligned_cols=161 Identities=24% Similarity=0.301 Sum_probs=98.3
Q ss_pred CHHHCEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHCCEEEEEEEEEEEECCCCCEEEEEEEECC
Q ss_conf 85253179998013898778899999982980544443113058677987195052327999974378843899996178
Q gi|254780321|r 7 PLSRIRNFSIVAHIDHGKSTLADRFIQHCRGLTEREMSSQVLDNMDIERERGITIKAQTVRLNYTSTDAKDYQLNLIDTP 86 (606)
Q Consensus 7 p~~~IRN~~IiaHvDhGKTTL~d~lL~~tg~i~~~~~~~~vlD~~~~EreRGITIka~~~~~~~~~~~~~~y~iNlIDTP 86 (606)
..+..=-+.+||-..-|||-|..|+.. ..+. .+.+.++ |+....+++. .+++..+..|.||-
T Consensus 10 ~~dylFKiVliGDS~VGKsnLlsRftr--nEF~-~~SksTI----------Gvef~t~t~~-----vd~k~vkaqIWDTA 71 (222)
T KOG0087 10 EYDYLFKIVLIGDSAVGKSNLLSRFTR--NEFS-LESKSTI----------GVEFATRTVN-----VDGKTVKAQIWDTA 71 (222)
T ss_pred CCCEEEEEEEECCCCCCHHHHHHHHCC--CCCC-CCCCCCE----------EEEEEEEEEE-----ECCCEEEEEEECCC
T ss_conf 455378999957876553677877433--5467-5666624----------6887750023-----56817887653261
Q ss_pred CCCHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHH-HH---CCCCEEEEECCCCCCCCC--CCCHHHHHHHHHHH
Q ss_conf 7300279999999730268999986878865589999999-97---099679983267887532--11338887755532
Q gi|254780321|r 87 GHVDFTYEVSRSLSACEGSLLVVDATQGVEAQTLANVYQA-ID---NNHEIITVLNKADLPSAD--PDRVKKQIEETIGI 160 (606)
Q Consensus 87 GH~DF~~EV~r~l~a~dgaiLvVdA~~Gvq~QT~~~~~~A-~~---~~l~~I~viNKiD~~~A~--~e~v~~ei~~~~g~ 160 (606)
|..-|..-.+.--+-+=|||||-|-+.-..=+-+..|..- ++ .++.+++|=||.|+.+.+ +.+......+.
T Consensus 72 GQERyrAitSaYYrgAvGAllVYDITr~~Tfenv~rWL~ELRdhad~nIvimLvGNK~DL~~lraV~te~~k~~Ae~--- 148 (222)
T KOG0087 72 GQERYRAITSAYYRGAVGALLVYDITRRQTFENVERWLKELRDHADSNIVIMLVGNKSDLNHLRAVPTEDGKAFAEK--- 148 (222)
T ss_pred CHHHHCCCCCHHHCCCCEEEEEEECHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCHHHHHCCCCCHHHHHHHHHH---
T ss_conf 14565001112213440369999504677888899999999855887717999612204543346445665668975---
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q ss_conf 2321000111002232006787763210
Q gi|254780321|r 161 STEDALLVSAKTGEGIPLLLERIVQQLP 188 (606)
Q Consensus 161 ~~~~ii~vSAktG~GV~~LLd~Iv~~iP 188 (606)
..--.+.+||..+.+|+..++.++..|-
T Consensus 149 ~~l~f~EtSAl~~tNVe~aF~~~l~~I~ 176 (222)
T KOG0087 149 EGLFFLETSALDATNVEKAFERVLTEIY 176 (222)
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHH
T ss_conf 2854787003444328899999999999
No 289
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=98.12 E-value=1.2e-05 Score=57.46 Aligned_cols=168 Identities=23% Similarity=0.267 Sum_probs=93.9
Q ss_pred EEEEECCCCCCHHHHHHHHHHHC---CC------CCC--CCCCCEEE-CCCHHH---HHHCCEEEEEEEEEEE-------
Q ss_conf 79998013898778899999982---98------054--44431130-586779---8719505232799997-------
Q gi|254780321|r 13 NFSIVAHIDHGKSTLADRFIQHC---RG------LTE--REMSSQVL-DNMDIE---RERGITIKAQTVRLNY------- 70 (606)
Q Consensus 13 N~~IiaHvDhGKTTL~d~lL~~t---g~------i~~--~~~~~~vl-D~~~~E---reRGITIka~~~~~~~------- 70 (606)
-++|-|--++|||||.|+|.... |. |+. .-.+..+| |..-.. ..-|+=|.|.+.+=..
T Consensus 53 viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGDRiRM~~~~~~~~vFiRs~~srG~lGGlS~at 132 (323)
T COG1703 53 VIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGDRIRMQRLAVDPGVFIRSSPSRGTLGGLSRAT 132 (323)
T ss_pred EEEECCCCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCHHHHHHHCCCCCEEEEECCCCCCCHHHHHHH
T ss_conf 78731799886688999999999977967899998899998785301207667764469981784268776510166889
Q ss_pred ----ECCCCCEEEEEEEECCCCCHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCC
Q ss_conf ----4378843899996178730027999999973026899998687886558999999997099679983267887532
Q gi|254780321|r 71 ----TSTDAKDYQLNLIDTPGHVDFTYEVSRSLSACEGSLLVVDATQGVEAQTLANVYQAIDNNHEIITVLNKADLPSAD 146 (606)
Q Consensus 71 ----~~~~~~~y~iNlIDTPGH~DF~~EV~r~l~a~dgaiLvVdA~~Gvq~QT~~~~~~A~~~~l~~I~viNKiD~~~A~ 146 (606)
.-++.-.|-+=||.|-|-- .+||. ...++|..++|.-.--|=+-|... +--+.+-=|+||||.|+++|+
T Consensus 133 ~~~i~~ldAaG~DvIIVETVGvG--Qsev~-I~~~aDt~~~v~~pg~GD~~Q~iK----~GimEiaDi~vINKaD~~~A~ 205 (323)
T COG1703 133 REAIKLLDAAGYDVIIVETVGVG--QSEVD-IANMADTFLVVMIPGAGDDLQGIK----AGIMEIADIIVINKADRKGAE 205 (323)
T ss_pred HHHHHHHHHCCCCEEEEEECCCC--CCHHH-HHHHCCEEEEEECCCCCCHHHHHH----HHHHHHHHEEEEECCCHHHHH
T ss_conf 99999998618988999814788--41557-765216689996578882788887----414654033567256726589
Q ss_pred CCCHHHHHHHHHHHHH---------HHHHHHHHHCCCCCCHHHHHHHHHHHC
Q ss_conf 1133888775553223---------210001110022320067877632100
Q gi|254780321|r 147 PDRVKKQIEETIGIST---------EDALLVSAKTGEGIPLLLERIVQQLPS 189 (606)
Q Consensus 147 ~e~v~~ei~~~~g~~~---------~~ii~vSAktG~GV~~LLd~Iv~~iP~ 189 (606)
....++...+.+.. -.++-+||.+|.|+++|.++|.++.--
T Consensus 206 --~a~r~l~~al~~~~~~~~~~~W~ppv~~t~A~~g~Gi~~L~~ai~~h~~~ 255 (323)
T COG1703 206 --KAARELRSALDLLREVWRENGWRPPVVTTSALEGEGIDELWDAIEDHRKF 255 (323)
T ss_pred --HHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHH
T ss_conf --99999999997511454236888864676413577879999999999999
No 290
>KOG0070 consensus
Probab=98.11 E-value=1.9e-05 Score=56.01 Aligned_cols=154 Identities=21% Similarity=0.263 Sum_probs=95.9
Q ss_pred HHCEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHCCEEEEEEEEEEEECCCCCEEEEEEEECCCC
Q ss_conf 25317999801389877889999998298054444311305867798719505232799997437884389999617873
Q gi|254780321|r 9 SRIRNFSIVAHIDHGKSTLADRFIQHCRGLTEREMSSQVLDNMDIERERGITIKAQTVRLNYTSTDAKDYQLNLIDTPGH 88 (606)
Q Consensus 9 ~~IRN~~IiaHvDhGKTTL~d~lL~~tg~i~~~~~~~~vlD~~~~EreRGITIka~~~~~~~~~~~~~~y~iNlIDTPGH 88 (606)
++=..|-++|=-.+||||+ ||.-+. .+...+ ==||-.+.-.+.| +++.+++.|.=|+
T Consensus 15 ~~e~~IlmvGLD~AGKTTI----Lyklk~---~E~vtt-----------vPTiGfnVE~v~y-----kn~~f~vWDvGGq 71 (181)
T KOG0070 15 KKEMRILMVGLDAAGKTTI----LYKLKL---GEIVTT-----------VPTIGFNVETVEY-----KNISFTVWDVGGQ 71 (181)
T ss_pred CCEEEEEEEECCCCCCCEE----EEECCC---CCCCCC-----------CCCCCCCEEEEEE-----CCEEEEEEECCCC
T ss_conf 6467999996168986015----675025---874147-----------7864531369998-----6618999815887
Q ss_pred CHHHHHHHHHHHHCCEEEEEEECCCCC---CHHHHHHHHHHHH--CCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHH-
Q ss_conf 002799999997302689999868788---6558999999997--0996799832678875321133888775553223-
Q gi|254780321|r 89 VDFTYEVSRSLSACEGSLLVVDATQGV---EAQTLANVYQAID--NNHEIITVLNKADLPSADPDRVKKQIEETIGIST- 162 (606)
Q Consensus 89 ~DF~~EV~r~l~a~dgaiLvVdA~~Gv---q~QT~~~~~~A~~--~~l~~I~viNKiD~~~A~~e~v~~ei~~~~g~~~- 162 (606)
.-+.-==.....-++|.|+|||+++-- +++..-+..++.. .+.+++++-||.|+|+|-. ..+|.+.+++..
T Consensus 72 ~k~R~lW~~Y~~nt~~lIfVvDS~Dr~Ri~eak~eL~~~l~~~~l~~~~llv~aNKqD~~~als---~~ei~~~L~l~~l 148 (181)
T KOG0070 72 EKLRPLWKHYFQNTQGLIFVVDSSDRERIEEAKEELHRMLAEPELRNAPLLVFANKQDLPGALS---AAEITNKLGLHSL 148 (181)
T ss_pred CCCCCCHHHHCCCCCEEEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEECHHHCCCCCC---HHHHHHHHHHHCC
T ss_conf 3545313532037727999981773888999999999997683447736999842120424578---8898867433014
Q ss_pred ----HHHHHHHHHCCCCCCHHHHHHHHHHH
Q ss_conf ----21000111002232006787763210
Q gi|254780321|r 163 ----EDALLVSAKTGEGIPLLLERIVQQLP 188 (606)
Q Consensus 163 ----~~ii~vSAktG~GV~~LLd~Iv~~iP 188 (606)
..+-.++|.+|.|+.+-||-+.+.+.
T Consensus 149 ~~~~w~iq~~~a~~G~GL~egl~wl~~~~~ 178 (181)
T KOG0070 149 RSRNWHIQSTCAISGEGLYEGLDWLSNNLK 178 (181)
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHHHH
T ss_conf 688728953013565448999999999863
No 291
>KOG0090 consensus
Probab=98.11 E-value=1.7e-05 Score=56.34 Aligned_cols=119 Identities=24% Similarity=0.376 Sum_probs=72.4
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHCCEEEEEEEEEEEECCCCCEEEEEEEECCCCCHH
Q ss_conf 17999801389877889999998298054444311305867798719505232799997437884389999617873002
Q gi|254780321|r 12 RNFSIVAHIDHGKSTLADRFIQHCRGLTEREMSSQVLDNMDIERERGITIKAQTVRLNYTSTDAKDYQLNLIDTPGHVDF 91 (606)
Q Consensus 12 RN~~IiaHvDhGKTTL~d~lL~~tg~i~~~~~~~~vlD~~~~EreRGITIka~~~~~~~~~~~~~~y~iNlIDTPGH~DF 91 (606)
+-+-++|--|+|||+|--+|+ +|. .+. ++. +|.-+. ..|...+|. ..|||-|||.--
T Consensus 39 ~~Vll~Gl~dSGKT~LF~qL~--~gs--~~~---Tvt-----------Siepn~--a~~r~gs~~---~~LVD~PGH~rl 95 (238)
T KOG0090 39 NAVLLVGLSDSGKTSLFTQLI--TGS--HRG---TVT-----------SIEPNE--ATYRLGSEN---VTLVDLPGHSRL 95 (238)
T ss_pred CCEEEEECCCCCCEEEEEEHH--CCC--CCC---EEE-----------EECCCE--EEEEECCCC---EEEEECCCCHHH
T ss_conf 868999327898335542001--387--367---032-----------104661--357636862---388757995889
Q ss_pred HHHHHHHHH---HCCEEEEEEECCCCCC-HHHHHHH-H-H---H--HHCCCCEEEEECCCCCCCCCCCCHHHH
Q ss_conf 799999997---3026899998687886-5589999-9-9---9--970996799832678875321133888
Q gi|254780321|r 92 TYEVSRSLS---ACEGSLLVVDATQGVE-AQTLANV-Y-Q---A--IDNNHEIITVLNKADLPSADPDRVKKQ 153 (606)
Q Consensus 92 ~~EV~r~l~---a~dgaiLvVdA~~Gvq-~QT~~~~-~-~---A--~~~~l~~I~viNKiD~~~A~~e~v~~e 153 (606)
-.-.+.-+. -+-+.+.|||+..=.. .-+.+-+ | . + ..++.+++++-||-|+-.|.+.+++++
T Consensus 96 R~kl~e~~~~~~~akaiVFVVDSa~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~tAkt~~~Ir~ 168 (238)
T KOG0090 96 RRKLLEYLKHNYSAKAIVFVVDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFTAKTAEKIRQ 168 (238)
T ss_pred HHHHHHHCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCHHHHHCCCHHHHHH
T ss_conf 9999987346552215999983322460067999999999986012347998899955522321385999999
No 292
>KOG1191 consensus
Probab=98.10 E-value=6e-05 Score=52.72 Aligned_cols=14 Identities=7% Similarity=-0.209 Sum_probs=8.3
Q ss_pred CCEEEEEEEECCCC
Q ss_conf 84389999617873
Q gi|254780321|r 75 AKDYQLNLIDTPGH 88 (606)
Q Consensus 75 ~~~y~iNlIDTPGH 88 (606)
|.++.+|-.||-|-
T Consensus 117 ~gp~sFtgeD~~el 130 (531)
T KOG1191 117 LGPQSFTGEDVVEL 130 (531)
T ss_pred CCCCEEEEEEEEEE
T ss_conf 58822343325889
No 293
>KOG0088 consensus
Probab=98.09 E-value=4.7e-06 Score=60.10 Aligned_cols=156 Identities=21% Similarity=0.262 Sum_probs=91.9
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHCCEEEEEEEEEEEECCCCCEEEEEEEECCCCCHHHH
Q ss_conf 99980138987788999999829805444431130586779871950523279999743788438999961787300279
Q gi|254780321|r 14 FSIVAHIDHGKSTLADRFIQHCRGLTEREMSSQVLDNMDIERERGITIKAQTVRLNYTSTDAKDYQLNLIDTPGHVDFTY 93 (606)
Q Consensus 14 ~~IiaHvDhGKTTL~d~lL~~tg~i~~~~~~~~vlD~~~~EreRGITIka~~~~~~~~~~~~~~y~iNlIDTPGH~DF~~ 93 (606)
+.++|..=-|||+|+=|..+ ..+.... +-.++.- ..++.+++ +...-.+||.||.|..-|..
T Consensus 16 ~VLLGEGCVGKtSLVLRy~E--nkFn~kH-----lsTlQAS------F~~kk~n~-----ed~ra~L~IWDTAGQErfHA 77 (218)
T KOG0088 16 IVLLGEGCVGKTSLVLRYVE--NKFNCKH-----LSTLQAS------FQNKKVNV-----EDCRADLHIWDTAGQERFHA 77 (218)
T ss_pred EEEECCCCCCHHHHHHHHHH--HHCCHHH-----HHHHHHH------HHHCCCCC-----CCCEEEEEEEECCCHHHHHC
T ss_conf 99974875560689999987--2323046-----7899988------76330462-----11131143212444576523
Q ss_pred HHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHC--C--CCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999730268999986878865589999999970--9--967998326788753211338887755532232100011
Q gi|254780321|r 94 EVSRSLSACEGSLLVVDATQGVEAQTLANVYQAIDN--N--HEIITVLNKADLPSADPDRVKKQIEETIGISTEDALLVS 169 (606)
Q Consensus 94 EV~r~l~a~dgaiLvVdA~~Gvq~QT~~~~~~A~~~--~--l~~I~viNKiD~~~A~~e~v~~ei~~~~g~~~~~ii~vS 169 (606)
-----.+-.+|||||.|-++----|-+.+|-+-+.. | +.+++|=||||++.-+- -..++-+..-.-....-+..|
T Consensus 78 LGPIYYRgSnGalLVyDITDrdSFqKVKnWV~Elr~mlGnei~l~IVGNKiDLEeeR~-Vt~qeAe~YAesvGA~y~eTS 156 (218)
T KOG0088 78 LGPIYYRGSNGALLVYDITDRDSFQKVKNWVLELRTMLGNEIELLIVGNKIDLEEERQ-VTRQEAEAYAESVGALYMETS 156 (218)
T ss_pred CCCEEEECCCCEEEEEECCCHHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCHHHHHH-HHHHHHHHHHHHHCHHHEECC
T ss_conf 5753770799628998644468899999999999987188359999537446788642-029889999986333431111
Q ss_pred HHCCCCCCHHHHHHHHHHH
Q ss_conf 1002232006787763210
Q gi|254780321|r 170 AKTGEGIPLLLERIVQQLP 188 (606)
Q Consensus 170 AktG~GV~~LLd~Iv~~iP 188 (606)
||.+.||.+|++.+...+-
T Consensus 157 Ak~N~Gi~elFe~Lt~~Mi 175 (218)
T KOG0088 157 AKDNVGISELFESLTAKMI 175 (218)
T ss_pred CCCCCCHHHHHHHHHHHHH
T ss_conf 1024379999999999999
No 294
>KOG0394 consensus
Probab=98.08 E-value=7.2e-05 Score=52.15 Aligned_cols=161 Identities=18% Similarity=0.234 Sum_probs=97.8
Q ss_pred CEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHCCEEEEEEEEEEEECCCCCEEEEEEEECCCCCH
Q ss_conf 31799980138987788999999829805444431130586779871950523279999743788438999961787300
Q gi|254780321|r 11 IRNFSIVAHIDHGKSTLADRFIQHCRGLTEREMSSQVLDNMDIERERGITIKAQTVRLNYTSTDAKDYQLNLIDTPGHVD 90 (606)
Q Consensus 11 IRN~~IiaHvDhGKTTL~d~lL~~tg~i~~~~~~~~vlD~~~~EreRGITIka~~~~~~~~~~~~~~y~iNlIDTPGH~D 90 (606)
+--+.|.|..++|||+|.-++... -+ .+.-.-||-+--.+=.+. .+.+-+.+-+.||-|..-
T Consensus 9 lLKViiLGDsGVGKtSLmn~yv~~--kF---------------~~qykaTIgadFltKev~-Vd~~~vtlQiWDTAGQER 70 (210)
T KOG0394 9 LLKVIILGDSGVGKTSLMNQYVNK--KF---------------SQQYKATIGADFLTKEVQ-VDDRSVTLQIWDTAGQER 70 (210)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHH--HH---------------HHHHCCCCCCEEEEEEEE-ECCEEEEEEEEECCCHHH
T ss_conf 359999379984478999999888--88---------------887432000110322799-867699999873311777
Q ss_pred HHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHH-----HCC---CCEEEEECCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 2799999997302689999868788655899999999-----709---96799832678875321133888775553223
Q gi|254780321|r 91 FTYEVSRSLSACEGSLLVVDATQGVEAQTLANVYQAI-----DNN---HEIITVLNKADLPSADPDRVKKQIEETIGIST 162 (606)
Q Consensus 91 F~~EV~r~l~a~dgaiLvVdA~~Gvq~QT~~~~~~A~-----~~~---l~~I~viNKiD~~~A~~e~v~~ei~~~~g~~~ 162 (606)
|..=-....|-+|.++||-|-..-=.-+++.+|+.-+ .+. -|.|+.=||+|+++...-.|...-....--+.
T Consensus 71 FqsLg~aFYRgaDcCvlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~r~VS~~~Aq~WC~s~ 150 (210)
T KOG0394 71 FQSLGVAFYRGADCCVLVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDGGKSRQVSEKKAQTWCKSK 150 (210)
T ss_pred HHHCCCCEECCCCEEEEEECCCCHHHHCCHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCCCCCCEEEHHHHHHHHHHC
T ss_conf 63146411247754789832686466511878999998746879977566799755114777750120188999999865
Q ss_pred HHHH--HHHHHCCCCCCHHHHHHHHHHHC
Q ss_conf 2100--01110022320067877632100
Q gi|254780321|r 163 EDAL--LVSAKTGEGIPLLLERIVQQLPS 189 (606)
Q Consensus 163 ~~ii--~vSAktG~GV~~LLd~Iv~~iP~ 189 (606)
.++. .+|||.+.||+..++.|....-.
T Consensus 151 gnipyfEtSAK~~~NV~~AFe~ia~~aL~ 179 (210)
T KOG0394 151 GNIPYFETSAKEATNVDEAFEEIARRALA 179 (210)
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHH
T ss_conf 99506871024344689999999999986
No 295
>pfam04670 Gtr1_RagA Gtr1/RagA G protein conserved region. GTR1 was first identified in S. cerevisiae as a suppressor of a mutation in RCC1. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1. Included in this family is the human Rag C, a novel protein that has been shown to interact with RagA/B.
Probab=98.07 E-value=0.00015 Score=50.07 Aligned_cols=115 Identities=23% Similarity=0.334 Sum_probs=70.1
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHCCEEEEEEEEEEEECCCCCEEEEEEEECCCCCHHHH
Q ss_conf 99980138987788999999829805444431130586779871950523279999743788438999961787300279
Q gi|254780321|r 14 FSIVAHIDHGKSTLADRFIQHCRGLTEREMSSQVLDNMDIERERGITIKAQTVRLNYTSTDAKDYQLNLIDTPGHVDFTY 93 (606)
Q Consensus 14 ~~IiaHvDhGKTTL~d~lL~~tg~i~~~~~~~~vlD~~~~EreRGITIka~~~~~~~~~~~~~~y~iNlIDTPGH~DF~~ 93 (606)
+-+.|--.+|||+.-.-+. .+.... |++-+ |-|++-.-..+.+. ....+|+.|+||+.+|..
T Consensus 2 iLLMG~~~sGKTSi~~vIF--~~~~p~--------dT~~L----~~T~~ve~~~v~~~----~~l~l~iwD~pGq~~f~e 63 (230)
T pfam04670 2 VLLMGLRGSGKSSMRSIIF--SNYSPR--------DTLRL----GATIDVEQSHVRFL----GNLTLNLWDCPGQDDFME 63 (230)
T ss_pred EEEECCCCCCHHHHHHHHH--CCCCHH--------HHCCC----CCCCCEEEEEEECC----CCCEEEEEECCCCHHHHH
T ss_conf 7875689998777699986--799821--------41202----57777677877416----873689997698353544
Q ss_pred -----HHHHHHHHCCEEEEEEECCCCCCHHHHHHHH----HHHHC--CCCEEEEECCCCCCCCC
Q ss_conf -----9999997302689999868788655899999----99970--99679983267887532
Q gi|254780321|r 94 -----EVSRSLSACEGSLLVVDATQGVEAQTLANVY----QAIDN--NHEIITVLNKADLPSAD 146 (606)
Q Consensus 94 -----EV~r~l~a~dgaiLvVdA~~Gvq~QT~~~~~----~A~~~--~l~~I~viNKiD~~~A~ 146 (606)
+.+..++-|+.-|.|+|+...--..-...+. .|.+. ++++-++|.|||.-..|
T Consensus 64 ~~~~~~~e~if~~v~~lIyV~D~q~~~~~~~l~~~~~~l~~~~~~sp~~~v~vfiHK~D~l~~d 127 (230)
T pfam04670 64 NYLTRQKEHIFSNVGVLIYVFDVESREYEEDLATLVKIIEALYQYSPNAKVFVLIHKMDLLSED 127 (230)
T ss_pred HHCCCCHHHHHHCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCHH
T ss_conf 1200223547644788999996888609999999999999999839998899999603588866
No 296
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=98.05 E-value=0.0001 Score=51.14 Aligned_cols=161 Identities=19% Similarity=0.246 Sum_probs=93.1
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHCCEEEEEEEEEEEECCCCCEEEEEEEECCCCC--H
Q ss_conf 79998013898778899999982980544443113058677987195052327999974378843899996178730--0
Q gi|254780321|r 13 NFSIVAHIDHGKSTLADRFIQHCRGLTEREMSSQVLDNMDIERERGITIKAQTVRLNYTSTDAKDYQLNLIDTPGHV--D 90 (606)
Q Consensus 13 N~~IiaHvDhGKTTL~d~lL~~tg~i~~~~~~~~vlD~~~~EreRGITIka~~~~~~~~~~~~~~y~iNlIDTPGH~--D 90 (606)
||+|.|-.++||||+.-+|. |.-.+.+....+ |.+=.. .....|.+.+..+ +.|.|.||-- .
T Consensus 3 ~iaVtGesGaGKSSfINAlR---Gl~~~d~~aA~t----------Gv~eTT-~~~~~Y~~p~~pn--v~lwDlPG~Gt~~ 66 (197)
T cd04104 3 NIAVTGESGAGKSSFINALR---GVGHEEEGAAPT----------GVVETT-MKRTPYPHPKFPN--VTLWDLPGIGSTA 66 (197)
T ss_pred EEEEECCCCCCHHHHHHHHH---CCCCCCCCCCCC----------CCCCCC-CCCEECCCCCCCC--CEEECCCCCCCCC
T ss_conf 79995589986899999986---889887775888----------887467-7862047999998--7697289999876
Q ss_pred HHHHHH---HHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCC----------CCCCHHHHHHHH
Q ss_conf 279999---9997302689999868788655899999999709967998326788753----------211338887755
Q gi|254780321|r 91 FTYEVS---RSLSACEGSLLVVDATQGVEAQTLANVYQAIDNNHEIITVLNKADLPSA----------DPDRVKKQIEET 157 (606)
Q Consensus 91 F~~EV~---r~l~a~dgaiLvVdA~~Gvq~QT~~~~~~A~~~~l~~I~viNKiD~~~A----------~~e~v~~ei~~~ 157 (606)
|.-+-. --+..+|--| +|.+ .-...--+.-+..+..+|.+...|.||+|..-. +.|++.++|.+-
T Consensus 67 f~~~~Yl~~~~~~~yD~fi-iiss-~rf~~nd~~la~~i~~~gK~fyfVRsK~D~dl~n~~~~~p~~f~~e~~L~~IR~~ 144 (197)
T cd04104 67 FPPDDYLEEMKFSEYDFFI-IISS-TRFSSNDVKLAKAIQCMGKKFYFVRTKVDRDLSNEQRSKPRSFNREQVLQEIRDN 144 (197)
T ss_pred CCHHHHHHHCCCCCCCEEE-EEEC-CCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHCCCCCCCHHHHHHHHHHH
T ss_conf 5989999865855457899-9838-8641426999999998099289998612140005663787665999999999999
Q ss_pred H-------HHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHCCC
Q ss_conf 5-------322321000111002--232006787763210001
Q gi|254780321|r 158 I-------GISTEDALLVSAKTG--EGIPLLLERIVQQLPSPT 191 (606)
Q Consensus 158 ~-------g~~~~~ii~vSAktG--~GV~~LLd~Iv~~iP~P~ 191 (606)
. |+..-.++.+|...- ..-..|.+++...+|.-+
T Consensus 145 c~~~L~~~gv~~p~VFLvS~~~~~~yDFp~L~~tl~~~Lp~~k 187 (197)
T cd04104 145 CLENLQEAGVSEPPVFLVSNFDPSDYDFPKLRETLLKDLPAHK 187 (197)
T ss_pred HHHHHHHCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 9999998699999989993798220776899999999808988
No 297
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=98.04 E-value=0.00011 Score=50.86 Aligned_cols=156 Identities=24% Similarity=0.326 Sum_probs=88.1
Q ss_pred HHHCEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHCCEE--EEEEEEEEEECCCCCEEEEEEEEC
Q ss_conf 525317999801389877889999998298054444311305867798719505--232799997437884389999617
Q gi|254780321|r 8 LSRIRNFSIVAHIDHGKSTLADRFIQHCRGLTEREMSSQVLDNMDIERERGITI--KAQTVRLNYTSTDAKDYQLNLIDT 85 (606)
Q Consensus 8 ~~~IRN~~IiaHvDhGKTTL~d~lL~~tg~i~~~~~~~~vlD~~~~EreRGITI--ka~~~~~~~~~~~~~~y~iNlIDT 85 (606)
.+-|-.++++|--.+|||||.-++ |.+-.+ +-||.= -|+ ..-.+++ .+.+ .+-+-|-
T Consensus 156 LKllADVGLVG~PNaGKSTlls~v---S~AkPK------IadYpF------TTL~PnLGvV~~----~~~~--sfv~ADI 214 (369)
T COG0536 156 LKLLADVGLVGLPNAGKSTLLSAV---SAAKPK------IADYPF------TTLVPNLGVVRV----DGGE--SFVVADI 214 (369)
T ss_pred EEEECCCCCCCCCCCCHHHHHHHH---HHCCCC------CCCCCC------CCCCCCCCEEEE----CCCC--EEEEECC
T ss_conf 700001141258988579899888---606885------448865------302475307996----4886--0799347
Q ss_pred CCCC-----------HHHHHHHHHHHHCCEEEEEEECCCCC--C----HHHHHHHHHHHHC---CCCEEEEECCCCCCCC
Q ss_conf 8730-----------02799999997302689999868788--6----5589999999970---9967998326788753
Q gi|254780321|r 86 PGHV-----------DFTYEVSRSLSACEGSLLVVDATQGV--E----AQTLANVYQAIDN---NHEIITVLNKADLPSA 145 (606)
Q Consensus 86 PGH~-----------DF~~EV~r~l~a~dgaiLvVdA~~Gv--q----~QT~~~~~~A~~~---~l~~I~viNKiD~~~A 145 (606)
||-. +|---++| |-.-+.|||.+.-= - .||+.+-..+... +-+.++|.||||.+.+
T Consensus 215 PGLIEGAs~G~GLG~~FLrHIER----t~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~ 290 (369)
T COG0536 215 PGLIEGASEGVGLGLRFLRHIER----TRVLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLPLD 290 (369)
T ss_pred CCCCCCCCCCCCCCHHHHHHHHH----HHEEEEEEECCCCCCCCHHHHHHHHHHHHHHHCHHHCCCCEEEEEECCCCCCC
T ss_conf 53235644688763888878886----51547998567656779899999999999985777535856999855577667
Q ss_pred CCCCHHHHHHHHHH-HHHHHHHH-HHHHCCCCCCHHHHHHHHHHHCC
Q ss_conf 21133888775553-22321000-11100223200678776321000
Q gi|254780321|r 146 DPDRVKKQIEETIG-ISTEDALL-VSAKTGEGIPLLLERIVQQLPSP 190 (606)
Q Consensus 146 ~~e~v~~ei~~~~g-~~~~~ii~-vSAktG~GV~~LLd~Iv~~iP~P 190 (606)
+ +-.++....+. .......+ +||.++.|+++|+..+.+.+..-
T Consensus 291 ~--e~~~~~~~~l~~~~~~~~~~~ISa~t~~g~~~L~~~~~~~l~~~ 335 (369)
T COG0536 291 E--EELEELKKALAEALGWEVFYLISALTREGLDELLRALAELLEET 335 (369)
T ss_pred H--HHHHHHHHHHHHHCCCCCCEEEEHHCCCCHHHHHHHHHHHHHHH
T ss_conf 8--99999999998740887631554310248799999999999975
No 298
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=98.02 E-value=2.5e-05 Score=55.22 Aligned_cols=154 Identities=21% Similarity=0.265 Sum_probs=83.6
Q ss_pred HHCEEEEEECCCCCCHHHHHHHHHHHCCC-CCCC-CCCCEEECCCHHHH--HHCCEEEEEEEEEEE--------------
Q ss_conf 25317999801389877889999998298-0544-44311305867798--719505232799997--------------
Q gi|254780321|r 9 SRIRNFSIVAHIDHGKSTLADRFIQHCRG-LTER-EMSSQVLDNMDIER--ERGITIKAQTVRLNY-------------- 70 (606)
Q Consensus 9 ~~IRN~~IiaHvDhGKTTL~d~lL~~tg~-i~~~-~~~~~vlD~~~~Er--eRGITIka~~~~~~~-------------- 70 (606)
.+|.-+-+++-.++|||||.++.|...+. +.-. -.+++- -++|.|| +.|+.. +++.-
T Consensus 102 ~gv~~lNl~sSPGSGKTtLLe~ti~~L~~~~~~aVIeGD~~-T~~DA~RI~~~Gv~a----vQInTG~~CHLDA~MV~~a 176 (290)
T PRK10463 102 RKQLVLNLVSSPGSGKTTLLTETLMRLKDSVPCAVIEGDQQ-TVNDAARIRATGTPA----IQVNTGKGCHLDAQMIADA 176 (290)
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCC-CHHHHHHHHHCCCCE----EEECCCCCCCCCHHHHHHH
T ss_conf 79189993069987889999999998733675799960423-566799999769958----9954799767599999999
Q ss_pred -ECCCCCEEEEEEEE------CCCCCHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHH--HHHHHHHCCCCEEEEECCCC
Q ss_conf -43788438999961------7873002799999997302689999868788655899--99999970996799832678
Q gi|254780321|r 71 -TSTDAKDYQLNLID------TPGHVDFTYEVSRSLSACEGSLLVVDATQGVEAQTLA--NVYQAIDNNHEIITVLNKAD 141 (606)
Q Consensus 71 -~~~~~~~y~iNlID------TPGH~DF~~EV~r~l~a~dgaiLvVdA~~Gvq~QT~~--~~~~A~~~~l~~I~viNKiD 141 (606)
...+..+.-+=||. ||--.|.+. +.-++|++.++|-----+. -|..| -+++|||||
T Consensus 177 l~~l~l~~~dllfIENVGNLVCPA~FDLGE---------~~kVvvlSVtEGeDKPlKYP~mF~~a------d~vlinKiD 241 (290)
T PRK10463 177 APRLPLDDNGILFIENVGNLVCPASFDLGE---------KHKVAVLSVTEGEDKPLKYPHMFAAA------SLMLLNKVD 241 (290)
T ss_pred HHHCCCCCCCEEEEECCCCCCCCCCCCCCC---------CEEEEEEEECCCCCCCCCCHHHHHHC------CEEEEEHHH
T ss_conf 984898779899981278843551203677---------61799997068888644476676425------789986565
Q ss_pred CC---CCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHH
Q ss_conf 87---53211338887755532232100011100223200678776
Q gi|254780321|r 142 LP---SADPDRVKKQIEETIGISTEDALLVSAKTGEGIPLLLERIV 184 (606)
Q Consensus 142 ~~---~A~~e~v~~ei~~~~g~~~~~ii~vSAktG~GV~~LLd~Iv 184 (606)
+- +.|.+++.+.+..+- ..-+++++||+||.|+++.++-+-
T Consensus 242 Llp~~dFD~~~~~~~~~~vN--p~~~v~~vSa~tGeGld~W~~WL~ 285 (290)
T PRK10463 242 LLPYLNFDVEKCIACAREVN--PEIEIILISATSGEGMDQWLNWLE 285 (290)
T ss_pred HHHHCCCCHHHHHHHHHHHC--CCCCEEEEECCCCCCHHHHHHHHH
T ss_conf 12202889999999999869--898589975688878999999999
No 299
>KOG0076 consensus
Probab=97.99 E-value=3.4e-05 Score=54.31 Aligned_cols=154 Identities=22% Similarity=0.258 Sum_probs=91.2
Q ss_pred EEEEECCCCCCHHHHHHHHHH-HCCCCCCCCCCCEEECCCHHHHHHCCEEEEEEEEEEEECCCCCEEEEEEEECCCCCHH
Q ss_conf 799980138987788999999-8298054444311305867798719505232799997437884389999617873002
Q gi|254780321|r 13 NFSIVAHIDHGKSTLADRFIQ-HCRGLTEREMSSQVLDNMDIERERGITIKAQTVRLNYTSTDAKDYQLNLIDTPGHVDF 91 (606)
Q Consensus 13 N~~IiaHvDhGKTTL~d~lL~-~tg~i~~~~~~~~vlD~~~~EreRGITIka~~~~~~~~~~~~~~y~iNlIDTPGH~DF 91 (606)
++-|.|--.+||||+.+++=. +++.... ++.++ =--|++...-++.. .+-.++++|--|..-
T Consensus 19 ~vlIlgldnAGKttfLe~~Kt~~~~~~~~----------l~~~k-i~~tvgLnig~i~v-----~~~~l~fwdlgGQe~- 81 (197)
T KOG0076 19 SVLILGLDNAGKTTFLEALKTDFSKAYGG----------LNPSK-ITPTVGLNIGTIEV-----CNAPLSFWDLGGQES- 81 (197)
T ss_pred HHEEECCCCCCCHHHHHHHHHHHHHHHCC----------CCHHH-EECCCCEEECCEEE-----CCCEEEEEECCCHHH-
T ss_conf 10024244578520898877788765168----------88888-10122403131641-----254167788678087-
Q ss_pred HHHHHHHH-----HHCCEEEEEEECCCC--CC---HHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHH-
Q ss_conf 79999999-----730268999986878--86---55899999999709967998326788753211338887755532-
Q gi|254780321|r 92 TYEVSRSL-----SACEGSLLVVDATQG--VE---AQTLANVYQAIDNNHEIITVLNKADLPSADPDRVKKQIEETIGI- 160 (606)
Q Consensus 92 ~~EV~r~l-----~a~dgaiLvVdA~~G--vq---~QT~~~~~~A~~~~l~~I~viNKiD~~~A~~e~v~~ei~~~~g~- 160 (606)
-||| .-|-|.+.||||+.- .+ .+-+++...-...|.|+++..||-|++++- -.+||...++.
T Consensus 82 ----lrSlw~~yY~~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lankqd~q~~~---~~~El~~~~~~~ 154 (197)
T KOG0076 82 ----LRSLWKKYYWLAHGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLANKQDLQNAM---EAAELDGVFGLA 154 (197)
T ss_pred ----HHHHHHHHHHHHCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCHHHHHHHH---HHHHHHHHHHHH
T ss_conf ----8999999999726347764177778888879999999987876287154340043303056---689898774266
Q ss_pred -----HHHHHHHHHHHCCCCCCHHHHHHHHHHHCC
Q ss_conf -----232100011100223200678776321000
Q gi|254780321|r 161 -----STEDALLVSAKTGEGIPLLLERIVQQLPSP 190 (606)
Q Consensus 161 -----~~~~ii~vSAktG~GV~~LLd~Iv~~iP~P 190 (606)
...-..|+||.+|.||.+=.+-++..+|.-
T Consensus 155 e~~~~rd~~~~pvSal~gegv~egi~w~v~~~~kn 189 (197)
T KOG0076 155 ELIPRRDNPFQPVSALTGEGVKEGIEWLVKKLEKN 189 (197)
T ss_pred HHCCCCCCCCCCCHHHHCCCHHHHHHHHHHHHHHC
T ss_conf 53688657644214540556778899999998623
No 300
>KOG0071 consensus
Probab=97.96 E-value=0.00019 Score=49.33 Aligned_cols=148 Identities=19% Similarity=0.287 Sum_probs=91.0
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHCCEEEEEEEEEEEECCCCCEEEEEEEECCCCCHHHH
Q ss_conf 99980138987788999999829805444431130586779871950523279999743788438999961787300279
Q gi|254780321|r 14 FSIVAHIDHGKSTLADRFIQHCRGLTEREMSSQVLDNMDIERERGITIKAQTVRLNYTSTDAKDYQLNLIDTPGHVDFTY 93 (606)
Q Consensus 14 ~~IiaHvDhGKTTL~d~lL~~tg~i~~~~~~~~vlD~~~~EreRGITIka~~~~~~~~~~~~~~y~iNlIDTPGH~DF~~ 93 (606)
+-.+|--.+||||+.-.|- .+.... ...++ |..|+ ++.| ++-++|.-|.-|.-...-
T Consensus 20 ilmlGLd~aGKTtiLyKLk--l~~~~~--~ipTv----------GFnve----tVty-----kN~kfNvwdvGGqd~iRp 76 (180)
T KOG0071 20 ILMLGLDAAGKTTILYKLK--LGQSVT--TIPTV----------GFNVE----TVTY-----KNVKFNVWDVGGQDKIRP 76 (180)
T ss_pred EEEEECCCCCCEEHHHHHH--CCCCCC--CCCCC----------CEEEE----EEEE-----EEEEEEEEECCCCHHHHH
T ss_conf 7888126688400346876--289764--03554----------20477----7773-----006885212267122048
Q ss_pred HHHHHHHHCCEEEEEEECCCCCC-HHHHHHHHHHHH----CCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHH-----
Q ss_conf 99999973026899998687886-558999999997----09967998326788753211338887755532232-----
Q gi|254780321|r 94 EVSRSLSACEGSLLVVDATQGVE-AQTLANVYQAID----NNHEIITVLNKADLPSADPDRVKKQIEETIGISTE----- 163 (606)
Q Consensus 94 EV~r~l~a~dgaiLvVdA~~Gvq-~QT~~~~~~A~~----~~l~~I~viNKiD~~~A~~e~v~~ei~~~~g~~~~----- 163 (606)
==++-.....|.|+|+|+.+-=. ...+.-++.++. ..+++++.-||-|+|+|. -.+||.+.+++++-
T Consensus 77 lWrhYy~gtqglIFV~Dsa~~dr~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp~A~---~pqei~d~leLe~~r~~~W 153 (180)
T KOG0071 77 LWRHYYTGTQGLIFVVDSADRDRIEEARNELHRIINDREMRDAIILILANKQDLPDAM---KPQEIQDKLELERIRDRNW 153 (180)
T ss_pred HHHHHCCCCCEEEEEEECCCCCHHHHHHHHHHHHHCCHHHHCCEEEEEECCCCCCCCC---CHHHHHHHHCCCCCCCCCC
T ss_conf 8986356772599998243210499999999998578766120589885466552216---9899888754231269960
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHH
Q ss_conf 100011100223200678776321
Q gi|254780321|r 164 DALLVSAKTGEGIPLLLERIVQQL 187 (606)
Q Consensus 164 ~ii~vSAktG~GV~~LLd~Iv~~i 187 (606)
-+.|+||.+|.|..+=|--+.+..
T Consensus 154 ~vqp~~a~~gdgL~eglswlsnn~ 177 (180)
T KOG0071 154 YVQPSCALSGDGLKEGLSWLSNNL 177 (180)
T ss_pred EEECCCCCCHHHHHHHHHHHHHHC
T ss_conf 660353444027888999998552
No 301
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=97.95 E-value=2.5e-05 Score=55.30 Aligned_cols=96 Identities=26% Similarity=0.321 Sum_probs=61.6
Q ss_pred CHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCC--CCCCCHHHHHHHH---HHHHHH
Q ss_conf 00279999999730268999986878865589999999970996799832678875--3211338887755---532232
Q gi|254780321|r 89 VDFTYEVSRSLSACEGSLLVVDATQGVEAQTLANVYQAIDNNHEIITVLNKADLPS--ADPDRVKKQIEET---IGISTE 163 (606)
Q Consensus 89 ~DF~~EV~r~l~a~dgaiLvVdA~~Gvq~QT~~~~~~A~~~~l~~I~viNKiD~~~--A~~e~v~~ei~~~---~g~~~~ 163 (606)
.||...++....--.-++.|||+.+=.. +...--...-.+-++++|+||+|+-. .+.+++.+-+.+. .|+...
T Consensus 51 ~d~~~~l~~i~~~~~lVv~VvDi~Df~g--S~~~~l~~~~~~~~v~lV~NK~DLLP~~~~~~~i~~wv~~~~~~~gl~~~ 128 (360)
T TIGR03597 51 DDFLNLLNSLGDSNALIVYVVDIFDFEG--SLIPELKRFVGGNPVLLVGNKIDLLPKSVNLSKIKEWMKKRAKELGLKPV 128 (360)
T ss_pred HHHHHHHHHHCCCCCEEEEEEECCCCCC--CHHHHHHHHHCCCCEEEEEEHHHCCCCCCCHHHHHHHHHHHHHHCCCCCC
T ss_conf 9999999874236837999986414776--53464999838985899998054288767879999999999998599836
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHH
Q ss_conf 10001110022320067877632
Q gi|254780321|r 164 DALLVSAKTGEGIPLLLERIVQQ 186 (606)
Q Consensus 164 ~ii~vSAktG~GV~~LLd~Iv~~ 186 (606)
++..+||++|.|+++|++.|-++
T Consensus 129 ~V~lvSa~~g~gi~~l~~~i~~~ 151 (360)
T TIGR03597 129 DIILVSAKKGNGIDELLDKIKKA 151 (360)
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
T ss_conf 68999688898999999999987
No 302
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=97.92 E-value=0.00038 Score=47.35 Aligned_cols=136 Identities=23% Similarity=0.351 Sum_probs=76.1
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHCCEEEEEEEEEEEECCCCCEEEEEEEECCCCCHHH
Q ss_conf 79998013898778899999982980544443113058677987195052327999974378843899996178730027
Q gi|254780321|r 13 NFSIVAHIDHGKSTLADRFIQHCRGLTEREMSSQVLDNMDIERERGITIKAQTVRLNYTSTDAKDYQLNLIDTPGHVDFT 92 (606)
Q Consensus 13 N~~IiaHvDhGKTTL~d~lL~~tg~i~~~~~~~~vlD~~~~EreRGITIka~~~~~~~~~~~~~~y~iNlIDTPGH~DF~ 92 (606)
|+-++|-.+.||||+...|+. +-.+..+... +......++...|.+..+.+. .++-...+|+|||||.-|+.
T Consensus 6 nimVvG~sGlGKsTfiNtLf~-~~~~~~~~~~----~~~~~~~~~t~~i~~~~~~i~---e~g~~l~LtviDTpGfGd~i 77 (276)
T cd01850 6 NIMVVGESGLGKSTFINTLFN-TKLIPSDYPP----DPAEEHIDKTVEIKSSKAEIE---ENGVKLKLTVIDTPGFGDNI 77 (276)
T ss_pred EEEEECCCCCCHHHHHHHHHC-CCCCCCCCCC----CCHHHCCCCCCEEEEEEEEEE---ECCEEEEEEEEECCCCCCCC
T ss_conf 999976899988999999747-8577877778----813205688825899999996---39989999999768841223
Q ss_pred H---------------------HHHHHHH---H----CCEEEEEEECC-CCCCHHHHHHHHHHHHCCCCEEEEECCCCCC
Q ss_conf 9---------------------9999997---3----02689999868-7886558999999997099679983267887
Q gi|254780321|r 93 Y---------------------EVSRSLS---A----CEGSLLVVDAT-QGVEAQTLANVYQAIDNNHEIITVLNKADLP 143 (606)
Q Consensus 93 ~---------------------EV~r~l~---a----~dgaiLvVdA~-~Gvq~QT~~~~~~A~~~~l~~I~viNKiD~~ 143 (606)
. |=++.-| . +..+|..++.+ .|..+--+.. .+.+....-+||||-|-|.-
T Consensus 78 ~n~~~~~~I~~yI~~qf~~yl~eE~~i~R~~~~~D~RVH~cLYFI~Ptgh~L~~lDi~~-mk~Ls~~vNvIPVIaKADtl 156 (276)
T cd01850 78 NNSDCWKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGHGLKPLDIEF-MKRLSKRVNIIPVIAKADTL 156 (276)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEEECCCCCCCCHHHHHH-HHHHCCCCCEEEEEECCCCC
T ss_conf 60340999999999999999999853145788877744899999678888887999999-99962756456678516669
Q ss_pred CC-CCCCHHHHHHHH
Q ss_conf 53-211338887755
Q gi|254780321|r 144 SA-DPDRVKKQIEET 157 (606)
Q Consensus 144 ~A-~~e~v~~ei~~~ 157 (606)
.. +....+..|.+.
T Consensus 157 T~~El~~~K~~I~~~ 171 (276)
T cd01850 157 TPEELKEFKQRIMED 171 (276)
T ss_pred CHHHHHHHHHHHHHH
T ss_conf 999999999999999
No 303
>KOG0079 consensus
Probab=97.86 E-value=0.00073 Score=45.43 Aligned_cols=163 Identities=21% Similarity=0.254 Sum_probs=103.1
Q ss_pred HHHCEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHCCEEEEEEEEEEEECCCCCEEEEEEEECCC
Q ss_conf 52531799980138987788999999829805444431130586779871950523279999743788438999961787
Q gi|254780321|r 8 LSRIRNFSIVAHIDHGKSTLADRFIQHCRGLTEREMSSQVLDNMDIERERGITIKAQTVRLNYTSTDAKDYQLNLIDTPG 87 (606)
Q Consensus 8 ~~~IRN~~IiaHvDhGKTTL~d~lL~~tg~i~~~~~~~~vlD~~~~EreRGITIka~~~~~~~~~~~~~~y~iNlIDTPG 87 (606)
+.+.--.+|||..+-|||+|+-|+ ...+++..-.... |+-.+-.++. .+|...++-|.||-|
T Consensus 5 ~dhLfkllIigDsgVGKssLl~rF--~ddtFs~sYitTi-----------GvDfkirTv~-----i~G~~VkLqIwDtAG 66 (198)
T KOG0079 5 YDHLFKLLIIGDSGVGKSSLLLRF--ADDTFSGSYITTI-----------GVDFKIRTVD-----INGDRVKLQIWDTAG 66 (198)
T ss_pred HHHHHHHHEECCCCCCHHHHHHHH--HHCCCCCCEEEEE-----------EEEEEEEEEE-----CCCCEEEEEEEECCC
T ss_conf 888988883268764578999998--5255565148875-----------3357999860-----488689999861405
Q ss_pred CCHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHC---CCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 300279999999730268999986878865589999999970---99679983267887532113388877555322321
Q gi|254780321|r 88 HVDFTYEVSRSLSACEGSLLVVDATQGVEAQTLANVYQAIDN---NHEIITVLNKADLPSADPDRVKKQIEETIGISTED 164 (606)
Q Consensus 88 H~DF~~EV~r~l~a~dgaiLvVdA~~Gvq~QT~~~~~~A~~~---~l~~I~viNKiD~~~A~~e~v~~ei~~~~g~~~~~ 164 (606)
..-|..-.+.-.+...|.++|-|-+.|---.-..-|..-.+. .++-+.|=||-|.|..+.-.. ++-...-.--.-+
T Consensus 67 qErFrtitstyyrgthgv~vVYDVTn~ESF~Nv~rWLeei~~ncdsv~~vLVGNK~d~~~RrvV~t-~dAr~~A~~mgie 145 (198)
T KOG0079 67 QERFRTITSTYYRGTHGVIVVYDVTNGESFNNVKRWLEEIRNNCDSVPKVLVGNKNDDPERRVVDT-EDARAFALQMGIE 145 (198)
T ss_pred HHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCEECCCCCCCCCCEEEEH-HHHHHHHHHCCCH
T ss_conf 799999988770388669999977663656759999999985496435221046788754334303-8899999866920
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHC
Q ss_conf 0001110022320067877632100
Q gi|254780321|r 165 ALLVSAKTGEGIPLLLERIVQQLPS 189 (606)
Q Consensus 165 ii~vSAktG~GV~~LLd~Iv~~iP~ 189 (606)
.+..|||..+++++.+..|...+--
T Consensus 146 ~FETSaKe~~NvE~mF~cit~qvl~ 170 (198)
T KOG0079 146 LFETSAKENENVEAMFHCITKQVLQ 170 (198)
T ss_pred HEEHHHHHCCCCHHHHHHHHHHHHH
T ss_conf 1000023302416789999999999
No 304
>KOG0097 consensus
Probab=97.84 E-value=0.00063 Score=45.85 Aligned_cols=158 Identities=30% Similarity=0.366 Sum_probs=94.2
Q ss_pred CCCCCCCHHHCEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCC-HHHHHHCCEEEEEEEEEEEECCCCCEEE
Q ss_conf 988899852531799980138987788999999829805444431130586-7798719505232799997437884389
Q gi|254780321|r 1 MQKKPTPLSRIRNFSIVAHIDHGKSTLADRFIQHCRGLTEREMSSQVLDNM-DIERERGITIKAQTVRLNYTSTDAKDYQ 79 (606)
Q Consensus 1 ~~~~~~p~~~IRN~~IiaHvDhGKTTL~d~lL~~tg~i~~~~~~~~vlD~~-~~EreRGITIka~~~~~~~~~~~~~~y~ 79 (606)
|.-.|+--+-|-..-|||..+-|||-|.-++-+.-= |. |.- .+--|-|--| + ...|...+
T Consensus 1 m~~~pynysyifkyiiigdmgvgkscllhqftekkf------ma----dcphtigvefgtri------i---evsgqkik 61 (215)
T KOG0097 1 MTAAPYNYSYIFKYIIIGDMGVGKSCLLHQFTEKKF------MA----DCPHTIGVEFGTRI------I---EVSGQKIK 61 (215)
T ss_pred CCCCCCCHHHEEEEEEECCCCCCHHHHHHHHHHHHH------HH----CCCCCCCEECCEEE------E---EEECCEEE
T ss_conf 977765421247788872465547788888877677------50----59852403123069------9---96074899
Q ss_pred EEEEECCCCCHHHHHHHHH-HHHCCEEEEEEECCCCCCHHHHHHH--HHHHHCCCC-----EEEEECCCCCCCCCCCCHH
Q ss_conf 9996178730027999999-9730268999986878865589999--999970996-----7998326788753211338
Q gi|254780321|r 80 LNLIDTPGHVDFTYEVSRS-LSACEGSLLVVDATQGVEAQTLANV--YQAIDNNHE-----IITVLNKADLPSADPDRVK 151 (606)
Q Consensus 80 iNlIDTPGH~DF~~EV~r~-l~a~dgaiLvVdA~~Gvq~QT~~~~--~~A~~~~l~-----~I~viNKiD~~~A~~e~v~ 151 (606)
+.+.||.|...|.. |.|| .+.+-|||+|-|-+.-- |--|+ |++-..+|. ++..=||-|+++-+ +-..
T Consensus 62 lqiwdtagqerfra-vtrsyyrgaagalmvyditrrs---tynhlsswl~dar~ltnpnt~i~lignkadle~qr-dv~y 136 (215)
T KOG0097 62 LQIWDTAGQERFRA-VTRSYYRGAAGALMVYDITRRS---TYNHLSSWLTDARNLTNPNTVIFLIGNKADLESQR-DVTY 136 (215)
T ss_pred EEEEECCCHHHHHH-HHHHHHCCCCCEEEEEEEHHHH---HHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHC-CCCH
T ss_conf 99731325798999-8898860666506899741133---46668888865341489971899965611144503-7868
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCH-HHHH
Q ss_conf 887755532232100011100223200-6787
Q gi|254780321|r 152 KQIEETIGISTEDALLVSAKTGEGIPL-LLER 182 (606)
Q Consensus 152 ~ei~~~~g~~~~~ii~vSAktG~GV~~-LLd~ 182 (606)
+|-.++-.-..--.+.+|||+|.+|++ .|++
T Consensus 137 eeak~faeengl~fle~saktg~nvedafle~ 168 (215)
T KOG0097 137 EEAKEFAEENGLMFLEASAKTGQNVEDAFLET 168 (215)
T ss_pred HHHHHHHHHCCEEEEEECCCCCCCHHHHHHHH
T ss_conf 99998887559089981232367668999999
No 305
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=97.81 E-value=3e-05 Score=54.70 Aligned_cols=161 Identities=19% Similarity=0.252 Sum_probs=85.2
Q ss_pred CEEEEEECCCCCCHHHHHHHHHHHCCC-CCCCC-CCCEEECCCHHHHH--HCCEEEE---E-EE----EEEEEC----CC
Q ss_conf 317999801389877889999998298-05444-43113058677987--1950523---2-79----999743----78
Q gi|254780321|r 11 IRNFSIVAHIDHGKSTLADRFIQHCRG-LTERE-MSSQVLDNMDIERE--RGITIKA---Q-TV----RLNYTS----TD 74 (606)
Q Consensus 11 IRN~~IiaHvDhGKTTL~d~lL~~tg~-i~~~~-~~~~vlD~~~~Ere--RGITIka---~-~~----~~~~~~----~~ 74 (606)
++-+.+.|-+++|||||.++++..-.. .+-.- .++.+....+.... -|+-|.. . .| +|.... ..
T Consensus 13 ~~~i~v~Gp~GSGKTaLie~~~~~L~~~~~~aVI~~Di~t~~Da~~l~~~~g~~i~~v~TG~~CH~da~m~~~ai~~l~~ 92 (202)
T COG0378 13 MLRIGVGGPPGSGKTALIEKTLRALKDEYKIAVITGDIYTKEDADRLRKLPGEPIIGVETGKGCHLDASMNLEAIEELVL 92 (202)
T ss_pred EEEEEECCCCCCCHHHHHHHHHHHHHHHCCEEEEECEEECHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHHHH
T ss_conf 48999617998678999999999997527768996404006559999737798068740387658867889999999863
Q ss_pred C-CEEEEEEEECCCC--CHHHHHHHHHHHHCC-EEEEEEECCCCCCHHHHHHHHHHHHCCC--CEEEEECCCCCC---CC
Q ss_conf 8-4389999617873--002799999997302-6899998687886558999999997099--679983267887---53
Q gi|254780321|r 75 A-KDYQLNLIDTPGH--VDFTYEVSRSLSACE-GSLLVVDATQGVEAQTLANVYQAIDNNH--EIITVLNKADLP---SA 145 (606)
Q Consensus 75 ~-~~y~iNlIDTPGH--~DF~~EV~r~l~a~d-gaiLvVdA~~Gvq~QT~~~~~~A~~~~l--~~I~viNKiD~~---~A 145 (606)
| .+.-+=||..=|- .-|+++. .| ..+.|+|.++|...--+-. -++ .=++||||.|+. ++
T Consensus 93 ~~~~~Dll~iEs~GNL~~~~sp~L------~d~~~v~VidvteGe~~P~K~g------P~i~~aDllVInK~DLa~~v~~ 160 (202)
T COG0378 93 DFPDLDLLFIESVGNLVCPFSPDL------GDHLRVVVIDVTEGEDIPRKGG------PGIFKADLLVINKTDLAPYVGA 160 (202)
T ss_pred CCCCCCEEEEECCCCEECCCCCCH------HHCEEEEEEECCCCCCCCCCCC------CCEEEEEEEEEEHHHHHHHHCC
T ss_conf 177677899923764324468041------3046999998788888765579------9646741899856773877286
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q ss_conf 2113388877555322321000111002232006787763
Q gi|254780321|r 146 DPDRVKKQIEETIGISTEDALLVSAKTGEGIPLLLERIVQ 185 (606)
Q Consensus 146 ~~e~v~~ei~~~~g~~~~~ii~vSAktG~GV~~LLd~Iv~ 185 (606)
|.+...+.+...= ..-.++++|++||.|++++++.|..
T Consensus 161 dlevm~~da~~~n--p~~~ii~~n~ktg~G~~~~~~~i~~ 198 (202)
T COG0378 161 DLEVMARDAKEVN--PEAPIIFTNLKTGEGLDEWLRFIEP 198 (202)
T ss_pred CHHHHHHHHHHHC--CCCCEEEEECCCCCCHHHHHHHHHH
T ss_conf 6999999999849--9998899847878689999999876
No 306
>pfam00735 Septin Septin. Members of this family include CDC3, CDC10, CDC11 and CDC12/Septin. Members of this family bind GTP. As regards the septins, these are polypeptides of 30-65kDa with three characteristic GTPase motifs (G-1, G-3 and G-4) that are similar to those of the Ras family. The G-4 motif is strictly conserved with a unique septin consensus of AKAD. Most septins are thought to have at least one coiled-coil region, which in some cases is necessary for intermolecular interactions that allow septins to polymerize to form rod-shaped complexes. In turn, these are arranged into tandem arrays to form filaments. They are multifunctional proteins, with roles in cytokinesis, sporulation, germ cell development, exocytosis and apoptosis.
Probab=97.81 E-value=0.00075 Score=45.32 Aligned_cols=122 Identities=25% Similarity=0.349 Sum_probs=72.4
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHCCEEEEEEEEEEEECCCCCEEEEEEEECCCCCHHH
Q ss_conf 79998013898778899999982980544443113058677987195052327999974378843899996178730027
Q gi|254780321|r 13 NFSIVAHIDHGKSTLADRFIQHCRGLTEREMSSQVLDNMDIERERGITIKAQTVRLNYTSTDAKDYQLNLIDTPGHVDFT 92 (606)
Q Consensus 13 N~~IiaHvDhGKTTL~d~lL~~tg~i~~~~~~~~vlD~~~~EreRGITIka~~~~~~~~~~~~~~y~iNlIDTPGH~DF~ 92 (606)
|+-++|--+.|||||...|+. +-.+..+.. +.-.....+...|.+.+..+. .++-...+|+|||||..|..
T Consensus 6 nimvvG~sGlGKTTfiNtL~~-~~~~~~~~~-----~~~~~~~~~t~~i~~~~~~ie---e~g~~l~LtiiDTpGfGd~i 76 (280)
T pfam00735 6 TLMVVGESGLGKTTLINTLFL-TDLYPERGI-----PGPSEKIKKTVEIKATTVEIE---EDGVKLNLTVIDTPGFGDAI 76 (280)
T ss_pred EEEEECCCCCCHHHHHHHHHC-CCCCCCCCC-----CCCCCCCCCCCCEEEEEEEEE---ECCEEEEEEEEECCCCCCCC
T ss_conf 999977999978999999857-857786678-----884335567753488999998---89989999999899842334
Q ss_pred HH---------------------HHHHHH--H----CCEEEEEEECC-CCCCHHHHHHHHHHHHCCCCEEEEECCCCCCC
Q ss_conf 99---------------------999997--3----02689999868-78865589999999970996799832678875
Q gi|254780321|r 93 YE---------------------VSRSLS--A----CEGSLLVVDAT-QGVEAQTLANVYQAIDNNHEIITVLNKADLPS 144 (606)
Q Consensus 93 ~E---------------------V~r~l~--a----~dgaiLvVdA~-~Gvq~QT~~~~~~A~~~~l~~I~viNKiD~~~ 144 (606)
-. -++.-+ . +..+|..++.+ .|..+--+..+ +.+....-+||||-|-|.-.
T Consensus 77 ~n~~~~~~I~~yI~~qf~~yl~eE~~i~R~~~~D~RVH~cLYFI~Ptgh~L~~lDi~~m-k~Ls~~vNvIPVIaKADtLT 155 (280)
T pfam00735 77 DNSNCWKPIVEYIDEQFEQYLRDESRLNRTSIVDNRVHCCLYFISPTGHGLKPLDVEFM-KKLHEKVNIIPVIAKADTLT 155 (280)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEECCCCCCCCHHHHHHH-HHHHCCCCEEEEEECCCCCC
T ss_conf 51666999999999999999998647566777888437999975688888868899999-98714465366662145589
No 307
>cd03695 CysN_NodQ_II CysN_NodQ_II: This subfamily represents the domain II of the large subunit of ATP sulfurylase (ATPS): CysN or the N-terminal portion of NodQ, found mainly in proteobacteria and homologous to the domain II of EF-Tu. Escherichia coli ATPS consists of CysN and a smaller subunit CysD and CysN. ATPS produces adenosine-5'-phosphosulfate (APS) from ATP and sulfate, coupled with GTP hydrolysis. In the subsequent reaction APS is phosphorylated by an APS kinase (CysC), to produce 3'-phosphoadenosine-5'-phosphosulfate (PAPS) for use in amino acid (aa) biosynthesis. The Rhizobiaceae group (alpha-proteobacteria) appears to carry out the same chemistry for the sufation of a nodulation factor. In Rhizobium meliloti, a the hererodimeric complex comprised of NodP and NodQ appears to possess both ATPS and APS kinase activities. The N and C termini of NodQ correspond to CysN and CysC, respectively. Other eubacteria, Archaea, and eukaryotes use a different ATP sulfurylase, which sho
Probab=97.81 E-value=2.6e-05 Score=55.15 Aligned_cols=81 Identities=12% Similarity=0.107 Sum_probs=56.7
Q ss_pred CCCCCCCEEECCCCCEEEEEEECCCCCCCCCEEEEECCCCCCCCCCCCCCCCCEEEEHHCCCCCHHHHHHCCCCCCCCCC
Q ss_conf 33101210114757259999816987355845887335564210122233554124010124712332201100244445
Q gi|254780321|r 200 LKALLIDSWYNSYLGVMVLVRIINGQLTKGQSIRLMGTNAKYQVERIGILTPKMIDIEALYPGEIGVMIASIKEVSHTRV 279 (606)
Q Consensus 200 l~alVfds~~D~~~G~I~~~RV~sG~lk~Gd~I~~~~~g~~~~v~~ig~~~~~~~~v~~l~aGdVG~ii~gik~l~~~~v 279 (606)
|++.|-+..-...-++...|+|.+|+++.||+|.++++|++.+|.+|... ..+++++.+||- +...+++--|+..
T Consensus 1 fr~PVQ~V~r~~~~~R~~~G~v~sG~v~~GD~v~i~Psg~~a~Vk~I~~~---~~~~~~A~aG~~--v~l~L~~eidisR 75 (81)
T cd03695 1 FRFPVQYVIRPNADFRGYAGTIASGSIRVGDEVVVLPSGKTSRVKSIETF---DGELDEAGAGES--VTLTLEDEIDVSR 75 (81)
T ss_pred CCCCEEEEEECCCCCCEEEEEEEECCEECCCEEEECCCCCCEEEEEEEEC---CCCCCEECCCCE--EEEEECCCCCCCC
T ss_conf 93251899826998468999993355838999996899981899899958---998248879982--8999787311579
Q ss_pred CCEECC
Q ss_conf 420004
Q gi|254780321|r 280 GDTITD 285 (606)
Q Consensus 280 GDTl~~ 285 (606)
||.|++
T Consensus 76 Gdvi~s 81 (81)
T cd03695 76 GDVIVA 81 (81)
T ss_pred CCEEEC
T ss_conf 879859
No 308
>PRK13796 GTP-binding protein YqeH; Provisional
Probab=97.81 E-value=5.7e-05 Score=52.86 Aligned_cols=93 Identities=27% Similarity=0.367 Sum_probs=57.8
Q ss_pred CHHHHHHHHHHHHCC-EEEEEEECCCCCCHHHH-HHHHHHHHCCCCEEEEECCCCCCC--CCCCCHHHHHHHH---HHHH
Q ss_conf 002799999997302-68999986878865589-999999970996799832678875--3211338887755---5322
Q gi|254780321|r 89 VDFTYEVSRSLSACE-GSLLVVDATQGVEAQTL-ANVYQAIDNNHEIITVLNKADLPS--ADPDRVKKQIEET---IGIS 161 (606)
Q Consensus 89 ~DF~~EV~r~l~a~d-gaiLvVdA~~Gvq~QT~-~~~~~A~~~~l~~I~viNKiD~~~--A~~e~v~~ei~~~---~g~~ 161 (606)
.||....+ .++--+ -++.|||..+=.. +. ..+... -.+-++++|+||+|+-- .+.+++.+-+.+. .|+.
T Consensus 59 ~d~~~~l~-~i~~~~~lvv~VvDi~Df~g--S~~~~l~~~-ig~~~vilV~NKvDLLP~~~~~~~~~~wv~~~~~~~gl~ 134 (367)
T PRK13796 59 DDFLRLLN-GIGDSDALVVNVVDIFDFNG--SWIPGLHRF-VGNNPVLLVGNKADLLPKSVKKNKVKNWLRQEAKELGLR 134 (367)
T ss_pred HHHHHHHH-HHCCCCCEEEEEEECCCCCC--CHHHHHHHH-HCCCCEEEEEECHHCCCCCCCHHHHHHHHHHHHHHCCCC
T ss_conf 99999998-62536708999997445776--513508987-189848999982333887678789999999999975998
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHH
Q ss_conf 321000111002232006787763
Q gi|254780321|r 162 TEDALLVSAKTGEGIPLLLERIVQ 185 (606)
Q Consensus 162 ~~~ii~vSAktG~GV~~LLd~Iv~ 185 (606)
..++..+||++|.|+++|++.|-+
T Consensus 135 ~~dV~lvSak~g~gv~~L~~~i~~ 158 (367)
T PRK13796 135 PVDVVLISAQKGQGIDELLDAIEK 158 (367)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
T ss_conf 552899946578899999999998
No 309
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=97.80 E-value=0.0001 Score=51.15 Aligned_cols=99 Identities=27% Similarity=0.328 Sum_probs=70.5
Q ss_pred CCCCH-HHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 87300-27999999973026899998687886558999999997099679983267887532113388877555322321
Q gi|254780321|r 86 PGHVD-FTYEVSRSLSACEGSLLVVDATQGVEAQTLANVYQAIDNNHEIITVLNKADLPSADPDRVKKQIEETIGISTED 164 (606)
Q Consensus 86 PGH~D-F~~EV~r~l~a~dgaiLvVdA~~Gvq~QT~~~~~~A~~~~l~~I~viNKiD~~~A~~e~v~~ei~~~~g~~~~~ 164 (606)
|||.- -.-+..+.+..+|-.|-|+||....-.+-..... ...+-|+|+|+||+|+.. .+..++..+.|.-...+
T Consensus 5 PGHm~ka~~~l~~~l~~~DvileV~DAR~Pl~~~n~~l~~--~~~~K~~ilvlNK~DL~~---~~~~~~w~~~~~~~~~~ 79 (276)
T TIGR03596 5 PGHMAKARREIKEKLKLVDVVIEVLDARIPLSSRNPMIDE--IRGNKPRLIVLNKADLAD---PAVTKQWLKYFEQKGIK 79 (276)
T ss_pred HHHHHHHHHHHHHHHHHCCEEEEEEECCCCCCCCCHHHHH--HHCCCCEEEEEECCCCCC---HHHHHHHHHHHHHCCCC
T ss_conf 5889999999999987599999998677887868975999--866996799973434599---99999999999843991
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHC
Q ss_conf 0001110022320067877632100
Q gi|254780321|r 165 ALLVSAKTGEGIPLLLERIVQQLPS 189 (606)
Q Consensus 165 ii~vSAktG~GV~~LLd~Iv~~iP~ 189 (606)
++++||+.+.|+..|++.+.+.++.
T Consensus 80 ~~~~sa~~~~~~~~l~~~~~~~~~~ 104 (276)
T TIGR03596 80 ALAINAKKGKGVKKIIKAAKKLLKE 104 (276)
T ss_pred EEEEHHCCCCCHHHHHHHHHHHHHH
T ss_conf 8986430745389999999999999
No 310
>KOG1532 consensus
Probab=97.78 E-value=2.8e-05 Score=54.95 Aligned_cols=174 Identities=21% Similarity=0.385 Sum_probs=91.8
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCC-------------------CCCCEEECCCHHHHH------HCCEEEEEEEE
Q ss_conf 79998013898778899999982980544-------------------443113058677987------19505232799
Q gi|254780321|r 13 NFSIVAHIDHGKSTLADRFIQHCRGLTER-------------------EMSSQVLDNMDIERE------RGITIKAQTVR 67 (606)
Q Consensus 13 N~~IiaHvDhGKTTL~d~lL~~tg~i~~~-------------------~~~~~vlD~~~~Ere------RGITIka~~~~ 67 (606)
-|-++|-.++||||.+-||......-..+ +..++ .++-++=++ -||+--.+-..
T Consensus 21 ~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYviNLDPAv~~vpy~aniDIRDt-VkYkEvMkqY~LGPNGgI~TsLNLF~ 99 (366)
T KOG1532 21 IILVVGMAGSGKTTFMQRLNSHLHAKKTPPYVINLDPAVRNVPYPANIDIRDT-VKYKEVMKQYQLGPNGGIVTSLNLFA 99 (366)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEECCHHHHCCCCCCCCCHHHH-HHHHHHHHHHCCCCCCCHHHHHHHHH
T ss_conf 79999447788413999999998623699808867888854888667756654-30999999838899864033589999
Q ss_pred E------EEECCCCCEEEEEEEECCCCCH-HH-----HHHHHHHHHC-C-EEEEEEECCCCCCHHHH-HHH-H---HHHH
Q ss_conf 9------9743788438999961787300-27-----9999999730-2-68999986878865589-999-9---9997
Q gi|254780321|r 68 L------NYTSTDAKDYQLNLIDTPGHVD-FT-----YEVSRSLSAC-E-GSLLVVDATQGVEAQTL-ANV-Y---QAID 128 (606)
Q Consensus 68 ~------~~~~~~~~~y~iNlIDTPGH~D-F~-----~EV~r~l~a~-d-gaiLvVdA~~Gvq~QT~-~~~-~---~A~~ 128 (606)
. .+-......+..-||||||... |. +-...+|+.. . -.+-|||....--|-|. .|. | +.-.
T Consensus 100 tk~dqv~~~iek~~~~~~~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~~p~tFMSNMlYAcSilyk 179 (366)
T KOG1532 100 TKFDQVIELIEKRAEEFDYVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRSTSPTTFMSNMLYACSILYK 179 (366)
T ss_pred HHHHHHHHHHHHHHCCCCEEEECCCCCEEEEEECCCCCCHHHHHHHCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 87899999999742204779974888068998427850158667613985999994477678841699889999999986
Q ss_pred CCCCEEEEECCCCCCCCCC--------CCHHHHHHHH-----------HHH------HHHHHHHHHHHCCCCCCHHHHHH
Q ss_conf 0996799832678875321--------1338887755-----------532------23210001110022320067877
Q gi|254780321|r 129 NNHEIITVLNKADLPSADP--------DRVKKQIEET-----------IGI------STEDALLVSAKTGEGIPLLLERI 183 (606)
Q Consensus 129 ~~l~~I~viNKiD~~~A~~--------e~v~~ei~~~-----------~g~------~~~~ii~vSAktG~GV~~LLd~I 183 (606)
..||.|++.||.|..++.+ |.-.+-+.+. +.+ ..-..+.||+.+|.|.++++.+|
T Consensus 180 tklp~ivvfNK~Dv~d~~fa~eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~lrtv~VSs~tG~G~ddf~~av 259 (366)
T KOG1532 180 TKLPFIVVFNKTDVSDSEFALEWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFYRSLRTVGVSSVTGEGFDDFFTAV 259 (366)
T ss_pred CCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCCHHHHHHHH
T ss_conf 26876999714344561889999999999999997630326677665479899999831755777404578678899999
Q ss_pred HHHH
Q ss_conf 6321
Q gi|254780321|r 184 VQQL 187 (606)
Q Consensus 184 v~~i 187 (606)
-+.+
T Consensus 260 ~~~v 263 (366)
T KOG1532 260 DESV 263 (366)
T ss_pred HHHH
T ss_conf 9999
No 311
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=97.74 E-value=0.00058 Score=46.10 Aligned_cols=101 Identities=24% Similarity=0.399 Sum_probs=74.6
Q ss_pred EEEECCCCCCHHHHHHHHHHH-CC-CCCCCCCCCEEECCCHHHHHHC-CEEEEEEEEEEEECCCCCEEEEEEEECCCCCH
Q ss_conf 999801389877889999998-29-8054444311305867798719-50523279999743788438999961787300
Q gi|254780321|r 14 FSIVAHIDHGKSTLADRFIQH-CR-GLTEREMSSQVLDNMDIERERG-ITIKAQTVRLNYTSTDAKDYQLNLIDTPGHVD 90 (606)
Q Consensus 14 ~~IiaHvDhGKTTL~d~lL~~-tg-~i~~~~~~~~vlD~~~~EreRG-ITIka~~~~~~~~~~~~~~y~iNlIDTPGH~D 90 (606)
+|++|--+.|||||.-.|... |. ++++ -|| ||+- .|+.-+|+|+.|| .|
T Consensus 72 vavvGPpGtGKsTLirSlVrr~tk~ti~~---------------i~GPiTvv-----------sgK~RRiTflEcp--~D 123 (1077)
T COG5192 72 VAVVGPPGTGKSTLIRSLVRRFTKQTIDE---------------IRGPITVV-----------SGKTRRITFLECP--SD 123 (1077)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHHHHHC---------------CCCCEEEE-----------ECCEEEEEEEECH--HH
T ss_conf 99636998874689999999987754203---------------67864786-----------1563578988671--78
Q ss_pred HHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCC-EEEEECCCCCC
Q ss_conf 279999999730268999986878865589999999970996-79983267887
Q gi|254780321|r 91 FTYEVSRSLSACEGSLLVVDATQGVEAQTLANVYQAIDNNHE-IITVLNKADLP 143 (606)
Q Consensus 91 F~~EV~r~l~a~dgaiLvVdA~~Gvq~QT~~~~~~A~~~~l~-~I~viNKiD~~ 143 (606)
.+.-+- .-..+|-+||+||+.-|.+-.|.+-+.++..+|+| ++-|++.+|+-
T Consensus 124 l~~miD-vaKIaDLVlLlIdgnfGfEMETmEFLnil~~HGmPrvlgV~ThlDlf 176 (1077)
T COG5192 124 LHQMID-VAKIADLVLLLIDGNFGFEMETMEFLNILISHGMPRVLGVVTHLDLF 176 (1077)
T ss_pred HHHHHH-HHHHHHEEEEEECCCCCCEEHHHHHHHHHHHCCCCCEEEEEEECCCC
T ss_conf 888876-88752135788636667042488999998664897247888621133
No 312
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=97.68 E-value=0.00015 Score=50.00 Aligned_cols=86 Identities=23% Similarity=0.203 Sum_probs=59.9
Q ss_pred CEEEEEEECCCCCCHHHHHHHH-HHHHCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHH
Q ss_conf 2689999868788655899999-999709967998326788753211338887755532232100011100223200678
Q gi|254780321|r 103 EGSLLVVDATQGVEAQTLANVY-QAIDNNHEIITVLNKADLPSADPDRVKKQIEETIGISTEDALLVSAKTGEGIPLLLE 181 (606)
Q Consensus 103 dgaiLvVdA~~Gvq~QT~~~~~-~A~~~~l~~I~viNKiD~~~A~~e~v~~ei~~~~g~~~~~ii~vSAktG~GV~~LLd 181 (606)
|-.|.|+||..|.-..-..... +....+-++|+|+||+|+- +.+...+-+..+........+++||+.+.|+..+++
T Consensus 1 D~il~VvDaR~pl~~~~~~~~~~l~~~~~K~~ilvlNK~Dl~--~~~~~~~w~~~~~~~~~~~~~~~S~~~~~~~~~~~~ 78 (155)
T cd01849 1 DVILEVLDARDPLGTRSPDIERVLIKEKGKKLILVLNKADLV--PKEVLRKWLAYLRHSYPTIPFKISATNGQGIEKKES 78 (155)
T ss_pred CEEEEEEECCCCCCCCCHHHHHHHHHCCCCCEEEEEECCCCC--CHHHHHHHHHHHHHCCCCCEEEHHHCCCCCHHHHHH
T ss_conf 989999968799998899999999865899489997673458--989999999999962998516711026745688999
Q ss_pred HHHHHHHCC
Q ss_conf 776321000
Q gi|254780321|r 182 RIVQQLPSP 190 (606)
Q Consensus 182 ~Iv~~iP~P 190 (606)
.+.......
T Consensus 79 ~~~~~~~~~ 87 (155)
T cd01849 79 AFTKQTNSN 87 (155)
T ss_pred HHHHHHHHH
T ss_conf 999871566
No 313
>PRK09563 rbgA ribosomal biogenesis GTPase; Reviewed
Probab=97.68 E-value=0.00017 Score=49.62 Aligned_cols=99 Identities=27% Similarity=0.340 Sum_probs=70.3
Q ss_pred CCCCH-HHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 87300-27999999973026899998687886558999999997099679983267887532113388877555322321
Q gi|254780321|r 86 PGHVD-FTYEVSRSLSACEGSLLVVDATQGVEAQTLANVYQAIDNNHEIITVLNKADLPSADPDRVKKQIEETIGISTED 164 (606)
Q Consensus 86 PGH~D-F~~EV~r~l~a~dgaiLvVdA~~Gvq~QT~~~~~~A~~~~l~~I~viNKiD~~~A~~e~v~~ei~~~~g~~~~~ 164 (606)
|||.- -.-+..+.+..+|-.|.|+||....-..-..... .. .+-++|+|+||+|+.. + +..++..+.+.-....
T Consensus 8 PGHm~ka~r~l~~~l~~~DvileV~DAR~Pl~~~n~~l~~-~~-~~K~~ilvlNK~DL~~--~-~~~~~w~~~~~~~~~~ 82 (282)
T PRK09563 8 PGHMAKARREIKENLKKVDVVIEVLDARIPLSSENPMIDK-II-GNKPRLLVLNKSDLAD--P-EVTKKWIEYFEEQGVK 82 (282)
T ss_pred HHHHHHHHHHHHHHHHHCCEEEEEEECCCCCCCCCHHHHH-HH-CCCCEEEEEECCCCCC--H-HHHHHHHHHHHHCCCC
T ss_conf 8899999999999987699999997654776758875999-97-6897699975554889--9-9999999999704995
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHC
Q ss_conf 0001110022320067877632100
Q gi|254780321|r 165 ALLVSAKTGEGIPLLLERIVQQLPS 189 (606)
Q Consensus 165 ii~vSAktG~GV~~LLd~Iv~~iP~ 189 (606)
++++||+.+.|+..|++.+.+..+.
T Consensus 83 ~~~~sa~~~~~~~~l~~~~~~~~~~ 107 (282)
T PRK09563 83 ALAINAKEGQGVKKILKAAKKLGKE 107 (282)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 6997466743388999999999999
No 314
>KOG4252 consensus
Probab=97.68 E-value=0.00035 Score=47.56 Aligned_cols=168 Identities=21% Similarity=0.232 Sum_probs=106.1
Q ss_pred CCCCCCCHHHCEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEE-ECCCHHHHHHCCEEEEEEEEEEEECCCCCEEE
Q ss_conf 98889985253179998013898778899999982980544443113-05867798719505232799997437884389
Q gi|254780321|r 1 MQKKPTPLSRIRNFSIVAHIDHGKSTLADRFIQHCRGLTEREMSSQV-LDNMDIERERGITIKAQTVRLNYTSTDAKDYQ 79 (606)
Q Consensus 1 ~~~~~~p~~~IRN~~IiaHvDhGKTTL~d~lL~~tg~i~~~~~~~~v-lD~~~~EreRGITIka~~~~~~~~~~~~~~y~ 79 (606)
|+.-++.++..--|.|+|...-||+|+.-|.. -|.+++.. +.++ .|.+ | |.|-| +.++.+
T Consensus 10 ~am~e~d~e~aiK~vivGng~VGKssmiqryC--kgifTkdy-kktIgvdfl--e--rqi~v------------~~Edvr 70 (246)
T KOG4252 10 MAMDETDYERAIKFVIVGNGSVGKSSMIQRYC--KGIFTKDY-KKTIGVDFL--E--RQIKV------------LIEDVR 70 (246)
T ss_pred CCCCCHHHHHHEEEEEECCCCCCHHHHHHHHH--CCCCCCCC-CCCCCHHHH--H--HHHHH------------HHHHHH
T ss_conf 78880324553789998788624689999985--24455665-400032352--6--77774------------089999
Q ss_pred EEEEECCCCCHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHH---HHCCCCEEEEECCCCCCCCCCCCHHHHHHH
Q ss_conf 99961787300279999999730268999986878865589999999---970996799832678875321133888775
Q gi|254780321|r 80 LNLIDTPGHVDFTYEVSRSLSACEGSLLVVDATQGVEAQTLANVYQA---IDNNHEIITVLNKADLPSADPDRVKKQIEE 156 (606)
Q Consensus 80 iNlIDTPGH~DF~~EV~r~l~a~dgaiLvVdA~~Gvq~QT~~~~~~A---~~~~l~~I~viNKiD~~~A~~e~v~~ei~~ 156 (606)
+-+.||-|...|-.-...-.+.+++.+||.+-++----.-...|+-- .-..+|.+.|-||||+..- ----..+++.
T Consensus 71 ~mlWdtagqeEfDaItkAyyrgaqa~vLVFSTTDr~SFea~~~w~~kv~~e~~~IPtV~vqNKIDlved-s~~~~~evE~ 149 (246)
T KOG4252 71 SMLWDTAGQEEFDAITKAYYRGAQASVLVFSTTDRYSFEATLEWYNKVQKETERIPTVFVQNKIDLVED-SQMDKGEVEG 149 (246)
T ss_pred HHHHHHCCCHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHH-HHCCHHHHHH
T ss_conf 999872231667789998742564048998545177789999999999987556875876422005676-5213588899
Q ss_pred HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q ss_conf 55322321000111002232006787763210
Q gi|254780321|r 157 TIGISTEDALLVSAKTGEGIPLLLERIVQQLP 188 (606)
Q Consensus 157 ~~g~~~~~ii~vSAktG~GV~~LLd~Iv~~iP 188 (606)
+.-.-.-....+|++..+||..++..+.+..-
T Consensus 150 lak~l~~RlyRtSvked~NV~~vF~YLaeK~~ 181 (246)
T KOG4252 150 LAKKLHKRLYRTSVKEDFNVMHVFAYLAEKLT 181 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99986434321666654006779999999999
No 315
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=97.64 E-value=0.0013 Score=43.76 Aligned_cols=136 Identities=24% Similarity=0.383 Sum_probs=79.3
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCHHH-HHHCCEEEEEEEEEEEECCCCCEEEEEEEECCCCCHH
Q ss_conf 799980138987788999999829805444431130586779-8719505232799997437884389999617873002
Q gi|254780321|r 13 NFSIVAHIDHGKSTLADRFIQHCRGLTEREMSSQVLDNMDIE-RERGITIKAQTVRLNYTSTDAKDYQLNLIDTPGHVDF 91 (606)
Q Consensus 13 N~~IiaHvDhGKTTL~d~lL~~tg~i~~~~~~~~vlD~~~~E-reRGITIka~~~~~~~~~~~~~~y~iNlIDTPGH~DF 91 (606)
|+-++|-.+.||||+.-.|+..+ ..... -.|....+ .+.++.|....+-+. .++-...+|+|||||.-||
T Consensus 25 ~im~~G~sG~GKttfiNtL~~~~-l~~~~-----~~~~~~~~~~~~~~~i~~~~~~l~---e~~~~~~l~vIDtpGfGD~ 95 (373)
T COG5019 25 TIMVVGESGLGKTTFINTLFGTS-LVDET-----EIDDIRAEGTSPTLEIKITKAELE---EDGFHLNLTVIDTPGFGDF 95 (373)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH-CCCCC-----CCCCCCCCCCCCCEEEEEEEEEEE---CCCEEEEEEEECCCCCCCC
T ss_conf 89996278875557887656765-25777-----755766666776258886431660---4874898888615886565
Q ss_pred HH-----HH-------------------HHHHHHCC----EEEEEEEC-CCCCCHHHHHHHHHHHHCCCCEEEEECCCCC
Q ss_conf 79-----99-------------------99997302----68999986-8788655899999999709967998326788
Q gi|254780321|r 92 TY-----EV-------------------SRSLSACE----GSLLVVDA-TQGVEAQTLANVYQAIDNNHEIITVLNKADL 142 (606)
Q Consensus 92 ~~-----EV-------------------~r~l~a~d----gaiLvVdA-~~Gvq~QT~~~~~~A~~~~l~~I~viNKiD~ 142 (606)
.- |. .|.-+..| ++|..+.- ..|+.++-++.+ +.+....-+||||-|-|.
T Consensus 96 idNs~~we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh~l~~~DIe~M-k~ls~~vNlIPVI~KaD~ 174 (373)
T COG5019 96 IDNSKCWEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGHGLKPLDIEAM-KRLSKRVNLIPVIAKADT 174 (373)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEEECCCCCCCCHHHHHHH-HHHHCCCCEEEEEECCCC
T ss_conf 4641017999999999999999986434556654468248999984689887878889999-998533675656624665
Q ss_pred CCCC-CCCHHHHHHHHH
Q ss_conf 7532-113388877555
Q gi|254780321|r 143 PSAD-PDRVKKQIEETI 158 (606)
Q Consensus 143 ~~A~-~e~v~~ei~~~~ 158 (606)
-..+ ...+++.|.+.+
T Consensus 175 lT~~El~~~K~~I~~~i 191 (373)
T COG5019 175 LTDDELAEFKERIREDL 191 (373)
T ss_pred CCHHHHHHHHHHHHHHH
T ss_conf 89999999999999999
No 316
>cd03694 GTPBP_II Domain II of the GP-1 family of GTPase. This group includes proteins similar to GTPBP1 and GTPBP2. GTPB1 is structurally, related to elongation factor 1 alpha, a key component of protein biosynthesis machinery. Immunohistochemical analyses on mouse tissues revealed that GTPBP1 is expressed in some neurons and smooth muscle cells of various organs as well as macrophages. Immunofluorescence analyses revealed that GTPBP1 is localized exclusively in cytoplasm and shows a diffuse granular network forming a gradient from the nucleus to the periphery of the cells in smooth muscle cell lines and macrophages. No significant difference was observed in the immune response to protein antigen between mutant mice and wild-type mice, suggesting normal function of antigen-presenting cells of the mutant mice. The absence of an eminent phenotype in GTPBP1-deficient mice may be due to functional compensation by GTPBP2, which is similar to GTPBP1 in structure and tissue distribution.
Probab=97.60 E-value=6.7e-05 Score=52.37 Aligned_cols=82 Identities=12% Similarity=0.176 Sum_probs=57.1
Q ss_pred CCCCCEEECCCCCEEEEEEECCCCCCCCCEEEEECCC-CCCCCCCCCCCCCCEEEEHHCCCCC-HHHHHHCCCCCCCCCC
Q ss_conf 1012101147572599998169873558458873355-6421012223355412401012471-2332201100244445
Q gi|254780321|r 202 ALLIDSWYNSYLGVMVLVRIINGQLTKGQSIRLMGTN-AKYQVERIGILTPKMIDIEALYPGE-IGVMIASIKEVSHTRV 279 (606)
Q Consensus 202 alVfds~~D~~~G~I~~~RV~sG~lk~Gd~I~~~~~g-~~~~v~~ig~~~~~~~~v~~l~aGd-VG~ii~gik~l~~~~v 279 (606)
+.|-+.+.=+.+|.|..+++.+|+++.||++.+.+.+ ..+...++.-++.++.+++++.||| +|..+.+++ .++++-
T Consensus 3 ~~ID~vf~v~G~GtVVtGtv~~G~i~~gd~v~i~P~~~G~f~~v~VrsIq~~~~~v~~a~aG~~~~~~l~~i~-~~~i~r 81 (87)
T cd03694 3 FQIDEIYSVPGVGTVVGGTVSKGVIRLGDTLLLGPDQDGSFRPVTVKSIHRNRSPVRVVRAGQSASLALKKID-RSLLRK 81 (87)
T ss_pred CCCEEEEECCCEEEEEEEEECCCCCCCCCEEEEECCCCCCEEEEEEEEEEECCCCCCEECCCCEEEEEECCCC-HHHCCC
T ss_conf 6531379869856898999845715389999992167896677899889988829789769989889986999-999067
Q ss_pred CCEEC
Q ss_conf 42000
Q gi|254780321|r 280 GDTIT 284 (606)
Q Consensus 280 GDTl~ 284 (606)
|+-|.
T Consensus 82 G~VL~ 86 (87)
T cd03694 82 GMVLV 86 (87)
T ss_pred CCEEE
T ss_conf 66996
No 317
>PRK12288 ribosome-associated GTPase; Reviewed
Probab=97.58 E-value=0.00021 Score=49.02 Aligned_cols=84 Identities=24% Similarity=0.272 Sum_probs=53.7
Q ss_pred HHHH-CCEEEEEEECCCCCCHHHHH---HHHHHHHCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHH---HHHHHHHHH
Q ss_conf 9973-02689999868788655899---9999997099679983267887532113388877555322---321000111
Q gi|254780321|r 98 SLSA-CEGSLLVVDATQGVEAQTLA---NVYQAIDNNHEIITVLNKADLPSADPDRVKKQIEETIGIS---TEDALLVSA 170 (606)
Q Consensus 98 ~l~a-~dgaiLvVdA~~Gvq~QT~~---~~~~A~~~~l~~I~viNKiD~~~A~~e~v~~ei~~~~g~~---~~~ii~vSA 170 (606)
.++| .|-+++|+.+ + +.+.+.. -+-.|...|+++++++||+|+.+.+ ...++++++... .-+++++||
T Consensus 118 ~iAANIDqvlIV~A~-~-P~~~~~liDRyLv~ae~~~I~pvIvlNK~DL~~~~---~~~~~~~~l~~Y~~lGY~v~~~Sa 192 (344)
T PRK12288 118 PIAANIDQIVIVSAV-L-PELSLNIIDRYLVACETLGIEPLIVLNKIDLLDDE---ERPFVNEQLDIYRNIGYRVLMVSS 192 (344)
T ss_pred EEEEECCEEEEEEEC-C-CCCCHHHHHHHHHHHHHCCCCEEEEEECHHCCCHH---HHHHHHHHHHHHHHCCCEEEEEEC
T ss_conf 579716889999968-9-99897899999999998699779997314408977---899999999999867973999736
Q ss_pred HCCCCCCHHHHHHHHH
Q ss_conf 0022320067877632
Q gi|254780321|r 171 KTGEGIPLLLERIVQQ 186 (606)
Q Consensus 171 ktG~GV~~LLd~Iv~~ 186 (606)
++|.|+++|.+.+-.+
T Consensus 193 ~~~~gl~~L~~~L~~k 208 (344)
T PRK12288 193 HTGEGLEPLEAALTGR 208 (344)
T ss_pred CCCCCHHHHHHHHCCC
T ss_conf 8862899999987678
No 318
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=97.54 E-value=0.00067 Score=45.65 Aligned_cols=132 Identities=17% Similarity=0.202 Sum_probs=73.2
Q ss_pred EEEE-CCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCH----------HHHHHCCEEEEEEEEEEEECCCCCEEEEEE
Q ss_conf 9998-01389877889999998298054444311305867----------798719505232799997437884389999
Q gi|254780321|r 14 FSIV-AHIDHGKSTLADRFIQHCRGLTEREMSSQVLDNMD----------IERERGITIKAQTVRLNYTSTDAKDYQLNL 82 (606)
Q Consensus 14 ~~Ii-aHvDhGKTTL~d~lL~~tg~i~~~~~~~~vlD~~~----------~EreRGITIka~~~~~~~~~~~~~~y~iNl 82 (606)
|+|+ +-.+-||||++-.|-. .+.+++..--+.|.+. .+.+-..|+ ...-+.||. +
T Consensus 2 Iav~s~KGGVGKTT~a~NLA~---aLa~~g~~vllvD~D~~~~~l~~~~~~~~~~~~~~---------~~vl~gD~v--i 67 (179)
T cd02036 2 IVVTSGKGGVGKTTTTANLGT---ALAQLGYKVVLIDADLGLRNLDLILGLENRVVYTL---------HDVLAGDYI--L 67 (179)
T ss_pred EEEECCCCCCHHHHHHHHHHH---HHHHCCCCEEEEECCCCCCCCHHHCCCCCCCCCHH---------HCCCCCCEE--E
T ss_conf 899739998709999999999---99977991899958999998366617655665313---------112669999--9
Q ss_pred EECCCCCHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEE-EEECCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 6178730027999999973026899998687886558999999997099679-983267887532113388877555322
Q gi|254780321|r 83 IDTPGHVDFTYEVSRSLSACEGSLLVVDATQGVEAQTLANVYQAIDNNHEII-TVLNKADLPSADPDRVKKQIEETIGIS 161 (606)
Q Consensus 83 IDTPGH~DF~~EV~r~l~a~dgaiLvVdA~~Gvq~QT~~~~~~A~~~~l~~I-~viNKiD~~~A~~e~v~~ei~~~~g~~ 161 (606)
||||.-. +..+..++.++|.+++|+...---..-+...+.++.+.+.+.+ +++|+.+......+...+++++.+|++
T Consensus 68 iD~ppg~--~~~~~~~l~~ad~vlvv~~p~~~sl~~~~~~~~~~~~~~~~~~~vv~Nr~~~~~~~~~~~~~~~~~~l~~~ 145 (179)
T cd02036 68 IDSPAGI--ERGFITAIAPADEALLVTTPEISSLRDADRVKGLLEALGIKVVGVIVNRVRPDMVEGGDMVEDIEEILGVP 145 (179)
T ss_pred EECCCCC--CHHHHHHHHHCCCCEECCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHHCCCC
T ss_conf 9799998--88999999846812563788588999999999999825996469998454676663677999999855996
No 319
>KOG0410 consensus
Probab=97.54 E-value=0.0012 Score=43.92 Aligned_cols=147 Identities=22% Similarity=0.234 Sum_probs=88.9
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHCCEEEEEEEEEEEECCCCCEEEEEEEECCCCC---
Q ss_conf 79998013898778899999982980544443113058677987195052327999974378843899996178730---
Q gi|254780321|r 13 NFSIVAHIDHGKSTLADRFIQHCRGLTEREMSSQVLDNMDIERERGITIKAQTVRLNYTSTDAKDYQLNLIDTPGHV--- 89 (606)
Q Consensus 13 N~~IiaHvDhGKTTL~d~lL~~tg~i~~~~~~~~vlD~~~~EreRGITIka~~~~~~~~~~~~~~y~iNlIDTPGH~--- 89 (606)
-|+++|--.+|||||.-+|- .+. +. ..+|+--++|--.. .+.+ .+|+... +.||=|..
T Consensus 180 viavVGYTNaGKsTLikaLT-~Aa-l~---p~drLFATLDpT~h--------~a~L----psg~~vl--ltDTvGFisdL 240 (410)
T KOG0410 180 VIAVVGYTNAGKSTLIKALT-KAA-LY---PNDRLFATLDPTLH--------SAHL----PSGNFVL--LTDTVGFISDL 240 (410)
T ss_pred EEEEEEECCCCHHHHHHHHH-HHH-CC---CCCHHHEECCCHHH--------HCCC----CCCCEEE--EEECHHHHHHC
T ss_conf 28999634766889999987-500-58---30001101253134--------3007----9986799--96034666547
Q ss_pred ------HHHHHHHHHHHHCCEEEEEEECCCC-CCHHHHHHHHHHHHCCCCEEE-------EECCCCCCCCCCCCHHHHHH
Q ss_conf ------0279999999730268999986878-865589999999970996799-------83267887532113388877
Q gi|254780321|r 90 ------DFTYEVSRSLSACEGSLLVVDATQG-VEAQTLANVYQAIDNNHEIIT-------VLNKADLPSADPDRVKKQIE 155 (606)
Q Consensus 90 ------DF~~EV~r~l~a~dgaiLvVdA~~G-vq~QT~~~~~~A~~~~l~~I~-------viNKiD~~~A~~e~v~~ei~ 155 (606)
-|..-.+. ..-+|--|-|+|.+.- .+.|-..++..-.+.|++.+| |=||+|...+.++.
T Consensus 241 P~~LvaAF~ATLee-VaeadlllHvvDiShP~ae~q~e~Vl~vL~~igv~~~pkl~~mieVdnkiD~e~~~~e~------ 313 (410)
T KOG0410 241 PIQLVAAFQATLEE-VAEADLLLHVVDISHPNAEEQRETVLHVLNQIGVPSEPKLQNMIEVDNKIDYEEDEVEE------ 313 (410)
T ss_pred CHHHHHHHHHHHHH-HHHCCEEEEEEECCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCCCC------
T ss_conf 49999999999998-75234489986157966888898999999746998477776787421235665566753------
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCC
Q ss_conf 55532232100011100223200678776321000
Q gi|254780321|r 156 ETIGISTEDALLVSAKTGEGIPLLLERIVQQLPSP 190 (606)
Q Consensus 156 ~~~g~~~~~ii~vSAktG~GV~~LLd~Iv~~iP~P 190 (606)
+....+++||++|.|++++++++-+.+-.-
T Consensus 314 -----E~n~~v~isaltgdgl~el~~a~~~kv~~~ 343 (410)
T KOG0410 314 -----EKNLDVGISALTGDGLEELLKAEETKVASE 343 (410)
T ss_pred -----CCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf -----557851430156754799999888876543
No 320
>PRK00098 ribosome-associated GTPase; Reviewed
Probab=97.51 E-value=0.00041 Score=47.08 Aligned_cols=86 Identities=26% Similarity=0.282 Sum_probs=54.7
Q ss_pred HHHHH-CCEEEEEEECCC-CCCHHHH-HHHHHHHHCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 99973-026899998687-8865589-99999997099679983267887532113388877555322321000111002
Q gi|254780321|r 97 RSLSA-CEGSLLVVDATQ-GVEAQTL-ANVYQAIDNNHEIITVLNKADLPSADPDRVKKQIEETIGISTEDALLVSAKTG 173 (606)
Q Consensus 97 r~l~a-~dgaiLvVdA~~-Gvq~QT~-~~~~~A~~~~l~~I~viNKiD~~~A~~e~v~~ei~~~~g~~~~~ii~vSAktG 173 (606)
+.++| +|-+++|+++.+ -....-+ .-+-.|...|+++++++||+|+.. +.+.... ..+.+.--.-+++++||+++
T Consensus 75 q~iAANiD~~~iV~s~~~P~~~~~~idR~Lv~a~~~~i~pvivlnK~DL~~-~~~~~~~-~~~~y~~~gy~v~~~S~~~~ 152 (298)
T PRK00098 75 KLIAANVDQAVIVFAAKEPDFSTDLLDRFLVLAEANDIKPIIVLNKIDLVD-DLEEARE-RLALYRAIGYDVLELSAKEG 152 (298)
T ss_pred CEEEEECCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCC-CHHHHHH-HHHHHHHCCCCEEEEECCCC
T ss_conf 327874478999985688989989999999999986995899964245647-7999999-99999878997899968999
Q ss_pred CCCCHHHHHHH
Q ss_conf 23200678776
Q gi|254780321|r 174 EGIPLLLERIV 184 (606)
Q Consensus 174 ~GV~~LLd~Iv 184 (606)
.|+++|.+.+-
T Consensus 153 ~g~~~L~~~l~ 163 (298)
T PRK00098 153 PGLDELKPLLA 163 (298)
T ss_pred CCHHHHHHHHC
T ss_conf 89999999857
No 321
>KOG0072 consensus
Probab=97.38 E-value=0.00076 Score=45.29 Aligned_cols=108 Identities=17% Similarity=0.276 Sum_probs=67.4
Q ss_pred CEEEEEEEECCCCCHHHHHHHHH-HHHCCEEEEEEECCCCCCHHHHHH-H-HHHHH---CCCCEEEEECCCCCCCCCCCC
Q ss_conf 43899996178730027999999-973026899998687886558999-9-99997---099679983267887532113
Q gi|254780321|r 76 KDYQLNLIDTPGHVDFTYEVSRS-LSACEGSLLVVDATQGVEAQTLAN-V-YQAID---NNHEIITVLNKADLPSADPDR 149 (606)
Q Consensus 76 ~~y~iNlIDTPGH~DF~~EV~r~-l~a~dgaiLvVdA~~Gvq~QT~~~-~-~~A~~---~~l~~I~viNKiD~~~A~~e~ 149 (606)
|+-++++-|--|.-...- --|. .+-+|..|.|||.++--+..+-.. + .+..+ ++-.+++|.||+|.+.+-
T Consensus 60 KNLk~~vwdLggqtSirP-yWRcYy~dt~avIyVVDssd~dris~a~~el~~mL~E~eLq~a~llv~anKqD~~~~~--- 135 (182)
T KOG0072 60 KNLKFQVWDLGGQTSIRP-YWRCYYADTDAVIYVVDSSDRDRISIAGVELYSMLQEEELQHAKLLVFANKQDYSGAL--- 135 (182)
T ss_pred CCCCCEEEECCCCCCCCH-HHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHHCCHHHCCCEEEEEECCCCCHHHH---
T ss_conf 665512467158643327-7888760666289997165434431468999998554865484699986045521355---
Q ss_pred HHHHHHHHHHHHH-----HHHHHHHHHCCCCCCHHHHHHHHHH
Q ss_conf 3888775553223-----2100011100223200678776321
Q gi|254780321|r 150 VKKQIEETIGIST-----EDALLVSAKTGEGIPLLLERIVQQL 187 (606)
Q Consensus 150 v~~ei~~~~g~~~-----~~ii~vSAktG~GV~~LLd~Iv~~i 187 (606)
...|+...++++. -.|+..||-+|.|+++.+|-+.+-+
T Consensus 136 t~~E~~~~L~l~~Lk~r~~~Iv~tSA~kg~Gld~~~DWL~~~l 178 (182)
T KOG0072 136 TRSEVLKMLGLQKLKDRIWQIVKTSAVKGEGLDPAMDWLQRPL 178 (182)
T ss_pred HHHHHHHHHCHHHHHHHEEEEEEECCCCCCCCCHHHHHHHHHH
T ss_conf 6999999848288750226887601144667767899998777
No 322
>COG1162 Predicted GTPases [General function prediction only]
Probab=97.36 E-value=0.00058 Score=46.07 Aligned_cols=84 Identities=26% Similarity=0.269 Sum_probs=56.7
Q ss_pred CCEEEEEEECCCCCC-HHHHH-HHHHHHHCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHH
Q ss_conf 026899998687886-55899-9999997099679983267887532113388877555322321000111002232006
Q gi|254780321|r 102 CEGSLLVVDATQGVE-AQTLA-NVYQAIDNNHEIITVLNKADLPSADPDRVKKQIEETIGISTEDALLVSAKTGEGIPLL 179 (606)
Q Consensus 102 ~dgaiLvVdA~~Gvq-~QT~~-~~~~A~~~~l~~I~viNKiD~~~A~~e~v~~ei~~~~g~~~~~ii~vSAktG~GV~~L 179 (606)
.|-+++|+++.+.-- ..-+. -+-.|...|+.+|+++||+|+........ ++......--.-+++.+||+++.|+++|
T Consensus 80 ~d~~iiIvs~~~P~~~~~~ldR~Lv~ae~~gi~pvIvlnK~DL~~~~~~~~-~~~~~~y~~~gy~v~~~s~~~~~~~~~l 158 (301)
T COG1162 80 NDQAIIVVSLVDPDFNTNLLDRYLVLAEAGGIEPVIVLNKIDLLDDEEAAV-KELLREYEDIGYPVLFVSAKNGDGLEEL 158 (301)
T ss_pred CCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHH-HHHHHHHHHCCEEEEEECCCCCCCHHHH
T ss_conf 551999996268998988999999999776995799997533676167789-9999999867935999537676558999
Q ss_pred HHHHHHH
Q ss_conf 7877632
Q gi|254780321|r 180 LERIVQQ 186 (606)
Q Consensus 180 Ld~Iv~~ 186 (606)
.+.+-.+
T Consensus 159 ~~~l~~~ 165 (301)
T COG1162 159 AELLAGK 165 (301)
T ss_pred HHHHCCC
T ss_conf 9975588
No 323
>PRK12289 ribosome-associated GTPase; Reviewed
Probab=97.35 E-value=0.00041 Score=47.08 Aligned_cols=86 Identities=24% Similarity=0.354 Sum_probs=56.7
Q ss_pred HHHCCEEEEEEECCCC-CCHHHHH-HHHHHHHCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 9730268999986878-8655899-9999997099679983267887532113388877555322321000111002232
Q gi|254780321|r 99 LSACEGSLLVVDATQG-VEAQTLA-NVYQAIDNNHEIITVLNKADLPSADPDRVKKQIEETIGISTEDALLVSAKTGEGI 176 (606)
Q Consensus 99 l~a~dgaiLvVdA~~G-vq~QT~~-~~~~A~~~~l~~I~viNKiD~~~A~~e~v~~ei~~~~g~~~~~ii~vSAktG~GV 176 (606)
.+-+|-+++|+++.+- ..+.-+. -+-.|...++++++++||+|+.+..- .+++.+.+.--.-+++++|+++|.|+
T Consensus 86 VANvDq~liV~s~~~P~~~~~~LDRfLv~ae~~~i~~vivlnK~DL~~~~e---~~~~~~~~~~~GY~~i~iS~~~~~gl 162 (351)
T PRK12289 86 IANVDQILLVFALAEPPLDPWQLSRFLVKAESTGLEIQLCLNKADLVSPTQ---QQQWQDRLAQWGYQPLFISVEQGIGL 162 (351)
T ss_pred CCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEEHHHCCCHHH---HHHHHHHHHHCCCCEEEEECCCCCCH
T ss_conf 567035999996578998877999999999987997899986577499899---99999999977982899967899689
Q ss_pred CHHHHHHHHHH
Q ss_conf 00678776321
Q gi|254780321|r 177 PLLLERIVQQL 187 (606)
Q Consensus 177 ~~LLd~Iv~~i 187 (606)
++|.+.+-..+
T Consensus 163 ~~L~~~L~~k~ 173 (351)
T PRK12289 163 EALLKQLRNKI 173 (351)
T ss_pred HHHHHHHCCCE
T ss_conf 99999875986
No 324
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=97.34 E-value=0.00048 Score=46.65 Aligned_cols=83 Identities=28% Similarity=0.317 Sum_probs=53.2
Q ss_pred HHHH-CCEEEEEEECCCC-CCHHHHH-HHHHHHHCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 9973-0268999986878-8655899-99999970996799832678875321133888775553223210001110022
Q gi|254780321|r 98 SLSA-CEGSLLVVDATQG-VEAQTLA-NVYQAIDNNHEIITVLNKADLPSADPDRVKKQIEETIGISTEDALLVSAKTGE 174 (606)
Q Consensus 98 ~l~a-~dgaiLvVdA~~G-vq~QT~~-~~~~A~~~~l~~I~viNKiD~~~A~~e~v~~ei~~~~g~~~~~ii~vSAktG~ 174 (606)
.+.| +|-+++|+++.+- +.+.-+. -+-+|...|+++++++||+|+....-+....+....+ .-+++.+||+++.
T Consensus 74 ~iaANiD~v~IV~s~~~p~~~~~~idR~Lv~a~~~~i~pvivlnK~DL~~~~~~~~~~~~~~~~---gy~v~~~S~~~~~ 150 (287)
T cd01854 74 VIAANVDQLVIVVSLNEPFFNPRLLDRYLVAAEAAGIEPVIVLTKADLLDDEEEELELVEALAL---GYPVLAVSAKTGE 150 (287)
T ss_pred EEEECCCEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECHHCCCCHHHHHHHHHHHCC---CCEEEEEECCCCC
T ss_conf 8997266899995268998998999999999997799689999862219948999999998729---9849999668985
Q ss_pred CCCHHHHHH
Q ss_conf 320067877
Q gi|254780321|r 175 GIPLLLERI 183 (606)
Q Consensus 175 GV~~LLd~I 183 (606)
|+++|.+.+
T Consensus 151 g~~~L~~~l 159 (287)
T cd01854 151 GLDELREYL 159 (287)
T ss_pred CHHHHHHHH
T ss_conf 889999874
No 325
>PRK01889 ribosome-associated GTPase; Reviewed
Probab=97.34 E-value=0.00071 Score=45.50 Aligned_cols=80 Identities=23% Similarity=0.298 Sum_probs=56.3
Q ss_pred CCEEEEEEECCCCCCHHHHH-HHHHHHHCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHH
Q ss_conf 02689999868788655899-99999970996799832678875321133888775553223210001110022320067
Q gi|254780321|r 102 CEGSLLVVDATQGVEAQTLA-NVYQAIDNNHEIITVLNKADLPSADPDRVKKQIEETIGISTEDALLVSAKTGEGIPLLL 180 (606)
Q Consensus 102 ~dgaiLvVdA~~Gvq~QT~~-~~~~A~~~~l~~I~viNKiD~~~A~~e~v~~ei~~~~g~~~~~ii~vSAktG~GV~~LL 180 (606)
+|-+++|.++..-..+.-+. -+-+|.+.|+++++|+||+|+.. +.+....+++.+ . ..-.++.+||++|.|++.|.
T Consensus 112 iD~v~IV~s~~~~fn~~rieRyLv~a~~~g~~pvivLnK~DL~~-d~~~~~~~~~~~-~-~g~~v~~vSa~~~~gl~~L~ 188 (353)
T PRK01889 112 VDTVFIVCSLNHDFNLRRIERYLALAWESGAEPVVVLTKADLCE-DVEEKIAEVEAL-A-PGVPVLAVNALDGEGVDALQ 188 (353)
T ss_pred CCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCC-CHHHHHHHHHHH-C-CCCEEEEEECCCCCCHHHHH
T ss_conf 76899995289997978999999999986996799996655667-999999999985-5-99759999789984789999
Q ss_pred HHHH
Q ss_conf 8776
Q gi|254780321|r 181 ERIV 184 (606)
Q Consensus 181 d~Iv 184 (606)
+.+-
T Consensus 189 ~~l~ 192 (353)
T PRK01889 189 AWLK 192 (353)
T ss_pred HHHH
T ss_conf 9863
No 326
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=97.31 E-value=0.00086 Score=44.93 Aligned_cols=91 Identities=18% Similarity=0.105 Sum_probs=58.9
Q ss_pred HHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHH--CCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHH-HHHHHHHH
Q ss_conf 99999973026899998687886558999999997--0996799832678875321133888775553223-21000111
Q gi|254780321|r 94 EVSRSLSACEGSLLVVDATQGVEAQTLANVYQAID--NNHEIITVLNKADLPSADPDRVKKQIEETIGIST-EDALLVSA 170 (606)
Q Consensus 94 EV~r~l~a~dgaiLvVdA~~Gvq~QT~~~~~~A~~--~~l~~I~viNKiD~~~A~~e~v~~ei~~~~g~~~-~~ii~vSA 170 (606)
|+.|++..||-+|.|+||..+.-..-........+ .+-++|+|+||+|+. +++. .++-...++-+. .-.+.+|+
T Consensus 1 ql~~~i~~aD~vl~V~DaR~p~ss~n~~l~~~lr~~~~~K~~i~VlNK~Dl~--~~~~-~~~w~~~l~~~~~~~~~~~s~ 77 (157)
T cd01858 1 ELYKVIDSSDVVIQVLDARDPMGTRCKHVEEYLKKEKPHKHLIFVLNKCDLV--PTWV-TARWVKILSKEYPTIAFHASI 77 (157)
T ss_pred CHHHHHHHCCEEEEEEECCCCCCCCCHHHHHHHHHCCCCCCEEEEEECCCCC--CHHH-HHHHHHHHCCCCCEEEEEEEC
T ss_conf 9889787599999998898888878989999987537999789999894479--8789-999999864889739999532
Q ss_pred HCCCCCCHHHHHHHHHH
Q ss_conf 00223200678776321
Q gi|254780321|r 171 KTGEGIPLLLERIVQQL 187 (606)
Q Consensus 171 ktG~GV~~LLd~Iv~~i 187 (606)
....|...|++.+-++.
T Consensus 78 ~~~~~~~~l~~~l~~~~ 94 (157)
T cd01858 78 NNPFGKGSLIQLLRQFS 94 (157)
T ss_pred CCCCCHHHHHHHHHHHH
T ss_conf 38646899999999876
No 327
>TIGR00436 era GTP-binding protein Era; InterPro: IPR005662 Era is an essential G-protein in Escherichia coli identified originally as a homologue protein to Ras (E. coli Ras-like protein). It binds to GTP/GDP and contains a low intrinsic GTPase activity. Its function remains elusive, although it may be associated with cell division, energy metabolism, and cell-cycle check point. The protein has recently been shown to specifically bind to 16S rRNA and the 30S ribosomal subunit . Involvement of Era in protein synthesis is suggested by the fact that Era depletion results in the translation defect both in vitro and in vivo. A Type 2 KH domain is found near the C-terminus. ; GO: 0003723 RNA binding, 0005525 GTP binding, 0005622 intracellular.
Probab=97.23 E-value=0.0024 Score=41.95 Aligned_cols=156 Identities=22% Similarity=0.234 Sum_probs=101.9
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHCCEEEEEEEEEEEECCCCCEEE-EEEEECCCCCHH-
Q ss_conf 999801389877889999998298054444311305867798719505232799997437884389-999617873002-
Q gi|254780321|r 14 FSIVAHIDHGKSTLADRFIQHCRGLTEREMSSQVLDNMDIERERGITIKAQTVRLNYTSTDAKDYQ-LNLIDTPGHVDF- 91 (606)
Q Consensus 14 ~~IiaHvDhGKTTL~d~lL~~tg~i~~~~~~~~vlD~~~~EreRGITIka~~~~~~~~~~~~~~y~-iNlIDTPGH~DF- 91 (606)
++++|....||+||..+++...-.+....... ...+-.|+.. . ..+. +-++||||...-
T Consensus 3 ~~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~------------~-~~~~~~~~~d~pg~~~~~ 63 (278)
T TIGR00436 3 VAILGRPNVGKSTLLNKLLGQKISITSPKPQT------TRNRISGILT------------T-GASQNIIFIDTPGFHEPE 63 (278)
T ss_pred EEECCCCCCCHHHHHHHHHCCCHHCCCCCCHH------HHHHHHEEEE------------C-CCCCCEEEEECCCCCCHH
T ss_conf 12115776533667776632410100231012------3433200122------------3-665515786258765124
Q ss_pred HH--------HHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCHHHH---HHHHHHH
Q ss_conf 79--------999999730268999986878865589999999970996799832678875321133888---7755532
Q gi|254780321|r 92 TY--------EVSRSLSACEGSLLVVDATQGVEAQTLANVYQAIDNNHEIITVLNKADLPSADPDRVKKQ---IEETIGI 160 (606)
Q Consensus 92 ~~--------EV~r~l~a~dgaiLvVdA~~Gvq~QT~~~~~~A~~~~l~~I~viNKiD~~~A~~e~v~~e---i~~~~g~ 160 (606)
.. +...++..+|-.++++++.++....-............+..+.+||+|... .++..... .....++
T Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 142 (278)
T TIGR00436 64 KHKLGELLNKEARSALGGVDLLLFVVDSDEWNGDGDEFLLEKLQNLKRPVLLTLNKLDNKN-FPDKLLPLLDKYAGLEDF 142 (278)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHCC
T ss_conf 5677888888887531232268898633445564046889876520210100122333101-035677777666554204
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHC
Q ss_conf 23210001110022320067877632100
Q gi|254780321|r 161 STEDALLVSAKTGEGIPLLLERIVQQLPS 189 (606)
Q Consensus 161 ~~~~ii~vSAktG~GV~~LLd~Iv~~iP~ 189 (606)
.+.+++++|+.+|.++..+...+-.++|.
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (278)
T TIGR00436 143 KPWPIVPISALKGDNTEELKAFLEAKLPE 171 (278)
T ss_pred CCCCEEEHHHHHHCHHHHHHHHHHHHCCC
T ss_conf 67520110112100057788887753033
No 328
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=97.20 E-value=0.00052 Score=46.42 Aligned_cols=97 Identities=28% Similarity=0.328 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHHCCE-EEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCC--CCCHHH----HHHHHHHHHH
Q ss_conf 027999999973026-899998687886558999999997099679983267887532--113388----8775553223
Q gi|254780321|r 90 DFTYEVSRSLSACEG-SLLVVDATQGVEAQTLANVYQAIDNNHEIITVLNKADLPSAD--PDRVKK----QIEETIGIST 162 (606)
Q Consensus 90 DF~~EV~r~l~a~dg-aiLvVdA~~Gvq~QT~~~~~~A~~~~l~~I~viNKiD~~~A~--~e~v~~----ei~~~~g~~~ 162 (606)
||..+..+.+.--++ +++|||+.+=...=-...+ ....+-++++|+||+|+-..+ ..++.. ......++..
T Consensus 22 ~~~~~~l~~~~~~~~lVv~VvDi~Df~~S~~~~l~--~~~~~~~v~lV~NK~DLLp~~~~~~~~~~~~~~~~~~~~~~~~ 99 (190)
T cd01855 22 DFILNLLSSISPKKALVVHVVDIFDFPGSLIPRLR--LFGGNNPVILVGNKIDLLPKDKNLVRIKNWLRAKAAAGLGLKP 99 (190)
T ss_pred HHHHHHHHHCCCCCCEEEEEEECCCCCCCCCHHHH--HHCCCCCEEEEEEHHHHCCCCCCHHHHHHHHHHHHHHHCCCCC
T ss_conf 36899998524678459999754357644465579--8617986899998155178876588889899999750159984
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHH
Q ss_conf 21000111002232006787763210
Q gi|254780321|r 163 EDALLVSAKTGEGIPLLLERIVQQLP 188 (606)
Q Consensus 163 ~~ii~vSAktG~GV~~LLd~Iv~~iP 188 (606)
.++..+||++|.|++.|++.|-++..
T Consensus 100 ~~v~lvSa~~~~gi~~L~~~i~~~~~ 125 (190)
T cd01855 100 KDVILISAKKGWGVEELINAIKKLAK 125 (190)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 31799766578698999999999746
No 329
>TIGR02729 Obg_CgtA GTP-binding protein Obg/CgtA; InterPro: IPR014100 This entry describes a universal, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure..
Probab=97.16 E-value=0.0096 Score=37.90 Aligned_cols=112 Identities=26% Similarity=0.361 Sum_probs=64.7
Q ss_pred HHHCEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCC--HHHHHHCCEEEEEEEEEEEECCCCCE--EEEEEE
Q ss_conf 52531799980138987788999999829805444431130586--77987195052327999974378843--899996
Q gi|254780321|r 8 LSRIRNFSIVAHIDHGKSTLADRFIQHCRGLTEREMSSQVLDNM--DIERERGITIKAQTVRLNYTSTDAKD--YQLNLI 83 (606)
Q Consensus 8 ~~~IRN~~IiaHvDhGKTTL~d~lL~~tg~i~~~~~~~~vlD~~--~~EreRGITIka~~~~~~~~~~~~~~--y~iNlI 83 (606)
++=|=.+++||=--+|||||..++ |.+=.+ +=||. -++-.=| .|. .++.. ..+-+-
T Consensus 155 LKllADVGLvGfPNAGKSTLLs~~---S~AkPK------iAdYPFTTL~P~LG------vv~-----~~~~~Y~~~fviA 214 (296)
T TIGR02729 155 LKLLADVGLVGFPNAGKSTLLSAI---SNAKPK------IADYPFTTLEPNLG------VVR-----VDDNKYERSFVIA 214 (296)
T ss_pred EEEEEEEEEECCCCCCHHHHHHHH---HCCCCE------ECCCCCCCCCCCEE------EEE-----ECCCCEEEEEEEE
T ss_conf 666620210357887468888887---627882------23878745653112------898-----7487416889998
Q ss_pred ECCCCC-----------HHHHHHHHHHHHCCEEEEEEECCCC-----CCHHHHHHHHHHH----------HCCCCEEEEE
Q ss_conf 178730-----------0279999999730268999986878-----8655899999999----------7099679983
Q gi|254780321|r 84 DTPGHV-----------DFTYEVSRSLSACEGSLLVVDATQG-----VEAQTLANVYQAI----------DNNHEIITVL 137 (606)
Q Consensus 84 DTPGH~-----------DF~~EV~r~l~a~dgaiLvVdA~~G-----vq~QT~~~~~~A~----------~~~l~~I~vi 137 (606)
|-||=. +|-==+|| |---|.|||++.- -..--.+.+ .++ ...-|.|+|+
T Consensus 215 DIPGLIEGAs~G~GLG~~FLKHIER----t~~L~hviD~~~~qlSkh~~~~p~~~y-~~l~~EL~~Y~~~L~~k~~~iv~ 289 (296)
T TIGR02729 215 DIPGLIEGASEGKGLGHKFLKHIER----TRLLLHVIDASGIQLSKHDGRDPIEDY-ETLRNELELYSPELADKPQIIVL 289 (296)
T ss_pred ECCCCHHHHHCCCCCCHHHHHHHHH----EEEEEEEEECCCCEEEECCCCCHHHHH-HHHHHHHHHCCHHHCCCCEEEEE
T ss_conf 5686156662688753355457520----266887980687534242898889999-99999997508736278079998
Q ss_pred CCCCCCC
Q ss_conf 2678875
Q gi|254780321|r 138 NKADLPS 144 (606)
Q Consensus 138 NKiD~~~ 144 (606)
||||++.
T Consensus 290 NK~Dl~~ 296 (296)
T TIGR02729 290 NKIDLLD 296 (296)
T ss_pred EECCCCC
T ss_conf 6067789
No 330
>KOG1547 consensus
Probab=97.15 E-value=0.0008 Score=45.14 Aligned_cols=120 Identities=23% Similarity=0.278 Sum_probs=63.4
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHH-CCEEEEEEEEEEEECCCCCEEEEEEEECCCCCHH
Q ss_conf 799980138987788999999829805444431130586779871-9505232799997437884389999617873002
Q gi|254780321|r 13 NFSIVAHIDHGKSTLADRFIQHCRGLTEREMSSQVLDNMDIERER-GITIKAQTVRLNYTSTDAKDYQLNLIDTPGHVDF 91 (606)
Q Consensus 13 N~~IiaHvDhGKTTL~d~lL~~tg~i~~~~~~~~vlD~~~~EreR-GITIka~~~~~~~~~~~~~~y~iNlIDTPGH~DF 91 (606)
||-++|..+-|||||...|. .+...+. . ..|.. .|+-+ -+-||+.+-.+. .++-..++|+|||||+-||
T Consensus 48 NIMVVgqSglgkstlinTlf-~s~v~~~-s----~~~~~-~~p~pkT~eik~~thvie---E~gVklkltviDTPGfGDq 117 (336)
T KOG1547 48 NIMVVGQSGLGKSTLINTLF-KSHVSDS-S----SSDNS-AEPIPKTTEIKSITHVIE---EKGVKLKLTVIDTPGFGDQ 117 (336)
T ss_pred EEEEEECCCCCCHHHHHHHH-HHHHHHC-C----CCCCC-CCCCCCEEEEEEEEEEEE---ECCEEEEEEEECCCCCCCC
T ss_conf 79998068777115678888-8887612-5----89765-675564278875344533---0665899888348985333
Q ss_pred HH-------------HH-H----HHH------HH----CCEEEEEEECCCC-CCHHHHHHHHHHHHCCCCEEEEECCCCC
Q ss_conf 79-------------99-9----999------73----0268999986878-8655899999999709967998326788
Q gi|254780321|r 92 TY-------------EV-S----RSL------SA----CEGSLLVVDATQG-VEAQTLANVYQAIDNNHEIITVLNKADL 142 (606)
Q Consensus 92 ~~-------------EV-~----r~l------~a----~dgaiLvVdA~~G-vq~QT~~~~~~A~~~~l~~I~viNKiD~ 142 (606)
.. |- + +-+ +. +-.+|.-|.++.- ..|--++.+ +-+..-.-+||||-|-|-
T Consensus 118 InN~ncWePI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptGhsLrplDiefl-krLt~vvNvvPVIakaDt 196 (336)
T KOG1547 118 INNDNCWEPIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTGHSLRPLDIEFL-KRLTEVVNVVPVIAKADT 196 (336)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCCCCCCCCCCHHHH-HHHHHHHEEEEEEEECCC
T ss_conf 3753206779999999999999999867765138875478999996798875670449999-988655204335750664
Q ss_pred C
Q ss_conf 7
Q gi|254780321|r 143 P 143 (606)
Q Consensus 143 ~ 143 (606)
-
T Consensus 197 l 197 (336)
T KOG1547 197 L 197 (336)
T ss_pred C
T ss_conf 4
No 331
>KOG1707 consensus
Probab=97.14 E-value=0.016 Score=36.45 Aligned_cols=148 Identities=16% Similarity=0.171 Sum_probs=85.2
Q ss_pred HHCEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHCCEEEEEEEEEEEECCCCCEEEEEEEECCCC
Q ss_conf 25317999801389877889999998298054444311305867798719505232799997437884389999617873
Q gi|254780321|r 9 SRIRNFSIVAHIDHGKSTLADRFIQHCRGLTEREMSSQVLDNMDIERERGITIKAQTVRLNYTSTDAKDYQLNLIDTPGH 88 (606)
Q Consensus 9 ~~IRN~~IiaHvDhGKTTL~d~lL~~tg~i~~~~~~~~vlD~~~~EreRGITIka~~~~~~~~~~~~~~y~iNlIDTPGH 88 (606)
+.+| |.++|--+.|||+|.=+|+...-. +..-.++| -|||-+..+. + .--..++||+--
T Consensus 8 kdVR-IvliGD~G~GKtSLImSL~~eef~----~~VP~rl~--------~i~IPadvtP------e--~vpt~ivD~ss~ 66 (625)
T KOG1707 8 KDVR-IVLIGDEGVGKTSLIMSLLEEEFV----DAVPRRLP--------RILIPADVTP------E--NVPTSIVDTSSD 66 (625)
T ss_pred CCEE-EEEECCCCCCHHHHHHHHHHHHCC----CCCCCCCC--------CCCCCCCCCC------C--CCCEEEEECCCC
T ss_conf 5259-999778886689999998763354----53455577--------6115875676------7--672188743666
Q ss_pred CHHHHHHHHHHHHCCEEEEEEECCC-----CCCHHHHHHHHHH----HH---CCCCEEEEECCCCCCCCCCCCHHHHHHH
Q ss_conf 0027999999973026899998687-----8865589999999----97---0996799832678875321133888775
Q gi|254780321|r 89 VDFTYEVSRSLSACEGSLLVVDATQ-----GVEAQTLANVYQA----ID---NNHEIITVLNKADLPSADPDRVKKQIEE 156 (606)
Q Consensus 89 ~DF~~EV~r~l~a~dgaiLvVdA~~-----Gvq~QT~~~~~~A----~~---~~l~~I~viNKiD~~~A~~e~v~~ei~~ 156 (606)
.|=-..+...++-++-..+|-+.++ |++ | .|+- +. ...|+|+|=||.|.-..........+.-
T Consensus 67 ~~~~~~l~~EirkA~vi~lvyavd~~~T~D~is--t---~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~~s~e~~~~p 141 (625)
T KOG1707 67 SDDRLCLRKEIRKADVICLVYAVDDESTVDRIS--T---KWLPLIRQLFGDYHETPVILVGNKSDNGDNENNSDEVNTLP 141 (625)
T ss_pred CCHHHHHHHHHHHCCEEEEEEECCCHHHHHHHH--H---HHHHHHHCCCCCCCCCCEEEEEECCCCCCCCCCCHHHHHHH
T ss_conf 425688999986458899998538768765444--3---22365644157776687799830357755455641577789
Q ss_pred HHH--HHHHHHHHHHHHCCCCCCHHHHH
Q ss_conf 553--22321000111002232006787
Q gi|254780321|r 157 TIG--ISTEDALLVSAKTGEGIPLLLER 182 (606)
Q Consensus 157 ~~g--~~~~~ii~vSAktG~GV~~LLd~ 182 (606)
++. -+.+..+-|||++-.++.+++-.
T Consensus 142 im~~f~EiEtciecSA~~~~n~~e~fYy 169 (625)
T KOG1707 142 IMIAFAEIETCIECSALTLANVSELFYY 169 (625)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9987577778876546544113776545
No 332
>KOG2486 consensus
Probab=97.12 E-value=0.0062 Score=39.17 Aligned_cols=157 Identities=22% Similarity=0.285 Sum_probs=91.8
Q ss_pred CCHHHCEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHCCEEEEEEEEEEEECCCCCEEEEEEEEC
Q ss_conf 98525317999801389877889999998298054444311305867798719505232799997437884389999617
Q gi|254780321|r 6 TPLSRIRNFSIVAHIDHGKSTLADRFIQHCRGLTEREMSSQVLDNMDIERERGITIKAQTVRLNYTSTDAKDYQLNLIDT 85 (606)
Q Consensus 6 ~p~~~IRN~~IiaHvDhGKTTL~d~lL~~tg~i~~~~~~~~vlD~~~~EreRGITIka~~~~~~~~~~~~~~y~iNlIDT 85 (606)
.|-.+---+++.+-..-|||+|.+.++.. ..+...+.. .-|-| |+...... ++. +-++|-
T Consensus 131 ~Pk~~~pe~~~~g~SNVGKSSLln~~~r~-k~~~~t~k~-----------K~g~T---q~in~f~v---~~~--~~~vDl 190 (320)
T KOG2486 131 CPKDKRPELAFYGRSNVGKSSLLNDLVRV-KNIADTSKS-----------KNGKT---QAINHFHV---GKS--WYEVDL 190 (320)
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHH-HHHHHHCCC-----------CCCCC---EEEEEEEC---CCE--EEEEEC
T ss_conf 77788852666247762278887654321-455640378-----------87651---13200120---554--899846
Q ss_pred CCC----------CHHH-----HHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCC---
Q ss_conf 873----------0027-----9999999730268999986878865589999999970996799832678875321---
Q gi|254780321|r 86 PGH----------VDFT-----YEVSRSLSACEGSLLVVDATQGVEAQTLANVYQAIDNNHEIITVLNKADLPSADP--- 147 (606)
Q Consensus 86 PGH----------~DF~-----~EV~r~l~a~dgaiLvVdA~~Gvq~QT~~~~~~A~~~~l~~I~viNKiD~~~A~~--- 147 (606)
||+ .||. |=.+|.= .=-+.|+|||..++|+--......+-+.++|.-.|.||||+...-.
T Consensus 191 PG~~~a~y~~~~~~d~~~~t~~Y~leR~n--Lv~~FLLvd~sv~i~~~D~~~i~~~ge~~VP~t~vfTK~DK~k~~~~~~ 268 (320)
T KOG2486 191 PGYGRAGYGFELPADWDKFTKSYLLEREN--LVRVFLLVDASVPIQPTDNPEIAWLGENNVPMTSVFTKCDKQKKVKRTG 268 (320)
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHH--HHEEEEEEECCCCCCCCCHHHHHHHHHCCCCEEEEEEHHHHHHHCCCCC
T ss_conf 88654567855741476757888872653--3115666303678899876999887524997388630244555302235
Q ss_pred CCHHHHHHH-HHHHHHH---H---HHHHHHHCCCCCCHHHHHHH
Q ss_conf 133888775-5532232---1---00011100223200678776
Q gi|254780321|r 148 DRVKKQIEE-TIGISTE---D---ALLVSAKTGEGIPLLLERIV 184 (606)
Q Consensus 148 e~v~~ei~~-~~g~~~~---~---ii~vSAktG~GV~~LLd~Iv 184 (606)
.+...+|.. +.++... . -+++|+.|+.|++.|+=.|-
T Consensus 269 kKp~~~i~~~f~~l~~~~f~~~~Pw~~~Ssvt~~Grd~Ll~~i~ 312 (320)
T KOG2486 269 KKPGLNIKINFQGLIRGVFLVDLPWIYVSSVTSLGRDLLLLHIA 312 (320)
T ss_pred CCCCCCCEEEHHHCCCCCEECCCCCEEEECCCCCCCEEEEEEHH
T ss_conf 57540012102001500041158701320434257200110166
No 333
>KOG0083 consensus
Probab=97.04 E-value=0.0012 Score=44.09 Aligned_cols=177 Identities=20% Similarity=0.244 Sum_probs=94.8
Q ss_pred EECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHCCEEEEEEEEEEEEC----CCCCEEEEEEEECCCCCHH
Q ss_conf 980138987788999999829805444431130586779871950523279999743----7884389999617873002
Q gi|254780321|r 16 IVAHIDHGKSTLADRFIQHCRGLTEREMSSQVLDNMDIERERGITIKAQTVRLNYTS----TDAKDYQLNLIDTPGHVDF 91 (606)
Q Consensus 16 IiaHvDhGKTTL~d~lL~~tg~i~~~~~~~~vlD~~~~EreRGITIka~~~~~~~~~----~~~~~y~iNlIDTPGH~DF 91 (606)
++|....|||-|.=|. .-|++-.... | +++.+.|+. .+++..++.+.||.|...|
T Consensus 2 llgds~~gktcllir~--kdgafl~~~f-----------------i--stvgid~rnkli~~~~~kvklqiwdtagqerf 60 (192)
T KOG0083 2 LLGDSCTGKTCLLIRF--KDGAFLAGNF-----------------I--STVGIDFRNKLIDMDDKKVKLQIWDTAGQERF 60 (192)
T ss_pred CCCCCCCCCEEEEEEE--CCCCEECCCE-----------------E--EEEEECCCCCEECCCCCEEEEEEEECCCHHHH
T ss_conf 3456766856899995--1674003761-----------------1--33200121304513883899998523145777
Q ss_pred HHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHH-HHHH---CCCCEEEEECCCCCCCCCC--CCHHHHHHHHHHHHHHHH
Q ss_conf 799999997302689999868788655899999-9997---0996799832678875321--133888775553223210
Q gi|254780321|r 92 TYEVSRSLSACEGSLLVVDATQGVEAQTLANVY-QAID---NNHEIITVLNKADLPSADP--DRVKKQIEETIGISTEDA 165 (606)
Q Consensus 92 ~~EV~r~l~a~dgaiLvVdA~~Gvq~QT~~~~~-~A~~---~~l~~I~viNKiD~~~A~~--e~v~~ei~~~~g~~~~~i 165 (606)
..-...-.+-+|.-|||-|-+.----....+|. ...+ ..+....+=||+|+...+. ..--+.+.+..+++ .
T Consensus 61 rsvt~ayyrda~allllydiankasfdn~~~wlsei~ey~k~~v~l~llgnk~d~a~er~v~~ddg~kla~~y~ip---f 137 (192)
T KOG0083 61 RSVTHAYYRDADALLLLYDIANKASFDNCQAWLSEIHEYAKEAVALMLLGNKCDLAHERAVKRDDGEKLAEAYGIP---F 137 (192)
T ss_pred HHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCCCCCHHHHHHHHHCCC---C
T ss_conf 5544766316562554332113010778999999999998866767544253554123045653178899987997---1
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHCCCCHHHHHCCCCCCCCCEEECCCCCEEEE
Q ss_conf 00111002232006787763210001111220123310121011475725999
Q gi|254780321|r 166 LLVSAKTGEGIPLLLERIVQQLPSPTSPEGANAPLKALLIDSWYNSYLGVMVL 218 (606)
Q Consensus 166 i~vSAktG~GV~~LLd~Iv~~iP~P~~~~~~~~Pl~alVfds~~D~~~G~I~~ 218 (606)
...|||||.+|+.-+-+|.+.+---+-...++..|+ -.+++.|..+|.|+-
T Consensus 138 metsaktg~nvd~af~~ia~~l~k~~~~~~~~~~~~--~~~~v~~~~k~eia~ 188 (192)
T KOG0083 138 METSAKTGFNVDLAFLAIAEELKKLKMGAPPEGEFA--DHDSVADEGKGEIAR 188 (192)
T ss_pred EECCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCC--CCHHHHHCCCCCCCC
T ss_conf 640330264376899999999997314899997312--106677528984100
No 334
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=96.96 E-value=0.024 Score=35.18 Aligned_cols=63 Identities=19% Similarity=0.309 Sum_probs=27.0
Q ss_pred EEEEEECCCCCHHHHH----HHHHHHHEEECCCCC-CCE-----EEEEEEECHHHHHHHHHHHHHHHCCCEEE
Q ss_conf 9999808310003899----988630014244336-836-----99999960433322046876763574188
Q gi|254780321|r 414 QVTIITPNEYLGSILK----LCQERRGIQIDMSHL-DNR-----AMIVYELPLNEVIFDFYDRLKSVSKGYAS 476 (606)
Q Consensus 414 ~~~I~~P~ey~G~Vm~----~l~~RRG~~~~m~~~-~~~-----~~i~~~vPl~Eli~~f~~~LkS~T~G~as 476 (606)
++.+.+=..-+|.|.+ |...-.+.+.+.+-. +.. -..--++=+-.+||+.-|.++.+-.|--.
T Consensus 666 ~v~~~ii~~~vG~itesDv~lA~as~a~iigFnv~~~~~~~~~a~~~~v~i~~y~iIY~~id~v~~~~~g~l~ 738 (839)
T PRK05306 666 EVKVRIIHSGVGAITESDVTLAAASNAIIIGFNVRADAKARKLAEQEGVDIRYYSIIYDLIDDVKAAMSGMLE 738 (839)
T ss_pred CEEEEEEECCCCCCCHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHCCCEEEEECHHHHHHHHHHHHHHCCCC
T ss_conf 3789999516777768789889854988999538889899999998398189925688799999999844899
No 335
>PRK11537 putative GTP-binding protein YjiA; Provisional
Probab=96.90 E-value=0.01 Score=37.74 Aligned_cols=136 Identities=20% Similarity=0.267 Sum_probs=67.6
Q ss_pred EEECCCCCCHHHHHHHHHHHCCC----CCCCCCCCEEECCCHHHHHHCCEE--EEE---EEEEEE----------ECCC-
Q ss_conf 99801389877889999998298----054444311305867798719505--232---799997----------4378-
Q gi|254780321|r 15 SIVAHIDHGKSTLADRFIQHCRG----LTEREMSSQVLDNMDIERERGITI--KAQ---TVRLNY----------TSTD- 74 (606)
Q Consensus 15 ~IiaHvDhGKTTL~d~lL~~tg~----i~~~~~~~~vlD~~~~EreRGITI--ka~---~~~~~~----------~~~~- 74 (606)
-|-|--++|||||.-++|...+. +-.+|.++-=.|..-+.. .+-.+ .++ +|++.= ...+
T Consensus 8 iltGFLGaGKTTlL~~lL~~~~~~riaVivNEfGev~iD~~li~~-~~~~v~eL~nGCiCCs~~~dl~~~l~~l~~~~~~ 86 (317)
T PRK11537 8 LLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIGD-RATQIKTLTNGCICCSRSNELEDALLDLLDNLDR 86 (317)
T ss_pred EEEECCCCCHHHHHHHHHHCCCCCCEEEEEECCCCCCCHHHHHHC-CCCCEEEECCCCEEEEECCHHHHHHHHHHHHHHC
T ss_conf 983088889999999997277899789998376145332988735-6532688447736873052289999999986643
Q ss_pred C---CEEEEEEEECCCCCHHHH--------HHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHC-CCCEEEEECCCCC
Q ss_conf 8---438999961787300279--------999999730268999986878865589999999970-9967998326788
Q gi|254780321|r 75 A---KDYQLNLIDTPGHVDFTY--------EVSRSLSACEGSLLVVDATQGVEAQTLANVYQAIDN-NHEIITVLNKADL 142 (606)
Q Consensus 75 ~---~~y~iNlIDTPGH~DF~~--------EV~r~l~a~dgaiLvVdA~~Gvq~QT~~~~~~A~~~-~l~~I~viNKiD~ 142 (606)
+ -||. +|-|-|=+|=+. +.-..--..|+++-||||..+.+ +...+..+.+| ..-=++++||.|+
T Consensus 87 ~~~~~D~I--iIEtsGlAdP~~I~~~~~~~~~l~~~~~Ld~vVtvVDa~~~~~--~l~~~~~~~~Qi~~AD~illnK~Dl 162 (317)
T PRK11537 87 GNIQFDRL--VIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADE--QMNQFTIAQSQVGYADRILLTKTDV 162 (317)
T ss_pred CCCCCCEE--EEECCCCCCHHHHHHHHHHHHHHHHHEECCCEEEEEEHHHHHH--HHHCCHHHHHHHHHCCEEEEECCCC
T ss_conf 57775479--9962577883999999861256565320365599986655576--6530346676663186899742002
Q ss_pred CCCCCCCHHHHHHH
Q ss_conf 75321133888775
Q gi|254780321|r 143 PSADPDRVKKQIEE 156 (606)
Q Consensus 143 ~~A~~e~v~~ei~~ 156 (606)
.+.. +++.+.+..
T Consensus 163 v~~~-~~l~~~l~~ 175 (317)
T PRK11537 163 AGEA-EKLRERLAR 175 (317)
T ss_pred CCHH-HHHHHHHHH
T ss_conf 3659-999999998
No 336
>pfam04548 AIG1 AIG1 family. Arabidopsis protein AIG1 appears to be involved in plant resistance to bacteria.
Probab=96.86 E-value=0.04 Score=33.74 Aligned_cols=150 Identities=21% Similarity=0.306 Sum_probs=72.5
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHCCEEEEEEEEEEEECCCCCEEEEEEEECCCCCHH-
Q ss_conf 7999801389877889999998298054444311305867798719505232799997437884389999617873002-
Q gi|254780321|r 13 NFSIVAHIDHGKSTLADRFIQHCRGLTEREMSSQVLDNMDIERERGITIKAQTVRLNYTSTDAKDYQLNLIDTPGHVDF- 91 (606)
Q Consensus 13 N~~IiaHvDhGKTTL~d~lL~~tg~i~~~~~~~~vlD~~~~EreRGITIka~~~~~~~~~~~~~~y~iNlIDTPGH~DF- 91 (606)
++.++|-.++|||+....+|-.. .+...... ...|- .+.... ..|....+++|||||-.|.
T Consensus 2 rivLlGktG~GKSstgNtILG~~-~F~s~~~~------------~~vT~---~c~~~~--~~~~gr~v~ViDTPgl~~~~ 63 (200)
T pfam04548 2 RIVLVGKTGNGKSATGNSILGRK-AFESKLRA------------QGVTK---TCQLVS--RTWDGRIINVIDTPGLFDLS 63 (200)
T ss_pred EEEEECCCCCCHHHHHHHHCCCC-CCCCCCCC------------CCCCE---EEEEEE--EEECCEEEEEEECCCCCCCC
T ss_conf 89997999984365576617975-33578988------------88741---368999--99899689999786635767
Q ss_pred ------HHHHHHHHHHC----CEEEEEEECCCCCC---HHHHHHHHHHHHCCC--CEEEEECCCC-CCCCCCCCHHH---
Q ss_conf ------79999999730----26899998687886---558999999997099--6799832678-87532113388---
Q gi|254780321|r 92 ------TYEVSRSLSAC----EGSLLVVDATQGVE---AQTLANVYQAIDNNH--EIITVLNKAD-LPSADPDRVKK--- 152 (606)
Q Consensus 92 ------~~EV~r~l~a~----dgaiLvVdA~~Gvq---~QT~~~~~~A~~~~l--~~I~viNKiD-~~~A~~e~v~~--- 152 (606)
.-|+.|++..| +..|||++... .- .++.......+-.++ ..|++...-| +++-..++...
T Consensus 64 ~~~~~~~~ei~~~~~l~~pGpHa~LLVi~~~r-fT~ee~~~v~~i~~~FGe~~~~~tIVLFT~~D~L~~~si~~~i~~~~ 142 (200)
T pfam04548 64 VSNDFISKEIIRCLLLAEPGPHAVLLVLSLGR-FTEEEEQALRTLQELFGSKILDYMIVVFTRKDDLEDDSLDDYLSDGC 142 (200)
T ss_pred CCHHHHHHHHHHHHHHCCCCCCEEEEEEECCC-CCHHHHHHHHHHHHHHHHHHHHHEEEEEECHHHCCCCCHHHHHHHCC
T ss_conf 78699999999999855899857999986688-88899999999999975786800999997802149997999987227
Q ss_pred --HHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q ss_conf --87755532232100011100223200678776321
Q gi|254780321|r 153 --QIEETIGISTEDALLVSAKTGEGIPLLLERIVQQL 187 (606)
Q Consensus 153 --ei~~~~g~~~~~ii~vSAktG~GV~~LLd~Iv~~i 187 (606)
.+.+++.- .-......-|.+||+.|-+.+
T Consensus 143 ~~~Lq~li~~------~~~~~~~~QV~eLL~kIe~mv 173 (200)
T pfam04548 143 PEFLKEVLRT------ADGEEKEEQVQQLLALVEAIV 173 (200)
T ss_pred HHHHHHHHHH------CCCCCCHHHHHHHHHHHHHHH
T ss_conf 3999999987------788545799999999999999
No 337
>PRK01889 ribosome-associated GTPase; Reviewed
Probab=96.81 E-value=0.0018 Score=42.78 Aligned_cols=11 Identities=27% Similarity=0.522 Sum_probs=3.7
Q ss_pred CCCCCHHHHHH
Q ss_conf 22320067877
Q gi|254780321|r 173 GEGIPLLLERI 183 (606)
Q Consensus 173 G~GV~~LLd~I 183 (606)
|.|=..|++++
T Consensus 204 GVGKSTLiN~L 214 (353)
T PRK01889 204 GVGKSTLVNAL 214 (353)
T ss_pred CCCHHHHHHHH
T ss_conf 86699999875
No 338
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=96.80 E-value=0.0056 Score=39.50 Aligned_cols=52 Identities=23% Similarity=0.265 Sum_probs=38.2
Q ss_pred HHHHHHHHHCCEEEEEEECCCCCCHHHH--HHHHHHHHCCCCEEEEECCCCCCC
Q ss_conf 9999999730268999986878865589--999999970996799832678875
Q gi|254780321|r 93 YEVSRSLSACEGSLLVVDATQGVEAQTL--ANVYQAIDNNHEIITVLNKADLPS 144 (606)
Q Consensus 93 ~EV~r~l~a~dgaiLvVdA~~Gvq~QT~--~~~~~A~~~~l~~I~viNKiD~~~ 144 (606)
.++.+.+..+|-+|.|+||..+.-..-. +.+......+-|+|+|+||+|+..
T Consensus 3 rq~~~~ie~aDvVleV~DaR~p~~s~~~~l~~~l~~~~~~Kp~ilVlNK~DL~~ 56 (141)
T cd01857 3 RQLWRVVERSDIVVQIVDARNPLLFRPPDLERYVKEVDPRKKNILLLNKADLLT 56 (141)
T ss_pred HHHHHHHHHCCEEEEEEECCCCCCCCCHHHHHHHHHHCCCCCEEEEEECCCCCC
T ss_conf 899999976999999998988887689999999998438995799986500499
No 339
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=96.78 E-value=0.033 Score=34.34 Aligned_cols=130 Identities=23% Similarity=0.279 Sum_probs=70.8
Q ss_pred EEEEEECCCCCCHHHHHHHHHH------HCCCCCCCC--------C----------CCEEECCCHHH------HHH--C-
Q ss_conf 1799980138987788999999------829805444--------4----------31130586779------871--9-
Q gi|254780321|r 12 RNFSIVAHIDHGKSTLADRFIQ------HCRGLTERE--------M----------SSQVLDNMDIE------RER--G- 58 (606)
Q Consensus 12 RN~~IiaHvDhGKTTL~d~lL~------~tg~i~~~~--------~----------~~~vlD~~~~E------reR--G- 58 (606)
=-++++|+--+|||++.|+|.. .+|..++.. . ...+.|..+++ .++ |
T Consensus 27 PqiVVvGdQSsGKSSvLEaitGi~FlPr~~g~cTR~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~g~ 106 (240)
T smart00053 27 PQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLILQLINSSTEYAEFLHCKGKKFTDFDEVRNEIEAETDRVTGT 106 (240)
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCEECCEEEEEEECCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHCCC
T ss_conf 84899888787589999998788755568972764406999733886512477437863489899999999988753267
Q ss_pred -CEEEEEEEEEEEECCCCCEEEEEEEECCCCCH--------H-H----HHHHHHHHHCCE-EEEEEECCCCCCHHHHHHH
Q ss_conf -50523279999743788438999961787300--------2-7----999999973026-8999986878865589999
Q gi|254780321|r 59 -ITIKAQTVRLNYTSTDAKDYQLNLIDTPGHVD--------F-T----YEVSRSLSACEG-SLLVVDATQGVEAQTLANV 123 (606)
Q Consensus 59 -ITIka~~~~~~~~~~~~~~y~iNlIDTPGH~D--------F-~----~EV~r~l~a~dg-aiLvVdA~~Gvq~QT~~~~ 123 (606)
-.+......+...+.+- ..+.|||.||-.- - . .-|.+.++--.. .|.|++|..-+..|. .+
T Consensus 107 ~~~~s~~~l~lei~gP~~--p~LTlvDLPGl~~~~~~~q~~~~~~~v~~lv~~Yi~~p~tIILaVv~a~~D~anq~--~l 182 (240)
T smart00053 107 NKGISPVPINLRVYSPHV--LNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSD--AL 182 (240)
T ss_pred CCCCCCCCEEEEEECCCC--CCCEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCHHHHH--HH
T ss_conf 887678855999947999--88544147541246789985679999999999984798806999840785676619--99
Q ss_pred HHHHHC---CCCEEEEECCCCCCCC
Q ss_conf 999970---9967998326788753
Q gi|254780321|r 124 YQAIDN---NHEIITVLNKADLPSA 145 (606)
Q Consensus 124 ~~A~~~---~l~~I~viNKiD~~~A 145 (606)
.+|.+. |-..|-||+|.|+-..
T Consensus 183 ~lAr~~Dp~g~RTiGVlTKpDl~~~ 207 (240)
T smart00053 183 KLAKEVDPQGERTIGVITKLDLMDE 207 (240)
T ss_pred HHHHHHCCCCCEEEEEECCCCCCCC
T ss_conf 9999719999828999735334577
No 340
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=96.78 E-value=0.0025 Score=41.81 Aligned_cols=55 Identities=25% Similarity=0.436 Sum_probs=35.3
Q ss_pred CEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHCCEEEEEEEEEEEECCCCCEEEEEEEECCC
Q ss_conf 31799980138987788999999829805444431130586779871950523279999743788438999961787
Q gi|254780321|r 11 IRNFSIVAHIDHGKSTLADRFIQHCRGLTEREMSSQVLDNMDIERERGITIKAQTVRLNYTSTDAKDYQLNLIDTPG 87 (606)
Q Consensus 11 IRN~~IiaHvDhGKTTL~d~lL~~tg~i~~~~~~~~vlD~~~~EreRGITIka~~~~~~~~~~~~~~y~iNlIDTPG 87 (606)
--+++|+|+-..|||||.-+|+....... -..-|.|-.++.+.+ + + .+.||||||
T Consensus 100 ~~~i~ivG~PNVGKSsliN~L~~~~~~~v--------------~~~pGtTrd~~~i~~-----~-~--~~~liDTpG 154 (155)
T cd01849 100 SITVGVIGYPNVGKSSVINALLNKLKLKV--------------GNVPGTTTSQQEVKL-----D-N--KIKLLDTPG 154 (155)
T ss_pred CEEEEEECCCCCCHHHHHHHHHCCCEEEE--------------CCCCCCEECEEEEEE-----C-C--CEEEEECCC
T ss_conf 60899987777447789999847850626--------------699983835599996-----8-9--989997929
No 341
>PRK12312 infB translation initiation factor IF-2; Provisional
Probab=96.78 E-value=0.041 Score=33.66 Aligned_cols=73 Identities=16% Similarity=0.238 Sum_probs=33.5
Q ss_pred EEEEECCCCCHHHHH----HHHHHHHEEECCCCC-C-C-E---EEEEEEECHHHHHHHHHHHHHHHCCCEEEEEEEECCC
Q ss_conf 999808310003899----988630014244336-8-3-6---9999996043332204687676357418889854354
Q gi|254780321|r 415 VTIITPNEYLGSILK----LCQERRGIQIDMSHL-D-N-R---AMIVYELPLNEVIFDFYDRLKSVSKGYASFDYNVIDY 484 (606)
Q Consensus 415 ~~I~~P~ey~G~Vm~----~l~~RRG~~~~m~~~-~-~-~---~~i~~~vPl~Eli~~f~~~LkS~T~G~as~~ye~~~Y 484 (606)
+.+-+=..-+|+|.+ +...-.+.+.+.+.. + + + ...--++=...+||+..|.++..-.|.=.=.++..-.
T Consensus 439 V~i~Ii~agVG~ItesDV~LA~as~AiIigFNV~~~~~a~~~A~~~gV~Ir~y~IIY~LiDdvk~~m~g~L~p~~~E~~i 518 (610)
T PRK12312 439 VKINIIRAAVGTISESDILLAQTSNSIIIGFNVKPSAIIKKLAESQGIKIRSHNIIYKIIEEIEKILKGMLDPVYEEVVI 518 (610)
T ss_pred EEEEEEECCCCCCCHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHCCCCEEEECHHHHHHHHHHHHHHCCCCCCEEEEEE
T ss_conf 35778633457776889999986699189973768877999877448626984228889999999984589972479998
Q ss_pred EEC
Q ss_conf 643
Q gi|254780321|r 485 RDS 487 (606)
Q Consensus 485 ~~~ 487 (606)
..+
T Consensus 519 G~A 521 (610)
T PRK12312 519 GQA 521 (610)
T ss_pred EEE
T ss_conf 999
No 342
>KOG2655 consensus
Probab=96.78 E-value=0.0043 Score=40.25 Aligned_cols=135 Identities=21% Similarity=0.347 Sum_probs=77.7
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHCCEEEEEEEEEEEECCCCCEEEEEEEECCCCCHHH
Q ss_conf 79998013898778899999982980544443113058677987195052327999974378843899996178730027
Q gi|254780321|r 13 NFSIVAHIDHGKSTLADRFIQHCRGLTEREMSSQVLDNMDIERERGITIKAQTVRLNYTSTDAKDYQLNLIDTPGHVDFT 92 (606)
Q Consensus 13 N~~IiaHvDhGKTTL~d~lL~~tg~i~~~~~~~~vlD~~~~EreRGITIka~~~~~~~~~~~~~~y~iNlIDTPGH~DF~ 92 (606)
|+-++|-.+-||||+.-.|+.. .....+ ++ +....+..+..+|.+..+-+. .+|-...+|+|||||..|+.
T Consensus 23 tlmvvG~sGlGKsTfiNsLf~~-~l~~~~----~~-~~~~~~~~~t~~i~~~~~~ie---e~g~~l~LtvidtPGfGD~v 93 (366)
T KOG2655 23 TLMVVGESGLGKSTFINSLFLT-DLSGNR----EV-PGASERIKETVEIESTKVEIE---ENGVKLNLTVIDTPGFGDAV 93 (366)
T ss_pred EEEEECCCCCCHHHHHHHHHHH-HCCCCC----CC-CCCCCCCCCCCEEEEEEEEEC---CCCEEEEEEEECCCCCCCCC
T ss_conf 8998558876388999888865-325776----66-775567655311322323763---79748876784369986544
Q ss_pred HH------HH--------HHH---------HH----CCEEEEEEECC-CCCCHHHHHHHHHHHHCCCCEEEEECCCCCCC
Q ss_conf 99------99--------999---------73----02689999868-78865589999999970996799832678875
Q gi|254780321|r 93 YE------VS--------RSL---------SA----CEGSLLVVDAT-QGVEAQTLANVYQAIDNNHEIITVLNKADLPS 144 (606)
Q Consensus 93 ~E------V~--------r~l---------~a----~dgaiLvVdA~-~Gvq~QT~~~~~~A~~~~l~~I~viNKiD~~~ 144 (606)
-- +. ..| +. +..+|--|.-+ .|+.+.-++. .+.+...+.+||||-|-|.-.
T Consensus 94 dns~~w~pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~ghgL~p~Di~~-Mk~l~~~vNiIPVI~KaD~lT 172 (366)
T KOG2655 94 DNSNCWRPIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGHGLKPLDIEF-MKKLSKKVNLIPVIAKADTLT 172 (366)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEEECCCCCCCCHHHHHH-HHHHHCCCCCCCEEECCCCCC
T ss_conf 6512432356789999999986023688655668844899998378888886866999-997732566103164056689
Q ss_pred CCC-CCHHHHHHHH
Q ss_conf 321-1338887755
Q gi|254780321|r 145 ADP-DRVKKQIEET 157 (606)
Q Consensus 145 A~~-e~v~~ei~~~ 157 (606)
.+. ...+..|.+.
T Consensus 173 ~~El~~~K~~I~~~ 186 (366)
T KOG2655 173 KDELNQFKKRIRQD 186 (366)
T ss_pred HHHHHHHHHHHHHH
T ss_conf 89999999999999
No 343
>CHL00189 infB translation initiation factor 2; Provisional
Probab=96.73 E-value=0.034 Score=34.25 Aligned_cols=21 Identities=14% Similarity=0.210 Sum_probs=11.8
Q ss_pred HHHHCCCEEEEECCCCCEEEE
Q ss_conf 866449506973782330335
Q gi|254780321|r 364 LEREFSLNLIGTSPSVVYELY 384 (606)
Q Consensus 364 L~rEfg~ev~~t~P~V~Ykv~ 384 (606)
|..+.|-.+....|+.|-++.
T Consensus 494 M~Dd~Gk~vkeA~PS~PVeIl 514 (770)
T CHL00189 494 MINSAGNKINEAGPSSPVEIW 514 (770)
T ss_pred EECCCCCCCCCCCCCCCEEEE
T ss_conf 889999844554899868987
No 344
>KOG0091 consensus
Probab=96.60 E-value=0.034 Score=34.22 Aligned_cols=152 Identities=22% Similarity=0.232 Sum_probs=87.2
Q ss_pred EEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEE-ECCCH--HHHHHCCEEEEEEEEEEEECCCCCEEEEEEEECCCCCHH
Q ss_conf 998013898778899999982980544443113-05867--798719505232799997437884389999617873002
Q gi|254780321|r 15 SIVAHIDHGKSTLADRFIQHCRGLTEREMSSQV-LDNMD--IERERGITIKAQTVRLNYTSTDAKDYQLNLIDTPGHVDF 91 (606)
Q Consensus 15 ~IiaHvDhGKTTL~d~lL~~tg~i~~~~~~~~v-lD~~~--~EreRGITIka~~~~~~~~~~~~~~y~iNlIDTPGH~DF 91 (606)
-+||..--|||+|.-.+- -|.+.+-. .-+| .|... +|-+- |...++-|.||-|...|
T Consensus 12 ivigdstvgkssll~~ft--~gkfaels-dptvgvdffarlie~~p-----------------g~riklqlwdtagqerf 71 (213)
T KOG0091 12 IVIGDSTVGKSSLLRYFT--EGKFAELS-DPTVGVDFFARLIELRP-----------------GYRIKLQLWDTAGQERF 71 (213)
T ss_pred EEECCCCCCHHHHHHHHH--CCCCCCCC-CCCCCHHHHHHHHHCCC-----------------CCEEEEEEEECCCHHHH
T ss_conf 998377524888999983--37665567-98533678989873478-----------------86789987302056888
Q ss_pred HHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCC---CEEEE---ECCCCCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 7999999973026899998687886558999999997099---67998---32678875321133888775553223210
Q gi|254780321|r 92 TYEVSRSLSACEGSLLVVDATQGVEAQTLANVYQAIDNNH---EIITV---LNKADLPSADPDRVKKQIEETIGISTEDA 165 (606)
Q Consensus 92 ~~EV~r~l~a~dgaiLvVdA~~Gvq~QT~~~~~~A~~~~l---~~I~v---iNKiD~~~A~~e~v~~ei~~~~g~~~~~i 165 (606)
-.-...-.+-.=|++||-|-+.----.-+.+|.+--++.+ ..++| =.|.|+.+-+ .-..+|-+.+-.--.--.
T Consensus 72 rsitksyyrnsvgvllvyditnr~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~SqR-qVt~EEaEklAa~hgM~F 150 (213)
T KOG0091 72 RSITKSYYRNSVGVLLVYDITNRESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQSQR-QVTAEEAEKLAASHGMAF 150 (213)
T ss_pred HHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCHHHHC-CCCHHHHHHHHHHCCCEE
T ss_conf 8878998654641699996354466777899999999853899705999852431012211-113999999999659458
Q ss_pred HHHHHHCCCCCCHHHHHHHHHH
Q ss_conf 0011100223200678776321
Q gi|254780321|r 166 LLVSAKTGEGIPLLLERIVQQL 187 (606)
Q Consensus 166 i~vSAktG~GV~~LLd~Iv~~i 187 (606)
+-+||++|.||++-++.+.+.+
T Consensus 151 VETSak~g~NVeEAF~mlaqeI 172 (213)
T KOG0091 151 VETSAKNGCNVEEAFDMLAQEI 172 (213)
T ss_pred EEECCCCCCCHHHHHHHHHHHH
T ss_conf 9831457876899999999999
No 345
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=96.59 E-value=0.011 Score=37.64 Aligned_cols=69 Identities=26% Similarity=0.247 Sum_probs=47.8
Q ss_pred CCCEEEEEEEECCCCCHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCC
Q ss_conf 88438999961787300279999999730268999986878865589999999970996799832678875
Q gi|254780321|r 74 DAKDYQLNLIDTPGHVDFTYEVSRSLSACEGSLLVVDATQGVEAQTLANVYQAIDNNHEIITVLNKADLPS 144 (606)
Q Consensus 74 ~~~~y~iNlIDTPGH~DF~~EV~r~l~a~dgaiLvVdA~~Gvq~QT~~~~~~A~~~~l~~I~viNKiD~~~ 144 (606)
.|.+|-+=+||||-.. +..+..++.++|.+|+|+....--...+.....++.+.++++-+|+|+.|...
T Consensus 89 ~~~~~D~viiD~Ppg~--~~~~~~al~~ad~~iiVttP~~~si~d~~r~i~l~~~~~~~~gvV~Nr~~~~~ 157 (179)
T cd03110 89 KAEGAELIIIDGPPGI--GCPVIASLTGADAALLVTEPTPSGLHDLERAVELVRHFGIPVGVVINKYDLND 157 (179)
T ss_pred HCCCCCEEEEECCCCC--CHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCC
T ss_conf 4437998998189997--57899999739949998199478999999999999982997899996887887
No 346
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=96.57 E-value=0.0046 Score=40.05 Aligned_cols=93 Identities=14% Similarity=0.240 Sum_probs=39.7
Q ss_pred EEECCCCCHHH-HHHHHHHHHCCE----EEEEEECCCCCCHHHHH-HHHHHHHCCCCEEEEECCCCCCCCCCCCHHHHHH
Q ss_conf 96178730027-999999973026----89999868788655899-9999997099679983267887532113388877
Q gi|254780321|r 82 LIDTPGHVDFT-YEVSRSLSACEG----SLLVVDATQGVEAQTLA-NVYQAIDNNHEIITVLNKADLPSADPDRVKKQIE 155 (606)
Q Consensus 82 lIDTPGH~DF~-~EV~r~l~a~dg----aiLvVdA~~Gvq~QT~~-~~~~A~~~~l~~I~viNKiD~~~A~~e~v~~ei~ 155 (606)
++=++-+.+|. .=+.|.|.+|+. +++|+.=.+=...+... ........|.+++.+=++ -+.-.+++.
T Consensus 84 IV~s~~~p~~~~~~idR~Lv~a~~~~i~pvivlnK~DL~~~~~~~~~~~~~~~~gy~v~~~S~~-------~~~g~~~L~ 156 (287)
T cd01854 84 IVVSLNEPFFNPRLLDRYLVAAEAAGIEPVIVLTKADLLDDEEEELELVEALALGYPVLAVSAK-------TGEGLDELR 156 (287)
T ss_pred EEECCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECHHCCCCHHHHHHHHHHHCCCCEEEEEECC-------CCCCHHHHH
T ss_conf 9952689989989999999999977996899998622199489999999987299849999668-------985889999
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCHHHHHHH
Q ss_conf 55532232100011100223200678776
Q gi|254780321|r 156 ETIGISTEDALLVSAKTGEGIPLLLERIV 184 (606)
Q Consensus 156 ~~~g~~~~~ii~vSAktG~GV~~LLd~Iv 184 (606)
+.+. .......+-+|.|=..|++++.
T Consensus 157 ~~l~---~k~~v~~G~SGvGKSSLiN~L~ 182 (287)
T cd01854 157 EYLK---GKTSVLVGQSGVGKSTLINALL 182 (287)
T ss_pred HHHC---CCEEEEECCCCCCHHHHHHHHC
T ss_conf 8747---9889998899888899998746
No 347
>pfam03193 DUF258 Protein of unknown function, DUF258.
Probab=96.53 E-value=0.0022 Score=42.22 Aligned_cols=60 Identities=28% Similarity=0.350 Sum_probs=35.5
Q ss_pred EEEEEECCCCCCHHHHHHHHHH----HCCCCCCCCCCCEEECCCHHHHHHCC--EEEEEEEEEEEECCCCCEEEEEEEEC
Q ss_conf 1799980138987788999999----82980544443113058677987195--05232799997437884389999617
Q gi|254780321|r 12 RNFSIVAHIDHGKSTLADRFIQ----HCRGLTEREMSSQVLDNMDIERERGI--TIKAQTVRLNYTSTDAKDYQLNLIDT 85 (606)
Q Consensus 12 RN~~IiaHvDhGKTTL~d~lL~----~tg~i~~~~~~~~vlD~~~~EreRGI--TIka~~~~~~~~~~~~~~y~iNlIDT 85 (606)
+..+++||.+.|||||.-+|+- .||.|++. ..||- |- .+.+.. .+.. --+|||
T Consensus 36 k~sv~~G~SGVGKSTLiN~L~~~~~~~t~~iS~~-------------~~rGkHTTt---~~~l~~--l~~g---g~iiDT 94 (161)
T pfam03193 36 KTSVLAGQSGVGKSTLLNALLPELDLRTGEISEK-------------LGRGRHTTT---HVELFP--LPGG---GLLIDT 94 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHCCHHHHHHHHHHHH-------------HCCCCCEEE---EEEEEE--ECCC---CEEEEC
T ss_conf 8599988999889999988563443577753588-------------638851121---137998--0799---589858
Q ss_pred CCCCHHH
Q ss_conf 8730027
Q gi|254780321|r 86 PGHVDFT 92 (606)
Q Consensus 86 PGH~DF~ 92 (606)
||-.+|.
T Consensus 95 PG~r~f~ 101 (161)
T pfam03193 95 PGFRELG 101 (161)
T ss_pred CCCCCCC
T ss_conf 9876257
No 348
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=96.49 E-value=0.0064 Score=39.09 Aligned_cols=21 Identities=19% Similarity=0.314 Sum_probs=17.4
Q ss_pred EEEEEECCCCCCHHHHHHHHH
Q ss_conf 179998013898778899999
Q gi|254780321|r 12 RNFSIVAHIDHGKSTLADRFI 32 (606)
Q Consensus 12 RN~~IiaHvDhGKTTL~d~lL 32 (606)
..++|+|+-..|||||.-+|+
T Consensus 102 ~~v~ivG~PNVGKSTLIN~L~ 122 (156)
T cd01859 102 GKVGVVGYPNVGKSSIINALK 122 (156)
T ss_pred EEEEEECCCCCCHHHHHHHHH
T ss_conf 289998147845989999974
No 349
>pfam05049 IIGP Interferon-inducible GTPase (IIGP). Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing.
Probab=96.47 E-value=0.08 Score=31.73 Aligned_cols=159 Identities=19% Similarity=0.251 Sum_probs=89.6
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHCCEEEEEEEEEEEECCCCCEEEEEEEECCCC--C
Q ss_conf 17999801389877889999998298054444311305867798719505232799997437884389999617873--0
Q gi|254780321|r 12 RNFSIVAHIDHGKSTLADRFIQHCRGLTEREMSSQVLDNMDIERERGITIKAQTVRLNYTSTDAKDYQLNLIDTPGH--V 89 (606)
Q Consensus 12 RN~~IiaHvDhGKTTL~d~lL~~tg~i~~~~~~~~vlD~~~~EreRGITIka~~~~~~~~~~~~~~y~iNlIDTPGH--~ 89 (606)
-|||+.|-.++||||+..+|= |.-.+.+... .-|.+= .......|.+.+..+ +.|.|-||- .
T Consensus 36 lnIavtGesG~GkSsfINalR---g~g~e~~~aA----------~tGvve-tT~~~~~Y~hp~~pn--V~lwDLPG~gt~ 99 (375)
T pfam05049 36 LKIAVTGDSGNGKSSFINALR---GIGHEEDGSA----------PTGVVE-TTMKRTPYSHPHFPN--VVLWDLPGLGAT 99 (375)
T ss_pred EEEEEECCCCCCHHHHHHHHH---CCCCCCCCCC----------CCCCEE-ECCCCCCCCCCCCCC--EEEECCCCCCCC
T ss_conf 479985489986789999874---7898777768----------768766-326755678999998--079628999989
Q ss_pred HHHHHHHHH---HHHCCEEEEEEECCCCCCHHHHHHHHHH---HHCCCCEEEEECCCCCC----------CCCCCCHHHH
Q ss_conf 027999999---9730268999986878865589999999---97099679983267887----------5321133888
Q gi|254780321|r 90 DFTYEVSRS---LSACEGSLLVVDATQGVEAQTLANVYQA---IDNNHEIITVLNKADLP----------SADPDRVKKQ 153 (606)
Q Consensus 90 DF~~EV~r~---l~a~dgaiLvVdA~~Gvq~QT~~~~~~A---~~~~l~~I~viNKiD~~----------~A~~e~v~~e 153 (606)
.|..+-.-. ..-+|-=| +|++..=-+ .+.++| ..+|-+...|=+|+|.+ +-+.|++.++
T Consensus 100 ~f~~~~Yl~~~~f~~yDfFi-iiss~rf~~----n~v~LAk~i~~mgK~fyfVrtKvD~Dl~~e~~~kp~~F~~e~~Lq~ 174 (375)
T pfam05049 100 NFTVETYLEEMKFSEYDFFI-IISSERFSL----NDVKLAKAIQRMGKRFYFVRTKLDSDLSNEQKGKPQTFPKEKVLQN 174 (375)
T ss_pred CCCHHHHHHHCCCCCCCEEE-EEECCCCCH----HHHHHHHHHHHHCCCEEEEEEECCCCCHHHHHCCCCCCCHHHHHHH
T ss_conf 98989999874856477899-996775432----0189999999838947999862367606576258999998999999
Q ss_pred HHHHH-------HHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHCCC
Q ss_conf 77555-------32232100011100--2232006787763210001
Q gi|254780321|r 154 IEETI-------GISTEDALLVSAKT--GEGIPLLLERIVQQLPSPT 191 (606)
Q Consensus 154 i~~~~-------g~~~~~ii~vSAkt--G~GV~~LLd~Iv~~iP~P~ 191 (606)
|++-. |+..-.++.+|-.. -.....|-+++...+|.-+
T Consensus 175 IR~~c~~~L~k~gv~eP~VFLvSnfdl~~yDFp~L~~TL~~eLP~hK 221 (375)
T pfam05049 175 IQDNCRNNLQKEGVKEPPIFLVSNLDPSHYDFPKLRDTLLKDLPIIK 221 (375)
T ss_pred HHHHHHHHHHHCCCCCCCEEEEECCCHHHCCHHHHHHHHHHHHHHHH
T ss_conf 99999999987588899789981788132681899999998736867
No 350
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=96.46 E-value=0.042 Score=33.60 Aligned_cols=117 Identities=19% Similarity=0.308 Sum_probs=63.7
Q ss_pred HHCEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHCCEEEEEEEEEEEECCCCCEEEEEEEECCCC
Q ss_conf 25317999801389877889999998298054444311305867798719505232799997437884389999617873
Q gi|254780321|r 9 SRIRNFSIVAHIDHGKSTLADRFIQHCRGLTEREMSSQVLDNMDIERERGITIKAQTVRLNYTSTDAKDYQLNLIDTPGH 88 (606)
Q Consensus 9 ~~IRN~~IiaHvDhGKTTL~d~lL~~tg~i~~~~~~~~vlD~~~~EreRGITIka~~~~~~~~~~~~~~y~iNlIDTPGH 88 (606)
+.==||-++|-.+-|||+....++-...+.. +..+-|..| .......-..+++|+|||||-
T Consensus 29 ~~sltILvlGKtGVGKSsTINSifgE~~~~~---------~aF~~~t~r----------~~~v~~tv~G~kl~iIDTPGL 89 (249)
T cd01853 29 DFSLTILVLGKTGVGKSSTINSIFGERKAAT---------SAFQSETLR----------VREVSGTVDGFKLNIIDTPGL 89 (249)
T ss_pred CCEEEEEEEECCCCCHHHHHHHHCCCCCCCC---------CCCCCCCCC----------EEEEEEEECCEEEEEECCCCC
T ss_conf 6436999980687645776776508541344---------776778865----------089987533448998608987
Q ss_pred CHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHH-CCCCEEEEECCCCCCCCCCC--CHHHHHHHHHHHHH
Q ss_conf 0027999999973026899998687886558999999997-09967998326788753211--33888775553223
Q gi|254780321|r 89 VDFTYEVSRSLSACEGSLLVVDATQGVEAQTLANVYQAID-NNHEIITVLNKADLPSADPD--RVKKQIEETIGIST 162 (606)
Q Consensus 89 ~DF~~EV~r~l~a~dgaiLvVdA~~Gvq~QT~~~~~~A~~-~~l~~I~viNKiD~~~A~~e--~v~~ei~~~~g~~~ 162 (606)
.+=. +.+.+-.+-..-....+. ....++.++-.+|....|.. .+...|.+.||-.-
T Consensus 90 ~~~~------------------~~~~~N~k~l~~iKr~l~~~~~DvvLYvDRLD~~r~d~~D~~ll~~iT~~fG~~I 148 (249)
T cd01853 90 LESV------------------MDQRVNRKILSSIKRYLKKKTPDVVLYVDRLDMYRRDYLDLPLLRAITDSFGPSI 148 (249)
T ss_pred CCCC------------------CCCHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 7665------------------4221309999999999628999789998457662458642899999998767888
No 351
>KOG1490 consensus
Probab=96.45 E-value=0.025 Score=35.08 Aligned_cols=159 Identities=25% Similarity=0.258 Sum_probs=81.5
Q ss_pred HHCEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHCCEEEEEEEEEEEECCCCCEEEEEEEECCCC
Q ss_conf 25317999801389877889999998298054444311305867798719505232799997437884389999617873
Q gi|254780321|r 9 SRIRNFSIVAHIDHGKSTLADRFIQHCRGLTEREMSSQVLDNMDIERERGITIKAQTVRLNYTSTDAKDYQLNLIDTPGH 88 (606)
Q Consensus 9 ~~IRN~~IiaHvDhGKTTL~d~lL~~tg~i~~~~~~~~vlD~~~~EreRGITIka~~~~~~~~~~~~~~y~iNlIDTPGH 88 (606)
-+-|..+|.|--+-|||++.- .+++.+.. +-.+ -.|-| ++..-+.+.+--++-.|||||-
T Consensus 166 p~trTlllcG~PNVGKSSf~~-------~vtradve--vqpY-------aFTTk----sL~vGH~dykYlrwQViDTPGI 225 (620)
T KOG1490 166 PNTRTLLVCGYPNVGKSSFNN-------KVTRADDE--VQPY-------AFTTK----LLLVGHLDYKYLRWQVIDTPGI 225 (620)
T ss_pred CCCCEEEEECCCCCCCHHHCC-------CCCCCCCC--CCCC-------CCCCC----HHHHHHHHHHEEEEEECCCCCC
T ss_conf 886717985278877376435-------52015555--5776-------65510----1210020324023440388412
Q ss_pred CHHHHHHHH--------HHHHCC-EEEEEEECCC----CCCHHHH-HHHHHHHHCCCCEEEEECCCCCCC-CCCCCHHHH
Q ss_conf 002799999--------997302-6899998687----8865589-999999970996799832678875-321133888
Q gi|254780321|r 89 VDFTYEVSR--------SLSACE-GSLLVVDATQ----GVEAQTL-ANVYQAIDNNHEIITVLNKADLPS-ADPDRVKKQ 153 (606)
Q Consensus 89 ~DF~~EV~r--------~l~a~d-gaiLvVdA~~----Gvq~QT~-~~~~~A~~~~l~~I~viNKiD~~~-A~~e~v~~e 153 (606)
.|=--|-.. +|+-.- .+|.+.|-++ .|.+|-. +|--+-+=.+-+.|+|+||+|.-. .+.++-.++
T Consensus 226 LD~plEdrN~IEmqsITALAHLraaVLYfmDLSe~CGySva~QvkLfhsIKpLFaNK~~IlvlNK~D~m~~edL~~~~~~ 305 (620)
T KOG1490 226 LDRPEEDRNIIEMQIITALAHLRSAVLYFMDLSEMCGYSVAAQVKLYHSIKPLFANKVTILVLNKIDAMRPEDLDQKNQE 305 (620)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHEEEEECHHHHCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCHHHHH
T ss_conf 47605432179999999998756564113432212088899999999876788628846999520025686566878899
Q ss_pred HHHHH-HHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q ss_conf 77555-32232100011100223200678776321
Q gi|254780321|r 154 IEETI-GISTEDALLVSAKTGEGIPLLLERIVQQL 187 (606)
Q Consensus 154 i~~~~-g~~~~~ii~vSAktG~GV~~LLd~Iv~~i 187 (606)
+.+.+ +...-.++..|..+-+||..+=..-|+.+
T Consensus 306 ll~~~~~~~~v~v~~tS~~~eegVm~Vrt~ACe~L 340 (620)
T KOG1490 306 LLQTIIDDGNVKVVQTSCVQEEGVMDVRTTACEAL 340 (620)
T ss_pred HHHHHHHCCCCEEEEECCCCHHCEEEHHHHHHHHH
T ss_conf 99998860483388732554002000777899999
No 352
>KOG0096 consensus
Probab=96.35 E-value=0.011 Score=37.59 Aligned_cols=147 Identities=16% Similarity=0.155 Sum_probs=88.4
Q ss_pred CEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHCCEEEEEEEEEEEECCCCCEEEEEEEECCCCCH
Q ss_conf 31799980138987788999999829805444431130586779871950523279999743788438999961787300
Q gi|254780321|r 11 IRNFSIVAHIDHGKSTLADRFIQHCRGLTEREMSSQVLDNMDIERERGITIKAQTVRLNYTSTDAKDYQLNLIDTPGHVD 90 (606)
Q Consensus 11 IRN~~IiaHvDhGKTTL~d~lL~~tg~i~~~~~~~~vlD~~~~EreRGITIka~~~~~~~~~~~~~~y~iNlIDTPGH~D 90 (606)
++-.+++|-++-||||.+.|.| +|.++..--. |+-...-.+.+. .+-+..++|.-||-|..-
T Consensus 10 ~fklvlvGdgg~gKtt~vkr~l--tgeFe~~y~a---------------t~Gv~~~pl~f~-tn~g~irf~~wdtagqEk 71 (216)
T KOG0096 10 TFKLVLVGDGGTGKTTFVKRHL--TGEFEKTYPA---------------TLGVEVHPLLFD-TNRGQIRFNVWDTAGQEK 71 (216)
T ss_pred EEEEEEECCCCCCCCCHHHHHH--CCCCEECCCC---------------CCEEEEEEEEEE-CCCCCEEEEEEECCCCEE
T ss_conf 2899983478644453134353--0321021367---------------510377654550-456847888630444212
Q ss_pred HHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHH---HHCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 279999999730268999986878865589999999---97099679983267887532113388877555322321000
Q gi|254780321|r 91 FTYEVSRSLSACEGSLLVVDATQGVEAQTLANVYQA---IDNNHEIITVLNKADLPSADPDRVKKQIEETIGISTEDALL 167 (606)
Q Consensus 91 F~~EV~r~l~a~dgaiLvVdA~~Gvq~QT~~~~~~A---~~~~l~~I~viNKiD~~~A~~e~v~~ei~~~~g~~~~~ii~ 167 (606)
|++---.----..+|++..|-+.-+--+-...|+.- .-.++||+.+=||+|..+.. +...--++.-...-+-+.
T Consensus 72 ~gglrdgyyI~~qcAiimFdVtsr~t~~n~~rwhrd~~rv~~NiPiv~cGNKvDi~~r~---~k~k~v~~~~kknl~y~~ 148 (216)
T KOG0096 72 KGGLRDGYYIQGQCAIIMFDVTSRFTYKNVPRWHRDLVRVRENIPIVLCGNKVDIKARK---VKAKPVSFHRKKNLQYYE 148 (216)
T ss_pred ECCCCCCCEEECCEEEEEEEEEHHHHHHCCHHHHHHHHHHHCCCCEEEECCCEECCCCC---CCCCCCEEEECCCCEEEE
T ss_conf 32324452770214688861001455622217899999986278704544501215510---135430145215514577
Q ss_pred HHHHCCCCCCH
Q ss_conf 11100223200
Q gi|254780321|r 168 VSAKTGEGIPL 178 (606)
Q Consensus 168 vSAktG~GV~~ 178 (606)
.||+++-|.+.
T Consensus 149 ~Saksn~Nfek 159 (216)
T KOG0096 149 ISAKSNYNFER 159 (216)
T ss_pred EECCCCCCCCC
T ss_conf 40102556454
No 353
>KOG0074 consensus
Probab=96.34 E-value=0.033 Score=34.31 Aligned_cols=151 Identities=19% Similarity=0.215 Sum_probs=90.0
Q ss_pred HCEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHCCEEEEEEEEEEEECCCCCEEEEEEEECCCCC
Q ss_conf 53179998013898778899999982980544443113058677987195052327999974378843899996178730
Q gi|254780321|r 10 RIRNFSIVAHIDHGKSTLADRFIQHCRGLTEREMSSQVLDNMDIERERGITIKAQTVRLNYTSTDAKDYQLNLIDTPGHV 89 (606)
Q Consensus 10 ~IRN~~IiaHvDhGKTTL~d~lL~~tg~i~~~~~~~~vlD~~~~EreRGITIka~~~~~~~~~~~~~~y~iNlIDTPGH~ 89 (606)
.|| +...|--.+||||+.-.| .+- |--.+-+-.|..+ .++.|. .++++|+.|.-|..
T Consensus 17 Eir-illlGldnAGKTT~LKqL---~sE-----------D~~hltpT~GFn~----k~v~~~----g~f~LnvwDiGGqr 73 (185)
T KOG0074 17 EIR-ILLLGLDNAGKTTFLKQL---KSE-----------DPRHLTPTNGFNT----KKVEYD----GTFHLNVWDIGGQR 73 (185)
T ss_pred EEE-EEEEECCCCCCHHHHHHH---CCC-----------CHHHCCCCCCCCE----EEEEEC----CCEEEEEEECCCCC
T ss_conf 478-999722777613088887---137-----------8333156688524----787624----70788888527866
Q ss_pred HHHHHHHHHHHHCCEEEEEEECCCCCCHH-H-HHHHHHHHH---CCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHH---
Q ss_conf 02799999997302689999868788655-8-999999997---099679983267887532113388877555322---
Q gi|254780321|r 90 DFTYEVSRSLSACEGSLLVVDATQGVEAQ-T-LANVYQAID---NNHEIITVLNKADLPSADPDRVKKQIEETIGIS--- 161 (606)
Q Consensus 90 DF~~EV~r~l~a~dgaiLvVdA~~Gvq~Q-T-~~~~~~A~~---~~l~~I~viNKiD~~~A~~e~v~~ei~~~~g~~--- 161 (606)
-..+--+.-..-+||-|.|||+++----. + ..-..+..+ ..+|+.++-||-|+-.|-+- +++..-++++
T Consensus 74 ~IRpyWsNYyenvd~lIyVIDS~D~krfeE~~~el~ELleeeKl~~vpvlIfankQdlltaa~~---eeia~klnl~~lr 150 (185)
T KOG0074 74 GIRPYWSNYYENVDGLIYVIDSTDEKRFEEISEELVELLEEEKLAEVPVLIFANKQDLLTAAKV---EEIALKLNLAGLR 150 (185)
T ss_pred CCCHHHHHHHHCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCEEEHHHHHHHHHHCCH---HHHHHHCCHHHHH
T ss_conf 5544566555305548999847736768998899999852312200001001225678763426---7887745600220
Q ss_pred --HHHHHHHHHHCCCCCCHHHHHHHHH
Q ss_conf --3210001110022320067877632
Q gi|254780321|r 162 --TEDALLVSAKTGEGIPLLLERIVQQ 186 (606)
Q Consensus 162 --~~~ii~vSAktG~GV~~LLd~Iv~~ 186 (606)
...|-.|||.++.|+..=.+-|...
T Consensus 151 dRswhIq~csals~eg~~dg~~wv~sn 177 (185)
T KOG0074 151 DRSWHIQECSALSLEGSTDGSDWVQSN 177 (185)
T ss_pred HCEEEEEECCCCCCCCCCCCCHHHHCC
T ss_conf 104773317654556766740455449
No 354
>PRK00098 ribosome-associated GTPase; Reviewed
Probab=96.33 E-value=0.0071 Score=38.79 Aligned_cols=31 Identities=16% Similarity=0.380 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHH
Q ss_conf 8887755532232100011100223200678776
Q gi|254780321|r 151 KKQIEETIGISTEDALLVSAKTGEGIPLLLERIV 184 (606)
Q Consensus 151 ~~ei~~~~g~~~~~ii~vSAktG~GV~~LLd~Iv 184 (606)
.+++.+.+ .......++-+|.|=..|++++.
T Consensus 155 ~~~L~~~l---~~k~sv~~G~SGVGKSSLiN~L~ 185 (298)
T PRK00098 155 LDELKPLL---AGKVTVLAGQSGVGKSTLLNALV 185 (298)
T ss_pred HHHHHHHH---CCCEEEEECCCCCCHHHHHHHHC
T ss_conf 99999985---79869998789887888887607
No 355
>pfam07015 VirC1 VirC1 protein. This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon which enhances T-DNA processing probably does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA.
Probab=96.17 E-value=0.024 Score=35.28 Aligned_cols=134 Identities=14% Similarity=0.128 Sum_probs=64.5
Q ss_pred CCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCC---------HHHHHHCC-----EEE-EEEEEEE---EECCCCCEEE
Q ss_conf 0138987788999999829805444431130586---------77987195-----052-3279999---7437884389
Q gi|254780321|r 18 AHIDHGKSTLADRFIQHCRGLTEREMSSQVLDNM---------DIERERGI-----TIK-AQTVRLN---YTSTDAKDYQ 79 (606)
Q Consensus 18 aHvDhGKTTL~d~lL~~tg~i~~~~~~~~vlD~~---------~~EreRGI-----TIk-a~~~~~~---~~~~~~~~y~ 79 (606)
.-.+.||||++=.| ++.+..++..-.++|.. +.-..+|. .+- +...... +.....+.|.
T Consensus 9 ~KGG~GKtT~a~~l---a~~~~~~g~~V~liD~Dpq~s~~~W~~~a~~~~~~~~~~~v~~~~~~~~l~~~~~~~~~~~yD 85 (231)
T pfam07015 9 FKGGAGKTTALMGL---CSALASDGKRVALFEADENRPLTKWRENALRKGTWDPACEIFNADELPLLEQAYEHAEGSGFD 85 (231)
T ss_pred CCCCCCHHHHHHHH---HHHHHHCCCEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCEECCCCHHHHHHHHHHHHHCCCC
T ss_conf 79986599999999---999996899599996899868899999876468888765222056601589999988657999
Q ss_pred EEEEECCCCCHHHHHHHHHHHHCCEEEEEEECCCC--CC-HHHHHHH---HHHHHCCCCEEEEECCCCCCCCCCCCHHHH
Q ss_conf 99961787300279999999730268999986878--86-5589999---999970996799832678875321133888
Q gi|254780321|r 80 LNLIDTPGHVDFTYEVSRSLSACEGSLLVVDATQG--VE-AQTLANV---YQAIDNNHEIITVLNKADLPSADPDRVKKQ 153 (606)
Q Consensus 80 iNlIDTPGH~DF~~EV~r~l~a~dgaiLvVdA~~G--vq-~QT~~~~---~~A~~~~l~~I~viNKiD~~~A~~e~v~~e 153 (606)
+=+|||||+.. ..+..++.++|-+|+-+-.+.- .+ ++|.... .++....+|.-++++++- .+...+....
T Consensus 86 ~VIIDtpg~~s--~~~~~AI~~ADlVLIP~qpSplD~~~a~~t~~~i~~~~~~~~~~ip~avl~tRv~--~~~~~~~~~~ 161 (231)
T pfam07015 86 YALADTHGGSS--ELNNTIIASSDLLLIPTMLTPLDIDEALATYRYVIELLLTENLAIPTAILRQRVP--VGRLTSSQRF 161 (231)
T ss_pred EEEECCCCCCC--HHHHHHHHHCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECC--CCCCCHHHHH
T ss_conf 89983998575--8999999978989977899823399999999999999997378998033455114--0002178999
Q ss_pred HHHHH
Q ss_conf 77555
Q gi|254780321|r 154 IEETI 158 (606)
Q Consensus 154 i~~~~ 158 (606)
+.+.+
T Consensus 162 i~e~l 166 (231)
T pfam07015 162 CSDML 166 (231)
T ss_pred HHHHH
T ss_conf 99999
No 356
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=96.16 E-value=0.033 Score=34.35 Aligned_cols=83 Identities=25% Similarity=0.328 Sum_probs=48.4
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHCCEEEEEEEEEEEECCCCCEEEEEEEECCCCCHH-
Q ss_conf 7999801389877889999998298054444311305867798719505232799997437884389999617873002-
Q gi|254780321|r 13 NFSIVAHIDHGKSTLADRFIQHCRGLTEREMSSQVLDNMDIERERGITIKAQTVRLNYTSTDAKDYQLNLIDTPGHVDF- 91 (606)
Q Consensus 13 N~~IiaHvDhGKTTL~d~lL~~tg~i~~~~~~~~vlD~~~~EreRGITIka~~~~~~~~~~~~~~y~iNlIDTPGH~DF- 91 (606)
++.++|--++|||+....+|-.. .+..... ...+| +.+..... .+....+++|||||-.|-
T Consensus 2 rIvLlGktGsGKSstgNtILG~~-~F~s~~~------------~~svT---~~c~~~~~--~~~gr~v~VIDTPg~~dt~ 63 (196)
T cd01852 2 RLVLVGKTGAGKSATGNTILGRE-VFESKLS------------ASSVT---KTCQKESA--VWDGRRVNVIDTPGLFDTS 63 (196)
T ss_pred EEEEECCCCCCCHHHHEEECCCC-CCCCCCC------------CCCCC---EEEEEEEE--EECCCEEEEEECCCCCCCC
T ss_conf 89997899986153403256876-6678899------------99875---58888889--9889379999677635655
Q ss_pred ------HHHHHHHHHHC----CEEEEEEECCC
Q ss_conf ------79999999730----26899998687
Q gi|254780321|r 92 ------TYEVSRSLSAC----EGSLLVVDATQ 113 (606)
Q Consensus 92 ------~~EV~r~l~a~----dgaiLvVdA~~ 113 (606)
.-|+.+++..| ...|||+....
T Consensus 64 ~~~~~~~~ei~~~~~l~~pGpHa~LLVi~~~r 95 (196)
T cd01852 64 VSPEQLSKEIVRCLSLSAPGPHAFLLVVPLGR 95 (196)
T ss_pred CCHHHHHHHHHHHHHHCCCCCEEEEEEEECCC
T ss_conf 89799999999999843899739999997898
No 357
>KOG0705 consensus
Probab=96.12 E-value=0.011 Score=37.57 Aligned_cols=89 Identities=20% Similarity=0.297 Sum_probs=62.7
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHCCEEEEEEEEEEEECCCCCEEEEEEEECCCCCH--
Q ss_conf 799980138987788999999829805444431130586779871950523279999743788438999961787300--
Q gi|254780321|r 13 NFSIVAHIDHGKSTLADRFIQHCRGLTEREMSSQVLDNMDIERERGITIKAQTVRLNYTSTDAKDYQLNLIDTPGHVD-- 90 (606)
Q Consensus 13 N~~IiaHvDhGKTTL~d~lL~~tg~i~~~~~~~~vlD~~~~EreRGITIka~~~~~~~~~~~~~~y~iNlIDTPGH~D-- 90 (606)
-++|+|...+|||.|+-|.| ||+....+.-+ -+|...++| .++..|.+-+-|.-||.|
T Consensus 32 k~givg~~~sgktalvhr~l--tgty~~~e~~e-------~~~~kkE~v-----------v~gqs~lLlirdeg~~~~aQ 91 (749)
T KOG0705 32 KLGIVGTSQSGKTALVHRYL--TGTYTQDESPE-------GGRFKKEVV-----------VDGQSHLLLIRDEGGHPDAQ 91 (749)
T ss_pred HEEEEECCCCCCEEEEEEEC--CCEECCCCCCC-------CCCCEEEEE-----------EECCCEEEEEECCCCCCHHH
T ss_conf 12343035677414554100--42102245776-------766204678-----------60531166401036896266
Q ss_pred HHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 27999999973026899998687886558999999997
Q gi|254780321|r 91 FTYEVSRSLSACEGSLLVVDATQGVEAQTLANVYQAID 128 (606)
Q Consensus 91 F~~EV~r~l~a~dgaiLvVdA~~Gvq~QT~~~~~~A~~ 128 (606)
|... +|.+|+|+.-.+=...|+...++..+.
T Consensus 92 ft~w-------vdavIfvf~~~d~~s~q~v~~l~~~l~ 122 (749)
T KOG0705 92 FCQW-------VDAVVFVFSVEDEQSFQAVQALAHEMS 122 (749)
T ss_pred HHHH-------CCCEEEEEEECCCCCHHHHHHHHHHCC
T ss_conf 5430-------161699997144337999999876412
No 358
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=96.11 E-value=0.0086 Score=38.22 Aligned_cols=121 Identities=27% Similarity=0.328 Sum_probs=64.1
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCC-------CC----CCCCCCEEE-CCCHHH---HHHCCEEEEEEEEEEEE-------
Q ss_conf 999801389877889999998298-------05----444431130-586779---87195052327999974-------
Q gi|254780321|r 14 FSIVAHIDHGKSTLADRFIQHCRG-------LT----EREMSSQVL-DNMDIE---RERGITIKAQTVRLNYT------- 71 (606)
Q Consensus 14 ~~IiaHvDhGKTTL~d~lL~~tg~-------i~----~~~~~~~vl-D~~~~E---reRGITIka~~~~~~~~------- 71 (606)
++|-|-.++|||||.|+|...--. +. .+-.+..+| |..-.+ ..-++=|.+-+++-...
T Consensus 2 iGitG~pGaGKStLi~~l~~~~~~~g~~VaVlavDPsS~~sgGalLGDRiRm~~~~~~~~vfiRs~atrg~~ggla~~~~ 81 (148)
T cd03114 2 IGITGVPGAGKSTLIDALITALRARGKRVAVLAIDPSSPFSGGAILGDRIRMERHASDPGVFIRSLATRGFLGGLSRATP 81 (148)
T ss_pred EEECCCCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCCCCCHHHHHH
T ss_conf 76258997878999999999999789837999968887866862032354534415799836863466665420468899
Q ss_pred ----CCCCCEEEEEEEECCCCCHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCC
Q ss_conf ----3788438999961787300279999999730268999986878865589999999970996799832678
Q gi|254780321|r 72 ----STDAKDYQLNLIDTPGHVDFTYEVSRSLSACEGSLLVVDATQGVEAQTLANVYQAIDNNHEIITVLNKAD 141 (606)
Q Consensus 72 ----~~~~~~y~iNlIDTPGH~DF~~EV~r~l~a~dgaiLvVdA~~Gvq~QT~~~~~~A~~~~l~~I~viNKiD 141 (606)
..+...|-+=||.|-| +=..|+. ...++|-.++|++...|=+-|.. ++--..+.=++||||.|
T Consensus 82 ~~i~~l~~~g~D~IiIETvG--vGQse~~-i~~~aD~~i~v~~p~~GD~iQ~~----K~gi~e~aDl~vvNK~D 148 (148)
T cd03114 82 EVIRVLDAAGFDVIIVETVG--VGQSEVD-IASMADTTVVVMAPGAGDDIQAI----KAGIMEIADIVVVNKAD 148 (148)
T ss_pred HHHHHHHHCCCCEEEEECCC--CCCCHHH-HHHHCCEEEEEECCCCCCHHHHC----CCCHHHCCCEEEEECCC
T ss_conf 99999997599989997487--7756026-55435669999636887377611----22852124699993789
No 359
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=96.05 E-value=0.032 Score=34.36 Aligned_cols=50 Identities=30% Similarity=0.442 Sum_probs=34.0
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHCCEEEEEEEEEEEECCCCCEEEEEEEECCCCCHH
Q ss_conf 7999801389877889999998298054444311305867798719505232799997437884389999617873002
Q gi|254780321|r 13 NFSIVAHIDHGKSTLADRFIQHCRGLTEREMSSQVLDNMDIERERGITIKAQTVRLNYTSTDAKDYQLNLIDTPGHVDF 91 (606)
Q Consensus 13 N~~IiaHvDhGKTTL~d~lL~~tg~i~~~~~~~~vlD~~~~EreRGITIka~~~~~~~~~~~~~~y~iNlIDTPGH~DF 91 (606)
=|+|+|..++|||||.++|+... ++||..+ ..+.+.+. ++. +|+||---|
T Consensus 4 ii~ivG~s~SGKTTLi~kli~~l-------------------~~~G~rV----~~IKH~~H---~f~---~D~pGkDS~ 53 (170)
T PRK10751 4 LLAIAAWSGTGKTTLLKKLIPAL-------------------CARGIRP----GLIKHTHH---DMD---VDKPGKDSY 53 (170)
T ss_pred EEEEEECCCCCHHHHHHHHHHHH-------------------HHCCCEE----EEEECCCC---CCC---CCCCCCCCH
T ss_conf 79999469999999999999999-------------------9879849----99945777---888---999984109
No 360
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=96.03 E-value=0.045 Score=33.42 Aligned_cols=51 Identities=27% Similarity=0.546 Sum_probs=35.3
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHCCEEEEEEEEEEEECCCCCEEEEEEEECCCCCHH
Q ss_conf 17999801389877889999998298054444311305867798719505232799997437884389999617873002
Q gi|254780321|r 12 RNFSIVAHIDHGKSTLADRFIQHCRGLTEREMSSQVLDNMDIERERGITIKAQTVRLNYTSTDAKDYQLNLIDTPGHVDF 91 (606)
Q Consensus 12 RN~~IiaHvDhGKTTL~d~lL~~tg~i~~~~~~~~vlD~~~~EreRGITIka~~~~~~~~~~~~~~y~iNlIDTPGH~DF 91 (606)
|=|+|+|.-++|||||.++|+... ++||.++ ..+.+.+. ++. +|+||---|
T Consensus 2 kii~ivG~snSGKTTLi~kli~~l-------------------~~~G~~V----~~iKH~~H---~f~---~D~~GkDS~ 52 (159)
T cd03116 2 KVIGFVGYSGSGKTTLLEKLIPAL-------------------SARGLRV----AVIKHDHH---DFD---IDTPGKDSY 52 (159)
T ss_pred EEEEEEECCCCCHHHHHHHHHHHH-------------------HHCCCEE----EEEEECCC---CCC---CCCCCCHHH
T ss_conf 299999679999999999999999-------------------9779859----89973476---777---778984417
No 361
>KOG0077 consensus
Probab=96.02 E-value=0.079 Score=31.75 Aligned_cols=78 Identities=15% Similarity=0.207 Sum_probs=45.9
Q ss_pred EEEEEECCCCCHHHHHHHHHHHHCCEEEEEEECCCCCCHH-HHHHHH--HHHH--CCCCEEEEECCCCCCCCCCCCHHHH
Q ss_conf 9999617873002799999997302689999868788655-899999--9997--0996799832678875321133888
Q gi|254780321|r 79 QLNLIDTPGHVDFTYEVSRSLSACEGSLLVVDATQGVEAQ-TLANVY--QAID--NNHEIITVLNKADLPSADPDRVKKQ 153 (606)
Q Consensus 79 ~iNlIDTPGH~DF~~EV~r~l~a~dgaiLvVdA~~Gvq~Q-T~~~~~--~A~~--~~l~~I~viNKiD~~~A~~e~v~~e 153 (606)
++.-+|--||.-=.---......|+|.+.+|||.+--.-| .+.++. +..+ ..+|.++..||||+|.|- ..+|
T Consensus 65 ~ftt~DLGGH~qArr~wkdyf~~v~~iv~lvda~d~er~~es~~el~~ll~~e~la~vp~lilgnKId~~~a~---se~~ 141 (193)
T KOG0077 65 TFTTFDLGGHLQARRVWKDYFPQVDAIVYLVDAYDQERFAESKKELDALLSDESLATVPFLILGNKIDIPYAA---SEDE 141 (193)
T ss_pred EEEEECCCCHHHHHHHHHHHHHHHCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCC---CHHH
T ss_conf 5899725667999988887876543168530112177767789999988768877158610111655688733---3799
Q ss_pred HHHHHH
Q ss_conf 775553
Q gi|254780321|r 154 IEETIG 159 (606)
Q Consensus 154 i~~~~g 159 (606)
+...++
T Consensus 142 l~~~l~ 147 (193)
T KOG0077 142 LRFHLG 147 (193)
T ss_pred HHHHHH
T ss_conf 989999
No 362
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=96.02 E-value=0.012 Score=37.23 Aligned_cols=20 Identities=15% Similarity=0.310 Sum_probs=15.3
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q ss_conf 79998013898778899999
Q gi|254780321|r 13 NFSIVAHIDHGKSTLADRFI 32 (606)
Q Consensus 13 N~~IiaHvDhGKTTL~d~lL 32 (606)
.++|+|--..|||||.-+|+
T Consensus 104 ~v~ivG~PNVGKSSlIN~L~ 123 (157)
T cd01858 104 SVGFIGYPNVGKSSIINTLR 123 (157)
T ss_pred EEEEEECCCCCHHHHHHHHH
T ss_conf 99998258853368898872
No 363
>PHA02518 ParA-like protein; Provisional
Probab=96.01 E-value=0.034 Score=34.25 Aligned_cols=78 Identities=9% Similarity=0.069 Sum_probs=41.7
Q ss_pred EEEEEEEECCCCCHHHHHHHHHHHHCCEEEEEEECCCC-CC--HHHHHHHHHHH--HCCCCEEEE-ECCCCCCCCCCCCH
Q ss_conf 38999961787300279999999730268999986878-86--55899999999--709967998-32678875321133
Q gi|254780321|r 77 DYQLNLIDTPGHVDFTYEVSRSLSACEGSLLVVDATQG-VE--AQTLANVYQAI--DNNHEIITV-LNKADLPSADPDRV 150 (606)
Q Consensus 77 ~y~iNlIDTPGH~DF~~EV~r~l~a~dgaiLvVdA~~G-vq--~QT~~~~~~A~--~~~l~~I~v-iNKiD~~~A~~e~v 150 (606)
+|-+=+|||||+. +.....+|.++|.+|+-+....- ++ .++...+..+. ..+++...+ +|..+.......++
T Consensus 76 ~yD~viID~pp~~--~~~~~~al~aaD~vliP~~ps~~d~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 153 (211)
T PHA02518 76 GYDYVVVDGAPQD--SELARAALRIADMVLIPVQPSPFDIWAAPDLVELIKARQEVTDGLPKFAFIISRAIKNTQLYREA 153 (211)
T ss_pred CCCEEEECCCCCC--HHHHHHHHHHCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHH
T ss_conf 7888998899974--29999999958969996378687899999999999999986656751688862358665699999
Q ss_pred HHHHHH
Q ss_conf 888775
Q gi|254780321|r 151 KKQIEE 156 (606)
Q Consensus 151 ~~ei~~ 156 (606)
.+.+++
T Consensus 154 ~~~l~~ 159 (211)
T PHA02518 154 RKALAG 159 (211)
T ss_pred HHHHHH
T ss_conf 999998
No 364
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=95.93 E-value=0.048 Score=33.24 Aligned_cols=113 Identities=24% Similarity=0.310 Sum_probs=61.1
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHCCEEEEEEEEEEEECCCCCEEEEEEEECCCCC----
Q ss_conf 9998013898778899999982980544443113058677987195052327999974378843899996178730----
Q gi|254780321|r 14 FSIVAHIDHGKSTLADRFIQHCRGLTEREMSSQVLDNMDIERERGITIKAQTVRLNYTSTDAKDYQLNLIDTPGHV---- 89 (606)
Q Consensus 14 ~~IiaHvDhGKTTL~d~lL~~tg~i~~~~~~~~vlD~~~~EreRGITIka~~~~~~~~~~~~~~y~iNlIDTPGH~---- 89 (606)
+-|||.-++||||+ |..+|. .-. +-|.+.-..-+|+-= +-.+.|--.+ + -=||||.|.-
T Consensus 114 YlviG~~gsGKTt~----l~~Sgl-~fP-----l~~~~~~~~~~g~gg---t~~cdwwft~--~--AVliDtaGry~~Q~ 176 (1169)
T TIGR03348 114 YLVIGPPGSGKTTL----LQNSGL-KFP-----LAERLGAAALRGVGG---TRNCDWWFTD--E--AVLIDTAGRYTTQD 176 (1169)
T ss_pred EEEECCCCCCHHHH----HHHCCC-CCC-----CCCCCCHHHCCCCCC---CCCCCEEEEC--C--EEEEECCCCEECCC
T ss_conf 89978999866899----983799-887-----741001122158899---8555716527--8--79994797602688
Q ss_pred -----H------HHHHHHH--HHHHCCEEEEEEECCCCC---CHHHHH----------HHHHHHHCCCCEEEEECCCCCC
Q ss_conf -----0------2799999--997302689999868788---655899----------9999997099679983267887
Q gi|254780321|r 90 -----D------FTYEVSR--SLSACEGSLLVVDATQGV---EAQTLA----------NVYQAIDNNHEIITVLNKADLP 143 (606)
Q Consensus 90 -----D------F~~EV~r--~l~a~dgaiLvVdA~~Gv---q~QT~~----------~~~~A~~~~l~~I~viNKiD~~ 143 (606)
| |-.-..+ .-+...|+||.||..+=. ..+-.. -+...+...+|+-++++|+|+-
T Consensus 177 ~~~~~d~~~W~~fL~lLkk~R~r~piNGvil~is~~~Ll~~~~~~~~~~a~~lr~Rl~El~~~lg~~~PVYv~~TK~Dll 256 (1169)
T TIGR03348 177 SDPEEDAAAWLGFLGLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQLGARFPVYLVLTKADLL 256 (1169)
T ss_pred CCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECHHHH
T ss_conf 86400189999999999864898998768999789997478999999999999999999999829987759986640123
No 365
>COG0523 Putative GTPases (G3E family) [General function prediction only]
Probab=95.92 E-value=0.055 Score=32.81 Aligned_cols=157 Identities=23% Similarity=0.288 Sum_probs=77.7
Q ss_pred EEECCCCCCHHHHHHHHHHHCCCC----CCCCCCCEEECC-CHHHHHHCCEEE--EE---EEEEE----------EECCC
Q ss_conf 998013898778899999982980----544443113058-677987195052--32---79999----------74378
Q gi|254780321|r 15 SIVAHIDHGKSTLADRFIQHCRGL----TEREMSSQVLDN-MDIERERGITIK--AQ---TVRLN----------YTSTD 74 (606)
Q Consensus 15 ~IiaHvDhGKTTL~d~lL~~tg~i----~~~~~~~~vlD~-~~~EreRGITIk--a~---~~~~~----------~~~~~ 74 (606)
-|-|--++|||||.-+||..-..- --+|.++-=.|. .-+++ -+.-++ ++ +|++. +...+
T Consensus 5 vitGFLGsGKTTlL~~lL~~~~g~kiAVIVNEfGEvgID~~~~l~~-~~e~~~El~nGCICCT~r~dl~~~~~~L~~~~~ 83 (323)
T COG0523 5 VITGFLGSGKTTLLNHLLANRDGKKIAVIVNEFGEVGIDGGALLSD-TGEEVVELTNGCICCTVRDDLLPALERLLRRRD 83 (323)
T ss_pred EEEECCCCCHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCCCC-CCCCEEEECCCCEEEECCCHHHHHHHHHHHCCC
T ss_conf 9811677998999999985458980799985574022167764134-897579836970787034215899999985256
Q ss_pred CCEEEEEEEECCCCCH-------HHH-HHHHHHHHCCEEEEEEECCCCCCHHH----HHHHHHHHHCCCCEEEEECCCCC
Q ss_conf 8438999961787300-------279-99999973026899998687886558----99999999709967998326788
Q gi|254780321|r 75 AKDYQLNLIDTPGHVD-------FTY-EVSRSLSACEGSLLVVDATQGVEAQT----LANVYQAIDNNHEIITVLNKADL 142 (606)
Q Consensus 75 ~~~y~iNlIDTPGH~D-------F~~-EV~r~l~a~dgaiLvVdA~~Gvq~QT----~~~~~~A~~~~l~~I~viNKiD~ 142 (606)
+-||. +|-|-|=+| |.. +..+..-..|+.+-||||....+-.. .+.-++|.. =++++||.|+
T Consensus 84 ~~D~i--vIEtTGlA~P~pv~~t~~~~~~l~~~~~ld~vvtvVDa~~~~~~~~~~~~~~~~Qia~A----D~ivlNK~Dl 157 (323)
T COG0523 84 RPDRL--VIETTGLADPAPVIQTFLTDPELADGVRLDGVVTVVDAAHFLEGLDAIAELAEDQLAFA----DVIVLNKTDL 157 (323)
T ss_pred CCCEE--EEECCCCCCCHHHHHHHHCCCCCCCCEEECCEEEEEEHHHHHHHHHHHHHHHHHHHHHC----CEEEEECCCC
T ss_conf 89989--99688777869999986065122454041336999847886545677999999999867----9999836456
Q ss_pred CCCCCCCHHHHHHHHH-HHHH-HHHHHHHHHCCCCCCHHHHH
Q ss_conf 7532113388877555-3223-21000111002232006787
Q gi|254780321|r 143 PSADPDRVKKQIEETI-GIST-EDALLVSAKTGEGIPLLLER 182 (606)
Q Consensus 143 ~~A~~e~v~~ei~~~~-g~~~-~~ii~vSAktG~GV~~LLd~ 182 (606)
.++. . .+.++..+ .+.+ -.++..|. .+.+...+|+.
T Consensus 158 v~~~--~-l~~l~~~l~~lnp~A~i~~~~~-~~~~~~~ll~~ 195 (323)
T COG0523 158 VDAE--E-LEALEARLRKLNPRARIIETSY-GDVDLAELLDE 195 (323)
T ss_pred CCHH--H-HHHHHHHHHHHCCCCEEEECCC-CCCCHHHHHCC
T ss_conf 8988--9-9999999997599986998123-66877886366
No 366
>PRK09601 translation-associated GTPase; Reviewed
Probab=95.92 E-value=0.13 Score=30.31 Aligned_cols=89 Identities=18% Similarity=0.156 Sum_probs=50.3
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCC-----------CCCCCEEECCCHHHHHHCCEEEEEEEEEEEECCCCCEEEEE
Q ss_conf 7999801389877889999998298054-----------44431130586779871950523279999743788438999
Q gi|254780321|r 13 NFSIVAHIDHGKSTLADRFIQHCRGLTE-----------REMSSQVLDNMDIERERGITIKAQTVRLNYTSTDAKDYQLN 81 (606)
Q Consensus 13 N~~IiaHvDhGKTTL~d~lL~~tg~i~~-----------~~~~~~vlD~~~~EreRGITIka~~~~~~~~~~~~~~y~iN 81 (606)
.++|||--..|||||--+| |+.-.+ +.+.-.|-| +|-.-++ . .|.+...---.++
T Consensus 4 kiGivGlPnvGKSTlFnal---T~~~~~~~nyPf~Ti~pn~g~v~VpD----~r~~~l~------~-~~~p~k~i~a~v~ 69 (364)
T PRK09601 4 KCGIVGLPNVGKSTLFNAL---TKAGAEAANYPFCTIEPNVGIVPVPD----PRLDKLA------E-IVKPKKIVPTTIE 69 (364)
T ss_pred EEEEECCCCCCHHHHHHHH---HCCCCCCCCCCCCCCCCCEEEEECCC----HHHHHHH------H-HHCCCCEEEEEEE
T ss_conf 4888779999889999999---67998645899888788006885785----4589998------7-6287650112589
Q ss_pred EEECCCCCHH-------HHHHHHHHHHCCEEEEEEECCCCC
Q ss_conf 9617873002-------799999997302689999868788
Q gi|254780321|r 82 LIDTPGHVDF-------TYEVSRSLSACEGSLLVVDATQGV 115 (606)
Q Consensus 82 lIDTPGH~DF-------~~EV~r~l~a~dgaiLvVdA~~Gv 115 (606)
++|.||-+-- +...-..+|.||+-+.||+|.+--
T Consensus 70 ~vDiaGLv~gAs~G~GLGN~FL~~iR~~DaiihVVr~F~d~ 110 (364)
T PRK09601 70 FVDIAGLVKGASKGEGLGNKFLANIREVDAIVHVVRCFEDD 110 (364)
T ss_pred EEECCCCCCCCCCCCCCHHHHHHHHHHCCEEEEEEECCCCC
T ss_conf 99657767875346774289999887347567750002687
No 367
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=95.84 E-value=0.021 Score=35.66 Aligned_cols=20 Identities=35% Similarity=0.388 Sum_probs=12.4
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q ss_conf 79998013898778899999
Q gi|254780321|r 13 NFSIVAHIDHGKSTLADRFI 32 (606)
Q Consensus 13 N~~IiaHvDhGKTTL~d~lL 32 (606)
.++|+|.-.-|||||.-+|+
T Consensus 117 ~v~ivG~PNVGKSSlIN~L~ 136 (171)
T cd01856 117 RAMVVGIPNVGKSTLINRLR 136 (171)
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 79997379876179999974
No 368
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein B; InterPro: IPR004435 The majority of molybdenum-containing enzymes utilise a molybdenum cofactor (MoCF or Moco) consisting of a Mo atom coordinated via a cisdithiolene moiety to molybdopterin (MPT). MoCF is ubiquitous in nature, and the pathway for MoCF biosynthesis is conserved in all three domains of life. MoCF-containing enzymes function as oxidoreductases in carbon, nitrogen, and sulphur metabolism , . In Escherichia coli, biosynthesis of MoCF is a three stage process. It begins with the MoaA and MoaC conversion of GTP to the meta-stable pterin intermediate precursor Z. The second stage involves MPT synthase (MoaD and MoaE), which coverts precursor Z to MPT; MoeB is involved in the recycling of MPT synthase. The final step in MoCF synthesis is the attachment of mononuclear Mo to MPT, a process that requires MoeA and which is enhanced by MogA in an Mg2 ATP-dependent manner . MoCF is the active co-factor in eukaryotic and some prokaryotic molybdoenzymes, but the majority of bacterial enzymes requiring MoCF, need a modification of MTP for it to be active; MobA is involved in the attachment of a nucleotide monophosphate to MPT resulting in the MGD co-factor, the active co-factor for most prokaryotic molybdoenzymes. Bacterial two-hybrid studies have revealed the close interactions between MoeA, MogA, and MobA in the synthesis of MoCF . Moreover the close functional association of MoeA and MogA in the synthesis of MoCF is supported by fact that the known eukaryotic homologues to MoeA and MogA exist as fusion proteins: CNX1 () of Arabidopsis thaliana (Mouse-ear cress), mammalian Gephryin (e.g. Q9NQX3 from SWISSPROT) and Drosophila melanogaster (Fruit fly) Cinnamon (P39205 from SWISSPROT) . The MobB domain is similar to that of the urease accessory protein UreG and the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocentres of their respective target enzymes. It is involved in the final step of molybdenum-cofactor biosynthesis. While its precise function has not been identified it is thought to be involved in the transfer of a guanine dinucleotide moiety to molybdopterin, as it shows GTP-binding and weak GTPase activity . The MobB protein (P32125 from SWISSPROT) from Escherichia coli, which is comprised of this domain, is a homodimer . Each molecule is composed of two distinct regions - an outer region comprised of 6 beta-strands and three alpha helices, and an inner region comprised of a two-strand beta hairpin followed by an alpha helix. These regions require interaction with the second monomer to allow proper folding to occur. The two monomers are intertwined and form an extensive 16-stranded beta-sheet. While the active site could not be positively identified, the presence of highly conserved residues suggests the substrate binding site occurs in the central solvent channel.; GO: 0005525 GTP binding, 0006777 Mo-molybdopterin cofactor biosynthetic process.
Probab=95.83 E-value=0.02 Score=35.76 Aligned_cols=50 Identities=26% Similarity=0.516 Sum_probs=34.8
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHCCEEEEEEEEEEEECCCCCEEEEEEEECCCCC
Q ss_conf 9998013898778899999982980544443113058677987195052327999974378843899996178730
Q gi|254780321|r 14 FSIVAHIDHGKSTLADRFIQHCRGLTEREMSSQVLDNMDIERERGITIKAQTVRLNYTSTDAKDYQLNLIDTPGHV 89 (606)
Q Consensus 14 ~~IiaHvDhGKTTL~d~lL~~tg~i~~~~~~~~vlD~~~~EreRGITIka~~~~~~~~~~~~~~y~iNlIDTPGH~ 89 (606)
|+|+|--|+|||||.++++... ++||+|+ ..+.+.+....+.. ||.||--
T Consensus 2 ~~i~G~k~SGKTtL~~~l~~~L-------------------~~~Gy~V----~~IKH~ghG~H~~~---~d~~GkD 51 (165)
T TIGR00176 2 LQIVGYKNSGKTTLIERLVKAL-------------------KARGYRV----ATIKHDGHGHHDFD---IDKEGKD 51 (165)
T ss_pred EEEEEECCCCHHHHHHHHHHHH-------------------HCCCCCE----EEEEECCCCCCCCE---ECCCCCC
T ss_conf 3789625886789999999999-------------------7079950----89860898887565---2799873
No 369
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=95.80 E-value=0.021 Score=35.61 Aligned_cols=100 Identities=19% Similarity=0.266 Sum_probs=51.6
Q ss_pred EEEEEEECCCCCHHHHHHHHHHHHCCEEEEEEECCCCCC----HHHHHH--HHHHHHCCCCEE---EEECCCCCCCCCCC
Q ss_conf 899996178730027999999973026899998687886----558999--999997099679---98326788753211
Q gi|254780321|r 78 YQLNLIDTPGHVDFTYEVSRSLSACEGSLLVVDATQGVE----AQTLAN--VYQAIDNNHEII---TVLNKADLPSADPD 148 (606)
Q Consensus 78 y~iNlIDTPGH~DF~~EV~r~l~a~dgaiLvVdA~~Gvq----~QT~~~--~~~A~~~~l~~I---~viNKiD~~~A~~e 148 (606)
|.+.+.|-||- |.-++.+.+..-+ .++|+.=.+=.- ..-... ...+.+.|+++. .+=-| -+...+
T Consensus 69 ~VvDi~Df~gS--~~~~l~~~~~~~~-v~lV~NK~DLLP~~~~~~~i~~wv~~~~~~~gl~~~~V~lvSa~---~g~gi~ 142 (360)
T TIGR03597 69 YVVDIFDFEGS--LIPELKRFVGGNP-VLLVGNKIDLLPKSVNLSKIKEWMKKRAKELGLKPVDIILVSAK---KGNGID 142 (360)
T ss_pred EEEECCCCCCC--HHHHHHHHHCCCC-EEEEEEHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEECC---CCCCHH
T ss_conf 99864147765--3464999838985-89999805428876787999999999999859983668999688---898999
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q ss_conf 33888775553223210001110022320067877632
Q gi|254780321|r 149 RVKKQIEETIGISTEDALLVSAKTGEGIPLLLERIVQQ 186 (606)
Q Consensus 149 ~v~~ei~~~~g~~~~~ii~vSAktG~GV~~LLd~Iv~~ 186 (606)
++.+.|++.- ...| +++=+.++.|=..|++++.+.
T Consensus 143 ~l~~~i~~~~--~~~d-vyvvG~tNvGKSTliN~Ll~~ 177 (360)
T TIGR03597 143 ELLDKIKKAR--NKKD-VYVVGVTNVGKSSLINKLLKQ 177 (360)
T ss_pred HHHHHHHHHH--CCCC-EEEECCCCCCHHHHHHHHHHH
T ss_conf 9999999871--6995-899916866589999999876
No 370
>pfam05783 DLIC Dynein light intermediate chain (DLIC). This family consists of several eukaryotic dynein light intermediate chain proteins. The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo.
Probab=95.78 E-value=0.066 Score=32.29 Aligned_cols=59 Identities=17% Similarity=0.210 Sum_probs=34.2
Q ss_pred CCCCEEEEECCCCCCCCC-CC-CHHHHHHHHH-------HH-HHHHHHHHHHHCCCCCCHHHHHHHHHH
Q ss_conf 099679983267887532-11-3388877555-------32-232100011100223200678776321
Q gi|254780321|r 129 NNHEIITVLNKADLPSAD-PD-RVKKQIEETI-------GI-STEDALLVSAKTGEGIPLLLERIVQQL 187 (606)
Q Consensus 129 ~~l~~I~viNKiD~~~A~-~e-~v~~ei~~~~-------g~-~~~~ii~vSAktG~GV~~LLd~Iv~~i 187 (606)
.|+|+++|++|-|.-..- -| ...+|-+|++ -+ ...-.+|+|+|...|++-|...|..++
T Consensus 214 LGiPIvVV~tKsD~me~LEKe~dy~dEhFDfIqq~LR~fCLqyGAALiYTSvKe~kN~dlLykYl~HRi 282 (490)
T pfam05783 214 LGIPVVVVCTKCDAMSVLEKEHDYRDEHFDFIQSHIRRFCLQYGAALIYTSVKEEKNLDLLYKYLVHKI 282 (490)
T ss_pred CCCCEEEEEECCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 798779999464188887651262067789999999999986196578852354501899999999886
No 371
>pfam02492 cobW CobW/HypB/UreG, nucleotide-binding domain. This domain is found in HypB, a hydrogenase expression / formation protein, and UreG a urease accessory protein. Both these proteins contain a P-loop nucleotide binding motif. HypB has GTPase activity and is a guanine nucleotide binding protein. It is not known whether UreG binds GTP or some other nucleotide. Both enzymes are involved in nickel binding. HypB can store nickel and is required for nickel dependent hydrogenase expression. UreG is required for functional incorporation of the urease nickel metallocenter. GTP hydrolysis may required by these proteins for nickel incorporation into other nickel proteins. This family of domains also contains P47K, a Pseudomonas chlororaphis protein needed for nitrile hydratase expression, and the cobW gene product, which may be involved in cobalamin biosynthesis in Pseudomonas denitrificans.
Probab=95.74 E-value=0.098 Score=31.12 Aligned_cols=135 Identities=20% Similarity=0.278 Sum_probs=64.4
Q ss_pred EECCCCCCHHHHHHHHHHHCCC-----CCCCCCCCEEECCCHHHHHHCCEEEEEE-----EEEE---------EECCCCC
Q ss_conf 9801389877889999998298-----0544443113058677987195052327-----9999---------7437884
Q gi|254780321|r 16 IVAHIDHGKSTLADRFIQHCRG-----LTEREMSSQVLDNMDIERERGITIKAQT-----VRLN---------YTSTDAK 76 (606)
Q Consensus 16 IiaHvDhGKTTL~d~lL~~tg~-----i~~~~~~~~vlD~~~~EreRGITIka~~-----~~~~---------~~~~~~~ 76 (606)
|-|--++|||||..++|..... +-..+.++.=.|..-+ ++.|..+..=+ +++. +......
T Consensus 5 itGFLGsGKTTll~~ll~~~~~~~~~avI~Ne~g~~~iD~~ll-~~~~~~v~el~~GciCc~~~~d~~~~l~~l~~~~~~ 83 (174)
T pfam02492 5 LTGFLGSGKTTLLEHLLRDNREGLKIAVIVNDFGETGIDAELL-RETGAEIVELNNGCICCTIREDLSMVLEALLELKLP 83 (174)
T ss_pred EECCCCCCHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHH-HHCCCEEEEECCCCCCCCCCHHHHHHHHHHHHCCCC
T ss_conf 9348878899999999984448984799993365302079998-706961899748866454333699999999855789
Q ss_pred EEEEEEEECCCCCHHHHHHHHHH--HHCCEEEEEEECCC---CCCHHHHHHHHHHHHCCCCEEEEECCCCCCCC-C-CCC
Q ss_conf 38999961787300279999999--73026899998687---88655899999999709967998326788753-2-113
Q gi|254780321|r 77 DYQLNLIDTPGHVDFTYEVSRSL--SACEGSLLVVDATQ---GVEAQTLANVYQAIDNNHEIITVLNKADLPSA-D-PDR 149 (606)
Q Consensus 77 ~y~iNlIDTPGH~DF~~EV~r~l--~a~dgaiLvVdA~~---Gvq~QT~~~~~~A~~~~l~~I~viNKiD~~~A-~-~e~ 149 (606)
++-.=||.|-|-+|-.. +.+.. -..++.+-||||.. +...+... ..+...-=++++||+|+.+. + .+.
T Consensus 84 ~~d~iiIE~sGla~p~~-i~~~~~~~~~~~~i~vvDa~~~~~~~~~~~~~----~~Qi~~AD~vvlNK~Dl~~~~~~l~~ 158 (174)
T pfam02492 84 RLDLLFIETTGLACPAP-VLDLRSDLGLDGVVTVVDVKNFTEGEDIPEKA----PDQIAFADLIVINKTDLAPAVGALEK 158 (174)
T ss_pred CCCEEEEECCCCCCHHH-HHHHHHCCCCCEEEEEEECHHHHHCCCCHHHH----HHHHHHCCEEEEEHHHCCCCHHHHHH
T ss_conf 99999995876677077-77653202654599999723433002007899----99998769999846653782769999
Q ss_pred HHHHHHH
Q ss_conf 3888775
Q gi|254780321|r 150 VKKQIEE 156 (606)
Q Consensus 150 v~~ei~~ 156 (606)
+.+.+..
T Consensus 159 ~~~~i~~ 165 (174)
T pfam02492 159 LEADLRR 165 (174)
T ss_pred HHHHHHH
T ss_conf 9999999
No 372
>COG1162 Predicted GTPases [General function prediction only]
Probab=95.72 E-value=0.013 Score=37.03 Aligned_cols=13 Identities=23% Similarity=0.544 Sum_probs=5.3
Q ss_pred HCCCCCCHHHHHH
Q ss_conf 0022320067877
Q gi|254780321|r 171 KTGEGIPLLLERI 183 (606)
Q Consensus 171 ktG~GV~~LLd~I 183 (606)
-+|.|=..|++++
T Consensus 172 qSGVGKSSLiN~L 184 (301)
T COG1162 172 QSGVGKSTLINAL 184 (301)
T ss_pred CCCCCHHHHHHHH
T ss_conf 8877699988741
No 373
>PRK13849 putative crown gall tumor protein VirC1; Provisional
Probab=95.68 E-value=0.032 Score=34.40 Aligned_cols=79 Identities=11% Similarity=0.077 Sum_probs=42.7
Q ss_pred CEEEEEEEECCCCCHHHHHHHHHHHHCCEEEEEEECCCC--CC-HHHHHHHHH---HHHCCCCEEEEECCCCCCCCCCCC
Q ss_conf 438999961787300279999999730268999986878--86-558999999---997099679983267887532113
Q gi|254780321|r 76 KDYQLNLIDTPGHVDFTYEVSRSLSACEGSLLVVDATQG--VE-AQTLANVYQ---AIDNNHEIITVLNKADLPSADPDR 149 (606)
Q Consensus 76 ~~y~iNlIDTPGH~DF~~EV~r~l~a~dgaiLvVdA~~G--vq-~QT~~~~~~---A~~~~l~~I~viNKiD~~~A~~e~ 149 (606)
..|-+=||||||+.+ ..+..+++++|-+|+-+-.+.- .+ .+|...+.. +....++.-+++|++- .+...+
T Consensus 82 ~~~D~VIIDtpg~~s--~~~~~Ai~~ADLVLIP~qPSp~D~~~a~~tv~~i~~~~~~~~~~ip~~vlltRv~--a~~~t~ 157 (231)
T PRK13849 82 QGFDYALADTHGGSS--ELNNTIIASSNLLLIPTMLTPLDIDEALSTYRYVIELLLSENLAIPTAILRQRVP--VGRLTT 157 (231)
T ss_pred CCCCEEEECCCCCCC--HHHHHHHHHCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECC--HHHHCH
T ss_conf 699889981899775--8999999978989977999866799999999999999997287886566654050--454068
Q ss_pred HHHHHHHHH
Q ss_conf 388877555
Q gi|254780321|r 150 VKKQIEETI 158 (606)
Q Consensus 150 v~~ei~~~~ 158 (606)
....+.+.+
T Consensus 158 ~~~~i~~~l 166 (231)
T PRK13849 158 SQRAMSDML 166 (231)
T ss_pred HHHHHHHHH
T ss_conf 899999999
No 374
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=95.64 E-value=0.027 Score=34.93 Aligned_cols=51 Identities=24% Similarity=0.575 Sum_probs=34.0
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHCCEEEEEEEEEEEECCCCCEEEEEEEECCCCCHH
Q ss_conf 17999801389877889999998298054444311305867798719505232799997437884389999617873002
Q gi|254780321|r 12 RNFSIVAHIDHGKSTLADRFIQHCRGLTEREMSSQVLDNMDIERERGITIKAQTVRLNYTSTDAKDYQLNLIDTPGHVDF 91 (606)
Q Consensus 12 RN~~IiaHvDhGKTTL~d~lL~~tg~i~~~~~~~~vlD~~~~EreRGITIka~~~~~~~~~~~~~~y~iNlIDTPGH~DF 91 (606)
.=|+|+|--|+|||||.++++... ++||+++ ..+.+.+.+ .. +|+||--.+
T Consensus 3 ~Il~ivG~k~SGKTTLie~lv~~L-------------------~~~G~rV----a~iKH~hh~---~~---~D~~GkDs~ 53 (161)
T COG1763 3 KILGIVGYKNSGKTTLIEKLVRKL-------------------KARGYRV----ATVKHAHHD---FD---LDKPGKDTY 53 (161)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHH-------------------HHCCCEE----EEEEECCCC---CC---CCCCCCCCC
T ss_conf 289999627997342899999999-------------------7579379----999865877---77---788987661
No 375
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=95.63 E-value=0.021 Score=35.62 Aligned_cols=58 Identities=26% Similarity=0.352 Sum_probs=35.5
Q ss_pred HHCEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHCCEEEEEEEEEEEECCCCCEEEEEEEECCCC
Q ss_conf 25317999801389877889999998298054444311305867798719505232799997437884389999617873
Q gi|254780321|r 9 SRIRNFSIVAHIDHGKSTLADRFIQHCRGLTEREMSSQVLDNMDIERERGITIKAQTVRLNYTSTDAKDYQLNLIDTPGH 88 (606)
Q Consensus 9 ~~IRN~~IiaHvDhGKTTL~d~lL~~tg~i~~~~~~~~vlD~~~~EreRGITIka~~~~~~~~~~~~~~y~iNlIDTPGH 88 (606)
+.-+++++||.-.-|||||.-+|+ |. ++. .+ ...=|+|=..|.+.+ + . .+.|+||||=
T Consensus 81 ~~~~~i~ivG~PNVGKSSlIN~L~---g~--k~~---~v------~~~PG~Tr~~~~i~~-----~-~--~i~liDTPGi 138 (141)
T cd01857 81 KENATIGLVGYPNVGKSSLINALV---GK--KKV---SV------SATPGKTKHFQTIFL-----T-P--TITLCDCPGL 138 (141)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHH---CC--CEE---EE------CCCCCCCCCEEEEEE-----C-C--CEEEEECCCC
T ss_conf 776268997788866999999985---88--668---76------599941576689996-----8-9--9999989886
No 376
>KOG0081 consensus
Probab=95.63 E-value=0.099 Score=31.10 Aligned_cols=158 Identities=23% Similarity=0.352 Sum_probs=85.0
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHCCEEEEEEEEEEEECCC------CCEEEEEEEECCC
Q ss_conf 9998013898778899999982980544443113058677987195052327999974378------8438999961787
Q gi|254780321|r 14 FSIVAHIDHGKSTLADRFIQHCRGLTEREMSSQVLDNMDIERERGITIKAQTVRLNYTSTD------AKDYQLNLIDTPG 87 (606)
Q Consensus 14 ~~IiaHvDhGKTTL~d~lL~~tg~i~~~~~~~~vlD~~~~EreRGITIka~~~~~~~~~~~------~~~y~iNlIDTPG 87 (606)
|-.+|..+-|||++.-+. .-|.+. .|+.-. -||-.+-+ .+.|.... +....+-|.||.|
T Consensus 12 fLaLGDSGVGKTs~Ly~Y--TD~~F~-----~qFIsT------VGIDFreK--rvvY~s~gp~g~gr~~rihLQlWDTAG 76 (219)
T KOG0081 12 FLALGDSGVGKTSFLYQY--TDGKFN-----TQFIST------VGIDFREK--RVVYNSSGPGGGGRGQRIHLQLWDTAG 76 (219)
T ss_pred HHHHCCCCCCCEEEEEEE--CCCCCC-----CEEEEE------EECCCCCC--EEEEECCCCCCCCCCEEEEEEEECCCC
T ss_conf 874046777734789873--278533-----435777------40134400--478834689988752289875200104
Q ss_pred CCHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHH-----CCCCEEEEECCCCCCCCCCCC--HHHHHHHHHHH
Q ss_conf 30027999999973026899998687886558999999997-----099679983267887532113--38887755532
Q gi|254780321|r 88 HVDFTYEVSRSLSACEGSLLVVDATQGVEAQTLANVYQAID-----NNHEIITVLNKADLPSADPDR--VKKQIEETIGI 160 (606)
Q Consensus 88 H~DF~~EV~r~l~a~dgaiLvVdA~~Gvq~QT~~~~~~A~~-----~~l~~I~viNKiD~~~A~~e~--v~~ei~~~~g~ 160 (606)
..-|..-...-.+-+-|-||+.|-+.------..+|.-.++ .+-.++++=||.|+++-+.-. -..++.+.+|+
T Consensus 77 QERFRSLTTAFfRDAMGFlLiFDlT~eqSFLnvrnWlSQL~~hAYcE~PDivlcGNK~DL~~~R~Vs~~qa~~La~kygl 156 (219)
T KOG0081 77 QERFRSLTTAFFRDAMGFLLIFDLTSEQSFLNVRNWLSQLQTHAYCENPDIVLCGNKADLEDQRVVSEDQAAALADKYGL 156 (219)
T ss_pred HHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHCC
T ss_conf 78888889999985011158886253377887998999987740137999899867123166655239999999997399
Q ss_pred HHHHHHHHHHHCCCCCC----HHHHHHHHHHHC
Q ss_conf 23210001110022320----067877632100
Q gi|254780321|r 161 STEDALLVSAKTGEGIP----LLLERIVQQLPS 189 (606)
Q Consensus 161 ~~~~ii~vSAktG~GV~----~LLd~Iv~~iP~ 189 (606)
+ -+..||-||.||+ -|||.|.+++..
T Consensus 157 P---YfETSA~tg~Nv~kave~LldlvM~Rie~ 186 (219)
T KOG0081 157 P---YFETSACTGTNVEKAVELLLDLVMKRIEQ 186 (219)
T ss_pred C---EEEECCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 8---26602455768999999999999999998
No 377
>PRK12289 ribosome-associated GTPase; Reviewed
Probab=95.58 E-value=0.021 Score=35.64 Aligned_cols=56 Identities=11% Similarity=0.057 Sum_probs=28.3
Q ss_pred CCCCCCCCCEEECCCCCEEEEEEECCCCCCCCCEEEEECCCCCCCCCCCCCCCCCEEEEHHC
Q ss_conf 12331012101147572599998169873558458873355642101222335541240101
Q gi|254780321|r 198 APLKALLIDSWYNSYLGVMVLVRIINGQLTKGQSIRLMGTNAKYQVERIGILTPKMIDIEAL 259 (606)
Q Consensus 198 ~Pl~alVfds~~D~~~G~I~~~RV~sG~lk~Gd~I~~~~~g~~~~v~~ig~~~~~~~~v~~l 259 (606)
..+.+.|..+. |---++++-+|....+..+..-..| .++-....++-++.+.++..
T Consensus 7 ~~l~G~Vi~~~-----~~fY~V~~d~~~~~~~~~llC~~Rg-~lrk~~~~v~VGD~V~ve~~ 62 (351)
T PRK12289 7 AQLLGTVVAVQ-----ANFYQVRLDQPPLNPPSLLLCTRRT-RLKKIGQQVMVGDRVVVEEP 62 (351)
T ss_pred CCEEEEEEEEE-----CCEEEEEECCCCCCCCCEEEEEEEE-EECCCCCCCCCCCEEEEEEC
T ss_conf 74389999777-----8679999546766777346678756-64268998765777999641
No 378
>PRK13796 GTP-binding protein YqeH; Provisional
Probab=95.51 E-value=0.033 Score=34.31 Aligned_cols=100 Identities=20% Similarity=0.237 Sum_probs=53.3
Q ss_pred EEEEEEECCCCCHHHHHHHHHHHHCCEEEEEEECCCCC----CHHHHHHH--HHHHHCCCCEEEEECCCCCCCC----CC
Q ss_conf 89999617873002799999997302689999868788----65589999--9999709967998326788753----21
Q gi|254780321|r 78 YQLNLIDTPGHVDFTYEVSRSLSACEGSLLVVDATQGV----EAQTLANV--YQAIDNNHEIITVLNKADLPSA----DP 147 (606)
Q Consensus 78 y~iNlIDTPGH~DF~~EV~r~l~a~dgaiLvVdA~~Gv----q~QT~~~~--~~A~~~~l~~I~viNKiD~~~A----~~ 147 (606)
|.+.+.|-||. |.-++.|.+..-+ .++|+.=.+=. ...-+..| ..+.+.|+++.= +=+.+| ..
T Consensus 77 ~VvDi~Df~gS--~~~~l~~~ig~~~-vilV~NKvDLLP~~~~~~~~~~wv~~~~~~~gl~~~d----V~lvSak~g~gv 149 (367)
T PRK13796 77 NVVDIFDFNGS--WIPGLHRFVGNNP-VLLVGNKADLLPKSVKKNKVKNWLRQEAKELGLRPVD----VVLISAQKGQGI 149 (367)
T ss_pred EEEECCCCCCC--HHHHHHHHHCCCC-EEEEEECHHCCCCCCCHHHHHHHHHHHHHHCCCCCCC----EEEEECCCCCCH
T ss_conf 99974457765--1350898718984-8999982333887678789999999999975998552----899946578899
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q ss_conf 1338887755532232100011100223200678776321
Q gi|254780321|r 148 DRVKKQIEETIGISTEDALLVSAKTGEGIPLLLERIVQQL 187 (606)
Q Consensus 148 e~v~~ei~~~~g~~~~~ii~vSAktG~GV~~LLd~Iv~~i 187 (606)
++..+.|... ....-+++=+.++.|=..|++++++..
T Consensus 150 ~~L~~~i~~~---~~~~dvyvVG~tNvGKSTLiN~ll~~~ 186 (367)
T PRK13796 150 DELLDAIEKY---REGRDVYVVGVTNVGKSTLINRIIKEI 186 (367)
T ss_pred HHHHHHHHHH---CCCCCEEEEECCCCCHHHHHHHHHHHH
T ss_conf 9999999986---379858999157575899999999871
No 379
>pfam01656 CbiA CobQ/CobB/MinD/ParA nucleotide binding domain. This family consists of various cobyrinic acid a,c-diamide synthases. These include CbiA and CbiP from S.typhimurium, and CobQ from R. capsulatus. These amidases catalyse amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria. The family also contains dethiobiotin synthetases as well as the plasmid partitioning proteins of the MinD/ParA family.
Probab=95.51 E-value=0.041 Score=33.64 Aligned_cols=69 Identities=16% Similarity=0.099 Sum_probs=44.9
Q ss_pred CEEEEEEEECCCCCHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEE-EEECCCCCCCCC
Q ss_conf 43899996178730027999999973026899998687886558999999997099679-983267887532
Q gi|254780321|r 76 KDYQLNLIDTPGHVDFTYEVSRSLSACEGSLLVVDATQGVEAQTLANVYQAIDNNHEII-TVLNKADLPSAD 146 (606)
Q Consensus 76 ~~y~iNlIDTPGH~DF~~EV~r~l~a~dgaiLvVdA~~Gvq~QT~~~~~~A~~~~l~~I-~viNKiD~~~A~ 146 (606)
.+|-+-+||||+-.+. .+.+++.++|.+|+++....---.-+........+.+++++ +|+||.|..+.+
T Consensus 111 ~~~D~viiD~pp~~~~--~~~~al~~ad~vivv~~p~~~sl~~~~~l~~~~~~l~~~~~gvV~N~~~~~~~~ 180 (212)
T pfam01656 111 LAYDYVIIDGAPGLGE--LTANALVAADILVVPIEPEGVAVLGAQRLLELVERLGLKILGVVLNKVDRGDER 180 (212)
T ss_pred CCCCEEEEECCCCCCH--HHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHH
T ss_conf 0499899947997559--999999839989999489769999999999999985996229999148899836
No 380
>cd03692 mtIF2_IVc mtIF2_IVc: this family represents the C2 subdomain of domain IV of mitochondrial translation initiation factor 2 (mtIF2) which adopts a beta-barrel fold displaying a high degree of structural similarity with domain II of the translation elongation factor EF-Tu. The C-terminal part of mtIF2 contains the entire fMet-tRNAfmet binding site of IF-2 and is resistant to proteolysis. This C-terminal portion consists of two domains, IF2 C1 and IF2 C2. IF2 C2 been shown to contain all molecular determinants necessary and sufficient for the recognition and binding of fMet-tRNAfMet. Like IF2 from certain prokaryotes such as Thermus thermophilus, mtIF2lacks domain II which is thought to be involved in binding of E.coli IF-2 to 30S subunits.
Probab=95.46 E-value=0.021 Score=35.64 Aligned_cols=75 Identities=17% Similarity=0.325 Sum_probs=56.1
Q ss_pred CEEECCCCCEEEEEEECCCCCCCCCEEEEECCCCCCCCCCCCCCCCCEEEEHHCCCCC-HHHHHHCCCCCCCCCCCCEE
Q ss_conf 1011475725999981698735584588733556421012223355412401012471-23322011002444454200
Q gi|254780321|r 206 DSWYNSYLGVMVLVRIINGQLTKGQSIRLMGTNAKYQVERIGILTPKMIDIEALYPGE-IGVMIASIKEVSHTRVGDTI 283 (606)
Q Consensus 206 ds~~D~~~G~I~~~RV~sG~lk~Gd~I~~~~~g~~~~v~~ig~~~~~~~~v~~l~aGd-VG~ii~gik~l~~~~vGDTl 283 (606)
.++.-.-.|.|+=+||.+|.++++..+++++.++..--.++..+.-.+.+++++..|. .|. .+.+..+.+.||.|
T Consensus 7 ~vF~~~k~~~IAGc~V~~G~i~~~~~vrv~R~~~~i~~G~I~sLk~~K~~V~eV~~G~ECGi---~l~~~~d~~~GD~i 82 (84)
T cd03692 7 AVFKISKVGNIAGCYVTDGKIKRNAKVRVLRNGEVIYEGKISSLKRFKDDVKEVKKGYECGI---TLENFNDIKVGDII 82 (84)
T ss_pred EEEECCCCEEEEEEEEEECEEECCCEEEEEECCEEEEEEEEHHHHHCCCCCCEECCCCEEEE---EECCCCCCCCCCEE
T ss_conf 99998996089899998099972995999989999998366656003435578768818679---95784767779898
No 381
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=95.44 E-value=0.024 Score=35.21 Aligned_cols=66 Identities=24% Similarity=0.276 Sum_probs=44.1
Q ss_pred CCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHCCEEEEEEEEEEEECCCCCEEEEEEEECCCCCHHHHHHHHH
Q ss_conf 13898778899999982980544443113058677987195052327999974378843899996178730027999999
Q gi|254780321|r 19 HIDHGKSTLADRFIQHCRGLTEREMSSQVLDNMDIERERGITIKAQTVRLNYTSTDAKDYQLNLIDTPGHVDFTYEVSRS 98 (606)
Q Consensus 19 HvDhGKTTL~d~lL~~tg~i~~~~~~~~vlD~~~~EreRGITIka~~~~~~~~~~~~~~y~iNlIDTPGH~DF~~EV~r~ 98 (606)
-.+.||||++-.|-.. ..+++..--+.|..+. |-+=+||||++.+ .+...+
T Consensus 8 KGGvGKtt~~~~la~~---~a~~g~~vl~iD~DpQ------------------------yD~iiIDtpp~~~--~~~~~a 58 (104)
T cd02042 8 KGGVGKTTTAVNLAAA---LARRGKRVLLIDLDPQ------------------------YDYIIIDTPPSLG--LLTRNA 58 (104)
T ss_pred CCCCCHHHHHHHHHHH---HHHCCCEEEEEECCCC------------------------CCEEEEECCCCCC--HHHHHH
T ss_conf 9987689999999999---9977992999977988------------------------8889997949998--999999
Q ss_pred HHHCCEEEEEEECCC
Q ss_conf 973026899998687
Q gi|254780321|r 99 LSACEGSLLVVDATQ 113 (606)
Q Consensus 99 l~a~dgaiLvVdA~~ 113 (606)
+.++|.+|+.+....
T Consensus 59 l~~aD~viiP~~p~~ 73 (104)
T cd02042 59 LAAADLVLIPVQPSP 73 (104)
T ss_pred HHHCCEEEEECCCCH
T ss_conf 997899999836988
No 382
>PRK13760 putative RNA-associated protein; Provisional
Probab=95.34 E-value=0.07 Score=32.11 Aligned_cols=64 Identities=25% Similarity=0.358 Sum_probs=54.3
Q ss_pred EEEEEEECCCCCHHHHHHHHHHHHEEECCCCC-CCEEEEEEEECHHHHHHHHHHHHHHHCCCEEEEE
Q ss_conf 99999808310003899988630014244336-8369999996043332204687676357418889
Q gi|254780321|r 413 IQVTIITPNEYLGSILKLCQERRGIQIDMSHL-DNRAMIVYELPLNEVIFDFYDRLKSVSKGYASFD 478 (606)
Q Consensus 413 ~~~~I~~P~ey~G~Vm~~l~~RRG~~~~m~~~-~~~~~i~~~vPl~Eli~~f~~~LkS~T~G~as~~ 478 (606)
+++.|.+|.+|.|...+.+.. =|.+..-++. +|......++|-.-- .+|++.|.++|+|.|...
T Consensus 164 ~~l~v~iP~~~a~~a~~~l~~-~g~v~kEeW~~dGs~~~vv~ipaG~~-~~~~~~l~~~TkG~~~~k 228 (233)
T PRK13760 164 ARIAVKIPGEYAGKAYGELAK-FGEIKKEEWQSDGSWVAVLEIPAGLQ-DEFYDKLNKLTKGEAETK 228 (233)
T ss_pred EEEEEEECHHHHHHHHHHHHH-HCCCCCEECCCCCCEEEEEEECCCCH-HHHHHHHHHHCCCCEEEE
T ss_conf 799999678998899999997-47201010158984899999897548-999999987568834799
No 383
>COG1161 Predicted GTPases [General function prediction only]
Probab=95.31 E-value=0.038 Score=33.93 Aligned_cols=98 Identities=22% Similarity=0.255 Sum_probs=65.1
Q ss_pred EEECCCCCH-HHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 961787300-2799999997302689999868788655899999999709967998326788753211338887755532
Q gi|254780321|r 82 LIDTPGHVD-FTYEVSRSLSACEGSLLVVDATQGVEAQTLANVYQAIDNNHEIITVLNKADLPSADPDRVKKQIEETIGI 160 (606)
Q Consensus 82 lIDTPGH~D-F~~EV~r~l~a~dgaiLvVdA~~Gvq~QT~~~~~~A~~~~l~~I~viNKiD~~~A~~e~v~~ei~~~~g~ 160 (606)
+-+-|||.+ |.-++.+-+..+|.++-|+||..-.-......-... .+-+.+.++||.|+-... +..+-.+.+.-
T Consensus 14 i~~~~g~~~k~~~~~~~~~~~~d~vvevvDar~P~~s~~~~l~~~v--~~k~~i~vlNK~DL~~~~---~~~~W~~~~~~ 88 (322)
T COG1161 14 IQWFPGHMKKAKRQLKEVLKSVDVVVEVVDARDPLGTRNPELERIV--KEKPKLLVLNKADLAPKE---VTKKWKKYFKK 88 (322)
T ss_pred CCCCCCCHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCHHHHH--CCCCCEEEEEHHHCCCHH---HHHHHHHHHHH
T ss_conf 2556775199999998753667658997431268888873067885--578835998513248999---99999999986
Q ss_pred H-HHHHHHHHHHCCCCCCHHHHHHH
Q ss_conf 2-32100011100223200678776
Q gi|254780321|r 161 S-TEDALLVSAKTGEGIPLLLERIV 184 (606)
Q Consensus 161 ~-~~~ii~vSAktG~GV~~LLd~Iv 184 (606)
. ....+++|++++.+...+..++-
T Consensus 89 ~~~~~~~~v~~~~~~~~~~i~~~~~ 113 (322)
T COG1161 89 EEGIKPIFVSAKSRQGGKKIRKALE 113 (322)
T ss_pred CCCCCCEEEECCCCCCCCCCHHHHH
T ss_conf 4798655764334677654258888
No 384
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=95.24 E-value=0.017 Score=36.19 Aligned_cols=103 Identities=12% Similarity=0.135 Sum_probs=46.9
Q ss_pred EEEEEEECCCCCHHHHHHHHHHHHCCEEEEEEECCCCCCHHH----HHHHHHHH---HCCCCE--EEEECCCCCCCCCCC
Q ss_conf 899996178730027999999973026899998687886558----99999999---709967--998326788753211
Q gi|254780321|r 78 YQLNLIDTPGHVDFTYEVSRSLSACEGSLLVVDATQGVEAQT----LANVYQAI---DNNHEI--ITVLNKADLPSADPD 148 (606)
Q Consensus 78 y~iNlIDTPGH~DF~~EV~r~l~a~dgaiLvVdA~~Gvq~QT----~~~~~~A~---~~~l~~--I~viNKiD~~~A~~e 148 (606)
|.+-+.|-||.. .-++.+.+.. --.++|+.=.+=+-..+ +..|.... ..++++ |.++-- .-+...+
T Consensus 40 ~VvDi~Df~~S~--~~~l~~~~~~-~~v~lV~NK~DLLp~~~~~~~~~~~~~~~~~~~~~~~~~~v~lvSa--~~~~gi~ 114 (190)
T cd01855 40 HVVDIFDFPGSL--IPRLRLFGGN-NPVILVGNKIDLLPKDKNLVRIKNWLRAKAAAGLGLKPKDVILISA--KKGWGVE 114 (190)
T ss_pred EEEECCCCCCCC--CHHHHHHCCC-CCEEEEEEHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEC--CCCCCHH
T ss_conf 997543576444--6557986179-8689999815517887658888989999975015998431799766--5786989
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q ss_conf 338887755532232100011100223200678776321
Q gi|254780321|r 149 RVKKQIEETIGISTEDALLVSAKTGEGIPLLLERIVQQL 187 (606)
Q Consensus 149 ~v~~ei~~~~g~~~~~ii~vSAktG~GV~~LLd~Iv~~i 187 (606)
...+.|.+..+ ...-+++-+.++.|=..|++++....
T Consensus 115 ~L~~~i~~~~~--~~~~vyvvG~~NvGKSTLiN~Ll~~~ 151 (190)
T cd01855 115 ELINAIKKLAK--KGGDVYVVGATNVGKSTLINALLKKD 151 (190)
T ss_pred HHHHHHHHHHC--CCCCEEEECCCCCCHHHHHHHHHHHC
T ss_conf 99999999746--69857998058754679999986302
No 385
>KOG1954 consensus
Probab=95.16 E-value=0.22 Score=28.84 Aligned_cols=128 Identities=20% Similarity=0.207 Sum_probs=71.1
Q ss_pred EEEEECCCCCCHHHHHHHHHHHC--CCCCCCC----CCCEEECCCHHHHHHCCEEEEEEEE--EEEECC-----------
Q ss_conf 79998013898778899999982--9805444----4311305867798719505232799--997437-----------
Q gi|254780321|r 13 NFSIVAHIDHGKSTLADRFIQHC--RGLTERE----MSSQVLDNMDIERERGITIKAQTVR--LNYTST----------- 73 (606)
Q Consensus 13 N~~IiaHvDhGKTTL~d~lL~~t--g~i~~~~----~~~~vlD~~~~EreRGITIka~~~~--~~~~~~----------- 73 (606)
=+-++|.-..||||..-.||+.. |.-...+ .-.-+|-..+++---|-+. ++. ..|...
T Consensus 60 mill~GqyStGKTtfi~yLle~dypg~riGpEPTtd~Fi~vM~G~~e~~ipGnal---~vd~~~pF~gL~~FG~aflnRf 136 (532)
T KOG1954 60 MILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTTDRFIAVMHGDEEGSIPGNAL---VVDAKKPFRGLNKFGNAFLNRF 136 (532)
T ss_pred EEEEEECCCCCHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCEE---EECCCCCHHHHHHHHHHHHHHH
T ss_conf 4899724666603999998717787554689997530689985586566678625---6468775165666679999988
Q ss_pred ------CCCEEEEEEEECCCC-----------CHHHHHHHHHHHHCCEEEEEEECCC-CCCHHHHHHHHHHHHCCCCEEE
Q ss_conf ------884389999617873-----------0027999999973026899998687-8865589999999970996799
Q gi|254780321|r 74 ------DAKDYQLNLIDTPGH-----------VDFTYEVSRSLSACEGSLLVVDATQ-GVEAQTLANVYQAIDNNHEIIT 135 (606)
Q Consensus 74 ------~~~~y~iNlIDTPGH-----------~DF~~EV~r~l~a~dgaiLvVdA~~-Gvq~QT~~~~~~A~~~~l~~I~ 135 (606)
+----.+|+|||||- -||.+-.+--..-||-.+||.||.. -|-..+.+++..-.-+.=++-+
T Consensus 137 ~csqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf~~vi~aLkG~EdkiRV 216 (532)
T KOG1954 137 MCSQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFKRVIDALKGHEDKIRV 216 (532)
T ss_pred HHHCCCHHHHHHEEEECCCCCCCCCHHCCCCCCCHHHHHHHHHHHCCEEEEEECHHHCCCCHHHHHHHHHHHCCCCEEEE
T ss_conf 77338756550044423675320122201236780889999997456899972466456667899999986188640688
Q ss_pred EECCCCCC
Q ss_conf 83267887
Q gi|254780321|r 136 VLNKADLP 143 (606)
Q Consensus 136 viNKiD~~ 143 (606)
|+||-|..
T Consensus 217 VLNKADqV 224 (532)
T KOG1954 217 VLNKADQV 224 (532)
T ss_pred EECCCCCC
T ss_conf 83032443
No 386
>PRK00131 aroK shikimate kinase; Reviewed
Probab=95.13 E-value=0.086 Score=31.52 Aligned_cols=145 Identities=17% Similarity=0.234 Sum_probs=71.4
Q ss_pred HHCEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCH-HHHHHCCEEEEEEEEEEEECCCCCEEEEEEEECCC
Q ss_conf 25317999801389877889999998298054444311305867-79871950523279999743788438999961787
Q gi|254780321|r 9 SRIRNFSIVAHIDHGKSTLADRFIQHCRGLTEREMSSQVLDNMD-IERERGITIKAQTVRLNYTSTDAKDYQLNLIDTPG 87 (606)
Q Consensus 9 ~~IRN~~IiaHvDhGKTTL~d~lL~~tg~i~~~~~~~~vlD~~~-~EreRGITIka~~~~~~~~~~~~~~y~iNlIDTPG 87 (606)
-+=|||.+||.-++||||+.-.|-...|. .+.|.+. +|+.-|.||.. +.+.=|
T Consensus 2 ~~~~nI~liG~~GsGKTtvgk~LA~~L~~--------~fiD~D~~Ie~~~g~si~~------------------if~~~G 55 (175)
T PRK00131 2 LKGPNIVLIGMMGAGKSTIGRLLAKRLGY--------EFIDTDHLIEARAGKSIPE------------------IFEEEG 55 (175)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHCC--------CCCCCCHHHHHHHCCCHHH------------------HHHHHC
T ss_conf 99980898889999989999999999596--------9023988999761699999------------------999858
Q ss_pred CCHHHH---HHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEC------------CCCCCCCCCCCHHH
Q ss_conf 300279---999999730268999986878865589999999970996799832------------67887532113388
Q gi|254780321|r 88 HVDFTY---EVSRSLSACEGSLLVVDATQGVEAQTLANVYQAIDNNHEIITVLN------------KADLPSADPDRVKK 152 (606)
Q Consensus 88 H~DF~~---EV~r~l~a~dgaiLvVdA~~Gvq~QT~~~~~~A~~~~l~~I~viN------------KiD~~~A~~e~v~~ 152 (606)
-.-|-. ++-+.+...+.. ||+ +.|-.+....++......+. +++++ .-+||-.......+
T Consensus 56 e~~FR~~E~~~l~~l~~~~~~--VIs-tGGG~v~~~~~~~~L~~~g~--vV~L~~~~e~l~~Rl~~~~~RPll~~~~~~~ 130 (175)
T PRK00131 56 EAGFRELEEEVLAELLQRHNL--VIS-TGGGAVLREENRALLRERGT--VVYLDASFEELLRRLARDRNRPLLQTEDPKE 130 (175)
T ss_pred HHHHHHHHHHHHHHHCCCCCE--EEE-CCCCCCCCHHHHHHHHCCCC--EEEEECCHHHHHHHHCCCCCCCCCCCCCHHH
T ss_conf 899999999999965147985--997-48982268899999981693--7998579999999864899998788998699
Q ss_pred HHHHHHH----HHH--HH-HHHHHHHCCCCCCHHHHHHHHHH
Q ss_conf 8775553----223--21-00011100223200678776321
Q gi|254780321|r 153 QIEETIG----IST--ED-ALLVSAKTGEGIPLLLERIVQQL 187 (606)
Q Consensus 153 ei~~~~g----~~~--~~-ii~vSAktG~GV~~LLd~Iv~~i 187 (606)
++++++. +.. .+ ++-+ ++..++++.+.|++.+
T Consensus 131 ~l~~l~~~R~~~Y~~~Ad~~Idt---~~~s~~ei~~~Ii~~L 169 (175)
T PRK00131 131 KLRALYEERDPLYEEVADLTIET---DRRSPEEVVNEILELL 169 (175)
T ss_pred HHHHHHHHHHHHHHHHCCEEEEC---CCCCHHHHHHHHHHHH
T ss_conf 99999999999897538999989---9999999999999999
No 387
>cd03702 IF2_mtIF2_II This family represents the domain II of bacterial Initiation Factor 2 (IF2) and its eukaryotic mitochondrial homologue mtIF2. IF2, the largest initiation factor is an essential GTP binding protein. In E. coli three natural forms of IF2 exist in the cell, IF2alpha, IF2beta1, and IF2beta2. Bacterial IF-2 is structurally and functionally related to eukaryotic mitochondrial mtIF-2.
Probab=95.13 E-value=0.035 Score=34.11 Aligned_cols=80 Identities=20% Similarity=0.201 Sum_probs=54.1
Q ss_pred CCCCCCEEECCCCCEEEEEEECCCCCCCCCEEEEECCCCCCCCCCCCCCCCCEEEEHHCCCCCHHHHHHCCCCCCCCCCC
Q ss_conf 31012101147572599998169873558458873355642101222335541240101247123322011002444454
Q gi|254780321|r 201 KALLIDSWYNSYLGVMVLVRIINGQLTKGQSIRLMGTNAKYQVERIGILTPKMIDIEALYPGEIGVMIASIKEVSHTRVG 280 (606)
Q Consensus 201 ~alVfds~~D~~~G~I~~~RV~sG~lk~Gd~I~~~~~g~~~~v~~ig~~~~~~~~v~~l~aGdVG~ii~gik~l~~~~vG 280 (606)
++.|..+..|+.+|.++++-|.+|+|++||-+..-.+- .++..+ +.....+++++.+|+.-. |.|++++- ..|
T Consensus 2 ~g~VlEs~~d~~~G~vatviV~~GtL~~Gd~~v~G~~~--gkVr~l--~d~~g~~v~~A~Ps~pV~-I~G~~~~P--~aG 74 (95)
T cd03702 2 EGVVIESKLDKGRGPVATVLVQNGTLKVGDVLVAGTTY--GKVRAM--FDENGKRVKEAGPSTPVE-ILGLKGVP--QAG 74 (95)
T ss_pred EEEEEEEEECCCCCCEEEEEEECCEEECCCEEEECCEE--EEEEEE--ECCCCCCCCEECCCCCEE-EECCCCCC--CCC
T ss_conf 49999999769988479999915802069898878638--899999--999999998886998599-95789999--999
Q ss_pred CEECCCC
Q ss_conf 2000466
Q gi|254780321|r 281 DTITDDS 287 (606)
Q Consensus 281 DTl~~~~ 287 (606)
|-+...+
T Consensus 75 d~~~~v~ 81 (95)
T cd03702 75 DKFLVVE 81 (95)
T ss_pred CEEEEEC
T ss_conf 9899959
No 388
>TIGR00491 aIF-2 translation initiation factor aIF-2; InterPro: IPR004544 Initiation factor 2 (IF-2) is one of the three factors required for the initiation of protein biosynthesis in bacteria. IF-2 promotes the GTP-dependent binding of the initiator tRNA to the small subunit of the ribosome. IF-2 is a protein of about 70 to 95 Kd which contains a central GTP-binding domain flanked by a highly variable N-terminal domain and a more conserved C-terminal domain. Some members of this family undergo protein self splicing that involves a post-translational excision of the intein followed by peptide ligation.; GO: 0003743 translation initiation factor activity, 0005525 GTP binding, 0006413 translational initiation, 0005622 intracellular.
Probab=95.05 E-value=0.02 Score=35.81 Aligned_cols=52 Identities=10% Similarity=0.071 Sum_probs=27.7
Q ss_pred HHCCEEEEEEEECCCCCHHHHHHHHHHHHEEECCCCC-----CCEEEEEEEECHHHH
Q ss_conf 6232699999808310003899988630014244336-----836999999604333
Q gi|254780321|r 408 LREPWIQVTIITPNEYLGSILKLCQERRGIQIDMSHL-----DNRAMIVYELPLNEV 459 (606)
Q Consensus 408 i~EPi~~~~I~~P~ey~G~Vm~~l~~RRG~~~~m~~~-----~~~~~i~~~vPl~El 459 (606)
++|-+.+=+.-+-..---.+-.+...+-=...|-+.. .+-++-.+-||-|-+
T Consensus 691 fl~~~~kq~~~~~~~l~~~~y~lv~~kPL~e~GF~AerFdRv~Dft~tVaviPvSA~ 747 (1145)
T TIGR00491 691 FLESYEKQEQRVKQNLDKKVYNLVIKKPLAEEGFEAERFDRVRDFTRTVAVIPVSAV 747 (1145)
T ss_pred HHHHHHHCCHHHHHHHHHHHHHHHHCCCHHHCCCCCCCCCCEECEEEEEEEEEEECC
T ss_conf 666654111678866887789887302211258871225520000113689886656
No 389
>KOG0448 consensus
Probab=95.02 E-value=0.3 Score=27.86 Aligned_cols=155 Identities=23% Similarity=0.334 Sum_probs=81.0
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCC--------------CCCCEEE--CCCHHHH----HHCC----------EEE
Q ss_conf 79998013898778899999982980544--------------4431130--5867798----7195----------052
Q gi|254780321|r 13 NFSIVAHIDHGKSTLADRFIQHCRGLTER--------------EMSSQVL--DNMDIER----ERGI----------TIK 62 (606)
Q Consensus 13 N~~IiaHvDhGKTTL~d~lL~~tg~i~~~--------------~~~~~vl--D~~~~Er----eRGI----------TIk 62 (606)
-++|.|-.-+||||+.-+||... .+..+ ++.+-++ |..+ |+ -++- +=.
T Consensus 111 KV~ifGrts~GKSt~iNAmL~~k-lLP~g~gh~TncF~~VegadG~e~vl~~~~s~-ek~d~~ti~~~~haL~~~~~~~~ 188 (749)
T KOG0448 111 KVAIFGRTSAGKSTVINAMLHKK-LLPSGIGHTTNCFLEVEGADGAEAVLATEGSE-EKIDMKTINQLAHALKPDKDLGA 188 (749)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH-CCCCCCCCCCEEEEEECCCCCCCEEECCCCCC-CCCCHHHHHHHHHHCCCCCCCCC
T ss_conf 79995787776899999999872-07666655312346631467731155168873-43218887777875173300376
Q ss_pred EEEEEEEEECCC---CCEEEEEEEECCCCCHHHHHHHHHH-H---HCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEE-
Q ss_conf 327999974378---8438999961787300279999999-7---3026899998687886558999999997099679-
Q gi|254780321|r 63 AQTVRLNYTSTD---AKDYQLNLIDTPGHVDFTYEVSRSL-S---ACEGSLLVVDATQGVEAQTLANVYQAIDNNHEII- 134 (606)
Q Consensus 63 a~~~~~~~~~~~---~~~y~iNlIDTPGH~DF~~EV~r~l-~---a~dgaiLvVdA~~Gvq~QT~~~~~~A~~~~l~~I- 134 (606)
..-+.+.|.... -++ -+-+||.||- |-+.|-.... + -+|-.++|++|-. -..|+..+|..--..+-|-|
T Consensus 189 ~sLlrV~~p~~~csLLrn-DivliDsPGl-d~~se~tswid~~cldaDVfVlV~NaEn-tlt~sek~Ff~~vs~~KpniF 265 (749)
T KOG0448 189 GSLLRVFWPDDKCSLLRN-DIVLIDSPGL-DVDSELTSWIDSFCLDADVFVLVVNAEN-TLTLSEKQFFHKVSEEKPNIF 265 (749)
T ss_pred CEEEEEEECCCCCHHHHC-CCEEECCCCC-CCCHHHHHHHHHHHHCCCEEEEEECCCC-HHHHHHHHHHHHHHCCCCCEE
T ss_conf 506899942863213305-5012058888-8860245999976440775899961763-868989999998540488479
Q ss_pred EEECCCCCCCCCC---CCHHHHHHHHHH---HH-HHHHHHHHHHC
Q ss_conf 9832678875321---133888775553---22-32100011100
Q gi|254780321|r 135 TVLNKADLPSADP---DRVKKQIEETIG---IS-TEDALLVSAKT 172 (606)
Q Consensus 135 ~viNKiD~~~A~~---e~v~~ei~~~~g---~~-~~~ii~vSAkt 172 (606)
++.||-|.-.+.+ |.|+.||.++=- -+ .+-+.+|||+.
T Consensus 266 IlnnkwDasase~ec~e~V~~Qi~eL~v~~~~eA~DrvfFVS~~e 310 (749)
T KOG0448 266 ILNNKWDASASEPECKEDVLKQIHELSVVTEKEAADRVFFVSAKE 310 (749)
T ss_pred EEECHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHCCEEEEEECCC
T ss_conf 996401220263778999999887517433666367369984531
No 390
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=94.92 E-value=0.26 Score=28.24 Aligned_cols=24 Identities=25% Similarity=0.169 Sum_probs=20.1
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCC
Q ss_conf 999801389877889999998298
Q gi|254780321|r 14 FSIVAHIDHGKSTLADRFIQHCRG 37 (606)
Q Consensus 14 ~~IiaHvDhGKTTL~d~lL~~tg~ 37 (606)
+||+|.-++|||||.+.++...|.
T Consensus 25 taIvGpsGsGKSTLl~~i~~~lg~ 48 (197)
T cd03278 25 TAIVGPNGSGKSNIIDAIRWVLGE 48 (197)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCC
T ss_conf 899999999889999999987477
No 391
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=94.67 E-value=0.23 Score=28.59 Aligned_cols=129 Identities=16% Similarity=0.210 Sum_probs=61.8
Q ss_pred CHHHCEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCC---HHHHHH------CCEEEEEE--E-----EEEE
Q ss_conf 852531799980138987788999999829805444431130586---779871------95052327--9-----9997
Q gi|254780321|r 7 PLSRIRNFSIVAHIDHGKSTLADRFIQHCRGLTEREMSSQVLDNM---DIERER------GITIKAQT--V-----RLNY 70 (606)
Q Consensus 7 p~~~IRN~~IiaHvDhGKTTL~d~lL~~tg~i~~~~~~~~vlD~~---~~EreR------GITIka~~--~-----~~~~ 70 (606)
+..+...|.++|--+.||||.+-.|-+....-..+ ..=--+|.. ..|+=+ |+.+.... . ...+
T Consensus 71 ~~~~~~vI~lvG~~G~GKTTT~AKLA~~~~~~~~k-V~lia~DtyR~aA~eQLk~~a~~l~v~~~~~~~~~~~~~~~~~~ 149 (270)
T PRK06731 71 FEKEVQTIALIGPTGVGKTTTLAKMAWQFHGKKKT-VGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYF 149 (270)
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCE-EEEEEECCCCHHHHHHHHHHHHHHCCCEECCCCHHHHHHHHHHH
T ss_conf 67998189998889898899999999999867990-89998388888899999999998199535458878999999999
Q ss_pred ECCCCCEEEEEEEECCCC--CH--HHHHHHHHHHHC--CEEEEEEECCCCCCH--HHHHHHHHHHHCCCCEEEEECCCCC
Q ss_conf 437884389999617873--00--279999999730--268999986878865--5899999999709967998326788
Q gi|254780321|r 71 TSTDAKDYQLNLIDTPGH--VD--FTYEVSRSLSAC--EGSLLVVDATQGVEA--QTLANVYQAIDNNHEIITVLNKADL 142 (606)
Q Consensus 71 ~~~~~~~y~iNlIDTPGH--~D--F~~EV~r~l~a~--dgaiLvVdA~~Gvq~--QT~~~~~~A~~~~l~~I~viNKiD~ 142 (606)
. +-..|.+=||||.|. .| -..|..+.+.++ +-.+||+||+.|-+. |+...| . ..++.- ++++|+|-
T Consensus 150 ~--~~~~~DvilIDTAGR~~~d~~lm~el~~~~~~~~p~~~~Lvldas~~~~~~~~~~~~f-~--~~~i~g-vIlTKlD~ 223 (270)
T PRK06731 150 K--EEARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSKDMIEIITNF-K--DIHIDG-IVFTKFDE 223 (270)
T ss_pred H--HHCCCCEEEEECCCCCCCCHHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHHH-C--CCCCCE-EEEECCCC
T ss_conf 9--9769999999799987146999999999860638987999986877769999999980-7--799988-99965358
No 392
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=94.51 E-value=0.17 Score=29.55 Aligned_cols=117 Identities=22% Similarity=0.206 Sum_probs=55.8
Q ss_pred CCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCH----HH-HHHCCEEEEEEEEEEEECCCCCEEEEEEEECC-CCCHH
Q ss_conf 01389877889999998298054444311305867----79-87195052327999974378843899996178-73002
Q gi|254780321|r 18 AHIDHGKSTLADRFIQHCRGLTEREMSSQVLDNMD----IE-RERGITIKAQTVRLNYTSTDAKDYQLNLIDTP-GHVDF 91 (606)
Q Consensus 18 aHvDhGKTTL~d~lL~~tg~i~~~~~~~~vlD~~~----~E-reRGITIka~~~~~~~~~~~~~~y~iNlIDTP-GH~DF 91 (606)
|-.+-||||++-.|-. .+.+++.+--++|-.= +. -=||-- +++...-.+...+|.++-+=+|||| |--|=
T Consensus 7 ~kggvgkst~~~~la~---~l~~~g~~v~~~d~di~gpsip~~~rGp~-~~~~i~q~l~~~~w~~lDyLIID~PPGtgD~ 82 (169)
T cd02037 7 GKGGVGKSTVAVNLAL---ALAKLGYKVGLLDADIYGPSIPKMWRGPM-KMGAIKQFLTDVDWGELDYLVIDMPPGTGDE 82 (169)
T ss_pred CCCCCCHHHHHHHHHH---HHHHCCCCEEEEEEECCCCCCCEEEECHH-HHHHHHHHHHHCCCCCCCEEEEECCCCCCHH
T ss_conf 9998819999999999---99987997899971379997550120473-8999999998525466788999689998707
Q ss_pred HHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEE-CC
Q ss_conf 7999999973026899998687886558999999997099679983-26
Q gi|254780321|r 92 TYEVSRSLSACEGSLLVVDATQGVEAQTLANVYQAIDNNHEIITVL-NK 139 (606)
Q Consensus 92 ~~EV~r~l~a~dgaiLvVdA~~Gvq~QT~~~~~~A~~~~l~~I~vi-NK 139 (606)
..-+... ..+|++|+|.--..--..-.+....++.+.+++++-+| |-
T Consensus 83 ~lt~~~~-~~~d~~IvVTTP~~~s~~Da~r~i~~~~~~~i~i~GvVeNM 130 (169)
T cd02037 83 HLTLAQS-LPIDGAVIVTTPQEVALDDVRKAIDMFKKVNIPILGVVENM 130 (169)
T ss_pred HHHHHHH-CCCCCEEEEECCCHHHHHHHHHHHHHHHHCCCCEEEEEECC
T ss_conf 7879875-05674799946958899999999999997599707999879
No 393
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=94.51 E-value=0.4 Score=27.03 Aligned_cols=123 Identities=23% Similarity=0.278 Sum_probs=57.7
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCCCCCCC-EEECCC---HHHHHH------CCEEEEEEEEEEEE--------CCCC
Q ss_conf 99980138987788999999829805444431-130586---779871------95052327999974--------3788
Q gi|254780321|r 14 FSIVAHIDHGKSTLADRFIQHCRGLTEREMSS-QVLDNM---DIERER------GITIKAQTVRLNYT--------STDA 75 (606)
Q Consensus 14 ~~IiaHvDhGKTTL~d~lL~~tg~i~~~~~~~-~vlD~~---~~EreR------GITIka~~~~~~~~--------~~~~ 75 (606)
|+++|--+.||||.+-.|-...- .++.... =-+|+. ..|+=| |+.+......-... ....
T Consensus 3 i~lvGptGvGKTTTiaKLA~~~~--~~~~kV~lit~Dt~R~gA~eQL~~~a~~l~v~~~~~~~~~~~~~~~~~~~~~~~~ 80 (173)
T cd03115 3 ILLVGLQGVGKTTTAAKLALYLK--KKGKKVLLVAADTYRPAAIEQLRVLGEQVGVPVFEEGEGKDPVSIAKRAIEHARE 80 (173)
T ss_pred EEEECCCCCCHHHHHHHHHHHHH--HCCCEEEEEECCCCCHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 99989999988999999999999--7699289997488757799999999997498599227755879999999999875
Q ss_pred CEEEEEEEECCC--CCHHH--HHHHHHHHH--CCEEEEEEECCCCCCHHHHHHHHHHHH--CCCCEEEEECCCCC
Q ss_conf 438999961787--30027--999999973--026899998687886558999999997--09967998326788
Q gi|254780321|r 76 KDYQLNLIDTPG--HVDFT--YEVSRSLSA--CEGSLLVVDATQGVEAQTLANVYQAID--NNHEIITVLNKADL 142 (606)
Q Consensus 76 ~~y~iNlIDTPG--H~DF~--~EV~r~l~a--~dgaiLvVdA~~Gvq~QT~~~~~~A~~--~~l~~I~viNKiD~ 142 (606)
++|-+=|||||| |.|.. .|...-+.+ .+-.+||+||..|-++. ..-.++. .++.- ++++|+|-
T Consensus 81 ~~~D~IlIDTaGr~~~d~~~~~el~~l~~~~~p~~~~LVl~a~~~~~~~---~~~~~f~~~~~~~~-~I~TKlDe 151 (173)
T cd03115 81 ENFDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTGQDAV---NQAKAFNEALGITG-VILTKLDG 151 (173)
T ss_pred CCCCEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCEEECCCCCHHHHH---HHHHHHHHCCCCCE-EEEEEECC
T ss_conf 6899899978887879999999999998644897215742465506589---99999874279978-99971438
No 394
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=94.45 E-value=0.069 Score=32.14 Aligned_cols=61 Identities=23% Similarity=0.339 Sum_probs=36.5
Q ss_pred EEEECCCCCCHHHHHHHHHHH-CCCCCCCCCCCEEECCCHHHHHHCCEEEEEEEEEEEECCCCCEEEEEE
Q ss_conf 999801389877889999998-298054444311305867798719505232799997437884389999
Q gi|254780321|r 14 FSIVAHIDHGKSTLADRFIQH-CRGLTEREMSSQVLDNMDIERERGITIKAQTVRLNYTSTDAKDYQLNL 82 (606)
Q Consensus 14 ~~IiaHvDhGKTTL~d~lL~~-tg~i~~~~~~~~vlD~~~~EreRGITIka~~~~~~~~~~~~~~y~iNl 82 (606)
|+|+|.-++|||||.|++.+. .|...... . ..+++.-+ +|-. ...|.+.|. .+|+.|.+.-
T Consensus 28 ~lI~G~nGsGKSSIldAI~~ALyG~~~~~~-~---~~~~~~i~-~g~~--~~~V~l~F~-~~g~~Y~i~R 89 (908)
T COG0419 28 FLIVGPNGAGKSSILDAITFALYGKTPRLG-A---FSLDDLIR-AGEK--SASVELEFE-VNGKKYRIER 89 (908)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCCCCCCC-C---CCHHHHHH-CCCC--CEEEEEEEE-ECCEEEEEEE
T ss_conf 799899999788999999999828987754-4---01558986-5886--079999999-8997999999
No 395
>TIGR03371 cellulose_yhjQ cellulose synthase operon protein YhjQ. Members of this family are the YhjQ protein, found immediately upsteam of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae. In several species it is seen clearly as part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm (PMID:16930487), based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=94.43 E-value=0.11 Score=30.77 Aligned_cols=80 Identities=20% Similarity=0.185 Sum_probs=45.7
Q ss_pred EEEEEEECCCCCHHHHHHHHHHHHCCEEEEEEECCCCC-C--HHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCHHHHH
Q ss_conf 89999617873002799999997302689999868788-6--55899999999709967998326788753211338887
Q gi|254780321|r 78 YQLNLIDTPGHVDFTYEVSRSLSACEGSLLVVDATQGV-E--AQTLANVYQAIDNNHEIITVLNKADLPSADPDRVKKQI 154 (606)
Q Consensus 78 y~iNlIDTPGH~DF~~EV~r~l~a~dgaiLvVdA~~Gv-q--~QT~~~~~~A~~~~l~~I~viNKiD~~~A~~e~v~~ei 154 (606)
|-+-|||||.-.++ -...+|.++|.+|+++.+..-- . .|....+.........+-+++|+.|.......++.+++
T Consensus 115 ~D~viiD~pp~l~~--~~~~al~aad~vlipv~~~~~s~~~~~~~~~~~~~~~~~~~~~~iv~n~~~~~~~~~~~~~~~l 192 (246)
T TIGR03371 115 RDWVLIDLPRGPSP--ITDQALAAADLVLVVVNADAACYATLHQLALALLARSVPPDGIHYLINQFQPARQLSRDVRAVL 192 (246)
T ss_pred CCEEEEECCCCCCH--HHHHHHHHCCEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 98899948998749--9999999889479981899899999999999999842776751788630264015899999999
Q ss_pred HHHHH
Q ss_conf 75553
Q gi|254780321|r 155 EETIG 159 (606)
Q Consensus 155 ~~~~g 159 (606)
++.++
T Consensus 193 ~~~~~ 197 (246)
T TIGR03371 193 RATLG 197 (246)
T ss_pred HHHCC
T ss_conf 99749
No 396
>PRK13948 shikimate kinase; Provisional
Probab=94.27 E-value=0.43 Score=26.79 Aligned_cols=154 Identities=16% Similarity=0.169 Sum_probs=79.9
Q ss_pred CCCCCCCHHHCEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCH-HHHHHCCEEEEEEEEEEEECCCCCEEE
Q ss_conf 9888998525317999801389877889999998298054444311305867-798719505232799997437884389
Q gi|254780321|r 1 MQKKPTPLSRIRNFSIVAHIDHGKSTLADRFIQHCRGLTEREMSSQVLDNMD-IERERGITIKAQTVRLNYTSTDAKDYQ 79 (606)
Q Consensus 1 ~~~~~~p~~~IRN~~IiaHvDhGKTTL~d~lL~~tg~i~~~~~~~~vlD~~~-~EreRGITIka~~~~~~~~~~~~~~y~ 79 (606)
|.+...| ..-.||.+||.-++||||+.-.|-...| -.+.|.++ +|+.-|.|| +-
T Consensus 1 ~~~~~~p-~~~~~IvLIG~mGsGKStiGk~LA~~l~--------~~fiD~D~~Ie~~~g~sI-----~e----------- 55 (182)
T PRK13948 1 MARLEVP-RPATFVALAGFMGTGKSRIGWELSRALA--------LHFVDTDKLITRVVGKSI-----PE----------- 55 (182)
T ss_pred CCCCCCC-CCCCCEEEECCCCCCHHHHHHHHHHHHC--------CCEEECHHHHHHHHCCCH-----HH-----------
T ss_conf 9866579-9998189889999988999999999969--------598888499999889399-----99-----------
Q ss_pred EEEEECCCCCHHHHHHHHHHH---HCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEC-----------CCCCCCC
Q ss_conf 999617873002799999997---30268999986878865589999999970996799832-----------6788753
Q gi|254780321|r 80 LNLIDTPGHVDFTYEVSRSLS---ACEGSLLVVDATQGVEAQTLANVYQAIDNNHEIITVLN-----------KADLPSA 145 (606)
Q Consensus 80 iNlIDTPGH~DF~~EV~r~l~---a~dgaiLvVdA~~Gvq~QT~~~~~~A~~~~l~~I~viN-----------KiD~~~A 145 (606)
|...-|..-|--.=...|. ..+. .||+---|+- -...++.+..+.+ .+++++ .-+||--
T Consensus 56 --IF~~~GE~~FR~~E~~~l~~l~~~~~--~VIStGGG~v-~~~~n~~~l~~~g--~vv~L~~~~~~i~~R~~~~~RPll 128 (182)
T PRK13948 56 --VFAQEGEEYFRACEKEVVRRVTRLDY--AVISLGGGTF-IHEENRRALLGRG--PVVVLWASPETVYQRTKHSDRPLL 128 (182)
T ss_pred --HHHHHCHHHHHHHHHHHHHHHHCCCC--EEEECCCCEE-CCHHHHHHHHHCC--EEEEEECCHHHHHHHCCCCCCCCC
T ss_conf --99984899999999999999974799--6997588500-5899999999689--899996999999988178999988
Q ss_pred CCCCHHHHHHHHHH----HH--HHHHHHHHHHCCCCCCHHHHHHHHHHHC
Q ss_conf 21133888775553----22--3210001110022320067877632100
Q gi|254780321|r 146 DPDRVKKQIEETIG----IS--TEDALLVSAKTGEGIPLLLERIVQQLPS 189 (606)
Q Consensus 146 ~~e~v~~ei~~~~g----~~--~~~ii~vSAktG~GV~~LLd~Iv~~iP~ 189 (606)
......+++++++. +. ++-.+-+ .+..++++.+.|++.+-+
T Consensus 129 ~~~~~~~~l~~l~~eR~~~Y~~A~~~I~t---d~~~~~eiv~~Ii~~L~a 175 (182)
T PRK13948 129 QVEDPLERIRTLMEEREPVYRQGTIHVHS---DGRPVEEIVEEVVERLWA 175 (182)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHCCEEEEC---CCCCHHHHHHHHHHHHHH
T ss_conf 89987999999999999999967889889---989999999999999999
No 397
>TIGR00959 ffh signal recognition particle protein; InterPro: IPR004780 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes , . SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor . In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. This entry represents various SRP subunits.; GO: 0008312 7S RNA binding, 0006614 SRP-dependent cotranslational protein targeting to membrane, 0048500 signal recognition particle.
Probab=94.27 E-value=0.2 Score=29.03 Aligned_cols=123 Identities=25% Similarity=0.306 Sum_probs=64.6
Q ss_pred EEEEECCCCCCHHHHHHHHHHH--CCCCCC----------C-CCCCE-------E-ECCCH-HHHHHC----CEEEEEEE
Q ss_conf 7999801389877889999998--298054----------4-44311-------3-05867-798719----50523279
Q gi|254780321|r 13 NFSIVAHIDHGKSTLADRFIQH--CRGLTE----------R-EMSSQ-------V-LDNMD-IERERG----ITIKAQTV 66 (606)
Q Consensus 13 N~~IiaHvDhGKTTL~d~lL~~--tg~i~~----------~-~~~~~-------v-lD~~~-~EreRG----ITIka~~~ 66 (606)
.|=.+|=-++||||.+..|-+. ...-.+ | .+.+| + .+..+ .+.+.. +-|-++
T Consensus 104 vilmvGLQGsGKTTt~gKLA~~ll~kk~~~kvLLva~D~yRPAA~~QL~~Lg~Q~gVpvf~h~~~~~~p~~Pv~ia~~-- 181 (439)
T TIGR00959 104 VILMVGLQGSGKTTTAGKLALYLLKKKEGKKVLLVACDLYRPAAIEQLKVLGEQVGVPVFAHLGKGQSPDDPVEIARQ-- 181 (439)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHH--
T ss_conf 899731378857889999999999986389703403210347899999997675288711004788898877899999--
Q ss_pred EEEEECCCCCEEEEEEEECCC--CCHH-----HHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCE-EEEEC
Q ss_conf 999743788438999961787--3002-----799999997302689999868788655899999999709967-99832
Q gi|254780321|r 67 RLNYTSTDAKDYQLNLIDTPG--HVDF-----TYEVSRSLSACEGSLLVVDATQGVEAQTLANVYQAIDNNHEI-ITVLN 138 (606)
Q Consensus 67 ~~~~~~~~~~~y~iNlIDTPG--H~DF-----~~EV~r~l~a~dgaiLvVdA~~Gvq~QT~~~~~~A~~~~l~~-I~viN 138 (606)
.+.|...++.|+. ||||=| |.|= -.++.+.++= +=.||||||-.| |+-.+.-.++...|.+ =+|+.
T Consensus 182 Al~~Ak~~~~D~v--I~DTAGRL~ID~~LM~EL~~iK~~~nP-~EiLlVvDaM~G---QdAvn~A~~F~e~lgltG~vlt 255 (439)
T TIGR00959 182 ALEEAKENGFDVV--IVDTAGRLQIDEELMEELAEIKEILNP-DEILLVVDAMTG---QDAVNTAKTFNERLGLTGVVLT 255 (439)
T ss_pred HHHHHHHCCCCEE--EEECCCCHHHHHHHHHHHHHHHHHHCC-CEEEECCHHCCH---HHHHHHHHHHCCCCCCCEEEEE
T ss_conf 9999997489789--972675125559999999999888688-705412201021---6999999863660013547885
Q ss_pred CCCCC
Q ss_conf 67887
Q gi|254780321|r 139 KADLP 143 (606)
Q Consensus 139 KiD~~ 143 (606)
|||=+
T Consensus 256 K~DGD 260 (439)
T TIGR00959 256 KLDGD 260 (439)
T ss_pred CCCCC
T ss_conf 47566
No 398
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.25 E-value=0.45 Score=26.66 Aligned_cols=12 Identities=25% Similarity=0.412 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHC
Q ss_conf 067877632100
Q gi|254780321|r 178 LLLERIVQQLPS 189 (606)
Q Consensus 178 ~LLd~Iv~~iP~ 189 (606)
.|.+.+++++|.
T Consensus 307 ~Lar~L~~~lP~ 318 (557)
T PRK12727 307 GLTRDVAMQIPA 318 (557)
T ss_pred HHHHHHHHHCCC
T ss_conf 999999974833
No 399
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=94.20 E-value=0.47 Score=26.59 Aligned_cols=121 Identities=21% Similarity=0.271 Sum_probs=59.5
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHCCEE---E-------E-EEEEEEEECCCCCEEEEEE
Q ss_conf 999801389877889999998298054444311305867798719505---2-------3-2799997437884389999
Q gi|254780321|r 14 FSIVAHIDHGKSTLADRFIQHCRGLTEREMSSQVLDNMDIERERGITI---K-------A-QTVRLNYTSTDAKDYQLNL 82 (606)
Q Consensus 14 ~~IiaHvDhGKTTL~d~lL~~tg~i~~~~~~~~vlD~~~~EreRGITI---k-------a-~~~~~~~~~~~~~~y~iNl 82 (606)
++|+|--..|||||--++-. +++ +..+- =+--+|--.||+- . . .+....+....++-.-+.|
T Consensus 1 iGiVGlPNvGKSTlFnAlT~-~~~----~~any--PF~TIePN~Gv~~v~v~~p~~~l~~~~~~~~~~~~~~~r~vPve~ 73 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATL-ADV----EIANY--PFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVEL 73 (318)
T ss_pred CCEECCCCCCHHHHHHHHHC-CCC----CCCCC--CCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCEECCEEE
T ss_conf 93448898988999999977-998----51279--966767741620055688416664330433120147740033267
Q ss_pred EECCCCCH-------HHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCHHHHHH
Q ss_conf 61787300-------27999999973026899998687886558999999997099679983267887532113388877
Q gi|254780321|r 83 IDTPGHVD-------FTYEVSRSLSACEGSLLVVDATQGVEAQTLANVYQAIDNNHEIITVLNKADLPSADPDRVKKQIE 155 (606)
Q Consensus 83 IDTPGH~D-------F~~EV~r~l~a~dgaiLvVdA~~Gvq~QT~~~~~~A~~~~l~~I~viNKiD~~~A~~e~v~~ei~ 155 (606)
+|.+|-+- .+..--.-+|-||.-+-||||...-...- . ..+..+.| |-.|.+.+..|+.
T Consensus 74 vDIAGLV~GAskG~GLGNkFL~~iRe~DaiihVVd~sg~td~eg-----------~--~~~~g~~D-P~~Die~I~~EL~ 139 (318)
T cd01899 74 IDVAGLVPGAHEGKGLGNKFLDDLRDADALIHVVDASGGTDAEG-----------N--GVETGGHD-PLEDIEFLENEID 139 (318)
T ss_pred EECHHHHCCCCCCCCCHHHHHHHHHHCCEEEEEEECCCCCCCCC-----------C--CCCCCCCC-HHHHHHHHHHHHH
T ss_conf 52100105664577665999999984788999850478867887-----------6--47789959-6888999999999
No 400
>KOG1487 consensus
Probab=94.19 E-value=0.076 Score=31.87 Aligned_cols=169 Identities=21% Similarity=0.200 Sum_probs=76.5
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHCCEEEEEEEEEEEECCCCCEEEEEEEECCCCCHH-
Q ss_conf 7999801389877889999998298054444311305867798719505232799997437884389999617873002-
Q gi|254780321|r 13 NFSIVAHIDHGKSTLADRFIQHCRGLTEREMSSQVLDNMDIERERGITIKAQTVRLNYTSTDAKDYQLNLIDTPGHVDF- 91 (606)
Q Consensus 13 N~~IiaHvDhGKTTL~d~lL~~tg~i~~~~~~~~vlD~~~~EreRGITIka~~~~~~~~~~~~~~y~iNlIDTPGH~DF- 91 (606)
-++.++--.-|||||+-.| +|+.++-.+.+ --.=+|| .-.+.|.+. +|-|.|-||-.+=
T Consensus 61 ~vg~vgFPSvGksTl~~~l---~g~~s~vasye---------fttl~~v---pG~~~y~ga-----Kiqlldlpgiiega 120 (358)
T KOG1487 61 RVGFVGFPSVGKSTLLSKL---TGTFSEVAAYE---------FTTLTTV---PGVIRYKGA-----KIQLLDLPGIIEGA 120 (358)
T ss_pred EEEEEECCCCCHHHHHHHH---CCCCCCCCCCC---------CEEEEEE---CCEEECCCC-----CEEEECCCCHHCCC
T ss_conf 5537853766624332230---18887655433---------2268970---666740456-----23430485400146
Q ss_pred ------HHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCC-EEEEECCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf ------79999999730268999986878865589999999970996-79983267887532113388877555322321
Q gi|254780321|r 92 ------TYEVSRSLSACEGSLLVVDATQGVEAQTLANVYQAIDNNHE-IITVLNKADLPSADPDRVKKQIEETIGISTED 164 (606)
Q Consensus 92 ------~~EV~r~l~a~dgaiLvVdA~~Gvq~QT~~~~~~A~~~~l~-~I~viNKiD~~~A~~e~v~~ei~~~~g~~~~~ 164 (606)
+-.|...-+.|.-.++|.|+..-+.- ...++..|+ .=+-+||- +.+
T Consensus 121 kdgkgrg~qviavartcnli~~vld~~kp~~h------k~~ie~eleg~girlnk~---------------------pp~ 173 (358)
T KOG1487 121 KDGKGRGKQVIAVARTCNLIFIVLDVLKPLSH------KKIIEKELEGFGIRLNKQ---------------------PPN 173 (358)
T ss_pred CCCCCCCCEEEEEEECCCEEEEEEECCCCCCH------HHHHHHHHHCCEEECCCC---------------------CCC
T ss_conf 46788760788883016589987110675217------889987631036661488---------------------997
Q ss_pred HHH-HHHHCCCCCCH--H-HHHHHHHHHCCCCHHHHHCCCCCCCCCEEECCCCCEEEEEEECCCCCCCCCEE
Q ss_conf 000-11100223200--6-78776321000111122012331012101147572599998169873558458
Q gi|254780321|r 165 ALL-VSAKTGEGIPL--L-LERIVQQLPSPTSPEGANAPLKALLIDSWYNSYLGVMVLVRIINGQLTKGQSI 232 (606)
Q Consensus 165 ii~-vSAktG~GV~~--L-Ld~Iv~~iP~P~~~~~~~~Pl~alVfds~~D~~~G~I~~~RV~sG~lk~Gd~I 232 (606)
+.. ---+.|+++.. | +|.+..-+-.-+. .+.+ .+|-||...|.+.|+|..-|++=+.+-.--+|
T Consensus 174 i~~kkKdkgGInlt~~~LdlD~~rsil~eyR~-hsAd---i~Lr~DaT~DdLIdvVegnr~yVp~iyvLNkI 241 (358)
T KOG1487 174 IGTKKKDKGGINLTGTHLDLDLQRSILSEYRI-HSAD---IALRFDATADDLIDVVEGNRIYVPCIYVLNKI 241 (358)
T ss_pred CCCCCCCCCCEEEECCHHHHHHHHHHHHHHHH-CCHH---EEEECCCCHHHHHHHHCCCCEEEEEEEEECCC
T ss_conf 63012444743001320027889999887643-1023---05635764222432200573156655562223
No 401
>PRK09563 rbgA ribosomal biogenesis GTPase; Reviewed
Probab=94.16 E-value=0.093 Score=31.28 Aligned_cols=24 Identities=13% Similarity=0.232 Sum_probs=11.5
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 899998687886558999999997
Q gi|254780321|r 105 SLLVVDATQGVEAQTLANVYQAID 128 (606)
Q Consensus 105 aiLvVdA~~Gvq~QT~~~~~~A~~ 128 (606)
.|+|++=.+-+.+.....|..-++
T Consensus 54 ~ilvlNK~DL~~~~~~~~w~~~~~ 77 (282)
T PRK09563 54 RLLVLNKSDLADPEVTKKWIEYFE 77 (282)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 699975554889999999999997
No 402
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=94.10 E-value=0.15 Score=29.93 Aligned_cols=42 Identities=26% Similarity=0.350 Sum_probs=26.3
Q ss_pred CEEEEEEECCCCCCHH--HHHHHHHHHHCCCCEEEEECCCCCCC
Q ss_conf 2689999868788655--89999999970996799832678875
Q gi|254780321|r 103 EGSLLVVDATQGVEAQ--TLANVYQAIDNNHEIITVLNKADLPS 144 (606)
Q Consensus 103 dgaiLvVdA~~Gvq~Q--T~~~~~~A~~~~l~~I~viNKiD~~~ 144 (606)
|-+|-|+||..-.-.. -.+.+......+-++|+|+||+|+-.
T Consensus 1 DvVleV~DAR~Plss~np~l~~~~~~~~~~K~~ilVlNK~DL~~ 44 (172)
T cd04178 1 DVILEVLDARDPLGCRCPQVEEAVLQAGGNKKLVLVLNKIDLVP 44 (172)
T ss_pred CEEEEEEEECCCCCCCCHHHHHHHHHHCCCCCEEEEEECHHCCC
T ss_conf 98999997037867688749999986069984899985232189
No 403
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=94.08 E-value=0.079 Score=31.75 Aligned_cols=15 Identities=40% Similarity=0.494 Sum_probs=8.0
Q ss_pred HHHHHHHHHHCCCEE
Q ss_conf 204687676357418
Q gi|254780321|r 461 FDFYDRLKSVSKGYA 475 (606)
Q Consensus 461 ~~f~~~LkS~T~G~a 475 (606)
-.|.+..+...+||-
T Consensus 464 k~~kddv~ev~~G~e 478 (509)
T COG0532 464 KRFKDDVKEVRKGQE 478 (509)
T ss_pred ECCCCCHHHHCCCCE
T ss_conf 246764767216867
No 404
>COG1149 MinD superfamily P-loop ATPase containing an inserted ferredoxin domain [Energy production and conversion]
Probab=93.99 E-value=0.25 Score=28.37 Aligned_cols=56 Identities=14% Similarity=0.156 Sum_probs=29.8
Q ss_pred CCCCEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCC-CCCCCCCCCCEEEEEECCHHHHHHHHHHHHHHCCCEEEEECC
Q ss_conf 2221266421267702457889999888641122111-256760004202899637678988898886644950697378
Q gi|254780321|r 299 PIQPVVFCGLFPVDATQFENLRTAINKLRLNDASFSF-ELENSTALGFGFRCGFLGLLHLEIIQERLEREFSLNLIGTSP 377 (606)
Q Consensus 299 ~~~P~v~~~i~p~~~~d~~~L~~aL~kL~~~D~sl~~-e~Ets~aLg~Gfr~gglG~LHLeVi~eRL~rEfg~ev~~t~P 377 (606)
..+|+.| .-.|+..+.+.++++.. |+..+ .+- ..|.- -+|+.-+|+|+++...-|
T Consensus 192 VTEPTp~------glhD~kr~~el~~~f~i--p~~iViNr~------------~~g~s----~ie~~~~e~gi~il~~IP 247 (284)
T COG1149 192 VTEPTPF------GLHDLKRALELVEHFGI--PTGIVINRY------------NLGDS----EIEEYCEEEGIPILGEIP 247 (284)
T ss_pred EECCCCC------CHHHHHHHHHHHHHHCC--CEEEEEECC------------CCCCH----HHHHHHHHCCCCEEEECC
T ss_conf 8168852------36689999999998399--549999667------------77720----899988873997268788
Q ss_pred C
Q ss_conf 2
Q gi|254780321|r 378 S 378 (606)
Q Consensus 378 ~ 378 (606)
-
T Consensus 248 y 248 (284)
T COG1149 248 Y 248 (284)
T ss_pred C
T ss_conf 6
No 405
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=93.86 E-value=0.15 Score=29.98 Aligned_cols=18 Identities=44% Similarity=0.486 Sum_probs=8.9
Q ss_pred EEEECCCCCCHHHHHHHH
Q ss_conf 999801389877889999
Q gi|254780321|r 14 FSIVAHIDHGKSTLADRF 31 (606)
Q Consensus 14 ~~IiaHvDhGKTTL~d~l 31 (606)
++|+|--.-|||||.-+|
T Consensus 121 v~vVG~PNVGKSSlIN~L 138 (276)
T TIGR03596 121 AMIVGIPNVGKSTLINRL 138 (276)
T ss_pred EEEECCCCCCHHHHHHHH
T ss_conf 999727987589999987
No 406
>KOG1673 consensus
Probab=93.77 E-value=0.44 Score=26.75 Aligned_cols=153 Identities=18% Similarity=0.306 Sum_probs=84.5
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHCCEEEEEEEEEEEECCCCCEEEEEEEECCCCCHHH
Q ss_conf 79998013898778899999982980544443113058677987195052327999974378843899996178730027
Q gi|254780321|r 13 NFSIVAHIDHGKSTLADRFIQHCRGLTEREMSSQVLDNMDIERERGITIKAQTVRLNYTSTDAKDYQLNLIDTPGHVDFT 92 (606)
Q Consensus 13 N~~IiaHvDhGKTTL~d~lL~~tg~i~~~~~~~~vlD~~~~EreRGITIka~~~~~~~~~~~~~~y~iNlIDTPGH~DF~ 92 (606)
-++++|...-|||||.- ..-|...+ -+-+++-|+--.-+++++. +-+-.+.+.|--|...|.
T Consensus 22 kv~llGD~qiGKTs~mv---kYV~~~~d----------e~~~q~~GvN~mdkt~~i~-----~t~IsfSIwdlgG~~~~~ 83 (205)
T KOG1673 22 KVGLLGDAQIGKTSLMV---KYVQNEYD----------EEYTQTLGVNFMDKTVSIR-----GTDISFSIWDLGGQREFI 83 (205)
T ss_pred EEEEECCCCCCCEEEEH---HHHCCHHH----------HHHHHHHCCCCEEEEEEEC-----CEEEEEEEEECCCCHHHH
T ss_conf 99851365458354304---45413127----------8888874740021078862-----408999987437747554
Q ss_pred HHHHHHHH-HCCEE---EEEEECCCCCCHHHH-HHHHHHHHCCCCEEEE--ECCCC----CCCCCCCCHHHHHHHHHHHH
Q ss_conf 99999997-30268---999986878865589-9999999709967998--32678----87532113388877555322
Q gi|254780321|r 93 YEVSRSLS-ACEGS---LLVVDATQGVEAQTL-ANVYQAIDNNHEIITV--LNKAD----LPSADPDRVKKQIEETIGIS 161 (606)
Q Consensus 93 ~EV~r~l~-a~dga---iLvVdA~~Gvq~QT~-~~~~~A~~~~l~~I~v--iNKiD----~~~A~~e~v~~ei~~~~g~~ 161 (606)
. .|. ||-++ |...|-+.-----.+ +.++.|...+-.-||+ =.|-| +|--..+.+..|-..--..-
T Consensus 84 n----~lPiac~dsvaIlFmFDLt~r~TLnSi~~WY~QAr~~NktAiPilvGTKyD~fi~lp~e~Q~~I~~qar~YAk~m 159 (205)
T KOG1673 84 N----MLPIACKDSVAILFMFDLTRRSTLNSIKEWYRQARGLNKTAIPILVGTKYDLFIDLPPELQETISRQARKYAKVM 159 (205)
T ss_pred C----CCCEEECCCEEEEEEEECCCHHHHHHHHHHHHHHHCCCCCCCEEEECCCHHHHHCCCHHHHHHHHHHHHHHHHHH
T ss_conf 0----476544473799999844766778889999998742577531388524357662489889899999999999973
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHH
Q ss_conf 32100011100223200678776321
Q gi|254780321|r 162 TEDALLVSAKTGEGIPLLLERIVQQL 187 (606)
Q Consensus 162 ~~~ii~vSAktG~GV~~LLd~Iv~~i 187 (606)
....++||+-.++||+.++.-+..++
T Consensus 160 nAsL~F~Sts~sINv~KIFK~vlAkl 185 (205)
T KOG1673 160 NASLFFCSTSHSINVQKIFKIVLAKL 185 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 78379861365202999999999998
No 407
>TIGR01184 ntrCD nitrate ABC transporter, ATP-binding proteins C and D; InterPro: IPR005890 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase. ; GO: 0015112 nitrate transmembrane transporter activity, 0015706 nitrate transport, 0016020 membrane.
Probab=93.75 E-value=0.041 Score=33.66 Aligned_cols=28 Identities=32% Similarity=0.458 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 79998013898778899999982980544443
Q gi|254780321|r 13 NFSIVAHIDHGKSTLADRFIQHCRGLTEREMS 44 (606)
Q Consensus 13 N~~IiaHvDhGKTTL~d~lL~~tg~i~~~~~~ 44 (606)
=||+|||.++|||||.. |+ +| +.+...+
T Consensus 13 FisliGHSGCGKSTLLN-li--~G-l~~P~~G 40 (230)
T TIGR01184 13 FISLIGHSGCGKSTLLN-LI--SG-LAQPTSG 40 (230)
T ss_pred EEEEECCCCCCHHHHHH-HH--HH-CCCCCCC
T ss_conf 69985127861789999-98--50-0577776
No 408
>cd03701 IF2_IF5B_II IF2_IF5B_II: This family represents the domain II of prokaryotic Initiation Factor 2 (IF2) and its archeal and eukaryotic homologue aeIF5B. IF2, the largest initiation factor is an essential GTP binding protein. In E. coli three natural forms of IF2 exist in the cell, IF2alpha, IF2beta1, and IF2beta2. Disruption of the eIF5B gene (FUN12) in yeast causes a severe slow-growth phenotype, associated with a defect in translation. eIF5B has a function analogous to prokaryotic IF2 in mediating the joining of the 60S ribosomal subunit. The eIF5B consists of three N-terminal domains (I, II, II) connected by a long helix to domain IV. Domain I is a G domain, domain II and IV are beta-barrels and domain III has a novel alpha-beta-alpha sandwich fold. The G domain and the beta-barrel domain II display a similar structure and arrangement to the homologous domains in EF1A, eEF1A and aeIF2gamma.
Probab=93.72 E-value=0.1 Score=30.94 Aligned_cols=77 Identities=23% Similarity=0.302 Sum_probs=51.5
Q ss_pred CCCCCCEEECCCCCEEEEEEECCCCCCCCCEEEEECCCCCCCCCCCCCCCCCEEEEHHCCCCCHHHHHHCCCCCCCCCCC
Q ss_conf 31012101147572599998169873558458873355642101222335541240101247123322011002444454
Q gi|254780321|r 201 KALLIDSWYNSYLGVMVLVRIINGQLTKGQSIRLMGTNAKYQVERIGILTPKMIDIEALYPGEIGVMIASIKEVSHTRVG 280 (606)
Q Consensus 201 ~alVfds~~D~~~G~I~~~RV~sG~lk~Gd~I~~~~~g~~~~v~~ig~~~~~~~~v~~l~aGdVG~ii~gik~l~~~~vG 280 (606)
++.|..+..|+.+|.++.+-|.+|+|++||.+..-.... ++..+ +......++++.+++.- .+.|..++ -..|
T Consensus 2 ~g~ViEs~~d~g~G~vatviV~~GtL~~Gd~iv~G~~~g--kVr~~--~d~~g~~v~~a~Ps~pV-~i~G~~~~--P~aG 74 (95)
T cd03701 2 EGTVIESKLDKGRGPVATVIVQNGTLKKGDVIVAGGTYG--KIRTM--VDENGKALLEAGPSTPV-EILGLKDV--PKAG 74 (95)
T ss_pred EEEEEEEEECCCCCCEEEEEEECCCCCCCCEEEECCCEE--EEEEE--ECCCCCCCCEECCCCCE-EEECCCCC--CCCC
T ss_conf 499999997699883799999348655599999798787--89999--99999999888699849-99577899--9999
Q ss_pred CEEC
Q ss_conf 2000
Q gi|254780321|r 281 DTIT 284 (606)
Q Consensus 281 DTl~ 284 (606)
|-+.
T Consensus 75 d~~~ 78 (95)
T cd03701 75 DGVL 78 (95)
T ss_pred CEEE
T ss_conf 9999
No 409
>PRK11568 hypothetical protein; Provisional
Probab=93.70 E-value=0.46 Score=26.61 Aligned_cols=69 Identities=20% Similarity=0.221 Sum_probs=62.2
Q ss_pred HCCEEEEEEEECCCCCHHHHHHHHHHHHEEECCCCCCCEEEEEEEECHHHHHHHHHHHHHHHCCCEEEEEE
Q ss_conf 23269999980831000389998863001424433683699999960433322046876763574188898
Q gi|254780321|r 409 REPWIQVTIITPNEYLGSILKLCQERRGIQIDMSHLDNRAMIVYELPLNEVIFDFYDRLKSVSKGYASFDY 479 (606)
Q Consensus 409 ~EPi~~~~I~~P~ey~G~Vm~~l~~RRG~~~~m~~~~~~~~i~~~vPl~Eli~~f~~~LkS~T~G~as~~y 479 (606)
..|...++|.+|=...|.++..+.+..+++.+.+|.+ .+.+...+|..+. -.|..+|..+|+|...+..
T Consensus 133 ~~~~~~~~~~~~Y~~~~~v~~~l~~~~~~i~~~~y~~-~V~~~~~v~~~~~-~~~~~~l~~~t~G~v~i~~ 201 (204)
T PRK11568 133 KTPLTEYTLQCEYSQLAGIEALLGQFDGKIINSDYQA-FVTLRVALPAAKV-AEFSAKLADFSRGSLQLLA 201 (204)
T ss_pred EEEEEEEEEEECHHHHHHHHHHHHHCCCEEEEEEECC-EEEEEEEECHHHH-HHHHHHHHHHCCCEEEEEE
T ss_conf 9986899999867788999999998699897067147-0899999878999-9999999996799079996
No 410
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=93.59 E-value=0.6 Score=25.85 Aligned_cols=113 Identities=19% Similarity=0.232 Sum_probs=58.2
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCC---------CCCCCCCCEEECCCHHHHHHCCE--EEEEEEEEEEECCCCCEEEEE
Q ss_conf 7999801389877889999998298---------05444431130586779871950--523279999743788438999
Q gi|254780321|r 13 NFSIVAHIDHGKSTLADRFIQHCRG---------LTEREMSSQVLDNMDIERERGIT--IKAQTVRLNYTSTDAKDYQLN 81 (606)
Q Consensus 13 N~~IiaHvDhGKTTL~d~lL~~tg~---------i~~~~~~~~vlD~~~~EreRGIT--Ika~~~~~~~~~~~~~~y~iN 81 (606)
.++|+|--..|||||--++-. +++ |....+.--+-| +|-.-.. ++. +..+.--.+.
T Consensus 4 ~~GIVGlPNVGKSTlFnAlT~-~~a~~aNYPF~TIePN~Giv~v~d----~rl~~L~~~~~c--------~~k~~~~~ve 70 (372)
T COG0012 4 KIGIVGLPNVGKSTLFNALTK-AGAEIANYPFCTIEPNVGVVYVPD----CRLDELAEIVKC--------PPKIRPAPVE 70 (372)
T ss_pred EEEEECCCCCCHHHHHHHHHC-CCCCCCCCCCCCCCCCEEEEECCC----HHHHHHHHHCCC--------CCCEEEEEEE
T ss_conf 267741898858889999974-896424898542657732796473----678999875389--------9747761048
Q ss_pred EEECCCCCHH-------HHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCHHHHH
Q ss_conf 9617873002-------799999997302689999868788655899999999709967998326788753211338887
Q gi|254780321|r 82 LIDTPGHVDF-------TYEVSRSLSACEGSLLVVDATQGVEAQTLANVYQAIDNNHEIITVLNKADLPSADPDRVKKQI 154 (606)
Q Consensus 82 lIDTPGH~DF-------~~EV~r~l~a~dgaiLvVdA~~Gvq~QT~~~~~~A~~~~l~~I~viNKiD~~~A~~e~v~~ei 154 (606)
|+|..|-+-= +..--.-+|-+|+-+.||+|.+.-.. .-+-+++| |-.|.+.+..|+
T Consensus 71 ~vDIAGLV~GAs~GeGLGNkFL~~IRevdaI~hVVr~f~d~di----------------~hv~~~vD-P~~DIe~I~~EL 133 (372)
T COG0012 71 FVDIAGLVKGASKGEGLGNKFLDNIREVDAIIHVVRCFGDTDI----------------EHVEGKVD-PVEDIEIINTEL 133 (372)
T ss_pred EEEECCCCCCCCCCCCCCHHHHHHHHHCCEEEEEEEECCCCCC----------------CCCCCCCC-CHHHHHHHHHHH
T ss_conf 9982453788546888647878765514858999985389865----------------47878839-277799999999
Q ss_pred H
Q ss_conf 7
Q gi|254780321|r 155 E 155 (606)
Q Consensus 155 ~ 155 (606)
-
T Consensus 134 ~ 134 (372)
T COG0012 134 I 134 (372)
T ss_pred H
T ss_conf 9
No 411
>KOG3883 consensus
Probab=93.54 E-value=0.61 Score=25.80 Aligned_cols=166 Identities=18% Similarity=0.241 Sum_probs=92.0
Q ss_pred HHHCEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHCCEEEEEEEEEEEECCCCCEEEEEEEECCC
Q ss_conf 52531799980138987788999999829805444431130586779871950523279999743788438999961787
Q gi|254780321|r 8 LSRIRNFSIVAHIDHGKSTLADRFIQHCRGLTEREMSSQVLDNMDIERERGITIKAQTVRLNYTSTDAKDYQLNLIDTPG 87 (606)
Q Consensus 8 ~~~IRN~~IiaHvDhGKTTL~d~lL~~tg~i~~~~~~~~vlD~~~~EreRGITIka~~~~~~~~~~~~~~y~iNlIDTPG 87 (606)
|-+.--+.+.|--.-|||.+.++|+|--..+. .+...++-| |- .+++. ...|-.-.+-|-||-|
T Consensus 6 mGk~~kVvVcG~k~VGKTaileQl~yg~~~~~-~e~~pTiED---------iY----~~sve--t~rgarE~l~lyDTaG 69 (198)
T KOG3883 6 MGKVCKVVVCGMKSVGKTAILEQLLYGNHVPG-TELHPTIED---------IY----VASVE--TDRGAREQLRLYDTAG 69 (198)
T ss_pred HCCCEEEEEECCCCCCHHHHHHHHHHCCCCCC-CCCCCCHHH---------HE----EEEEE--CCCCHHHEEEEEECCC
T ss_conf 17640799977745228999999985167889-766663442---------24----67640--6878101688865244
Q ss_pred CCHHHHHHHHH-HHHCCEEEEEEECCCCCCHHHHHHHHHHHHC-----CCCEEEEECCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 30027999999-9730268999986878865589999999970-----99679983267887532113388877555322
Q gi|254780321|r 88 HVDFTYEVSRS-LSACEGSLLVVDATQGVEAQTLANVYQAIDN-----NHEIITVLNKADLPSADPDRVKKQIEETIGIS 161 (606)
Q Consensus 88 H~DF~~EV~r~-l~a~dgaiLvVdA~~Gvq~QT~~~~~~A~~~-----~l~~I~viNKiD~~~A~~e~v~~ei~~~~g~~ 161 (606)
-.+..-|.-|. ++++||-+||-+..+----|-++.+.+-++. .++|++.-||.|+. +|-++..+..... ..
T Consensus 70 lq~~~~eLprhy~q~aDafVLVYs~~d~eSf~rv~llKk~Idk~KdKKEvpiVVLaN~rdr~--~p~~vd~d~A~~W-a~ 146 (198)
T KOG3883 70 LQGGQQELPRHYFQFADAFVLVYSPMDPESFQRVELLKKEIDKHKDKKEVPIVVLANKRDRA--EPREVDMDVAQIW-AK 146 (198)
T ss_pred CCCCHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECHHHCC--CCHHCCHHHHHHH-HH
T ss_conf 55760020276710576579996379988988999999998625565512289973001013--6401278899888-76
Q ss_pred HHH--HHHHHHHCCCCCCHHHHHHHHHHHCCCC
Q ss_conf 321--0001110022320067877632100011
Q gi|254780321|r 162 TED--ALLVSAKTGEGIPLLLERIVQQLPSPTS 192 (606)
Q Consensus 162 ~~~--ii~vSAktG~GV~~LLd~Iv~~iP~P~~ 192 (606)
.+. ..-++|+.....-+-+-.+..++-.|+.
T Consensus 147 rEkvkl~eVta~dR~sL~epf~~l~~rl~~pqs 179 (198)
T KOG3883 147 REKVKLWEVTAMDRPSLYEPFTYLASRLHQPQS 179 (198)
T ss_pred HHHEEEEEEEECCCHHHHHHHHHHHHHCCCCCC
T ss_conf 530247898713442245389999875058754
No 412
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=93.48 E-value=0.11 Score=30.79 Aligned_cols=46 Identities=28% Similarity=0.445 Sum_probs=33.6
Q ss_pred HHHCEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCH-HHHHHCCEE
Q ss_conf 525317999801389877889999998298054444311305867-798719505
Q gi|254780321|r 8 LSRIRNFSIVAHIDHGKSTLADRFIQHCRGLTEREMSSQVLDNMD-IERERGITI 61 (606)
Q Consensus 8 ~~~IRN~~IiaHvDhGKTTL~d~lL~~tg~i~~~~~~~~vlD~~~-~EreRGITI 61 (606)
|+.-|||.+||.-++||||+.-.|-...|. .+.|.++ +|+.-|.||
T Consensus 1 M~~kknI~LiG~mGsGKstvgk~LA~~l~~--------~fiD~D~~Ie~~~g~si 47 (172)
T PRK05057 1 MAEKRNIFLVGPMGAGKSTIGRQLAQQLNM--------EFYDSDQEIEKRTGADI 47 (172)
T ss_pred CCCCCCEEEECCCCCCHHHHHHHHHHHHCC--------CEEECHHHHHHHHCCCH
T ss_conf 998882898899999889999999999699--------96878099999979899
No 413
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=93.46 E-value=0.31 Score=27.81 Aligned_cols=126 Identities=22% Similarity=0.201 Sum_probs=72.0
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECC------CHHHHHHCCEEEEEEEEEE--EECCC----CCEEEE
Q ss_conf 79998013898778899999982980544443113058------6779871950523279999--74378----843899
Q gi|254780321|r 13 NFSIVAHIDHGKSTLADRFIQHCRGLTEREMSSQVLDN------MDIERERGITIKAQTVRLN--YTSTD----AKDYQL 80 (606)
Q Consensus 13 N~~IiaHvDhGKTTL~d~lL~~tg~i~~~~~~~~vlD~------~~~EreRGITIka~~~~~~--~~~~~----~~~y~i 80 (606)
-+||||.-++|||||.-.| +|.+.- ..+.=.+|. -.-|..|-|..-.|..... +.-.+ |+.-..
T Consensus 30 i~~iiGpNG~GKSTLLk~l---~~~l~p-~~G~V~l~g~~i~~~~~kelAk~ia~vpQ~~~~~~~~tV~d~V~~GR~p~~ 105 (258)
T COG1120 30 ITGILGPNGSGKSTLLKCL---AGLLKP-KSGEVLLDGKDIASLSPKELAKKLAYVPQSPSAPFGLTVYELVLLGRYPHL 105 (258)
T ss_pred EEEEECCCCCCHHHHHHHH---HCCCCC-CCCEEEECCCCHHHCCHHHHHHHEEEECCCCCCCCCCEEEEHHHHCCCCCC
T ss_conf 9999899888999999998---656788-887799999724546988875618993567889999587361742677465
Q ss_pred EEEECCCCCHHHHHHHHHHHHCC---EEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCC
Q ss_conf 99617873002799999997302---689999868788655899999999709967998326788753211
Q gi|254780321|r 81 NLIDTPGHVDFTYEVSRSLSACE---GSLLVVDATQGVEAQTLANVYQAIDNNHEIITVLNKADLPSADPD 148 (606)
Q Consensus 81 NlIDTPGH~DF~~EV~r~l~a~d---gaiLvVdA~~Gvq~QT~~~~~~A~~~~l~~I~viNKiD~~~A~~e 148 (606)
++..+|+-.|-. .|..+|..++ -|-=.++.-+|-|-|-. .+-.|+.++-+++. +|-|.+..|
T Consensus 106 ~~~~~~~~~D~~-~v~~aL~~~~~~~la~r~~~~LSGGerQrv-~iAraLaQ~~~iLL----LDEPTs~LD 170 (258)
T COG1120 106 GLFGRPSKEDEE-IVEEALELLGLEHLADRPVDELSGGERQRV-LIARALAQETPILL----LDEPTSHLD 170 (258)
T ss_pred CCCCCCCHHHHH-HHHHHHHHHCCHHHHCCCCCCCCHHHHHHH-HHHHHHHCCCCEEE----ECCCCCCCC
T ss_conf 533578876899-999999982947776685511686688999-99999845899788----279720038
No 414
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=93.45 E-value=0.26 Score=28.33 Aligned_cols=75 Identities=23% Similarity=0.248 Sum_probs=46.9
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHCCEEEEEEEEEEEECCCCCEEEEEEEECCCCCHHHH
Q ss_conf 99980138987788999999829805444431130586779871950523279999743788438999961787300279
Q gi|254780321|r 14 FSIVAHIDHGKSTLADRFIQHCRGLTEREMSSQVLDNMDIERERGITIKAQTVRLNYTSTDAKDYQLNLIDTPGHVDFTY 93 (606)
Q Consensus 14 ~~IiaHvDhGKTTL~d~lL~~tg~i~~~~~~~~vlD~~~~EreRGITIka~~~~~~~~~~~~~~y~iNlIDTPGH~DF~~ 93 (606)
+++.+..+.||||++..|-.... +++..--+.| +|. ++||||..+...
T Consensus 2 i~~~~~kGvGKTT~a~~La~~la---~~g~~Vl~vD---------------------------d~i--iiD~~~~~~~~~ 49 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALA---KRGKRVLLID---------------------------DYV--LIDTPPGLGLLV 49 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHH---HCCCEEEEEC---------------------------CCE--EECCCCCCCHHH
T ss_conf 89858997768999999999999---8899699986---------------------------717--885899888468
Q ss_pred HH-HHHHHHCCEEEEEEECCCCCCHHHH
Q ss_conf 99-9999730268999986878865589
Q gi|254780321|r 94 EV-SRSLSACEGSLLVVDATQGVEAQTL 120 (606)
Q Consensus 94 EV-~r~l~a~dgaiLvVdA~~Gvq~QT~ 120 (606)
.- ..++.++|..++++.....-..++.
T Consensus 50 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 77 (99)
T cd01983 50 LLCLLALLAADLVIIVTTPEALAVLGAR 77 (99)
T ss_pred HHHHHHHHHCCEEEEECCCCHHHHHHHH
T ss_conf 9999878758958996598488999999
No 415
>KOG3886 consensus
Probab=93.39 E-value=0.35 Score=27.43 Aligned_cols=123 Identities=17% Similarity=0.258 Sum_probs=72.2
Q ss_pred HCEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHCCEEEEEEEEEEEECCC-CCEEEEEEEECCCC
Q ss_conf 53179998013898778899999982980544443113058677987195052327999974378-84389999617873
Q gi|254780321|r 10 RIRNFSIVAHIDHGKSTLADRFIQHCRGLTEREMSSQVLDNMDIERERGITIKAQTVRLNYTSTD-AKDYQLNLIDTPGH 88 (606)
Q Consensus 10 ~IRN~~IiaHvDhGKTTL~d~lL~~tg~i~~~~~~~~vlD~~~~EreRGITIka~~~~~~~~~~~-~~~y~iNlIDTPGH 88 (606)
.-|-+-+.|-.++|||++-..+ .+.-+.. + -+.-|=|| .+.+.+.. -.+-.+|+-|+-|.
T Consensus 3 ~~kKvlLMGrsGsGKsSmrsii--F~ny~a~-D-----------~~rlg~ti-----dveHsh~RflGnl~LnlwDcggq 63 (295)
T KOG3886 3 MKKKVLLMGRSGSGKSSMRSII--FANYIAR-D-----------TRRLGATI-----DVEHSHVRFLGNLVLNLWDCGGQ 63 (295)
T ss_pred CCCEEEEECCCCCCCCCCCHHH--HHHHHHH-H-----------HHCCCCCC-----EEEEHHHHHHHHHEEEHHCCCCC
T ss_conf 3023888504788743452056--6656566-5-----------51668861-----16643544420010002136780
Q ss_pred CHHHHHH-----HHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHC------CCCEEEEECCCCCCCCCCCCHH
Q ss_conf 0027999-----9999730268999986878865589999999970------9967998326788753211338
Q gi|254780321|r 89 VDFTYEV-----SRSLSACEGSLLVVDATQGVEAQTLANVYQAIDN------NHEIITVLNKADLPSADPDRVK 151 (606)
Q Consensus 89 ~DF~~EV-----~r~l~a~dgaiLvVdA~~Gvq~QT~~~~~~A~~~------~l~~I~viNKiD~~~A~~e~v~ 151 (606)
..|..-- ....+.++..+-|.|+..-=+.--..+++.|++. ..++...+.|||+..-|-.+..
T Consensus 64 e~fmen~~~~q~d~iF~nv~vli~vFDves~e~~~D~~~yqk~Le~ll~~SP~AkiF~l~hKmDLv~~d~r~~i 137 (295)
T KOG3886 64 EEFMENYLSSQEDNIFRNVQVLIYVFDVESREMEKDFHYYQKCLEALLQNSPEAKIFCLLHKMDLVQEDARELI 137 (295)
T ss_pred HHHHHHHHHHCCHHHHEEHEEEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECHHCCCCHHHHH
T ss_conf 99999887632001010021146654212136666489999999999853974237778740300025607899
No 416
>COG1161 Predicted GTPases [General function prediction only]
Probab=93.22 E-value=0.21 Score=28.92 Aligned_cols=19 Identities=37% Similarity=0.567 Sum_probs=7.2
Q ss_pred EEEECCCCCCHHHHHHHHH
Q ss_conf 9998013898778899999
Q gi|254780321|r 14 FSIVAHIDHGKSTLADRFI 32 (606)
Q Consensus 14 ~~IiaHvDhGKTTL~d~lL 32 (606)
+.++|=-.-|||||.-+|+
T Consensus 135 v~vvG~PNVGKSslIN~L~ 153 (322)
T COG1161 135 VGVVGYPNVGKSTLINRLL 153 (322)
T ss_pred EEEECCCCCCHHHHHHHHH
T ss_conf 9998789764899999986
No 417
>KOG3887 consensus
Probab=93.15 E-value=0.12 Score=30.54 Aligned_cols=114 Identities=20% Similarity=0.296 Sum_probs=69.2
Q ss_pred CEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHCCEEEEEEEEEEEECCCCCEEEEEEEECCCCCH
Q ss_conf 31799980138987788999999829805444431130586779871950523279999743788438999961787300
Q gi|254780321|r 11 IRNFSIVAHIDHGKSTLADRFIQHCRGLTEREMSSQVLDNMDIERERGITIKAQTVRLNYTSTDAKDYQLNLIDTPGHVD 90 (606)
Q Consensus 11 IRN~~IiaHvDhGKTTL~d~lL~~tg~i~~~~~~~~vlD~~~~EreRGITIka~~~~~~~~~~~~~~y~iNlIDTPGH~D 90 (606)
-| +-+.||--+|||+..- .+-.. |. -.+++=+|---.||- ..++-.+ -+ +..+|-||..|
T Consensus 28 p~-ilLMG~rRsGKsSI~K-------VVFhk-Ms--PneTlflESTski~~--d~is~sf-----in--f~v~dfPGQ~~ 87 (347)
T KOG3887 28 PR-ILLMGLRRSGKSSIQK-------VVFHK-MS--PNETLFLESTSKITR--DHISNSF-----IN--FQVWDFPGQMD 87 (347)
T ss_pred CE-EEEEEECCCCCCHHHH-------EEEEC-CC--CCCEEEEECCCCCCH--HHHHHHH-----CC--EEEEECCCCCC
T ss_conf 65-8997301047320031-------12332-69--874367642575337--6653320-----34--37751588656
Q ss_pred H---HHHHHHHHHHCCEEEEEEECCCC-CCHHHHHHHHHHHHC----CCCEEEEECCCCCCC
Q ss_conf 2---79999999730268999986878-865589999999970----996799832678875
Q gi|254780321|r 91 F---TYEVSRSLSACEGSLLVVDATQG-VEAQTLANVYQAIDN----NHEIITVLNKADLPS 144 (606)
Q Consensus 91 F---~~EV~r~l~a~dgaiLvVdA~~G-vq~QT~~~~~~A~~~----~l~~I~viNKiD~~~ 144 (606)
| ++.-++..+.|.+-+.||||.+- .+|-|+-|...+... ++.+=++|.|.|--+
T Consensus 88 ~Fd~s~D~e~iF~~~gALifvIDaQddy~eala~L~~~v~raykvNp~in~EVfiHKvDGLs 149 (347)
T KOG3887 88 FFDPSFDYEMIFRGVGALIFVIDAQDDYMEALARLHMTVERAYKVNPNINFEVFIHKVDGLS 149 (347)
T ss_pred CCCCCCCHHHHHHCCCEEEEEEECHHHHHHHHHHHHHHHHHEEECCCCCEEEEEEEECCCCC
T ss_conf 67876588998741474999993658899999999987653055179844999997346775
No 418
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=93.13 E-value=0.57 Score=25.99 Aligned_cols=100 Identities=18% Similarity=0.114 Sum_probs=47.6
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCC-----CEEECCCHHHHHHCCEEEEEEEEEEEECCCCCEEEEEEEECC
Q ss_conf 179998013898778899999982980544443-----113058677987195052327999974378843899996178
Q gi|254780321|r 12 RNFSIVAHIDHGKSTLADRFIQHCRGLTEREMS-----SQVLDNMDIERERGITIKAQTVRLNYTSTDAKDYQLNLIDTP 86 (606)
Q Consensus 12 RN~~IiaHvDhGKTTL~d~lL~~tg~i~~~~~~-----~~vlD~~~~EreRGITIka~~~~~~~~~~~~~~y~iNlIDTP 86 (606)
..+||+|..++|||||...|+ |-....+.. .-+-++...+..+.|..-.|...+... . -.=|+
T Consensus 29 ~~vaIvG~sGsGKSTLl~ll~---gl~~p~~G~i~i~g~~~~~~~~~~~~~~i~~v~Q~~~lf~~-t----i~eNi---- 96 (173)
T cd03246 29 ESLAIIGPSGSGKSTLARLIL---GLLRPTSGRVRLDGADISQWDPNELGDHVGYLPQDDELFSG-S----IAENI---- 96 (173)
T ss_pred CEEEEECCCCCHHHHHHHHHH---CCCCCCCCEEEECCEECCCCCHHHHHCCEEEEECCCEECCC-C----HHHHC----
T ss_conf 999999999980999999996---66667999899999993328998984208999088836777-5----89976----
Q ss_pred CCCHHHHHHHH-----HHHHCCEE-EEEEECCCCCCHHHHHHHHHHH
Q ss_conf 73002799999-----99730268-9999868788655899999999
Q gi|254780321|r 87 GHVDFTYEVSR-----SLSACEGS-LLVVDATQGVEAQTLANVYQAI 127 (606)
Q Consensus 87 GH~DF~~EV~r-----~l~a~dga-iLvVdA~~Gvq~QT~~~~~~A~ 127 (606)
=-+||--| +|.. +.- +++=+++.+.-++|...++.++
T Consensus 97 ---LSGGQkQRvalARal~~-~p~ililDEpts~LD~~~e~~i~~~l 139 (173)
T cd03246 97 ---LSGGQRQRLGLARALYG-NPRILVLDEPNSHLDVEGERALNQAI 139 (173)
T ss_pred ---CCHHHHHHHHHHHHHHC-CCCEEEEECCCCCCCHHHHHHHHHHH
T ss_conf ---76999999999999827-99999996876689989999999999
No 419
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB; InterPro: IPR014149 This entry represents TrbB, a protein, which is encoded in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer . TrbB is a homologue of the vir system VirB11 ATPase , and the Flp pilus system ATPase TadA ..
Probab=92.89 E-value=0.08 Score=31.73 Aligned_cols=22 Identities=27% Similarity=0.504 Sum_probs=10.9
Q ss_pred HHHHHHCCCCCCHHHHHHHHHH
Q ss_conf 0011100223200678776321
Q gi|254780321|r 166 LLVSAKTGEGIPLLLERIVQQL 187 (606)
Q Consensus 166 i~vSAktG~GV~~LLd~Iv~~i 187 (606)
+.+|+=||-|=..|-+|++..|
T Consensus 142 Ilv~GGTGSGKTTLaNAlla~I 163 (315)
T TIGR02782 142 ILVVGGTGSGKTTLANALLAEI 163 (315)
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 8998145885799999999988
No 420
>pfam06431 Polyoma_lg_T_C Polyomavirus large T antigen C-terminus.
Probab=92.78 E-value=0.12 Score=30.53 Aligned_cols=18 Identities=6% Similarity=0.128 Sum_probs=8.9
Q ss_pred CCCCCHHHHHHHHHHHHH
Q ss_conf 321133888775553223
Q gi|254780321|r 145 ADPDRVKKQIEETIGIST 162 (606)
Q Consensus 145 A~~e~v~~ei~~~~g~~~ 162 (606)
.++..+.+.+.++||...
T Consensus 99 eRf~~~l~~md~~~~~~g 116 (417)
T pfam06431 99 ERFNDLLDKMDLIFGAHG 116 (417)
T ss_pred HHHHHHHHHHHHHHCCCC
T ss_conf 999999999999864787
No 421
>pfam09547 Spore_IV_A Stage IV sporulation protein A (spore_IV_A). SpoIVA is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=92.47 E-value=0.86 Score=24.79 Aligned_cols=169 Identities=24% Similarity=0.363 Sum_probs=86.0
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCC---CCCCCEEECCCHHHHHHCCEEE--------EEEEEEEEECCCCCEEEEE
Q ss_conf 7999801389877889999998298054---4443113058677987195052--------3279999743788438999
Q gi|254780321|r 13 NFSIVAHIDHGKSTLADRFIQHCRGLTE---REMSSQVLDNMDIERERGITIK--------AQTVRLNYTSTDAKDYQLN 81 (606)
Q Consensus 13 N~~IiaHvDhGKTTL~d~lL~~tg~i~~---~~~~~~vlD~~~~EreRGITIk--------a~~~~~~~~~~~~~~y~iN 81 (606)
-++++|-|-.||||..-|+++.. .+.. .-.+++..|-+|.- --|-||. ..++.+.. .++-+.++-
T Consensus 19 YiGVVGPVRTGKSTFIKrFMe~~-VlPnI~~~~~keRa~DELPQS-~aGktIMTTEPKFVP~eAv~I~l--~~~~~~kVR 94 (492)
T pfam09547 19 YIGVVGPVRTGKSTFIKRFMELL-VLPNIENEYKKERAKDELPQS-GSGKTIMTTEPKFVPNEAVEIKL--DDGLKFKVR 94 (492)
T ss_pred EEEEECCCCCCCHHHHHHHHHHH-CCCCCCCHHHHHHHHCCCCCC-CCCCCEECCCCCCCCCCCEEEEE--CCCCEEEEE
T ss_conf 99962672067366999999985-468889877877643037767-89981333688766531048883--698448999
Q ss_pred EEECCCCCH-------------------HHHHHHHHHHHC--------C-EEEEEEECCCC----------CCHHHHHHH
Q ss_conf 961787300-------------------279999999730--------2-68999986878----------865589999
Q gi|254780321|r 82 LIDTPGHVD-------------------FTYEVSRSLSAC--------E-GSLLVVDATQG----------VEAQTLANV 123 (606)
Q Consensus 82 lIDTPGH~D-------------------F~~EV~r~l~a~--------d-gaiLvVdA~~G----------vq~QT~~~~ 123 (606)
||||=||.= |-+|+-=..+|- | +-+=+|=-++| ++|.-+ +.
T Consensus 95 LiDCVGY~V~gA~Gy~e~~~~RmV~TPWfd~eIPF~eAAeiGT~KVI~dHSTIGiVVTTDGSi~dIpRe~Y~eAEer-vI 173 (492)
T pfam09547 95 LVDCVGYIVEGALGYEEEDGPRMVKTPWFDEEIPFEEAAEIGTRKVITEHSTIGLVVTTDGSITDIPRENYVEAEER-VI 173 (492)
T ss_pred EEEECCEEECCCCCCCCCCCCEEECCCCCCCCCCHHHHHHHCCCCEECCCCCEEEEEECCCCCCCCCHHHHHHHHHH-HH
T ss_conf 99652567557555546897513048987888786888764654133157714499956887567664442357999-99
Q ss_pred HHHHHCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH--HHCCCCCCHHHHHHHHHHHC
Q ss_conf 9999709967998326788753211338887755532232100011--10022320067877632100
Q gi|254780321|r 124 YQAIDNNHEIITVLNKADLPSADPDRVKKQIEETIGISTEDALLVS--AKTGEGIPLLLERIVQQLPS 189 (606)
Q Consensus 124 ~~A~~~~l~~I~viNKiD~~~A~~e~v~~ei~~~~g~~~~~ii~vS--AktG~GV~~LLd~Iv~~iP~ 189 (606)
.-..+.|-|.|+++|-.+--+.+.....+++++..+.. +++++ -.+-..|..+|+.+.-.+|-
T Consensus 174 ~ELk~i~KPFiillNs~~P~s~et~~L~~eL~ekY~v~---Vl~vnc~~m~~~DI~~Il~~vLyEFPV 238 (492)
T pfam09547 174 EELKEIGKPFIILLNSQRPYSEETKELRDELEEKYDVP---VLPVNCAQMTEEDITEILEEVLYEFPV 238 (492)
T ss_pred HHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCC---EEEEEHHHCCHHHHHHHHHHHHHCCCC
T ss_conf 99997099889998389989989999999999985995---799677975999999999998633882
No 422
>PRK08118 topology modulation protein; Reviewed
Probab=92.44 E-value=0.13 Score=30.35 Aligned_cols=26 Identities=23% Similarity=0.264 Sum_probs=22.1
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHCCC
Q ss_conf 17999801389877889999998298
Q gi|254780321|r 12 RNFSIVAHIDHGKSTLADRFIQHCRG 37 (606)
Q Consensus 12 RN~~IiaHvDhGKTTL~d~lL~~tg~ 37 (606)
+-|.|||-.++|||||+-+|=..+|.
T Consensus 2 ~rI~IiG~~GsGKSTlAr~L~~~~~i 27 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLNI 27 (167)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHCC
T ss_conf 67999889998799999999998896
No 423
>TIGR01007 eps_fam capsular exopolysaccharide family; InterPro: IPR005702 This family describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis (EPS). At least 13 genes EpsA to EpsM in streptococcus species seem to direct the EPS proteins and share high homology. ; GO: 0030234 enzyme regulator activity, 0045227 capsule polysaccharide biosynthetic process.
Probab=92.34 E-value=0.53 Score=26.22 Aligned_cols=58 Identities=29% Similarity=0.389 Sum_probs=36.3
Q ss_pred EEEEECCCCCHHHHHHHHH--HHHCCEEEEEEECCCCCCHHHHHHHHHHHH----CCCCEE-EEECCCCCCC
Q ss_conf 9996178730027999999--973026899998687886558999999997----099679-9832678875
Q gi|254780321|r 80 LNLIDTPGHVDFTYEVSRS--LSACEGSLLVVDATQGVEAQTLANVYQAID----NNHEII-TVLNKADLPS 144 (606)
Q Consensus 80 iNlIDTPGH~DF~~EV~r~--l~a~dgaiLvVdA~~Gvq~QT~~~~~~A~~----~~l~~I-~viNKiD~~~ 144 (606)
+=+||||==-=+ +-.+ -+.||+.|||++|-+==. ....+|++ .|-+++ +|+||+|...
T Consensus 133 ~iiiDTPPig~V---~DAai~a~~~d~~~LV~~A~~~~k----~~v~KAK~~LEq~G~~~LGvvLNK~d~s~ 197 (207)
T TIGR01007 133 YIIIDTPPIGTV---IDAAIIARAVDASILVTDAGKIKK----REVKKAKEQLEQAGSKFLGVVLNKVDISV 197 (207)
T ss_pred EEEEEECCCCHH---HHHHHHHHHHCCEEEEEECCCCCH----HHHHHHHHHHHHHCCCEEEEEECCCCCCC
T ss_conf 899951886667---889999987297798872253264----67899999998617841158888825765
No 424
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=92.09 E-value=0.41 Score=26.96 Aligned_cols=34 Identities=18% Similarity=0.206 Sum_probs=21.4
Q ss_pred EEEEECCHHHHHHHHHHHHHHCCCEEEEECCCCC
Q ss_conf 2899637678988898886644950697378233
Q gi|254780321|r 347 FRCGFLGLLHLEIIQERLEREFSLNLIGTSPSVV 380 (606)
Q Consensus 347 fr~gglG~LHLeVi~eRL~rEfg~ev~~t~P~V~ 380 (606)
+|+-|.|+.--+=++.++-|+||+++-+-.-++.
T Consensus 266 ~rl~f~g~~~~~plis~~~~~~~v~~nIl~G~I~ 299 (339)
T COG1135 266 LRLTFTGESADQPLLSEVARRFGVDVNILSGNID 299 (339)
T ss_pred EEEEECCCCCCCHHHHHHHHHHCCCEEEEECCHH
T ss_conf 9999557521104899999985972589851335
No 425
>pfam04295 GD_AH_C D-galactarate dehydratase / Altronate hydrolase, C terminus. Family members include the C termini of D-galactarate dehydratase (EC:4.2.1.42) which is thought to catalyse the reaction D-galactarate = 5-keto-4-deoxy-D-glucarate + H2O, and altronate hydrolase (altronic acid hydratase, EC:4.2.1.7), which catalyses D-altronate = 2-keto-2-deoxygluconate + H2O. As purified, both enzymes are catalytically inactive in the absence of added Fe2+, Mn2+, and beta-mercaptoethanol. Synergistic activation of altronate hydrolase activity is seen in the presence of both iron and manganese ions, suggesting that the enzyme may have two ion binding sites. Mn2+ appears to be part of the enzyme active centre, but the function of the single bound Fe2+ ion is unknown. The hydratase has no Fe-S core.
Probab=92.00 E-value=0.33 Score=27.63 Aligned_cols=45 Identities=18% Similarity=0.279 Sum_probs=21.6
Q ss_pred HHHHHHHC-----CEEEEEEE-CCCCCCHHHHHHHHHHHHCCCCEEEEECCCC
Q ss_conf 99999730-----26899998-6878865589999999970996799832678
Q gi|254780321|r 95 VSRSLSAC-----EGSLLVVD-ATQGVEAQTLANVYQAIDNNHEIITVLNKAD 141 (606)
Q Consensus 95 V~r~l~a~-----dgaiLvVd-A~~Gvq~QT~~~~~~A~~~~l~~I~viNKiD 141 (606)
..|.|... =|++|||. +.+..|++-... ...+.+.+++-+++=.+
T Consensus 69 ~~r~L~g~~~hPNv~gvlvvgLGCE~~~~~~l~~--~i~~~~~kpv~~~~iQ~ 119 (393)
T pfam04295 69 LRRTLAGYARHPNVAGVLVVGLGCENNQIERLAE--AIGETGGKPVEFLTIQE 119 (393)
T ss_pred HHHHHHHHCCCCCCEEEEEEECCCCCCCHHHHHH--HHHHHCCCCEEEEEEEC
T ss_conf 9999998623986106999954776466999999--88751899626999972
No 426
>PRK07261 topology modulation protein; Provisional
Probab=91.63 E-value=0.18 Score=29.33 Aligned_cols=24 Identities=38% Similarity=0.376 Sum_probs=20.9
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCC
Q ss_conf 999801389877889999998298
Q gi|254780321|r 14 FSIVAHIDHGKSTLADRFIQHCRG 37 (606)
Q Consensus 14 ~~IiaHvDhGKTTL~d~lL~~tg~ 37 (606)
|.|||-.++||||||-+|=..+|.
T Consensus 3 I~IiG~sGsGKSTlAr~L~~~~~i 26 (171)
T PRK07261 3 IAIIGYSGSGKSTLARFLGQHYNC 26 (171)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCC
T ss_conf 999889998689999999998797
No 427
>KOG0393 consensus
Probab=91.53 E-value=0.71 Score=25.37 Aligned_cols=155 Identities=26% Similarity=0.328 Sum_probs=87.2
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHCCEEEEEEEEEEEECCCCCEEEEEEEECCCCCHH
Q ss_conf 17999801389877889999998298054444311305867798719505232799997437884389999617873002
Q gi|254780321|r 12 RNFSIVAHIDHGKSTLADRFIQHCRGLTEREMSSQVLDNMDIERERGITIKAQTVRLNYTSTDAKDYQLNLIDTPGHVDF 91 (606)
Q Consensus 12 RN~~IiaHvDhGKTTL~d~lL~~tg~i~~~~~~~~vlD~~~~EreRGITIka~~~~~~~~~~~~~~y~iNlIDTPGH~DF 91 (606)
+-..|+|-...|||.|. +.+.++.+...- .-+|-|.- +.++.+ .+++.+.++|-||-|..||
T Consensus 5 ~K~VvVGDga~GKT~ll--~~~t~~~fp~~y-vPTVFdny-----------s~~v~V----~dg~~v~L~LwDTAGqedY 66 (198)
T KOG0393 5 IKCVVVGDGAVGKTCLL--ISYTTNAFPEEY-VPTVFDNY-----------SANVTV----DDGKPVELGLWDTAGQEDY 66 (198)
T ss_pred EEEEEECCCCCCCEEEE--EEECCCCCCCCC-CCEEECCC-----------EEEEEE----CCCCEEEEEEEECCCCCCC
T ss_conf 69999898876745889--884357686654-56387562-----------389996----4897899863314797301
Q ss_pred HHHHHHHHHHCCEEEEEEECCCCCCHHHHHHH----HHHHH---CCCCEEEEECCCCCCCCCCCCHHHHHHH----HH--
Q ss_conf 79999999730268999986878865589999----99997---0996799832678875321133888775----55--
Q gi|254780321|r 92 TYEVSRSLSACEGSLLVVDATQGVEAQTLANV----YQAID---NNHEIITVLNKADLPSADPDRVKKQIEE----TI-- 158 (606)
Q Consensus 92 ~~EV~r~l~a~dgaiLvVdA~~Gvq~QT~~~~----~~A~~---~~l~~I~viNKiD~~~A~~e~v~~ei~~----~~-- 158 (606)
-. -|-|+--+.-++++. -.=+-+++.++. .--.. .+.|+|.|=.|.|+. .|+ ...+++.. .+
T Consensus 67 Dr--lRplsY~~tdvfl~c-fsv~~p~S~~nv~~kW~pEi~~~cp~vpiiLVGtk~DLr-~d~-~~~~~l~~~~~~~Vt~ 141 (198)
T KOG0393 67 DR--LRPLSYPQTDVFLLC-FSVVSPESFENVKSKWIPEIKHHCPNVPIILVGTKADLR-DDP-STLEKLQRQGLEPVTY 141 (198)
T ss_pred CC--CCCCCCCCCCEEEEE-EECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEHHHHH-HCH-HHHHHHHHCCCCCCCH
T ss_conf 13--363677888889999-876982668887751068899638999889982127765-387-8899987465786567
Q ss_pred --------HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHC
Q ss_conf --------3223210001110022320067877632100
Q gi|254780321|r 159 --------GISTEDALLVSAKTGEGIPLLLERIVQQLPS 189 (606)
Q Consensus 159 --------g~~~~~ii~vSAktG~GV~~LLd~Iv~~iP~ 189 (606)
.+-+-..+.|||++..|+.++++.-+...-.
T Consensus 142 ~~g~~lA~~iga~~y~EcSa~tq~~v~~vF~~a~~~~l~ 180 (198)
T KOG0393 142 EQGLELAKEIGAVKYLECSALTQKGVKEVFDEAIRAALR 180 (198)
T ss_pred HHHHHHHHHHCCCEEEEEHHHHHCCCHHHHHHHHHHHHC
T ss_conf 899999998595112320175637718889999999845
No 428
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=91.39 E-value=1.1 Score=24.01 Aligned_cols=121 Identities=22% Similarity=0.264 Sum_probs=57.4
Q ss_pred EECCCCCCHHHHHHHHHHHCCCC----CCCCCCCEEECCCHHHHHHCCEEEE--E---EEEEEE-------------ECC
Q ss_conf 98013898778899999982980----5444431130586779871950523--2---799997-------------437
Q gi|254780321|r 16 IVAHIDHGKSTLADRFIQHCRGL----TEREMSSQVLDNMDIERERGITIKA--Q---TVRLNY-------------TST 73 (606)
Q Consensus 16 IiaHvDhGKTTL~d~lL~~tg~i----~~~~~~~~vlD~~~~EreRGITIka--~---~~~~~~-------------~~~ 73 (606)
|-|--++|||||.-++|.....- --++.++--.|..=++. ++..+.. . .|++.- ...
T Consensus 5 itGFLGaGKTTll~~lL~~~~~~~~avIvNEfG~~~ID~~ll~~-~~~~v~el~~GCiCCs~~~dl~~~l~~l~~~~~~~ 83 (158)
T cd03112 5 LTGFLGAGKTTLLNHILTEQHGRKIAVIENEFGEVGIDNQLVVD-TDEEIIEMNNGCICCTVRGDLIRALLDLLERLDAG 83 (158)
T ss_pred EEECCCCCHHHHHHHHHHCCCCCCEEEEEECCCCCCCCHHHHHC-CCCEEEEECCCEEEEECCCHHHHHHHHHHHHHHCC
T ss_conf 98488899999999998478899779997076554631667637-88249993387146522515899999999976515
Q ss_pred CCC-EEEEEEEECCCCCHHHHHHHHH------HH---HCCEEEEEEECCCCCCHHHHHHHHHHHH-CCCCEEEEECCCCC
Q ss_conf 884-3899996178730027999999------97---3026899998687886558999999997-09967998326788
Q gi|254780321|r 74 DAK-DYQLNLIDTPGHVDFTYEVSRS------LS---ACEGSLLVVDATQGVEAQTLANVYQAID-NNHEIITVLNKADL 142 (606)
Q Consensus 74 ~~~-~y~iNlIDTPGH~DF~~EV~r~------l~---a~dgaiLvVdA~~Gvq~QT~~~~~~A~~-~~l~~I~viNKiD~ 142 (606)
+.+ ++ =+|-|-|-+|=.. +.++ ++ ..++.+-||||....+.-- ....+.+ ...-=++++||.|+
T Consensus 84 ~~~~d~--iiIE~SGla~P~~-i~~~~~~~~~l~~~~~l~~vi~vVDa~~~~~~~~--~~~~~~~Qi~~AD~ivlnK~DL 158 (158)
T cd03112 84 KIAFDR--IVIETTGLADPGP-VAQTFFMDEELAERYLLDGVITLVDAKHANQHLD--QQTEAQSQIAFADRILLNKTDL 158 (158)
T ss_pred CCCCCE--EEEECCCCCCCHH-HHHHHHCCHHHHCEEECCCEEEEECHHHHHHHHH--CCHHHHHHHHHCCEEEEECCCC
T ss_conf 788788--9996368788289-9998860714321074387699981898776432--4469999999689999966779
No 429
>pfam00448 SRP54 SRP54-type protein, GTPase domain. This family includes relatives of the G-domain of the SRP54 family of proteins.
Probab=91.31 E-value=1.2 Score=23.94 Aligned_cols=154 Identities=23% Similarity=0.255 Sum_probs=69.1
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCE--EECCC---HHHHHH------CCEEEEE-----EEEEEEEC---C
Q ss_conf 7999801389877889999998298054444311--30586---779871------9505232-----79999743---7
Q gi|254780321|r 13 NFSIVAHIDHGKSTLADRFIQHCRGLTEREMSSQ--VLDNM---DIERER------GITIKAQ-----TVRLNYTS---T 73 (606)
Q Consensus 13 N~~IiaHvDhGKTTL~d~lL~~tg~i~~~~~~~~--vlD~~---~~EreR------GITIka~-----~~~~~~~~---~ 73 (606)
=|+++|--+.||||.+-+|-.... .+..+-. -+|+. ..|+=+ |+.+... .+.+.+.. .
T Consensus 3 vi~lvGptGvGKTTTiaKLAa~~~---~~~~~V~lit~Dt~R~gA~eQL~~ya~~l~v~~~~~~~~~d~~~~~~~~l~~~ 79 (196)
T pfam00448 3 VILLVGLQGSGKTTTIAKLAAYLK---KQGKKVLLVAADTFRAAAIEQLKQLAERLGVPVFGSGTGSDPAAVAFDAVEKA 79 (196)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH---HCCCEEEEEECCCCCHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHH
T ss_conf 999989999988999999999999---77992899975877688999999999863981781487778789999999998
Q ss_pred CCCEEEEEEEECCCC--CHH--HHHHHHHHHH--CCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCC
Q ss_conf 884389999617873--002--7999999973--0268999986878865589999999970996799832678875321
Q gi|254780321|r 74 DAKDYQLNLIDTPGH--VDF--TYEVSRSLSA--CEGSLLVVDATQGVEAQTLANVYQAIDNNHEIITVLNKADLPSADP 147 (606)
Q Consensus 74 ~~~~y~iNlIDTPGH--~DF--~~EV~r~l~a--~dgaiLvVdA~~Gvq~QT~~~~~~A~~~~l~~I~viNKiD~~~A~~ 147 (606)
..++|.+=||||||. .|- ..|...-+.+ .+-.+||+||+.|.+..... .......++.- ++++|+|- .+.+
T Consensus 80 ~~~~~D~IlIDTaGr~~~d~~~~~el~~~~~~~~~~~~~LVl~a~~~~~~~~~~-~~f~~~~~~~~-~I~TKlDe-t~~~ 156 (196)
T pfam00448 80 KAENYDVVLVDTAGRLQNDKNLMDELKKIKRVIAPDEVLLVLDATTGQNALNQA-KAFNEAVGITG-VILTKLDG-DAKG 156 (196)
T ss_pred HHCCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHH-HHHHHHCCCCC-EEEEEECC-CCCC
T ss_conf 846899999989998747677899999998522873028998567782137899-98760047762-68884057-8875
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHH-CCCCCCHH
Q ss_conf 133888775553223210001110-02232006
Q gi|254780321|r 148 DRVKKQIEETIGISTEDALLVSAK-TGEGIPLL 179 (606)
Q Consensus 148 e~v~~ei~~~~g~~~~~ii~vSAk-tG~GV~~L 179 (606)
-.+.. +-..--+|+|.. +|.+|++|
T Consensus 157 G~~l~-------~~~~~~~Pi~~~t~Gq~v~Dl 182 (196)
T pfam00448 157 GAALS-------IAAETGKPIKFIGVGEKIDDL 182 (196)
T ss_pred CHHHH-------HHHHHCCCEEEEECCCCHHHC
T ss_conf 29998-------999989697999679981206
No 430
>CHL00175 minD septum-site determining protein; Validated
Probab=91.30 E-value=0.84 Score=24.88 Aligned_cols=64 Identities=16% Similarity=0.201 Sum_probs=30.9
Q ss_pred CEEEEEEEECCCCCHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCC-EEEEECCCC
Q ss_conf 438999961787300279999999730268999986878865589999999970996-799832678
Q gi|254780321|r 76 KDYQLNLIDTPGHVDFTYEVSRSLSACEGSLLVVDATQGVEAQTLANVYQAIDNNHE-IITVLNKAD 141 (606)
Q Consensus 76 ~~y~iNlIDTPGH~DF~~EV~r~l~a~dgaiLvVdA~~Gvq~QT~~~~~~A~~~~l~-~I~viNKiD 141 (606)
++|-+=|||||...+ ..+..+|.++|.+|+|+....--...+..........+++ +=+++|++.
T Consensus 123 ~~yDyiiID~ppgl~--~~~~~al~aad~viIvttpe~~al~da~~~i~~~~~~~~~~~~lvvN~~~ 187 (279)
T CHL00175 123 RNYDYILIDCPAGID--VGFINAIAPAKEAIVVTTPEITAIRDADRVAGLLEANGIYNIKLLVNRVR 187 (279)
T ss_pred CCCCEEEECCCCCCC--HHHHHHHHHCCEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCEEEECCCC
T ss_conf 799999981899888--99999999789069978997899999999999999759986213533564
No 431
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=91.20 E-value=0.68 Score=25.48 Aligned_cols=27 Identities=26% Similarity=0.279 Sum_probs=22.0
Q ss_pred EEEEECCCCCCHHHHHHHHHHHC-CCCC
Q ss_conf 79998013898778899999982-9805
Q gi|254780321|r 13 NFSIVAHIDHGKSTLADRFIQHC-RGLT 39 (606)
Q Consensus 13 N~~IiaHvDhGKTTL~d~lL~~t-g~i~ 39 (606)
=|+|.|--++||||+.|+|.|.. |..+
T Consensus 32 LFlI~G~TGAGKSTIlDAItfALYG~~~ 59 (1047)
T PRK10246 32 LFAITGPTGAGKTTLLDAICLALYHETP 59 (1047)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCCC
T ss_conf 7888899999889999999999589988
No 432
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein; InterPro: IPR011924 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This entry represents LolD, a member of the ABC transporter family. LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on the residue immediately following the modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. Excluded from this entry are homologs from the archaeal genus Methanosarcina .; GO: 0005524 ATP binding, 0006810 transport, 0016020 membrane.
Probab=90.90 E-value=0.18 Score=29.28 Aligned_cols=29 Identities=31% Similarity=0.369 Sum_probs=23.7
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 799980138987788999999829805444431
Q gi|254780321|r 13 NFSIVAHIDHGKSTLADRFIQHCRGLTEREMSS 45 (606)
Q Consensus 13 N~~IiaHvDhGKTTL~d~lL~~tg~i~~~~~~~ 45 (606)
-++|||-.++||||| |+.-|+.+....++
T Consensus 33 ~~~IvG~SGSGKSTL----LHlLGGLD~PT~G~ 61 (221)
T TIGR02211 33 IVAIVGSSGSGKSTL----LHLLGGLDNPTSGE 61 (221)
T ss_pred EEEEECCCCCCHHHH----HHHHHCCCCCCCCE
T ss_conf 379873678716899----99873068996315
No 433
>PRK13947 shikimate kinase; Provisional
Probab=90.84 E-value=0.37 Score=27.24 Aligned_cols=143 Identities=20% Similarity=0.294 Sum_probs=68.3
Q ss_pred CEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCH-HHHHHCCEEEEEEEEEEEECCCCCEEEEEEEECCCCC
Q ss_conf 317999801389877889999998298054444311305867-7987195052327999974378843899996178730
Q gi|254780321|r 11 IRNFSIVAHIDHGKSTLADRFIQHCRGLTEREMSSQVLDNMD-IERERGITIKAQTVRLNYTSTDAKDYQLNLIDTPGHV 89 (606)
Q Consensus 11 IRN~~IiaHvDhGKTTL~d~lL~~tg~i~~~~~~~~vlD~~~-~EreRGITIka~~~~~~~~~~~~~~y~iNlIDTPGH~ 89 (606)
.|||.+||.-++||||+.-+|-...+ -.+.|.++ +|+.-|.||. - +...=|-.
T Consensus 1 mknI~LiG~mGsGKTtiGk~La~~L~--------~~fiD~D~~Ie~~~g~sI~-----e-------------If~~~GE~ 54 (171)
T PRK13947 1 MKNIVLIGFMGTGKTTVGKKVATTLS--------FGFIDTDKEIEKMAGMTVS-----E-------------IFEKDGEV 54 (171)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHHC--------CCEEECHHHHHHHCCCCHH-----H-------------HHHHHCHH
T ss_conf 98589979999988999999999979--------6989874999988299889-----9-------------99984899
Q ss_pred HHHHHHHHHHH---HCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEC------------CCCCCCCCCCCHHHHH
Q ss_conf 02799999997---30268999986878865589999999970996799832------------6788753211338887
Q gi|254780321|r 90 DFTYEVSRSLS---ACEGSLLVVDATQGVEAQTLANVYQAIDNNHEIITVLN------------KADLPSADPDRVKKQI 154 (606)
Q Consensus 90 DF~~EV~r~l~---a~dgaiLvVdA~~Gvq~QT~~~~~~A~~~~l~~I~viN------------KiD~~~A~~e~v~~ei 154 (606)
-|--.=...+. ..+. .||+.--|+ +....++....+.++ ++.++ .=+||-...+...+.+
T Consensus 55 ~FR~~E~~~l~~~~~~~~--~VistGGG~-v~~~~n~~~l~~~g~--vi~L~~~~~~l~~Rl~~~~~RPll~~~~~~~~l 129 (171)
T PRK13947 55 RFRSLEKAAVRKAARLKN--LVIATGGGV-VLNPENIVQLRKNGV--LICLVARPEVILRRIKKKKDRPLLMVGNPEERI 129 (171)
T ss_pred HHHHHHHHHHHHHCCCCC--EEEECCCCC-CCCHHHHHHHHHCCE--EEEECCCHHHHHHHHHCCCCCCCCCCCCHHHHH
T ss_conf 999999999997403689--799789850-069999999996898--999739999999997289999979899879999
Q ss_pred HHHHH----HH--HHHHHHHHHHCCCCCCHHHHHHHHHH
Q ss_conf 75553----22--32100011100223200678776321
Q gi|254780321|r 155 EETIG----IS--TEDALLVSAKTGEGIPLLLERIVQQL 187 (606)
Q Consensus 155 ~~~~g----~~--~~~ii~vSAktG~GV~~LLd~Iv~~i 187 (606)
++++. +. ++-++-+ .+..++++.+.|++.+
T Consensus 130 ~~l~~~R~~~Y~~Ad~~I~~---~~~s~~ei~~~Ii~~~ 165 (171)
T PRK13947 130 RELLKEREPFYRFADFTIDT---SDMTIDEVAEEIIKAY 165 (171)
T ss_pred HHHHHHHHHHHHHCCEEEEC---CCCCHHHHHHHHHHHH
T ss_conf 99999999999976989889---9899999999999999
No 434
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=90.79 E-value=1.3 Score=23.62 Aligned_cols=14 Identities=29% Similarity=0.394 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHC
Q ss_conf 78899998886411
Q gi|254780321|r 317 ENLRTAINKLRLND 330 (606)
Q Consensus 317 ~~L~~aL~kL~~~D 330 (606)
+.|..+|.++..-|
T Consensus 277 ~~l~~al~~~~~~d 290 (412)
T PRK05703 277 KELAKALEQLANCD 290 (412)
T ss_pred HHHHHHHHHHCCCC
T ss_conf 99999998715899
No 435
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=90.79 E-value=1.1 Score=24.09 Aligned_cols=123 Identities=20% Similarity=0.155 Sum_probs=56.1
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECC-----CHH-HHHHCCEEEEEEEEEEEECCCCCEEEEEEEEC
Q ss_conf 179998013898778899999982980544443113058-----677-98719505232799997437884389999617
Q gi|254780321|r 12 RNFSIVAHIDHGKSTLADRFIQHCRGLTEREMSSQVLDN-----MDI-ERERGITIKAQTVRLNYTSTDAKDYQLNLIDT 85 (606)
Q Consensus 12 RN~~IiaHvDhGKTTL~d~lL~~tg~i~~~~~~~~vlD~-----~~~-EreRGITIka~~~~~~~~~~~~~~y~iNlIDT 85 (606)
--++|+|..++|||||...|+ |..... .+.=.+|. ++. +..+.|++-.|...+... .-+-|+ +
T Consensus 48 e~vaIvG~sGsGKSTL~~ll~---gl~~p~-~G~I~idg~di~~~~~~~lr~~i~~v~Q~~~lf~~-----Ti~~Ni--~ 116 (257)
T cd03288 48 QKVGICGRTGSGKSSLSLAFF---RMVDIF-DGKIVIDGIDISKLPLHTLRSRLSIILQDPILFSG-----SIRFNL--D 116 (257)
T ss_pred CEEEEECCCCCCHHHHHHHHH---HCCCCC-CCEEEECCEEHHHCCHHHHHHHEEEEECCCCCCCC-----HHHHCC--C
T ss_conf 999999999981999999996---056678-88899998996879999997505799456734361-----355413--7
Q ss_pred CCCCHHHHHHHHHHHHCCEEE----------EEEE----CCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCH
Q ss_conf 873002799999997302689----------9998----6878865589999999970996799832678875321133
Q gi|254780321|r 86 PGHVDFTYEVSRSLSACEGSL----------LVVD----ATQGVEAQTLANVYQAIDNNHEIITVLNKADLPSADPDRV 150 (606)
Q Consensus 86 PGH~DF~~EV~r~l~a~dgai----------LvVd----A~~Gvq~QT~~~~~~A~~~~l~~I~viNKiD~~~A~~e~v 150 (606)
|+..---.++..++..++..- -.+. .-+|-|-|-++.. .|+-.+-++++ +|-|.+..|..
T Consensus 117 ~~~~~~~~~i~~al~~~~l~~~i~~lp~gl~t~l~~~g~~LSgGQrQri~lA-RAll~~~~ili----LDEpts~LD~~ 190 (257)
T cd03288 117 PECKCTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLA-RAFVRKSSILI----MDEATASIDMA 190 (257)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCHHHHHHHHHH-HHHHCCCCEEE----EECCCCCCCHH
T ss_conf 5667689999999999623799973758985174687683699999999999-99955999999----95876678999
No 436
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=90.78 E-value=1.3 Score=23.61 Aligned_cols=127 Identities=24% Similarity=0.202 Sum_probs=64.0
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCCC----CCE-EECCCHHHHHHCCEEEEEEEEEEEECCCCCEEEEEEEECCC
Q ss_conf 7999801389877889999998298054444----311-30586779871950523279999743788438999961787
Q gi|254780321|r 13 NFSIVAHIDHGKSTLADRFIQHCRGLTEREM----SSQ-VLDNMDIERERGITIKAQTVRLNYTSTDAKDYQLNLIDTPG 87 (606)
Q Consensus 13 N~~IiaHvDhGKTTL~d~lL~~tg~i~~~~~----~~~-vlD~~~~EreRGITIka~~~~~~~~~~~~~~y~iNlIDTPG 87 (606)
-++|+|+.++|||||...|+ |-+...+. ..+ +.+....+..+.|++-.|...+.... .+-|+ +..+
T Consensus 36 ~v~ivG~sGsGKSTLl~ll~---g~~~p~~G~I~idg~di~~~~~~~~r~~i~~v~Q~~~lf~~t-----i~~Nl-~~~~ 106 (207)
T cd03369 36 KIGIVGRTGAGKSTLILALF---RFLEAEEGKIEIDGIDISTIPLEDLRSSLTIIPQDPTLFSGT-----IRSNL-DPFD 106 (207)
T ss_pred EEEEECCCCCCHHHHHHHHH---HHCCCCCCEEEECCEECCCCCHHHHHHHCEEEECCCEECCCC-----HHHHC-CCCC
T ss_conf 99999999987999999999---872888878999999954079999995153770356332754-----99873-8033
Q ss_pred CCHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCH-HHHHHHHH
Q ss_conf 300279999999730268999986878865589999999970996799832678875321133-88877555
Q gi|254780321|r 88 HVDFTYEVSRSLSACEGSLLVVDATQGVEAQTLANVYQAIDNNHEIITVLNKADLPSADPDRV-KKQIEETI 158 (606)
Q Consensus 88 H~DF~~EV~r~l~a~dgaiLvVdA~~Gvq~QT~~~~~~A~~~~l~~I~viNKiD~~~A~~e~v-~~ei~~~~ 158 (606)
..+ --|+..++...++.. --+|-|-|-++..+ |+-.+-++++ +|-|.+..|.. ..++.+.+
T Consensus 107 ~~~-~~~i~~~l~~~~~g~----~LSgGqkQrl~iAR-al~~~p~ili----lDEpts~LD~~~~~~i~~~i 168 (207)
T cd03369 107 EYS-DEEIYGALRVSEGGL----NLSQGQRQLLCLAR-ALLKRPRVLV----LDEATASIDYATDALIQKTI 168 (207)
T ss_pred CCC-HHHHHHHHHHCCCCC----CCCHHHHHHHHHHH-HHHCCCCEEE----EECCCCCCCHHHHHHHHHHH
T ss_conf 358-999999986047888----86989999999999-9970899999----81634448989999999999
No 437
>TIGR01842 type_I_sec_PrtD type I secretion system ATPase; InterPro: IPR010128 Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N terminus, but rather carry signals located toward the extreme C terminus to direct type I secretion.; GO: 0005524 ATP binding, 0015031 protein transport, 0016021 integral to membrane.
Probab=90.69 E-value=0.23 Score=28.69 Aligned_cols=70 Identities=20% Similarity=0.276 Sum_probs=45.7
Q ss_pred CCCHHHHHHHHHHHHHHHHHCCCCCC--CCCCCCCCCCEEEEEECCHHHHHHHHHHHHHHCCCEE--EEECCCCC----E
Q ss_conf 67702457889999888641122111--2567600042028996376789888988866449506--97378233----0
Q gi|254780321|r 310 PVDATQFENLRTAINKLRLNDASFSF--ELENSTALGFGFRCGFLGLLHLEIIQERLEREFSLNL--IGTSPSVV----Y 381 (606)
Q Consensus 310 p~~~~d~~~L~~aL~kL~~~D~sl~~--e~Ets~aLg~Gfr~gglG~LHLeVi~eRL~rEfg~ev--~~t~P~V~----Y 381 (606)
+-+.+. +=|=||-|-.=-||.|.+ ||++|=.- -||.=|-=.+.++|.. |.-+ ++++|++. |
T Consensus 466 ~LSGGQ--RQRIaLARAlyG~P~lvvLDEPNsNLD~--------~GE~AL~~Ai~~lK~r-g~tvv~itHRp~lL~~vDk 534 (556)
T TIGR01842 466 TLSGGQ--RQRIALARALYGDPKLVVLDEPNSNLDE--------EGEQALANAIKALKAR-GITVVVITHRPSLLGLVDK 534 (556)
T ss_pred CCCCHH--HHHHHHHHHHHCCCEEEEECCCCCCCCH--------HHHHHHHHHHHHHHHC-CCEEEEEECHHHHHHHHHH
T ss_conf 786146--8999999987179837873288987661--------7899999999999867-9728998410689999999
Q ss_pred EEEEECCCE
Q ss_conf 335315645
Q gi|254780321|r 382 ELYMHDGSM 390 (606)
Q Consensus 382 kv~~~dG~~ 390 (606)
=..+.||..
T Consensus 535 Il~l~dG~~ 543 (556)
T TIGR01842 535 ILVLQDGRL 543 (556)
T ss_pred HHHHHCCHH
T ss_conf 999840716
No 438
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=90.69 E-value=0.46 Score=26.65 Aligned_cols=24 Identities=25% Similarity=0.340 Sum_probs=18.8
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCC
Q ss_conf 999801389877889999998298054
Q gi|254780321|r 14 FSIVAHIDHGKSTLADRFIQHCRGLTE 40 (606)
Q Consensus 14 ~~IiaHvDhGKTTL~d~lL~~tg~i~~ 40 (606)
++|+|+-++|||||...| +|.+..
T Consensus 29 ~~iiG~nGaGKSTLl~~i---~Gl~~p 52 (205)
T cd03226 29 IALTGKNGAGKTTLAKIL---AGLIKE 52 (205)
T ss_pred EEEECCCCCCHHHHHHHH---HCCCCC
T ss_conf 999889999899999999---568577
No 439
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=90.63 E-value=0.31 Score=27.81 Aligned_cols=25 Identities=28% Similarity=0.381 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCC
Q ss_conf 7999801389877889999998298054
Q gi|254780321|r 13 NFSIVAHIDHGKSTLADRFIQHCRGLTE 40 (606)
Q Consensus 13 N~~IiaHvDhGKTTL~d~lL~~tg~i~~ 40 (606)
-+|||||-++|||||...| .|.+..
T Consensus 54 ~vaIIG~nGsGKSTL~~~l---~Gll~p 78 (320)
T PRK13631 54 IYFIIGNSGSGKSTLVTHF---NGLIKS 78 (320)
T ss_pred EEEEECCCCCCHHHHHHHH---HCCCCC
T ss_conf 9999949998499999999---758889
No 440
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=90.38 E-value=0.75 Score=25.21 Aligned_cols=24 Identities=21% Similarity=0.120 Sum_probs=18.0
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCC
Q ss_conf 799980138987788999999829805
Q gi|254780321|r 13 NFSIVAHIDHGKSTLADRFIQHCRGLT 39 (606)
Q Consensus 13 N~~IiaHvDhGKTTL~d~lL~~tg~i~ 39 (606)
-++|+|+.++|||||.-.+ +|...
T Consensus 28 ~~~ivGpSG~GKSTllr~i---~Gl~~ 51 (178)
T cd03229 28 IVALLGPSGSGKSTLLRCI---AGLEE 51 (178)
T ss_pred EEEEECCCCCHHHHHHHHH---HCCCC
T ss_conf 9999999998399999999---85999
No 441
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=90.25 E-value=1.4 Score=23.31 Aligned_cols=12 Identities=42% Similarity=0.595 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHH
Q ss_conf 788999988864
Q gi|254780321|r 317 ENLRTAINKLRL 328 (606)
Q Consensus 317 ~~L~~aL~kL~~ 328 (606)
+.|+.+|.++..
T Consensus 243 ~eL~~aL~~l~~ 254 (404)
T PRK06995 243 ADLRLALAELRN 254 (404)
T ss_pred HHHHHHHHHHCC
T ss_conf 999999997089
No 442
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL; InterPro: IPR012701 Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three-component ABC transporter, where IPR005769 from INTERPRO is the permease, IPR005770 from INTERPRO is the phosphonates binding protein, and IPR012693 from INTERPRO is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lyase complex. This protein (PhnL) and the adjacent-encoded PhnK (IPR012700 from INTERPRO) resemble transporter ATP-binding proteins but are suggested, based on mutagenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se ..
Probab=90.21 E-value=0.23 Score=28.63 Aligned_cols=23 Identities=22% Similarity=0.138 Sum_probs=18.8
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCC
Q ss_conf 999801389877889999998298
Q gi|254780321|r 14 FSIVAHIDHGKSTLADRFIQHCRG 37 (606)
Q Consensus 14 ~~IiaHvDhGKTTL~d~lL~~tg~ 37 (606)
++++||.++|||||. |.||.+--
T Consensus 37 v~L~G~SGaGKSTlL-k~lYaNYl 59 (224)
T TIGR02324 37 VALSGPSGAGKSTLL-KSLYANYL 59 (224)
T ss_pred EEEECCCCCCHHHHH-HHHHHCCC
T ss_conf 885368887678999-97663047
No 443
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=90.16 E-value=0.35 Score=27.45 Aligned_cols=108 Identities=19% Similarity=0.102 Sum_probs=53.3
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHCCEEEEEEEEEEEECCCCCEEEEEEEECCCCCH-
Q ss_conf 1799980138987788999999829805444431130586779871950523279999743788438999961787300-
Q gi|254780321|r 12 RNFSIVAHIDHGKSTLADRFIQHCRGLTEREMSSQVLDNMDIERERGITIKAQTVRLNYTSTDAKDYQLNLIDTPGHVD- 90 (606)
Q Consensus 12 RN~~IiaHvDhGKTTL~d~lL~~tg~i~~~~~~~~vlD~~~~EreRGITIka~~~~~~~~~~~~~~y~iNlIDTPGH~D- 90 (606)
.+|.|+|..++||||++.+|-...+-. .-+..+-+-.......|.|.-++. +||..+-++
T Consensus 1 ~riiilG~pGaGK~T~A~~La~~~~i~-hlstgd~~r~~~~~~t~lg~~~k~------------------~i~~g~lv~d 61 (178)
T COG0563 1 MRILILGPPGAGKSTLAKKLAKKLGLP-HLDTGDILRAAIAERTELGEEIKK------------------YIDKGELVPD 61 (178)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHCCCC-EECCCCCCCHHHCCCCHHHHHHHH------------------HHHCCCCCCH
T ss_conf 979998999998899999999976997-855220111100323689999999------------------9875895041
Q ss_pred H--HHHHHHHHHHCCEE-EEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEC
Q ss_conf 2--79999999730268-999986878865589999999970996799832
Q gi|254780321|r 91 F--TYEVSRSLSACEGS-LLVVDATQGVEAQTLANVYQAIDNNHEIITVLN 138 (606)
Q Consensus 91 F--~~EV~r~l~a~dga-iLvVdA~~Gvq~QT~~~~~~A~~~~l~~I~viN 138 (606)
. .+-+...+..+|+. .++.|..--...|.++.-....++|.+.-.++|
T Consensus 62 ~i~~~~v~~rl~~~d~~~~~I~dg~PR~~~qa~~l~r~l~~~g~~~d~v~~ 112 (178)
T COG0563 62 EIVNGLVKERLDEADCKAGFILDGFPRTLCQARALKRLLKELGVRLDMVIE 112 (178)
T ss_pred HHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCEEEC
T ss_conf 769979999997506577299989983699999999999863998552602
No 444
>PRK06547 hypothetical protein; Provisional
Probab=90.14 E-value=0.27 Score=28.18 Aligned_cols=25 Identities=24% Similarity=0.255 Sum_probs=22.0
Q ss_pred HCEEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 5317999801389877889999998
Q gi|254780321|r 10 RIRNFSIVAHIDHGKSTLADRFIQH 34 (606)
Q Consensus 10 ~IRN~~IiaHvDhGKTTL~d~lL~~ 34 (606)
+.|-|+|=|..++|||||+.+|-..
T Consensus 14 ~~~iVaIDG~sGaGKTTLA~~La~~ 38 (184)
T PRK06547 14 DMITVLIDGRSGSGKTTLAGELAAC 38 (184)
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 7699998689988889999999974
No 445
>KOG3022 consensus
Probab=89.89 E-value=1.2 Score=23.89 Aligned_cols=26 Identities=27% Similarity=0.355 Sum_probs=14.9
Q ss_pred CCHHHCEEEEEE--CCCCCCHHHHHHHH
Q ss_conf 985253179998--01389877889999
Q gi|254780321|r 6 TPLSRIRNFSIV--AHIDHGKSTLADRF 31 (606)
Q Consensus 6 ~p~~~IRN~~Ii--aHvDhGKTTL~d~l 31 (606)
-+++.|.++-.| |-.+-||||.+-.|
T Consensus 41 ~~l~~vk~iI~VlSGKGGVGKSTvt~nl 68 (300)
T KOG3022 41 ENLSGVKHIILVLSGKGGVGKSTVTVNL 68 (300)
T ss_pred CCCCCCCEEEEEEECCCCCCHHHHHHHH
T ss_conf 3313454589998678877616899999
No 446
>TIGR02673 FtsE cell division ATP-binding protein FtsE; InterPro: IPR005286 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). FtsE is an ABC transporter ATP-binding protein. This protein and its permease partner FtsX, localize to the cell division site. In a number of species, the ftsEX gene pair is located next to ftsY, which encodes the signal recognition particle-docki ng protein.; GO: 0005524 ATP binding, 0051301 cell division.
Probab=89.79 E-value=0.23 Score=28.70 Aligned_cols=20 Identities=20% Similarity=0.318 Sum_probs=15.7
Q ss_pred EECCCCCCHHHHHHHHHHHCC
Q ss_conf 980138987788999999829
Q gi|254780321|r 16 IVAHIDHGKSTLADRFIQHCR 36 (606)
Q Consensus 16 IiaHvDhGKTTL~d~lL~~tg 36 (606)
+.||.++|||||. +||+..-
T Consensus 33 LtG~SGAGKttLL-KLl~~~~ 52 (215)
T TIGR02673 33 LTGPSGAGKTTLL-KLLYGAL 52 (215)
T ss_pred EECCCCCCHHHHH-HHHHHHC
T ss_conf 8727786178999-9998526
No 447
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=89.73 E-value=0.29 Score=27.98 Aligned_cols=46 Identities=30% Similarity=0.218 Sum_probs=30.8
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHCCCC--CCCCCCCEEECCCHHHHHH
Q ss_conf 179998013898778899999982980--5444431130586779871
Q gi|254780321|r 12 RNFSIVAHIDHGKSTLADRFIQHCRGL--TEREMSSQVLDNMDIERER 57 (606)
Q Consensus 12 RN~~IiaHvDhGKTTL~d~lL~~tg~i--~~~~~~~~vlD~~~~EreR 57 (606)
.=|+|-|-|+.|||||+.+|-...|+- -+-...+++||..=...+|
T Consensus 5 ~~IvI~G~IG~GKSTLa~~La~~l~~~~~~E~vednp~L~~FY~d~~~ 52 (216)
T COG1428 5 MVIVIEGMIGAGKSTLAQALAEHLGFKVFYELVEDNPFLDLFYEDPER 52 (216)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHCCCEEEECCCCCHHHHHHHHHHHH
T ss_conf 089984464468789999999883885022224678479999876997
No 448
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=89.32 E-value=0.97 Score=24.46 Aligned_cols=38 Identities=18% Similarity=0.133 Sum_probs=22.6
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCHHH
Q ss_conf 799980138987788999999829805444431130586779
Q gi|254780321|r 13 NFSIVAHIDHGKSTLADRFIQHCRGLTEREMSSQVLDNMDIE 54 (606)
Q Consensus 13 N~~IiaHvDhGKTTL~d~lL~~tg~i~~~~~~~~vlD~~~~E 54 (606)
-++|+|.-++|||||.-.| +|.... ..++-+.+..++.
T Consensus 40 iv~LiG~nGaGKSTLlr~i---~Gl~~p-~~G~I~~~~~~i~ 77 (257)
T PRK11247 40 FVAVVGRSGCGKSTLLRLL---AGLETP-TAGDLLAGTAPLA 77 (257)
T ss_pred EEEEECCCCCHHHHHHHHH---HCCCCC-CCCEEEECCEEHH
T ss_conf 9999989988899999999---658988-8870898987554
No 449
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=89.22 E-value=0.39 Score=27.10 Aligned_cols=25 Identities=32% Similarity=0.421 Sum_probs=18.6
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCC
Q ss_conf 7999801389877889999998298054
Q gi|254780321|r 13 NFSIVAHIDHGKSTLADRFIQHCRGLTE 40 (606)
Q Consensus 13 N~~IiaHvDhGKTTL~d~lL~~tg~i~~ 40 (606)
-++||||-++|||||. +|| +|.+..
T Consensus 55 ~vGiiG~NGaGKSTLl-kli--aGi~~P 79 (249)
T COG1134 55 RVGIIGHNGAGKSTLL-KLI--AGIYKP 79 (249)
T ss_pred EEEEECCCCCCHHHHH-HHH--HCCCCC
T ss_conf 9989878998589999-999--587179
No 450
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=89.12 E-value=0.85 Score=24.83 Aligned_cols=20 Identities=25% Similarity=0.291 Sum_probs=17.0
Q ss_pred EEEECCCCCCHHHHHHHHHH
Q ss_conf 99980138987788999999
Q gi|254780321|r 14 FSIVAHIDHGKSTLADRFIQ 33 (606)
Q Consensus 14 ~~IiaHvDhGKTTL~d~lL~ 33 (606)
.+|+|+-++|||||...++.
T Consensus 25 taivG~NGaGKSTLl~~i~~ 44 (204)
T cd03240 25 TLIVGQNGAGKTTIIEALKY 44 (204)
T ss_pred EEEECCCCCCHHHHHHHHHH
T ss_conf 99998999999999999863
No 451
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=89.08 E-value=0.38 Score=27.15 Aligned_cols=36 Identities=31% Similarity=0.411 Sum_probs=21.9
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCHH
Q ss_conf 9998013898778899999982980544443113058677
Q gi|254780321|r 14 FSIVAHIDHGKSTLADRFIQHCRGLTEREMSSQVLDNMDI 53 (606)
Q Consensus 14 ~~IiaHvDhGKTTL~d~lL~~tg~i~~~~~~~~vlD~~~~ 53 (606)
+|||||.++|||||. |++ +| +.....++=..|..++
T Consensus 32 vsilGpSGcGKSTLL-rii--AG-L~~p~~G~V~~~g~~v 67 (248)
T COG1116 32 VAILGPSGCGKSTLL-RLI--AG-LEKPTSGEVLLDGRPV 67 (248)
T ss_pred EEEECCCCCCHHHHH-HHH--HC-CCCCCCCEEEECCCCC
T ss_conf 999899978899999-999--68-7877775599888215
No 452
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=89.07 E-value=0.59 Score=25.89 Aligned_cols=25 Identities=28% Similarity=0.282 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCC
Q ss_conf 7999801389877889999998298054
Q gi|254780321|r 13 NFSIVAHIDHGKSTLADRFIQHCRGLTE 40 (606)
Q Consensus 13 N~~IiaHvDhGKTTL~d~lL~~tg~i~~ 40 (606)
-++|||.-++|||||...| +|.+..
T Consensus 30 i~~liGpNGaGKSTLlk~i---~Gl~~p 54 (257)
T PRK13548 30 VVAILGPNGAGKSTLLRAL---SGELPP 54 (257)
T ss_pred EEEEECCCCCCHHHHHHHH---HCCCCC
T ss_conf 9999999998799999998---567577
No 453
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=88.92 E-value=0.46 Score=26.62 Aligned_cols=23 Identities=26% Similarity=0.424 Sum_probs=20.3
Q ss_pred EEEECCCCCCHHHHHHHHHHHCC
Q ss_conf 99980138987788999999829
Q gi|254780321|r 14 FSIVAHIDHGKSTLADRFIQHCR 36 (606)
Q Consensus 14 ~~IiaHvDhGKTTL~d~lL~~tg 36 (606)
|+|.|..++|||||+.+|....+
T Consensus 2 IgI~G~sgsGKTT~a~~L~~~l~ 24 (198)
T cd02023 2 IGIAGGSGSGKTTVAEEIIEQLG 24 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHHHC
T ss_conf 89889998859999999999809
No 454
>pfam00485 PRK Phosphoribulokinase / Uridine kinase family. In Arabidopsis the region carries two binding domains, a phosphoribosylpyrophosphate-binding domain and, at the very C-terminus, a uracil-binding domain.
Probab=88.90 E-value=0.41 Score=26.97 Aligned_cols=23 Identities=22% Similarity=0.381 Sum_probs=20.3
Q ss_pred EEEECCCCCCHHHHHHHHHHHCC
Q ss_conf 99980138987788999999829
Q gi|254780321|r 14 FSIVAHIDHGKSTLADRFIQHCR 36 (606)
Q Consensus 14 ~~IiaHvDhGKTTL~d~lL~~tg 36 (606)
|+|-|..++||||++.+|....|
T Consensus 2 IgIaG~SgSGKTT~a~~L~~~l~ 24 (196)
T pfam00485 2 IGVAGSSGAGKTTVARTFVSIFG 24 (196)
T ss_pred EEEECCCCCCHHHHHHHHHHHHC
T ss_conf 89989985719999999999966
No 455
>PRK13946 shikimate kinase; Provisional
Probab=88.87 E-value=0.63 Score=25.69 Aligned_cols=99 Identities=24% Similarity=0.244 Sum_probs=56.9
Q ss_pred HCEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCH-HHHHHCCEEEEEEEEEEEECCCCCEEEEEEEECCCC
Q ss_conf 5317999801389877889999998298054444311305867-798719505232799997437884389999617873
Q gi|254780321|r 10 RIRNFSIVAHIDHGKSTLADRFIQHCRGLTEREMSSQVLDNMD-IERERGITIKAQTVRLNYTSTDAKDYQLNLIDTPGH 88 (606)
Q Consensus 10 ~IRN~~IiaHvDhGKTTL~d~lL~~tg~i~~~~~~~~vlD~~~-~EreRGITIka~~~~~~~~~~~~~~y~iNlIDTPGH 88 (606)
+-+||.+||.-++||||+.-.|-...|. .+.|.+. +|+.-|.+|. - +...=|.
T Consensus 19 ~kknIvLIG~mGsGKStvGk~LA~~L~~--------~fiD~D~~IE~~~g~sI~-----e-------------IF~~~GE 72 (195)
T PRK13946 19 GKRTVVLVGLMGAGKSTVGRRLATMLGL--------PFLDADTEIERAARMTIP-----E-------------IFATYGE 72 (195)
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHHHCC--------CEEECHHHHHHHHCCCHH-----H-------------HHHHHCH
T ss_conf 8995899899999889999999999797--------989885999998099899-----9-------------9998697
Q ss_pred CHHHHHHHHHHH-HCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 002799999997-3026899998687886558999999997099679983
Q gi|254780321|r 89 VDFTYEVSRSLS-ACEGSLLVVDATQGVEAQTLANVYQAIDNNHEIITVL 137 (606)
Q Consensus 89 ~DF~~EV~r~l~-a~dgaiLvVdA~~Gvq~QT~~~~~~A~~~~l~~I~vi 137 (606)
.-|--.=.+.|. .++.-=.||+.--|+-- ...++.+-.+.+ +++++
T Consensus 73 ~~FR~~E~~~l~~l~~~~~~VIstGGG~v~-~~~n~~~L~~~g--~vI~L 119 (195)
T PRK13946 73 PEFRDLERRVIARLLKGGPLVLATGGGAFM-NEETRAAIREKG--ISVWL 119 (195)
T ss_pred HHHHHHHHHHHHHHHCCCCEEEECCCCCCC-CHHHHHHHHHCC--EEEEE
T ss_conf 999998999999986489879975874236-899999999579--68998
No 456
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=88.87 E-value=0.32 Score=27.71 Aligned_cols=52 Identities=23% Similarity=0.169 Sum_probs=28.1
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCE------EECCCHHHHHHCCEEEEEEEEE
Q ss_conf 7999801389877889999998298054444311------3058677987195052327999
Q gi|254780321|r 13 NFSIVAHIDHGKSTLADRFIQHCRGLTEREMSSQ------VLDNMDIERERGITIKAQTVRL 68 (606)
Q Consensus 13 N~~IiaHvDhGKTTL~d~lL~~tg~i~~~~~~~~------vlD~~~~EreRGITIka~~~~~ 68 (606)
-+||+|+.++|||||+.-|+ |-.... .+.= +.+....+..+.|..-.|...+
T Consensus 29 ~v~ivG~sGsGKSTLl~ll~---gl~~p~-~G~I~idg~di~~~~~~~~r~~i~~v~Q~~~l 86 (236)
T cd03253 29 KVAIVGPSGSGKSTILRLLF---RFYDVS-SGSILIDGQDIREVTLDSLRRAIGVVPQDTVL 86 (236)
T ss_pred EEEEECCCCCCHHHHHHHHC---CCCCCC-CCEEEECCEECCCCCHHHHHHCEEEEECCCEE
T ss_conf 99999999998999999974---385488-74899999992318999997237899507801
No 457
>KOG0780 consensus
Probab=88.84 E-value=1.5 Score=23.13 Aligned_cols=127 Identities=17% Similarity=0.267 Sum_probs=60.1
Q ss_pred CEEE-EEECCCCCCHHHHHHHHHHHCC-------CCCCCCCCCEEECCCHHHHH-HCCEEEEEEEEEEE--------ECC
Q ss_conf 3179-9980138987788999999829-------80544443113058677987-19505232799997--------437
Q gi|254780321|r 11 IRNF-SIVAHIDHGKSTLADRFIQHCR-------GLTEREMSSQVLDNMDIERE-RGITIKAQTVRLNY--------TST 73 (606)
Q Consensus 11 IRN~-~IiaHvDhGKTTL~d~lL~~tg-------~i~~~~~~~~vlD~~~~Ere-RGITIka~~~~~~~--------~~~ 73 (606)
-.|+ -++|--+.||||.+-.|.+.-. .+...-...--.|.+..--+ -+|-+..+-+.... ..+
T Consensus 100 kpsVimfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRagAfDQLkqnA~k~~iP~ygsyte~dpv~ia~egv~~f 179 (483)
T KOG0780 100 KPSVIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRAGAFDQLKQNATKARVPFYGSYTEADPVKIASEGVDRF 179 (483)
T ss_pred CCCEEEEEECCCCCCCEEHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHCCEEEECCCCCCHHHHHHHHHHHH
T ss_conf 97089998305788630089999999846872457760224530689999876740770684036655589999999988
Q ss_pred CCCEEEEEEEECCCCCH-----H--HHHHHHHHHHCCEEEEEEECCCCC--CHHHHHHHHHHHHCCCCEEEEECCCCC
Q ss_conf 88438999961787300-----2--799999997302689999868788--655899999999709967998326788
Q gi|254780321|r 74 DAKDYQLNLIDTPGHVD-----F--TYEVSRSLSACEGSLLVVDATQGV--EAQTLANVYQAIDNNHEIITVLNKADL 142 (606)
Q Consensus 74 ~~~~y~iNlIDTPGH~D-----F--~~EV~r~l~a~dgaiLvVdA~~Gv--q~QT~~~~~~A~~~~l~~I~viNKiD~ 142 (606)
..++|-+=|+||-|-.- | --+|++++. -|-.|+|+||.-|- ++|.++ |.... ++. -+.|+|+|-
T Consensus 180 Kke~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~-Pd~vi~VmDasiGQaae~Qa~a-Fk~~v--dvg-~vIlTKlDG 252 (483)
T KOG0780 180 KKENFDVIIVDTSGRHKQEASLFEEMKQVSKAIK-PDEIIFVMDASIGQAAEAQARA-FKETV--DVG-AVILTKLDG 252 (483)
T ss_pred HHCCCCEEEEECCCCHHHHHHHHHHHHHHHHHCC-CCEEEEEEECCCCHHHHHHHHH-HHHHH--CCC-EEEEEECCC
T ss_conf 8639728998278730124899999999985159-8738999856200767999998-87761--540-379972256
No 458
>PRK13949 shikimate kinase; Provisional
Probab=88.80 E-value=1.2 Score=23.78 Aligned_cols=96 Identities=18% Similarity=0.169 Sum_probs=55.5
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCH-HHHHHCCEEEEEEEEEEEECCCCCEEEEEEEECCCCCH
Q ss_conf 17999801389877889999998298054444311305867-79871950523279999743788438999961787300
Q gi|254780321|r 12 RNFSIVAHIDHGKSTLADRFIQHCRGLTEREMSSQVLDNMD-IERERGITIKAQTVRLNYTSTDAKDYQLNLIDTPGHVD 90 (606)
Q Consensus 12 RN~~IiaHvDhGKTTL~d~lL~~tg~i~~~~~~~~vlD~~~-~EreRGITIka~~~~~~~~~~~~~~y~iNlIDTPGH~D 90 (606)
.||.+||+-++||||+.-+|-...|. .+.|.+. +|++-|.+|. .+++.-|-.-
T Consensus 2 k~I~LiG~mGsGKstiGk~La~~l~~--------~fiD~D~~Ie~~~g~sI~------------------eif~~~Ge~~ 55 (169)
T PRK13949 2 ARIFLVGYMGAGKTTLGKALARELGL--------SFIDLDFFIENRFHKTVG------------------DIFAERGEAV 55 (169)
T ss_pred CCEEEECCCCCCHHHHHHHHHHHHCC--------CEEECCHHHHHHHCCCHH------------------HHHHHHCHHH
T ss_conf 83899799999889999999999599--------979784999998599999------------------9999869899
Q ss_pred HHHHHHHHHHH---CCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEC
Q ss_conf 27999999973---0268999986878865589999999970996799832
Q gi|254780321|r 91 FTYEVSRSLSA---CEGSLLVVDATQGVEAQTLANVYQAIDNNHEIITVLN 138 (606)
Q Consensus 91 F~~EV~r~l~a---~dgaiLvVdA~~Gvq~QT~~~~~~A~~~~l~~I~viN 138 (606)
|---=...|.. .++ .||+---|+ +....++.+..+.| .++.++
T Consensus 56 FR~~E~~~l~~l~~~~~--~VistGGG~-v~~~~n~~~l~~~g--~vV~L~ 101 (169)
T PRK13949 56 FRELERNMLHEVAEFED--VVISTGGGA-PCFFDNMELMNASG--TTVYLK 101 (169)
T ss_pred HHHHHHHHHHHHHCCCC--EEEECCCCC-CCCHHHHHHHHHCC--EEEEEE
T ss_conf 99999999999845898--399748631-15799999999689--579998
No 459
>COG4963 CpaE Flp pilus assembly protein, ATPase CpaE [Intracellular trafficking and secretion]
Probab=88.77 E-value=1.8 Score=22.59 Aligned_cols=18 Identities=17% Similarity=0.191 Sum_probs=8.6
Q ss_pred CHHHHHHHHHHHHHHCCC
Q ss_conf 767898889888664495
Q gi|254780321|r 353 GLLHLEIIQERLEREFSL 370 (606)
Q Consensus 353 G~LHLeVi~eRL~rEfg~ 370 (606)
+.-+.+=+.+.+++.|++
T Consensus 203 ~~~~~~~Ll~~~~~~~~~ 220 (366)
T COG4963 203 KTGAVERLLDLLRGSFDF 220 (366)
T ss_pred CCCHHHHHHHHHHCCCCE
T ss_conf 312699999976402883
No 460
>PRK09866 hypothetical protein; Provisional
Probab=88.62 E-value=0.37 Score=27.23 Aligned_cols=95 Identities=28% Similarity=0.356 Sum_probs=53.3
Q ss_pred EEEEEECCCCCHH-----HHHHHHHHHHCCEEEEEEECCCCC---CHHHHHHHHHHHHCCCCEEEEECCCCC---CCCCC
Q ss_conf 9999617873002-----799999997302689999868788---655899999999709967998326788---75321
Q gi|254780321|r 79 QLNLIDTPGHVDF-----TYEVSRSLSACEGSLLVVDATQGV---EAQTLANVYQAIDNNHEIITVLNKADL---PSADP 147 (606)
Q Consensus 79 ~iNlIDTPGH~DF-----~~EV~r~l~a~dgaiLvVdA~~Gv---q~QT~~~~~~A~~~~l~~I~viNKiD~---~~A~~ 147 (606)
.+.|+||||--.= .--+.--|+-+-.+|.|.|=++== -.+-+. -..|.....+..+.+||.|- .+-+-
T Consensus 231 ~L~llDTPGPNEAGq~~l~~m~~eQL~raSaVLaVmDyTQl~s~ad~evr~-~l~ai~~~~~l~~lvnkfdq~drn~d~~ 309 (742)
T PRK09866 231 QLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISDEEVRE-AILAVGQSVPLYVLVNKFDQQDRNSDDA 309 (742)
T ss_pred CEEEECCCCCCCCCCHHHHHHHHHHHHHHCCHHEEECHHHHCCCCHHHHHH-HHHHHHHHHHHHHHHHHHHHCCCCCCCH
T ss_conf 158735999973355779999999998614211021167544200699999-9999861005999986540003478719
Q ss_pred CCHHHHHHHHH---HHHHHHHHHHHHHCCC
Q ss_conf 13388877555---3223210001110022
Q gi|254780321|r 148 DRVKKQIEETI---GISTEDALLVSAKTGE 174 (606)
Q Consensus 148 e~v~~ei~~~~---g~~~~~ii~vSAktG~ 174 (606)
|.|+.-|-..+ .+.++.+.|+|.+-|.
T Consensus 310 ~~vr~~v~~~l~~g~i~~~~v~p~ss~~~y 339 (742)
T PRK09866 310 DQVRALISGTLMKGCITPQQIFPVSSMWGY 339 (742)
T ss_pred HHHHHHHHHHHHCCCCCHHHCCCCHHHHHH
T ss_conf 999987335552389875323543378999
No 461
>TIGR02857 CydD ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease/ATP-binding protein CydD; InterPro: IPR014216 The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain and a C-terminal ATP-binding domain. In Escherichia coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in the export of redox-active thiol compounds such as cysteine and glutathione , . The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this entry are all either found in the gammaproteobacterial context, or the CydABCD context. All members of this entry scoring above the trusted cut off at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature, based on this operon in Bacillus subtilis, assigns cydC to the third gene in the operon, where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologues in this family in accordance with the precedence of publication of the E. coli name, CydD..
Probab=88.61 E-value=0.38 Score=27.21 Aligned_cols=19 Identities=32% Similarity=0.464 Sum_probs=8.3
Q ss_pred EEEECCCCCCHHHHHHHHH
Q ss_conf 9998013898778899999
Q gi|254780321|r 14 FSIVAHIDHGKSTLADRFI 32 (606)
Q Consensus 14 ~~IiaHvDhGKTTL~d~lL 32 (606)
++|+|+.++|||||...||
T Consensus 381 vAl~G~SGaGKSTLL~lLL 399 (570)
T TIGR02857 381 VALVGPSGAGKSTLLNLLL 399 (570)
T ss_pred EEEEECCCCCHHHHHHHHH
T ss_conf 8886279997889999997
No 462
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=88.54 E-value=1.9 Score=22.49 Aligned_cols=25 Identities=32% Similarity=0.317 Sum_probs=19.4
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHCCCCC
Q ss_conf 1799980138987788999999829805
Q gi|254780321|r 12 RNFSIVAHIDHGKSTLADRFIQHCRGLT 39 (606)
Q Consensus 12 RN~~IiaHvDhGKTTL~d~lL~~tg~i~ 39 (606)
-.++|+|..++|||||...| +|...
T Consensus 29 e~i~ivG~sGsGKSTLl~ll---~gl~~ 53 (171)
T cd03228 29 EKVAIVGPSGSGKSTLLKLL---LRLYD 53 (171)
T ss_pred CEEEEECCCCCHHHHHHHHH---HCCCC
T ss_conf 89999999998399999999---76775
No 463
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=88.42 E-value=1.4 Score=23.36 Aligned_cols=69 Identities=22% Similarity=0.303 Sum_probs=37.0
Q ss_pred EEEEECCCCCCHHHHHHHHHHHC-CCCCCCCCCCEEECCCHHHHHHCCEEEEEEEEEEEECCCCCEEEEEEEECCCCCHH
Q ss_conf 79998013898778899999982-98054444311305867798719505232799997437884389999617873002
Q gi|254780321|r 13 NFSIVAHIDHGKSTLADRFIQHC-RGLTEREMSSQVLDNMDIERERGITIKAQTVRLNYTSTDAKDYQLNLIDTPGHVDF 91 (606)
Q Consensus 13 N~~IiaHvDhGKTTL~d~lL~~t-g~i~~~~~~~~vlD~~~~EreRGITIka~~~~~~~~~~~~~~y~iNlIDTPGH~DF 91 (606)
=|+|.|.-++|||||.|++.+.. |... |.....-+++. .-.|=. ..-|.+.| ...|+.|++ +-.|| .||
T Consensus 30 lflI~G~nGsGKSTIlDAI~~aLYGk~~-r~~~~~~~~~~---~~~ge~--~aeV~feF-~~g~~~YrV--~R~~g-ld~ 99 (213)
T cd03279 30 LFLICGPTGAGKSTILDAITYALYGKTP-RYGRQENLRSV---FAPGED--TAEVSFTF-QLGGKKYRV--ERSRG-LDY 99 (213)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCCC-CCCCCCCCCCC---CCCCCC--EEEEEEEE-EECCEEEEE--EECCC-CCH
T ss_conf 8999889999788999999999838882-33664100024---456784--49999999-977868899--86279-988
No 464
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=88.39 E-value=1.3 Score=23.68 Aligned_cols=94 Identities=19% Similarity=0.262 Sum_probs=51.0
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCH-HHHHHCCEEEEEEEEEEEECCCCCEEEEEEEECCCCCHH
Q ss_conf 7999801389877889999998298054444311305867-798719505232799997437884389999617873002
Q gi|254780321|r 13 NFSIVAHIDHGKSTLADRFIQHCRGLTEREMSSQVLDNMD-IERERGITIKAQTVRLNYTSTDAKDYQLNLIDTPGHVDF 91 (606)
Q Consensus 13 N~~IiaHvDhGKTTL~d~lL~~tg~i~~~~~~~~vlD~~~-~EreRGITIka~~~~~~~~~~~~~~y~iNlIDTPGH~DF 91 (606)
||.+||+-++||||+.-+|-...+ -.+.|.+. +|+.-|.||.. |+..-|-.-|
T Consensus 1 nI~LiG~~G~GKstigk~la~~l~--------~~fiD~D~~Ie~~~g~si~e------------------if~~~Ge~~F 54 (154)
T cd00464 1 NIVLIGMMGAGKTTVGRLLAKALG--------LPFVDLDELIEQRAGMSIPE------------------IFAEEGEEGF 54 (154)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHC--------CCEEECCHHHHHHHCCCHHH------------------HHHHCCHHHH
T ss_conf 989988999988999999999979--------89796859999994999999------------------9987493878
Q ss_pred HHHHHHHHH-H--CCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 799999997-3--026899998687886558999999997099679983
Q gi|254780321|r 92 TYEVSRSLS-A--CEGSLLVVDATQGVEAQTLANVYQAIDNNHEIITVL 137 (606)
Q Consensus 92 ~~EV~r~l~-a--~dgaiLvVdA~~Gvq~QT~~~~~~A~~~~l~~I~vi 137 (606)
--.-.+.+. . .++. ||+.--| .+....+.....+.+. ++.+
T Consensus 55 R~~E~~~l~~~~~~~~~--VIs~GGG-~v~~~~~~~~l~~~~~--vI~L 98 (154)
T cd00464 55 RELEREVLLLLLTKENA--VIATGGG-AVLREENRRLLLENGI--VVWL 98 (154)
T ss_pred HHHHHHHHHHHHCCCCE--EEECCCC-CCCCHHHHHHHHHCCE--EEEE
T ss_conf 99999999998568985--9973897-3368999999995790--8999
No 465
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=88.28 E-value=0.46 Score=26.62 Aligned_cols=25 Identities=32% Similarity=0.280 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCC
Q ss_conf 7999801389877889999998298054
Q gi|254780321|r 13 NFSIVAHIDHGKSTLADRFIQHCRGLTE 40 (606)
Q Consensus 13 N~~IiaHvDhGKTTL~d~lL~~tg~i~~ 40 (606)
-++|+||-++|||||+-.| +|.+..
T Consensus 30 ~vaiiG~nGsGKSTL~~~l---~Gll~P 54 (274)
T PRK13644 30 YIGIIGKNGSGKSTLALHL---NGLLRP 54 (274)
T ss_pred EEEEECCCCCHHHHHHHHH---HCCCCC
T ss_conf 9999999998099999999---706858
No 466
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=88.19 E-value=0.78 Score=25.10 Aligned_cols=97 Identities=21% Similarity=0.216 Sum_probs=52.5
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCH-HHHHHCCEEEEEEEEEEEECCCCCEEEEEEEECCCCCH
Q ss_conf 17999801389877889999998298054444311305867-79871950523279999743788438999961787300
Q gi|254780321|r 12 RNFSIVAHIDHGKSTLADRFIQHCRGLTEREMSSQVLDNMD-IERERGITIKAQTVRLNYTSTDAKDYQLNLIDTPGHVD 90 (606)
Q Consensus 12 RN~~IiaHvDhGKTTL~d~lL~~tg~i~~~~~~~~vlD~~~-~EreRGITIka~~~~~~~~~~~~~~y~iNlIDTPGH~D 90 (606)
+||.+||.-++||||+.-+|-...|. .+.|.++ +|++-|.||. = +...=|..-
T Consensus 3 ~~I~LiG~mGsGKstiGk~LA~~L~~--------~fiD~D~~Ie~~~g~sI~-----e-------------if~~~Ge~~ 56 (172)
T PRK03731 3 QPLFLVGPRGCGKTTVGMALAQALGY--------RFVDTDLWLQSTLQMTVA-----E-------------IVEREGWAG 56 (172)
T ss_pred CCEEEECCCCCCHHHHHHHHHHHHCC--------CEEECCHHHHHHHCCCHH-----H-------------HHHHHCHHH
T ss_conf 98899889999889999999998599--------979786999988398999-----9-------------999839899
Q ss_pred HHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 27999999973026899998687886558999999997099679983
Q gi|254780321|r 91 FTYEVSRSLSACEGSLLVVDATQGVEAQTLANVYQAIDNNHEIITVL 137 (606)
Q Consensus 91 F~~EV~r~l~a~dgaiLvVdA~~Gvq~QT~~~~~~A~~~~l~~I~vi 137 (606)
|---=..+|..+..-=.||+.--|+-- ...++.+-.++| .++.+
T Consensus 57 FR~~E~~~l~~l~~~~~VIstGGG~v~-~~~n~~~L~~~g--~vv~L 100 (172)
T PRK03731 57 FRARESAALEAVTAPSTVVATGGGIIL-TEENRAFMRNNG--IVIYL 100 (172)
T ss_pred HHHHHHHHHHHHCCCCEEEEECCCCCC-CHHHHHHHHHCC--EEEEE
T ss_conf 999999999984278828980786426-899999999689--99999
No 467
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=88.06 E-value=0.37 Score=27.23 Aligned_cols=25 Identities=32% Similarity=0.457 Sum_probs=19.1
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHCC
Q ss_conf 0011100223200678776321000
Q gi|254780321|r 166 LLVSAKTGEGIPLLLERIVQQLPSP 190 (606)
Q Consensus 166 i~vSAktG~GV~~LLd~Iv~~iP~P 190 (606)
+.+|+.||.|=..||+++..++|+-
T Consensus 176 ILisGGTGSGKTTlLNal~~~i~~~ 200 (355)
T COG4962 176 ILISGGTGSGKTTLLNALSGFIDSD 200 (355)
T ss_pred EEEECCCCCCHHHHHHHHHHCCCCC
T ss_conf 9996787887999999997157976
No 468
>cd02030 NDUO42 NADH:Ubiquinone oxioreductase, 42 kDa (NDUO42) is a family of proteins that are highly similar to deoxyribonucleoside kinases (dNK). Members of this family have been identified as one of the subunits of NADH:Ubiquinone oxioreductase (complex I), a multi-protein complex located in the inner mitochondrial membrane. The main function of the complex is to transport electrons from NADH to ubiquinone, which is accompanied by the translocation of protons from the mitochondrial matrix to the inter membrane space.
Probab=88.02 E-value=0.53 Score=26.23 Aligned_cols=24 Identities=21% Similarity=0.321 Sum_probs=20.1
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCC
Q ss_conf 999801389877889999998298
Q gi|254780321|r 14 FSIVAHIDHGKSTLADRFIQHCRG 37 (606)
Q Consensus 14 ~~IiaHvDhGKTTL~d~lL~~tg~ 37 (606)
|||=|-|++|||||+..|-...|.
T Consensus 2 I~IEGnIG~GKTTl~~~La~~l~~ 25 (219)
T cd02030 2 ITVDGNIASGKGKLAKELAEKLGM 25 (219)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCC
T ss_conf 899678567999999999998598
No 469
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=87.94 E-value=0.7 Score=25.40 Aligned_cols=25 Identities=12% Similarity=0.015 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCC
Q ss_conf 7999801389877889999998298054
Q gi|254780321|r 13 NFSIVAHIDHGKSTLADRFIQHCRGLTE 40 (606)
Q Consensus 13 N~~IiaHvDhGKTTL~d~lL~~tg~i~~ 40 (606)
-+|++|+-++|||||...+ +|.+..
T Consensus 28 i~~llGpNGAGKSTll~~i---~Gl~~p 52 (232)
T cd03218 28 IVGLLGPNGAGKTTTFYMI---VGLVKP 52 (232)
T ss_pred EEEEECCCCCCHHHHHHHH---HCCCCC
T ss_conf 9999999996199999999---779999
No 470
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=87.88 E-value=0.42 Score=26.86 Aligned_cols=122 Identities=19% Similarity=0.101 Sum_probs=56.6
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCCCC----C-EEECCCHHHHHHCCEEEEEEEEEEEECCCCCEEEEEEEECCC
Q ss_conf 79998013898778899999982980544443----1-130586779871950523279999743788438999961787
Q gi|254780321|r 13 NFSIVAHIDHGKSTLADRFIQHCRGLTEREMS----S-QVLDNMDIERERGITIKAQTVRLNYTSTDAKDYQLNLIDTPG 87 (606)
Q Consensus 13 N~~IiaHvDhGKTTL~d~lL~~tg~i~~~~~~----~-~vlD~~~~EreRGITIka~~~~~~~~~~~~~~y~iNlIDTPG 87 (606)
-+||+|+.++|||||..-|+ |-....+.. . .+.+....+..+-|+.-.|...+.... -+-|+. -|
T Consensus 30 ~vaivG~sGsGKSTll~ll~---gl~~p~~G~I~i~g~di~~~~~~~~r~~i~~v~Q~~~lf~~T-----i~eNi~--~g 99 (237)
T cd03252 30 VVGIVGRSGSGKSTLTKLIQ---RFYVPENGRVLVDGHDLALADPAWLRRQVGVVLQENVLFNRS-----IRDNIA--LA 99 (237)
T ss_pred EEEEECCCCCHHHHHHHHHH---CCCCCCCCEEEECCEECCCCCHHHHHHHCEEEECCCCCCCCC-----HHHHHH--CC
T ss_conf 99999999985999999996---776579878999999955189999986018995877155782-----898872--38
Q ss_pred CCHHH-HHHHHHHHHCCE----------EEEEEEC----CCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCC
Q ss_conf 30027-999999973026----------8999986----87886558999999997099679983267887532113
Q gi|254780321|r 88 HVDFT-YEVSRSLSACEG----------SLLVVDA----TQGVEAQTLANVYQAIDNNHEIITVLNKADLPSADPDR 149 (606)
Q Consensus 88 H~DF~-~EV~r~l~a~dg----------aiLvVdA----~~Gvq~QT~~~~~~A~~~~l~~I~viNKiD~~~A~~e~ 149 (606)
..++. .++..+++.+.- -=-+|.. -+|-|.|-++.. .|+-.+-++++ +|-|.+..|.
T Consensus 100 ~~~~~~~~i~~a~~~~~l~~~i~~l~~g~~t~i~~~g~~LSgGqkQRlalA-Rall~~~~ill----lDEpts~LD~ 171 (237)
T cd03252 100 DPGMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIA-RALIHNPRILI----FDEATSALDY 171 (237)
T ss_pred CCCCCHHHHHHHHHHHCCHHHHHHCCCCCCEEECCCCCCCCHHHHHHHHHH-HHHHCCCCEEE----EECCCCCCCH
T ss_conf 999999999999999685444663666662055797884899999999999-99966999999----9486456898
No 471
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=87.82 E-value=0.44 Score=26.77 Aligned_cols=25 Identities=20% Similarity=0.306 Sum_probs=18.7
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCC
Q ss_conf 7999801389877889999998298054
Q gi|254780321|r 13 NFSIVAHIDHGKSTLADRFIQHCRGLTE 40 (606)
Q Consensus 13 N~~IiaHvDhGKTTL~d~lL~~tg~i~~ 40 (606)
-++||||-++|||||+-.| +|.+..
T Consensus 35 ~v~IiG~nGsGKSTL~k~l---~Gll~P 59 (304)
T PRK13651 35 FIAIIGQTGSGKTTFIEHL---NALLLP 59 (304)
T ss_pred EEEEECCCCCCHHHHHHHH---HCCCCC
T ss_conf 9999879998599999999---669998
No 472
>PRK05480 uridine kinase; Provisional
Probab=87.70 E-value=0.59 Score=25.88 Aligned_cols=24 Identities=21% Similarity=0.253 Sum_probs=20.8
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCC
Q ss_conf 799980138987788999999829
Q gi|254780321|r 13 NFSIVAHIDHGKSTLADRFIQHCR 36 (606)
Q Consensus 13 N~~IiaHvDhGKTTL~d~lL~~tg 36 (606)
=|+|.|..++||||++.+|...-+
T Consensus 8 iIgIaG~SgSGKTT~a~~L~~~l~ 31 (209)
T PRK05480 8 IIGIAGGSGSGKTTVASTIYEELG 31 (209)
T ss_pred EEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 999989997789999999999808
No 473
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=87.64 E-value=0.56 Score=26.06 Aligned_cols=20 Identities=20% Similarity=0.265 Sum_probs=16.0
Q ss_pred EEEEEECCCCCCHHHHHHHH
Q ss_conf 17999801389877889999
Q gi|254780321|r 12 RNFSIVAHIDHGKSTLADRF 31 (606)
Q Consensus 12 RN~~IiaHvDhGKTTL~d~l 31 (606)
--++|+|+.++|||||.-.+
T Consensus 29 e~~~iiGpSGsGKSTll~~i 48 (239)
T cd03296 29 ELVALLGPSGSGKTTLLRLI 48 (239)
T ss_pred CEEEEECCCCCHHHHHHHHH
T ss_conf 89999999997799999999
No 474
>pfam00931 NB-ARC NB-ARC domain.
Probab=87.63 E-value=0.49 Score=26.42 Aligned_cols=24 Identities=29% Similarity=0.325 Sum_probs=21.1
Q ss_pred HHCEEEEEECCCCCCHHHHHHHHH
Q ss_conf 253179998013898778899999
Q gi|254780321|r 9 SRIRNFSIVAHIDHGKSTLADRFI 32 (606)
Q Consensus 9 ~~IRN~~IiaHvDhGKTTL~d~lL 32 (606)
+++|=|+|.|..+-||||||-.+.
T Consensus 17 ~~~~vI~I~G~gGiGKTtLA~~v~ 40 (285)
T pfam00931 17 ENLGVVGIVGMGGVGKTTLAKQIY 40 (285)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHH
T ss_conf 895399988999563999999997
No 475
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=87.54 E-value=0.48 Score=26.48 Aligned_cols=53 Identities=19% Similarity=0.062 Sum_probs=28.5
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCCCC-----CEEECCCHHHHHHCCEEEEEEEEE
Q ss_conf 79998013898778899999982980544443-----113058677987195052327999
Q gi|254780321|r 13 NFSIVAHIDHGKSTLADRFIQHCRGLTEREMS-----SQVLDNMDIERERGITIKAQTVRL 68 (606)
Q Consensus 13 N~~IiaHvDhGKTTL~d~lL~~tg~i~~~~~~-----~~vlD~~~~EreRGITIka~~~~~ 68 (606)
-+||+|..++|||||+.-|+ |........ .-+.+....+-.+.|+.-.|...+
T Consensus 31 ~iaIvG~sGsGKSTLl~ll~---gl~~p~~G~I~idg~~i~~~~~~~~r~~i~~v~Q~~~l 88 (238)
T cd03249 31 TVALVGSSGCGKSTVVSLLE---RFYDPTSGEILLDGVDIRDLNLRWLRSQIGLVSQEPVL 88 (238)
T ss_pred EEEEECCCCCCHHHHHHHHH---HCCCCCCCEEEECCEECCCCCHHHHHHCEEEECCCCEE
T ss_conf 99999999998999999982---38618851899999992318999997406999158967
No 476
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=87.49 E-value=2.2 Score=22.07 Aligned_cols=61 Identities=31% Similarity=0.449 Sum_probs=31.2
Q ss_pred EEEEEECCCCC--H--HHHHHH---HHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCE-EEEECCCCCC
Q ss_conf 99996178730--0--279999---9997302689999868788655899999999709967-9983267887
Q gi|254780321|r 79 QLNLIDTPGHV--D--FTYEVS---RSLSACEGSLLVVDATQGVEAQTLANVYQAIDNNHEI-ITVLNKADLP 143 (606)
Q Consensus 79 ~iNlIDTPGH~--D--F~~EV~---r~l~a~dgaiLvVdA~~Gvq~QT~~~~~~A~~~~l~~-I~viNKiD~~ 143 (606)
-+=||||-|-. | --.|.. ..++- |-.||||||.-|=+|- +.-.|+...+++ =++|+|+|-.
T Consensus 184 DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P-~E~llVvDam~GQdA~---~~A~aF~e~l~itGvIlTKlDGd 252 (451)
T COG0541 184 DVVIVDTAGRLHIDEELMDELKEIKEVINP-DETLLVVDAMIGQDAV---NTAKAFNEALGITGVILTKLDGD 252 (451)
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHHCCC-CEEEEEEECCCCHHHH---HHHHHHHHHCCCCEEEEECCCCC
T ss_conf 889996887330309999999999855398-7489987644456789---99999866269864999714678
No 477
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=87.47 E-value=1.1 Score=24.00 Aligned_cols=24 Identities=33% Similarity=0.257 Sum_probs=18.4
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCC
Q ss_conf 799980138987788999999829805
Q gi|254780321|r 13 NFSIVAHIDHGKSTLADRFIQHCRGLT 39 (606)
Q Consensus 13 N~~IiaHvDhGKTTL~d~lL~~tg~i~ 39 (606)
-+||+|+-++|||||+-.| .|.+.
T Consensus 32 ~vaivG~nGsGKSTL~~~l---~Gll~ 55 (276)
T PRK13650 32 WLSIIGHNGSGKSTTVRLI---DGLLE 55 (276)
T ss_pred EEEEECCCCCHHHHHHHHH---HCCCC
T ss_conf 9999999998799999999---73889
No 478
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=87.36 E-value=0.64 Score=25.65 Aligned_cols=25 Identities=28% Similarity=0.352 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCC
Q ss_conf 7999801389877889999998298054
Q gi|254780321|r 13 NFSIVAHIDHGKSTLADRFIQHCRGLTE 40 (606)
Q Consensus 13 N~~IiaHvDhGKTTL~d~lL~~tg~i~~ 40 (606)
-+|||||-++|||||.-.| +|.+..
T Consensus 34 ~vaiiG~nGsGKSTLl~~l---~Gll~p 58 (288)
T PRK13643 34 YTALIGHTGSGKSTLLQHL---NGLLQP 58 (288)
T ss_pred EEEEECCCCCHHHHHHHHH---HCCCCC
T ss_conf 9999999994799999999---748888
No 479
>KOG0467 consensus
Probab=87.25 E-value=0.0057 Score=39.40 Aligned_cols=36 Identities=3% Similarity=-0.319 Sum_probs=13.9
Q ss_pred EECCCCCHHHHHHHHHHHHCCEEEEEEECCCCCCHHH
Q ss_conf 6178730027999999973026899998687886558
Q gi|254780321|r 83 IDTPGHVDFTYEVSRSLSACEGSLLVVDATQGVEAQT 119 (606)
Q Consensus 83 IDTPGH~DF~~EV~r~l~a~dgaiLvVdA~~Gvq~QT 119 (606)
++-|+|.+|..+++-.-++|+++ -+.+-.+++.+|+
T Consensus 252 kplf~~~vle~lw~iy~~~~~~~-d~~~~~ki~k~l~ 287 (887)
T KOG0467 252 KPLFVQFVLENLWRIYELALKSR-DKEKLEKIAKSLN 287 (887)
T ss_pred CCCCCEEEHHHHHHHHHHHHCCC-HHHHHHHHHHHCC
T ss_conf 77631333005789999874320-2888998764302
No 480
>COG2721 UxaA Altronate dehydratase [Carbohydrate transport and metabolism]
Probab=87.25 E-value=0.77 Score=25.14 Aligned_cols=24 Identities=13% Similarity=-0.094 Sum_probs=11.4
Q ss_pred CEEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 317999801389877889999998
Q gi|254780321|r 11 IRNFSIVAHIDHGKSTLADRFIQH 34 (606)
Q Consensus 11 IRN~~IiaHvDhGKTTL~d~lL~~ 34 (606)
+||+-.|=-.++=-.+.++.+...
T Consensus 19 tRN~i~Ii~sv~C~n~v~~~ia~~ 42 (381)
T COG2721 19 TRNELGIIPSVGCVNGVARYIAKR 42 (381)
T ss_pred ECEEEEEECCCCHHHHHHHHHHHH
T ss_conf 010699962612107999999998
No 481
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=87.19 E-value=2.3 Score=21.95 Aligned_cols=101 Identities=20% Similarity=0.308 Sum_probs=58.1
Q ss_pred EEEE-CCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHCCEEEEEEEEEEEECCCCCEEEEEEEECCCCCHHH
Q ss_conf 9998-013898778899999982980544443113058677987195052327999974378843899996178730027
Q gi|254780321|r 14 FSIV-AHIDHGKSTLADRFIQHCRGLTEREMSSQVLDNMDIERERGITIKAQTVRLNYTSTDAKDYQLNLIDTPGHVDFT 92 (606)
Q Consensus 14 ~~Ii-aHvDhGKTTL~d~lL~~tg~i~~~~~~~~vlD~~~~EreRGITIka~~~~~~~~~~~~~~y~iNlIDTPGH~DF~ 92 (606)
|+|. |-.+-||||++=.|- -.+.+.+..--++|.+- |. .++ +|-+-|||||.-. +
T Consensus 2 i~v~sgKgGvGkt~~~~nLa---~~la~~G~~vll~D~D~-----g~----an~----------~~D~viiD~~aG~--~ 57 (139)
T cd02038 2 IAVTSGKGGVGKTNISANLA---LALAKLGKRVLLLDADL-----GL----ANL----------DYDYIIIDTGAGI--S 57 (139)
T ss_pred EEEECCCCCCCHHHHHHHHH---HHHHHCCCCEEEEECCC-----CC----CCC----------CCCEEEEECCCCC--C
T ss_conf 89964999983999999999---99997899699998989-----99----657----------9999999489998--7
Q ss_pred HHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHH-----HHHCCC-CEEEEECCCCC
Q ss_conf 999999973026899998687886558999999-----997099-67998326788
Q gi|254780321|r 93 YEVSRSLSACEGSLLVVDATQGVEAQTLANVYQ-----AIDNNH-EIITVLNKADL 142 (606)
Q Consensus 93 ~EV~r~l~a~dgaiLvVdA~~Gvq~QT~~~~~~-----A~~~~l-~~I~viNKiD~ 142 (606)
..+...+.++|-+++|+.. +|-.+...|. ..+.+. .+-+++|+..-
T Consensus 58 ~~~~~~~~~ad~~lvV~tp----eptSi~DAYalIK~l~~~~~~~~~~lvvN~v~s 109 (139)
T cd02038 58 DNVLDFFLAADEVIVVTTP----EPTSITDAYALIKKLAKQLRVLNFRVVVNRAES 109 (139)
T ss_pred HHHHHHHHHCCCEEEEECC----CHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCC
T ss_conf 7899999958957999589----706799999999999996399975999956899
No 482
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=87.17 E-value=1 Score=24.23 Aligned_cols=25 Identities=20% Similarity=0.158 Sum_probs=19.0
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCC
Q ss_conf 7999801389877889999998298054
Q gi|254780321|r 13 NFSIVAHIDHGKSTLADRFIQHCRGLTE 40 (606)
Q Consensus 13 N~~IiaHvDhGKTTL~d~lL~~tg~i~~ 40 (606)
-++|+|.-++|||||.--+ +|....
T Consensus 29 i~~l~G~NGaGKSTLlkli---~Gl~~p 53 (200)
T PRK13540 29 LLHLKGSNGAGKTTLLKLI---AGLLNP 53 (200)
T ss_pred EEEEECCCCCCHHHHHHHH---HCCCCC
T ss_conf 9999889998799999999---778588
No 483
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=87.07 E-value=0.81 Score=24.96 Aligned_cols=53 Identities=28% Similarity=0.250 Sum_probs=31.0
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCCCC-----CEEECCC-HHHHHHCCEEEEEEEEE
Q ss_conf 79998013898778899999982980544443-----1130586-77987195052327999
Q gi|254780321|r 13 NFSIVAHIDHGKSTLADRFIQHCRGLTEREMS-----SQVLDNM-DIERERGITIKAQTVRL 68 (606)
Q Consensus 13 N~~IiaHvDhGKTTL~d~lL~~tg~i~~~~~~-----~~vlD~~-~~EreRGITIka~~~~~ 68 (606)
=++|+|+-++|||||+..| +|.+...... ..+.... ...+++||.+-.|..++
T Consensus 32 i~~liG~nGaGKSTL~~~l---~G~~~~~~G~i~~~G~~~~~~~~~~~~~~~i~~v~Q~~~l 90 (501)
T PRK10762 32 VMALVGENGAGKSTLMKVL---TGIYTRDAGTILYLGKEVTFNGPKSSQEAGIGIIHQELNL 90 (501)
T ss_pred EEEEECCCCCHHHHHHHHH---HCCCCCCCEEEEECCEECCCCCHHHHHHCCEEEECCCCCC
T ss_conf 9999899998299999999---5799898449999999998899999986895897664656
No 484
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=87.00 E-value=0.57 Score=25.98 Aligned_cols=26 Identities=23% Similarity=0.344 Sum_probs=22.4
Q ss_pred HHCEEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 25317999801389877889999998
Q gi|254780321|r 9 SRIRNFSIVAHIDHGKSTLADRFIQH 34 (606)
Q Consensus 9 ~~IRN~~IiaHvDhGKTTL~d~lL~~ 34 (606)
+.=+||.|.|..++|||||.-+|+..
T Consensus 23 ~~~~nIlIsG~tGSGKTTll~al~~~ 48 (186)
T cd01130 23 EARKNILISGGTGSGKTTLLNALLAF 48 (186)
T ss_pred HCCCCEEEECCCCCCHHHHHHHHHHH
T ss_conf 85998999899999899999999961
No 485
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=86.99 E-value=2.3 Score=21.88 Aligned_cols=135 Identities=16% Similarity=0.164 Sum_probs=68.2
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHH-CCEE--EEEEEEEEEECC--------CCCEEEEEE
Q ss_conf 99980138987788999999829805444431130586779871-9505--232799997437--------884389999
Q gi|254780321|r 14 FSIVAHIDHGKSTLADRFIQHCRGLTEREMSSQVLDNMDIERER-GITI--KAQTVRLNYTST--------DAKDYQLNL 82 (606)
Q Consensus 14 ~~IiaHvDhGKTTL~d~lL~~tg~i~~~~~~~~vlD~~~~EreR-GITI--ka~~~~~~~~~~--------~~~~y~iNl 82 (606)
++|||--++|||||.-.+| |.+......-.+ ...+..+.| +-.| --|..++.|..+ -|.-++.++
T Consensus 33 ~~iiGPNGaGKSTLlK~iL---Gll~p~~G~i~~-~g~~~~~~~~~~~IgYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~ 108 (254)
T COG1121 33 TALIGPNGAGKSTLLKAIL---GLLKPSSGEIKI-FGKPVRKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGW 108 (254)
T ss_pred EEEECCCCCCHHHHHHHHH---CCCCCCCCEEEE-CCCCCCCCCCCCEEEECCCCCCCCCCCCCCHHHHHHCCCCCCCCC
T ss_conf 9999998888899999996---787677426998-366633346677699757610267679967999986067544660
Q ss_pred EECCCCCHHHHHHHHHHHHCCE---EEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCH-HHHHHHHH
Q ss_conf 6178730027999999973026---8999986878865589999999970996799832678875321133-88877555
Q gi|254780321|r 83 IDTPGHVDFTYEVSRSLSACEG---SLLVVDATQGVEAQTLANVYQAIDNNHEIITVLNKADLPSADPDRV-KKQIEETI 158 (606)
Q Consensus 83 IDTPGH~DF~~EV~r~l~a~dg---aiLvVdA~~Gvq~QT~~~~~~A~~~~l~~I~viNKiD~~~A~~e~v-~~ei~~~~ 158 (606)
...|+-.| ..+|.++|..+.. +==-+..-+|-|-|-+. +-.|+.++-.+++ +|-|-+.+|-. ..++.+++
T Consensus 109 ~~~~~~~d-~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~-lARAL~~~p~lll----LDEP~~gvD~~~~~~i~~lL 182 (254)
T COG1121 109 FRRLNKKD-KEKVDEALERVGMEDLRDRQIGELSGGQKQRVL-LARALAQNPDLLL----LDEPFTGVDVAGQKEIYDLL 182 (254)
T ss_pred CCCCCHHH-HHHHHHHHHHCCCHHHHCCCCCCCCCHHHHHHH-HHHHHCCCCCEEE----ECCCCCCCCHHHHHHHHHHH
T ss_conf 13666777-999999999839266647955546727999999-9998536999899----66875457987899999999
No 486
>TIGR00618 sbcc exonuclease SbcC; InterPro: IPR004592 All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. SbcC may have nuclease activity that is functionally related to one of the nuclease activities of the RecBCD enzyme (IPR004586 from INTERPRO).; GO: 0004527 exonuclease activity, 0006259 DNA metabolic process.
Probab=86.87 E-value=0.59 Score=25.91 Aligned_cols=34 Identities=18% Similarity=0.295 Sum_probs=26.0
Q ss_pred CHHHCEEEEEECCCCCCHHHHHHHHHHHC-CC-CCC
Q ss_conf 85253179998013898778899999982-98-054
Q gi|254780321|r 7 PLSRIRNFSIVAHIDHGKSTLADRFIQHC-RG-LTE 40 (606)
Q Consensus 7 p~~~IRN~~IiaHvDhGKTTL~d~lL~~t-g~-i~~ 40 (606)
|.-...-|+|-|--|+|||||.|++-|.- |- +..
T Consensus 26 ~fasl~~f~i~G~tGAGKtsLldAI~yALYGkP~~~ 61 (1063)
T TIGR00618 26 GFASLKLFVICGKTGAGKTSLLDAITYALYGKPVPR 61 (1063)
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCC
T ss_conf 721257367778899835459999999872888775
No 487
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=86.86 E-value=0.52 Score=26.28 Aligned_cols=25 Identities=32% Similarity=0.400 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCC
Q ss_conf 7999801389877889999998298054
Q gi|254780321|r 13 NFSIVAHIDHGKSTLADRFIQHCRGLTE 40 (606)
Q Consensus 13 N~~IiaHvDhGKTTL~d~lL~~tg~i~~ 40 (606)
-+|||||-++|||||.-.| +|.+..
T Consensus 35 ~~aiiG~nGsGKSTLl~~l---~GLl~p 59 (286)
T PRK13646 35 YYAIVGQTGSGKSTLIQNI---NALLKP 59 (286)
T ss_pred EEEEECCCCCHHHHHHHHH---HCCCCC
T ss_conf 9999999998199999999---707888
No 488
>pfam06564 YhjQ YhjQ protein. This family consists of several bacterial YhjQ proteins. The function of this family is unknown. However, the family does contain a P-loop sequence motif suggesting a nucleotide binding function.
Probab=86.86 E-value=2.1 Score=22.17 Aligned_cols=58 Identities=19% Similarity=0.196 Sum_probs=35.6
Q ss_pred EEEEEEEECCCCCHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCC-CEEEEECCCCC
Q ss_conf 3899996178730027999999973026899998687886558999999997099-67998326788
Q gi|254780321|r 77 DYQLNLIDTPGHVDFTYEVSRSLSACEGSLLVVDATQGVEAQTLANVYQAIDNNH-EIITVLNKADL 142 (606)
Q Consensus 77 ~y~iNlIDTPGH~DF~~EV~r~l~a~dgaiLvVdA~~Gvq~QT~~~~~~A~~~~l-~~I~viNKiD~ 142 (606)
+|.+=|||||-... ..+.++|.++|.+|++|-+. +.. +..+...... ...+++|..|.
T Consensus 117 ~yD~iliD~Pp~l~--~l~~~al~aad~vLv~v~~d----~~s--~~~l~~~~~~~~~~ilvn~~d~ 175 (244)
T pfam06564 117 QYRWILLDLPQGFS--PLTRQLLELADVTLAVVHAD----ANC--HIRLHQQALPAGCHLLINDFRI 175 (244)
T ss_pred CCCEEEEECCCCCH--HHHHHHHHHCCCEEEEECCC----HHH--HHHHHHCCCCCCCEEEEECCCH
T ss_conf 89999997999968--99999999769608996888----589--9997323344677488642455
No 489
>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase; InterPro: IPR006417 The NadR protein of Escherichia coli and closely related bacteria is both enzyme and regulatory protein. The first 60 or so amino acids, N-terminal region is a DNA-binding helix-turn-helix domain (IPR001387 from INTERPRO) responsible for repressing the nadAB genes of NAD de novo biosynthesis. The NadR homologs in Mycobacterium tuberculosis, Haemophilus influenzae, and others appear to lack the repressor domain. NadR has recently been shown to act as an enzyme of the salvage pathway of NAD biosynthesis, nicotinamide-nucleotide adenylyltransferase; members of this family are presumed to share this activity. E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this family share that activity. ; GO: 0003677 DNA binding, 0030528 transcription regulator activity, 0006810 transport, 0019363 pyridine nucleotide biosynthetic process, 0045449 regulation of transcription.
Probab=86.85 E-value=0.48 Score=26.48 Aligned_cols=66 Identities=23% Similarity=0.283 Sum_probs=38.6
Q ss_pred EEEEEECCCCHHHHHHHHHHHHHHHHH---CCCCCCCCCCC-CCCCCEEEEE----ECCHHHHHHHHHHHHHHCCCEEE
Q ss_conf 266421267702457889999888641---12211125676-0004202899----63767898889888664495069
Q gi|254780321|r 303 VVFCGLFPVDATQFENLRTAINKLRLN---DASFSFELENS-TALGFGFRCG----FLGLLHLEIIQERLEREFSLNLI 373 (606)
Q Consensus 303 ~v~~~i~p~~~~d~~~L~~aL~kL~~~---D~sl~~e~Ets-~aLg~Gfr~g----glG~LHLeVi~eRL~rEfg~ev~ 373 (606)
.|||-.| .-..||++|.--+.++..+ |-.|..++.|. .+ =|+||= -|++.|-. ++++-+|||++.+
T Consensus 262 ~vfa~~y-~G~eDfeql~P~~~~~i~~~r~DL~ll~~p~tew~~--Dg~R~l~~~~~R~~F~~~--l~~~L~~~~~~f~ 335 (346)
T TIGR01526 262 QVFAKLY-EGREDFEQLHPFLKKTIAEYRFDLTLLLKPNTEWVD--DGLRSLGSEESRKEFQEL--LERALAEFGLSFV 335 (346)
T ss_pred HHHHHHC-CCCCCHHHCCHHHHHHHHHCCCCEEEEECCCCCEEC--CCCCCCCCHHHHHHHHHH--HHHHHHHCCCCEE
T ss_conf 9999870-786554450627887763278847997279987342--885207743227899999--9999997099469
No 490
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=86.79 E-value=0.63 Score=25.72 Aligned_cols=23 Identities=26% Similarity=0.419 Sum_probs=19.6
Q ss_pred EEEECCCCCCHHHHHHHHHHHCC
Q ss_conf 99980138987788999999829
Q gi|254780321|r 14 FSIVAHIDHGKSTLADRFIQHCR 36 (606)
Q Consensus 14 ~~IiaHvDhGKTTL~d~lL~~tg 36 (606)
|+|-|..++|||||+.+|....+
T Consensus 2 IgIaG~SgSGKTT~a~~L~~~l~ 24 (179)
T cd02028 2 VGIAGPSGSGKTTFAKKLSNQLR 24 (179)
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
T ss_conf 89989897789999999999984
No 491
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=86.79 E-value=0.61 Score=25.80 Aligned_cols=26 Identities=15% Similarity=0.388 Sum_probs=20.0
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHCC
Q ss_conf 00011100223200678776321000
Q gi|254780321|r 165 ALLVSAKTGEGIPLLLERIVQQLPSP 190 (606)
Q Consensus 165 ii~vSAktG~GV~~LLd~Iv~~iP~P 190 (606)
-+.+|+-||-|=..||.++..++|+-
T Consensus 162 NilI~G~TgSGKTTll~aL~~~ip~~ 187 (332)
T PRK13900 162 NIIISGGTSTGKTTFTNAALREIPAI 187 (332)
T ss_pred CEEEECCCCCCHHHHHHHHHHCCCCC
T ss_conf 19998888988999999998358953
No 492
>TIGR01846 type_I_sec_HlyB type I secretion system ATPase; InterPro: IPR010132 Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This entry contains one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N terminus, but rather carry signals located toward the extreme C terminus to direct type I secretion.; GO: 0005524 ATP binding, 0008565 protein transporter activity, 0015031 protein transport, 0016021 integral to membrane.
Probab=86.78 E-value=0.9 Score=24.67 Aligned_cols=26 Identities=31% Similarity=0.659 Sum_probs=17.1
Q ss_pred EEECCCCCEEEEEEECCCCCCCCCEEE-EECCCC
Q ss_conf 011475725999981698735584588-733556
Q gi|254780321|r 207 SWYNSYLGVMVLVRIINGQLTKGQSIR-LMGTNA 239 (606)
Q Consensus 207 s~~D~~~G~I~~~RV~sG~lk~Gd~I~-~~~~g~ 239 (606)
.|| |+-+ |.+|.|.+|+=|- ||=.|.
T Consensus 387 LWf----Ga~l---Vi~G~ls~G~LVAFNMlAG~ 413 (703)
T TIGR01846 387 LWF----GAHL---VIKGELSVGQLVAFNMLAGR 413 (703)
T ss_pred HHC----CCEE---EECCCCCHHHHHHHHHHCCC
T ss_conf 850----5147---76266774379987331363
No 493
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=86.70 E-value=0.59 Score=25.87 Aligned_cols=22 Identities=27% Similarity=0.492 Sum_probs=18.4
Q ss_pred EEEEECCCCCCHHHHHHHHHHH
Q ss_conf 7999801389877889999998
Q gi|254780321|r 13 NFSIVAHIDHGKSTLADRFIQH 34 (606)
Q Consensus 13 N~~IiaHvDhGKTTL~d~lL~~ 34 (606)
-++|+|+.++|||||...|+..
T Consensus 32 ~vaIvG~sGsGKSTLl~lL~gl 53 (275)
T cd03289 32 RVGLLGRTGSGKSTLLSAFLRL 53 (275)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 9999999999799999999603
No 494
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein; InterPro: IPR005285 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This family includes transporters, whose physiological function is not yet established. These proteins are thought to confer resistance to the chemicals cycloheximide and sulphomethuron methyl, BFA, azole antifungal agents, other antifungal agents: amorolfine and terbinafine. Some of them could serve as an efflux pump of various antibiotics..
Probab=86.68 E-value=0.32 Score=27.66 Aligned_cols=19 Identities=21% Similarity=0.394 Sum_probs=8.2
Q ss_pred EEECCCCCCHHHHHHHHHH
Q ss_conf 9980138987788999999
Q gi|254780321|r 15 SIVAHIDHGKSTLADRFIQ 33 (606)
Q Consensus 15 ~IiaHvDhGKTTL~d~lL~ 33 (606)
|+.|-.++|||||.|.|=+
T Consensus 857 ALMG~SGAGKTTLLn~La~ 875 (1466)
T TIGR00956 857 ALMGASGAGKTTLLNVLAE 875 (1466)
T ss_pred ECCCCCCCCHHHHHHHHHC
T ss_conf 5157887635788864433
No 495
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=86.64 E-value=0.57 Score=26.02 Aligned_cols=16 Identities=25% Similarity=0.403 Sum_probs=6.8
Q ss_pred EEEECCCCCCHHHHHH
Q ss_conf 9998013898778899
Q gi|254780321|r 14 FSIVAHIDHGKSTLAD 29 (606)
Q Consensus 14 ~~IiaHvDhGKTTL~d 29 (606)
+||+|+.++|||||+.
T Consensus 66 vaIVG~sGSGKSTLl~ 81 (282)
T cd03291 66 LAITGSTGSGKTSLLM 81 (282)
T ss_pred EEEECCCCCHHHHHHH
T ss_conf 9999999981999999
No 496
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=86.53 E-value=0.69 Score=25.43 Aligned_cols=24 Identities=17% Similarity=0.116 Sum_probs=18.6
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCC
Q ss_conf 799980138987788999999829805
Q gi|254780321|r 13 NFSIVAHIDHGKSTLADRFIQHCRGLT 39 (606)
Q Consensus 13 N~~IiaHvDhGKTTL~d~lL~~tg~i~ 39 (606)
=++|+|.-++|||||...| +|...
T Consensus 28 i~~iiGpnGaGKSTl~~~i---~Gl~~ 51 (213)
T cd03259 28 FLALLGPSGCGKTTLLRLI---AGLER 51 (213)
T ss_pred EEEEECCCCCHHHHHHHHH---HCCCC
T ss_conf 9999999997399999999---75999
No 497
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein; InterPro: IPR012693 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.; GO: 0005524 ATP binding, 0015416 phosphonate transmembrane-transporting ATPase activity, 0015716 phosphonate transport, 0016020 membrane.
Probab=86.48 E-value=0.81 Score=24.99 Aligned_cols=116 Identities=27% Similarity=0.371 Sum_probs=70.4
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCC---CCCC------CEEECCCHHHHHH-CCEEEEE--EEEEEEECCCCCEEEEE
Q ss_conf 999801389877889999998298054---4443------1130586779871-9505232--79999743788438999
Q gi|254780321|r 14 FSIVAHIDHGKSTLADRFIQHCRGLTE---REMS------SQVLDNMDIERER-GITIKAQ--TVRLNYTSTDAKDYQLN 81 (606)
Q Consensus 14 ~~IiaHvDhGKTTL~d~lL~~tg~i~~---~~~~------~~vlD~~~~EreR-GITIka~--~~~~~~~~~~~~~y~iN 81 (606)
++|||-.++|||||.=.+ +.+.+ ...+ +=.+|.-++-+.| |=-+... .+.|-|.+ +|
T Consensus 31 ~~~IG~SGAGKSTLLR~i----NrL~~Gdk~~~Geilidf~i~~~g~~i~~~~~~k~LR~~R~~igMIFQ~-------yN 99 (253)
T TIGR02315 31 VAVIGPSGAGKSTLLRCI----NRLVEGDKPSSGEILIDFSILLEGTDITKLRRGKKLRKLRRKIGMIFQH-------YN 99 (253)
T ss_pred EEEECCCCCCHHHHHHHH----HHHCCCCCCCCCEEEEEEEEEECCCHHHHHHHHHHHHHHHHHHCCEEHH-------HH
T ss_conf 999737887267999877----5302688887650898888887273187675488999997643501101-------02
Q ss_pred EEECC-----------CCC--------HH-HHHHHHHHHHC------CEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEE
Q ss_conf 96178-----------730--------02-79999999730------268999986878865589999999970996799
Q gi|254780321|r 82 LIDTP-----------GHV--------DF-TYEVSRSLSAC------EGSLLVVDATQGVEAQTLANVYQAIDNNHEIIT 135 (606)
Q Consensus 82 lIDTP-----------GH~--------DF-~~EV~r~l~a~------dgaiLvVdA~~Gvq~QT~~~~~~A~~~~l~~I~ 135 (606)
||+== |+. =| ..|-.+||.+. |-|.-=+|.=+|=|=|=++-. .|+.+.-.+|.
T Consensus 100 Li~R~~VL~NVL~GRLg~~~~~~~~~~~F~~~dk~~Al~~L~rVGl~~~A~~RaD~LSGGQQQRVaIA-RAL~Q~P~lIL 178 (253)
T TIGR02315 100 LIERLTVLENVLHGRLGYKSTWRSLLGRFSEEDKERALSLLERVGLADKAYQRADQLSGGQQQRVAIA-RALAQQPKLIL 178 (253)
T ss_pred CCCCCHHHHHHHHHHHCCCHHHHHHHCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCHHHHHHH-HHHCCCCCEEE
T ss_conf 37830366764214321450345563258998999999876523878898652132158511689999-86368995897
Q ss_pred EECCCCCCCC
Q ss_conf 8326788753
Q gi|254780321|r 136 VLNKADLPSA 145 (606)
Q Consensus 136 viNKiD~~~A 145 (606)
.|=|=|
T Consensus 179 ----ADEPiA 184 (253)
T TIGR02315 179 ----ADEPIA 184 (253)
T ss_pred ----ECCCCC
T ss_conf ----048843
No 498
>COG1192 Soj ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=86.47 E-value=2.3 Score=21.97 Aligned_cols=82 Identities=20% Similarity=0.249 Sum_probs=47.1
Q ss_pred CEEEEEEEECCCCCHHHHHHHHHHHHCCEEEEEEECCCCC---CHHHHHHHHHHHHCC---CC-EEEEECCCCCCCCCCC
Q ss_conf 4389999617873002799999997302689999868788---655899999999709---96-7998326788753211
Q gi|254780321|r 76 KDYQLNLIDTPGHVDFTYEVSRSLSACEGSLLVVDATQGV---EAQTLANVYQAIDNN---HE-IITVLNKADLPSADPD 148 (606)
Q Consensus 76 ~~y~iNlIDTPGH~DF~~EV~r~l~a~dgaiLvVdA~~Gv---q~QT~~~~~~A~~~~---l~-~I~viNKiD~~~A~~e 148 (606)
++|-+-|||||++..| ....+|.|+|.+++-+-+..=- ..+.........+.. +. ..+++|+.|.-.....
T Consensus 118 ~~yD~iiID~pp~l~~--l~~nal~asd~vliP~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 195 (259)
T COG1192 118 DDYDYIIIDTPPSLGV--LTLNALAAADHVLIPVQPEFLDLEGLEQLLNTLEDLLKLRRNKLIVVGILITRFDSRTKLAD 195 (259)
T ss_pred CCCCEEEECCCCCHHH--HHHHHHHHHCCEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCHHH
T ss_conf 6999899899986167--77999998275567047508689889999999999998524532325674353474201578
Q ss_pred CHHHHHHHHHH
Q ss_conf 33888775553
Q gi|254780321|r 149 RVKKQIEETIG 159 (606)
Q Consensus 149 ~v~~ei~~~~g 159 (606)
++.+++.+.++
T Consensus 196 ~~~~~~~~~~~ 206 (259)
T COG1192 196 EVLQELKQLLG 206 (259)
T ss_pred HHHHHHHHHCC
T ss_conf 99999997514
No 499
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=86.46 E-value=0.95 Score=24.52 Aligned_cols=53 Identities=17% Similarity=0.186 Sum_probs=0.0
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCCCCC-----CCEEECCCHHHHHHCCEEEEEEEEEE
Q ss_conf 999801389877889999998298054444-----31130586779871950523279999
Q gi|254780321|r 14 FSIVAHIDHGKSTLADRFIQHCRGLTEREM-----SSQVLDNMDIERERGITIKAQTVRLN 69 (606)
Q Consensus 14 ~~IiaHvDhGKTTL~d~lL~~tg~i~~~~~-----~~~vlD~~~~EreRGITIka~~~~~~ 69 (606)
+||+|+.++|||||.-.+ +|.....+. +.-+.+....|..|.|-.--|..++.
T Consensus 30 ~~ilGpSG~GKSTllr~i---~gl~~p~~G~I~i~g~~i~~~~~~~lrr~ig~vfQ~~~Lf 87 (242)
T cd03295 30 LVLIGPSGSGKTTTMKMI---NRLIEPTSGEIFIDGEDIREQDPVELRRKIGYVIQQIGLF 87 (242)
T ss_pred EEEECCCCCHHHHHHHHH---HCCCCCCCEEEEECCEECCCCCHHHHHCCCEEEECCCCCC
T ss_conf 999999995699999999---7599998159999999999999789738867991799758
No 500
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=86.43 E-value=0.59 Score=25.89 Aligned_cols=19 Identities=32% Similarity=0.403 Sum_probs=0.0
Q ss_pred EEEECCCCCCHHHHHHHHH
Q ss_conf 9998013898778899999
Q gi|254780321|r 14 FSIVAHIDHGKSTLADRFI 32 (606)
Q Consensus 14 ~~IiaHvDhGKTTL~d~lL 32 (606)
++|+|+.++|||||.-.|+
T Consensus 30 ~~IvG~sGsGKSTLl~~l~ 48 (218)
T cd03290 30 TMIVGQVGCGKSSLLLAIL 48 (218)
T ss_pred EEEECCCCCCHHHHHHHHH
T ss_conf 9999999980999999985
Done!