HHsearch alignment for GI: 254780321 and conserved domain: pfam09547
>pfam09547 Spore_IV_A Stage IV sporulation protein A (spore_IV_A). SpoIVA is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=92.47 E-value=0.86 Score=24.79 Aligned_cols=169 Identities=24% Similarity=0.363 Sum_probs=86.0
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCC---CCCCCEEECCCHHHHHHCCEEE--------EEEEEEEEECCCCCEEEEE
Q ss_conf 7999801389877889999998298054---4443113058677987195052--------3279999743788438999
Q gi|254780321|r 13 NFSIVAHIDHGKSTLADRFIQHCRGLTE---REMSSQVLDNMDIERERGITIK--------AQTVRLNYTSTDAKDYQLN 81 (606)
Q Consensus 13 N~~IiaHvDhGKTTL~d~lL~~tg~i~~---~~~~~~vlD~~~~EreRGITIk--------a~~~~~~~~~~~~~~y~iN 81 (606)
T Consensus 19 YiGVVGPVRTGKSTFIKrFMe~~-VlPnI~~~~~keRa~DELPQS-~aGktIMTTEPKFVP~eAv~I~l--~~~~~~kVR 94 (492)
T pfam09547 19 YIGVVGPVRTGKSTFIKRFMELL-VLPNIENEYKKERAKDELPQS-GSGKTIMTTEPKFVPNEAVEIKL--DDGLKFKVR 94 (492)
T ss_pred EEEEECCCCCCCHHHHHHHHHHH-CCCCCCCHHHHHHHHCCCCCC-CCCCCEECCCCCCCCCCCEEEEE--CCCCEEEEE
T ss_conf 99962672067366999999985-468889877877643037767-89981333688766531048883--698448999
Q ss_pred EEECCCCCH-------------------HHHHHHHHHHHC--------C-EEEEEEECCCC----------CCHHHHHHH
Q ss_conf 961787300-------------------279999999730--------2-68999986878----------865589999
Q gi|254780321|r 82 LIDTPGHVD-------------------FTYEVSRSLSAC--------E-GSLLVVDATQG----------VEAQTLANV 123 (606)
Q Consensus 82 lIDTPGH~D-------------------F~~EV~r~l~a~--------d-gaiLvVdA~~G----------vq~QT~~~~ 123 (606)
T Consensus 95 LiDCVGY~V~gA~Gy~e~~~~RmV~TPWfd~eIPF~eAAeiGT~KVI~dHSTIGiVVTTDGSi~dIpRe~Y~eAEer-vI 173 (492)
T pfam09547 95 LVDCVGYIVEGALGYEEEDGPRMVKTPWFDEEIPFEEAAEIGTRKVITEHSTIGLVVTTDGSITDIPRENYVEAEER-VI 173 (492)
T ss_pred EEEECCEEECCCCCCCCCCCCEEECCCCCCCCCCHHHHHHHCCCCEECCCCCEEEEEECCCCCCCCCHHHHHHHHHH-HH
T ss_conf 99652567557555546897513048987888786888764654133157714499956887567664442357999-99
Q ss_pred HHHHHCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH--HHCCCCCCHHHHHHHHHHHC
Q ss_conf 9999709967998326788753211338887755532232100011--10022320067877632100
Q gi|254780321|r 124 YQAIDNNHEIITVLNKADLPSADPDRVKKQIEETIGISTEDALLVS--AKTGEGIPLLLERIVQQLPS 189 (606)
Q Consensus 124 ~~A~~~~l~~I~viNKiD~~~A~~e~v~~ei~~~~g~~~~~ii~vS--AktG~GV~~LLd~Iv~~iP~ 189 (606)
T Consensus 174 ~ELk~i~KPFiillNs~~P~s~et~~L~~eL~ekY~v~---Vl~vnc~~m~~~DI~~Il~~vLyEFPV 238 (492)
T pfam09547 174 EELKEIGKPFIILLNSQRPYSEETKELRDELEEKYDVP---VLPVNCAQMTEEDITEILEEVLYEFPV 238 (492)
T ss_pred HHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCC---EEEEEHHHCCHHHHHHHHHHHHHCCCC
T ss_conf 99997099889998389989989999999999985995---799677975999999999998633882