HHsearch alignment for GI: 254780321 and conserved domain: smart00174

>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=99.31  E-value=6.9e-11  Score=92.59  Aligned_cols=157  Identities=23%  Similarity=0.252  Sum_probs=97.4

Q ss_pred             EEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHCCEEEE-EEEEEEEECCCCCEEEEEEEECCCCCHHH
Q ss_conf             99980138987788999999829805444431130586779871950523-27999974378843899996178730027
Q gi|254780321|r   14 FSIVAHIDHGKSTLADRFIQHCRGLTEREMSSQVLDNMDIERERGITIKA-QTVRLNYTSTDAKDYQLNLIDTPGHVDFT   92 (606)
Q Consensus        14 ~~IiaHvDhGKTTL~d~lL~~tg~i~~~~~~~~vlD~~~~EreRGITIka-~~~~~~~~~~~~~~y~iNlIDTPGH~DF~   92 (606)
T Consensus         1 ivllGd~~VGKTsli~r~~--~~~f~~~y-~--------------~Ti~~~~~~~~~---~~~~~~~l~i~DtaG~e~~~   60 (174)
T smart00174        1 LVVVGDGAVGKTCLLISYT--TNAFPEDY-V--------------PTVFENYSADVE---VDGKPVELGLWDTAGQEDYD   60 (174)
T ss_pred             EEEECCCCCCHHHHHHHHH--HCCCCCCC-C--------------CCEEEEEEEEEE---ECCEEEEEEEEECCCCCCCC
T ss_conf             5998978975999999995--39899985-7--------------850578999999---99999999999489870345


Q ss_pred             HHHHHHHHHCCEEEEEEECCCCCCHHHHHH-HHHHH---HCCCCEEEEECCCCCCCCCC----------CCHH-HHHHHH
Q ss_conf             999999973026899998687886558999-99999---70996799832678875321----------1338-887755
Q gi|254780321|r   93 YEVSRSLSACEGSLLVVDATQGVEAQTLAN-VYQAI---DNNHEIITVLNKADLPSADP----------DRVK-KQIEET  157 (606)
Q Consensus        93 ~EV~r~l~a~dgaiLvVdA~~Gvq~QT~~~-~~~A~---~~~l~~I~viNKiD~~~A~~----------e~v~-~ei~~~  157 (606)
T Consensus        61 ~l~~~~~~~a~~~ilvydvt~~~Sf~~~~~~w~~~i~~~~~~~piilVgnK~DL~~~~~~~~~~~~~~~~~Vs~~~~~~~  140 (174)
T smart00174       61 RLRPLSYPDTDVFLICFSVDSPASFENVKEKWYPEVKHFCPNTPIILVGTKLDLREDKSTLRELSKQKQEPVTYEQGEAL  140 (174)
T ss_pred             CCCHHHCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCHHHHHHH
T ss_conf             45001104886899997589878999999989999998688986999987542501233354553314650029999999


Q ss_pred             H-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCC
Q ss_conf             5-32232100011100223200678776321000
Q gi|254780321|r  158 I-GISTEDALLVSAKTGEGIPLLLERIVQQLPSP  190 (606)
Q Consensus       158 ~-g~~~~~ii~vSAktG~GV~~LLd~Iv~~iP~P  190 (606)
T Consensus       141 a~~~~~~~y~EtSAk~g~nV~e~F~~l~r~~l~p  174 (174)
T smart00174      141 AKRIGAVKYLECSALTQEGVREVFEEAIRAALNP  174 (174)
T ss_pred             HHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHCC
T ss_conf             9983997899964588949899999999997294