HHsearch alignment for GI: 254780321 and conserved domain: smart00178
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.26 E-value=2.2e-10 Score=89.22 Aligned_cols=153 Identities=16% Similarity=0.179 Sum_probs=102.8
Q ss_pred HHCEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHCCEEEEEEEEEEEECCCCCEEEEEEEECCCC
Q ss_conf 25317999801389877889999998298054444311305867798719505232799997437884389999617873
Q gi|254780321|r 9 SRIRNFSIVAHIDHGKSTLADRFIQHCRGLTEREMSSQVLDNMDIERERGITIKAQTVRLNYTSTDAKDYQLNLIDTPGH 88 (606)
Q Consensus 9 ~~IRN~~IiaHvDhGKTTL~d~lL~~tg~i~~~~~~~~vlD~~~~EreRGITIka~~~~~~~~~~~~~~y~iNlIDTPGH 88 (606)
T Consensus 15 ~ke~~ililGLd~aGKTTil~~lk--~~~~~~---------~~-------PT~g~~~e~~~~-----~~~~~~~wDlgG~ 71 (184)
T smart00178 15 NKHAKILFLGLDNAGKTTLLHMLK--NDRLAQ---------HQ-------PTQHPTSEELAI-----GNIKFTTFDLGGH 71 (184)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHH--CCCCCC---------CC-------CCCCCCEEEEEE-----CCEEEEEEECCCC
T ss_conf 661479999658898899999980--699753---------05-------787886489999-----9999999988987
Q ss_pred CHHHHHHHHHHHHCCEEEEEEECCCCC-CHHHHHHHHHHH----HCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHH---
Q ss_conf 002799999997302689999868788-655899999999----709967998326788753211338887755532---
Q gi|254780321|r 89 VDFTYEVSRSLSACEGSLLVVDATQGV-EAQTLANVYQAI----DNNHEIITVLNKADLPSADPDRVKKQIEETIGI--- 160 (606)
Q Consensus 89 ~DF~~EV~r~l~a~dgaiLvVdA~~Gv-q~QT~~~~~~A~----~~~l~~I~viNKiD~~~A~~e~v~~ei~~~~g~--- 160 (606)
T Consensus 72 ~~~R~lW~~Yy~~~~~iIfVVDssD~~r~~eak~~L~~ll~~~~l~~~PlLilaNKqDl~~a~~~---~ei~~~L~L~~~ 148 (184)
T smart00178 72 QQARRLWKDYFPEVNGIVYLVDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAPYAASE---DELRYALGLTNT 148 (184)
T ss_pred HHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCH---HHHHHHHCCHHH
T ss_conf 77889999882167589999726868899999999999864676559709999975677789999---999988195123
Q ss_pred ---------HHHHHHHHHHHCCCCCCHHHHHHHHHH
Q ss_conf ---------232100011100223200678776321
Q gi|254780321|r 161 ---------STEDALLVSAKTGEGIPLLLERIVQQL 187 (606)
Q Consensus 161 ---------~~~~ii~vSAktG~GV~~LLd~Iv~~i 187 (606)
T Consensus 149 ~~~~~~~~~r~~~i~~~SA~tG~Gl~egl~WLs~~i 184 (184)
T smart00178 149 TGSKGKVGVRPLEVFMCSVVRRMGYGEGFKWLSQYI 184 (184)
T ss_pred HCCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHC
T ss_conf 265576677631999735607978699999998409