RPSBLAST alignment for GI: 254780321 and conserved domain: TIGR00491
>gnl|CDD|129582 TIGR00491, aIF-2, translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region. Length = 590
Score = 51.0 bits (122), Expect = 9e-07
Identities = 67/291 (23%), Positives = 116/291 (39%), Gaps = 62/291 (21%)
Query: 15 SIVAHIDHGKSTLADRFIQHCR-------GLTEREMSSQVLDNMD-IERERGITIKAQTV 66
S++ H+DHGK+TL D+ I+ G+T+ ++++ MD IE G +K +
Sbjct: 8 SVLGHVDHGKTTLLDK-IRGSAVAKREAGGITQHIGATEI--PMDVIEGICGDLLKKFKI 64
Query: 67 RLNYTSTDAKDYQLNLIDTPGHVDFTYEVSRSLSACEGSLLVVDATQGVEAQTL------ 120
RL L IDTPGH FT R + + ++L+VD +G + QT
Sbjct: 65 RLKIPG-------LLFIDTPGHEAFTNLRKRGGALADLAILIVDINEGFKPQTQEALNIL 117
Query: 121 ----------ANVYQAID--NNHE---IITVLNKADLPSADPDRVKKQIEETIGI----- 160
AN I +HE + +K ++ + ++ +
Sbjct: 118 RMYKTPFVVAANKIDRIPGWRSHEGRPFMESFSKQEIQVQ--QNLDTKVYNLVIKLHEEG 175
Query: 161 -------------STEDALLVSAKTGEGIPLLLERIV---QQLPSPTSPEGANAPLKALL 204
T + +SA TGEGIP LL + QQ P + +
Sbjct: 176 FEAERFDRVTDFTKTVAIIPISAITGEGIPELLTMLAGLAQQYLEEQLKLEEEGPARGTI 235
Query: 205 IDSWYNSYLGVMVLVRIINGQLTKGQSIRLMGTNAKYQVERIGILTPKMID 255
++ + LG+ + I +G L KG +I + G++ +L P+ ++
Sbjct: 236 LEVKEETGLGMTIDAVIYDGILRKGDTIAMAGSDDVIVTRVRALLKPRPLE 286