RPSBLAST alignment for GI: 254780321 and conserved domain: TIGR00491

>gnl|CDD|129582 TIGR00491, aIF-2, translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region. Length = 590
 Score = 51.0 bits (122), Expect = 9e-07
 Identities = 67/291 (23%), Positives = 116/291 (39%), Gaps = 62/291 (21%)

Query: 15  SIVAHIDHGKSTLADRFIQHCR-------GLTEREMSSQVLDNMD-IERERGITIKAQTV 66
           S++ H+DHGK+TL D+ I+          G+T+   ++++   MD IE   G  +K   +
Sbjct: 8   SVLGHVDHGKTTLLDK-IRGSAVAKREAGGITQHIGATEI--PMDVIEGICGDLLKKFKI 64

Query: 67  RLNYTSTDAKDYQLNLIDTPGHVDFTYEVSRSLSACEGSLLVVDATQGVEAQTL------ 120
           RL           L  IDTPGH  FT    R  +  + ++L+VD  +G + QT       
Sbjct: 65  RLKIPG-------LLFIDTPGHEAFTNLRKRGGALADLAILIVDINEGFKPQTQEALNIL 117

Query: 121 ----------ANVYQAID--NNHE---IITVLNKADLPSADPDRVKKQIEETIGI----- 160
                     AN    I    +HE    +   +K ++       +  ++   +       
Sbjct: 118 RMYKTPFVVAANKIDRIPGWRSHEGRPFMESFSKQEIQVQ--QNLDTKVYNLVIKLHEEG 175

Query: 161 -------------STEDALLVSAKTGEGIPLLLERIV---QQLPSPTSPEGANAPLKALL 204
                         T   + +SA TGEGIP LL  +    QQ            P +  +
Sbjct: 176 FEAERFDRVTDFTKTVAIIPISAITGEGIPELLTMLAGLAQQYLEEQLKLEEEGPARGTI 235

Query: 205 IDSWYNSYLGVMVLVRIINGQLTKGQSIRLMGTNAKYQVERIGILTPKMID 255
           ++    + LG+ +   I +G L KG +I + G++         +L P+ ++
Sbjct: 236 LEVKEETGLGMTIDAVIYDGILRKGDTIAMAGSDDVIVTRVRALLKPRPLE 286