RPSBLAST alignment for GI: 254780321 and conserved domain: cd01342
>gnl|CDD|58078 cd01342, Translation_Factor_II_like, Translation_Factor_II_like: Elongation factor Tu (EF-Tu) domain II-like proteins. Elongation factor Tu consists of three structural domains, this family represents the second domain. Domain II adopts a beta barrel structure and is involved in binding to charged tRNA. Domain II is found in other proteins such as elongation factor G and translation initiation factor IF-2. This group also includes the C2 subdomain of domain IV of IF-2 that has the same fold as domain II of (EF-Tu). Like IF-2 from certain prokaryotes such as Thermus thermophilus, mitochondrial IF-2 lacks domain II, which is thought to be involved in binding of E.coli IF-2 to 30S subunits.. Length = 83
Score = 51.5 bits (123), Expect = 6e-07
Identities = 18/86 (20%), Positives = 41/86 (47%), Gaps = 3/86 (3%)
Query: 200 LKALLIDSWYNSYLGVMVLVRIINGQLTKGQSIRLMGTNAKYQVERIGILTPKMIDIEAL 259
L+AL+ + + G + R+ +G L KG +R+ + + + +++
Sbjct: 1 LRALVFKVFKDKGRGTVATGRVESGTLKKGDKVRVGPGGGGVKGKVKSLKRF-KGEVDEA 59
Query: 260 YPGEIGVMIASIKEVSHTRVGDTITD 285
G+I ++ +K+ ++GDT+TD
Sbjct: 60 VAGDIVGIV--LKDKDDIKIGDTLTD 83