254780322
SAM-dependent methyltransferase protein
| GeneID in NCBI database: | 8209307 | Locus tag: | CLIBASIA_01035 |
| Protein GI in NCBI database: | 254780322 | Protein Accession: | YP_003064735.1 |
| Gene range: | +(214734, 215555) | Protein Length: | 273aa |
| Gene description: | SAM-dependent methyltransferase protein | ||
| COG prediction: | [Q] [R] SAM-dependent methyltransferases | ||
| KEGG prediction: | SAM-dependent methyltransferase protein | ||
| SEED prediction: | probable SAM-dependent methyltransferase protein | ||
| Pathway involved in KEGG: | not defined | ||
| Subsystem involved in SEED: | - none - | ||
| sequence | sequence profile | ||
Prediction of Local Sequence Properties
| Source | Summary | Result |
|---|
|
|
Close Homologs Detected by BLAST or PSI-BLAST
Homolog within the Genome Detected by BLAST
Original result of BLAST against C. L. asiaticus genome
No hits with e-value below 0.05
Close Homologs Detected BLAST or PSI-BLAST in the First 2 Iterations
Original result of PSI-BLAST first 2 iterations
| Identity | Alignment graph | Length | Definition | Round | E-value |
| Target | 273 | SAM-dependent methyltransferase protein [Candidatus Lib | |||
| 315122253 | 274 | SAM-dependent methyltransferase protein [Candidatus Lib | 1 | 1e-120 | |
| 86359348 | 294 | SAM-dependent methyltransferase protein [Rhizobium etli | 1 | 3e-73 | |
| 222087311 | 294 | SAM-dependent methyltransferase protein [Agrobacterium | 1 | 8e-70 | |
| 159185777 | 293 | methyltransferase [Agrobacterium tumefaciens str. C58] | 1 | 2e-69 | |
| 209551109 | 294 | methyltransferase protein [Rhizobium leguminosarum bv. | 1 | 3e-68 | |
| 190893599 | 294 | methyltransferase [Rhizobium etli CIAT 652] Length = 29 | 1 | 4e-68 | |
| 241206510 | 294 | methyltransferase protein [Rhizobium leguminosarum bv. | 1 | 8e-68 | |
| 327193401 | 294 | putative methyltransferase protein [Rhizobium etli CNPA | 1 | 9e-68 | |
| 332716311 | 509 | methyltransferase [Agrobacterium sp. H13-3] Length = 50 | 1 | 1e-67 | |
| 116254027 | 294 | hypothetical protein RL4291 [Rhizobium leguminosarum bv | 1 | 3e-67 |
| >gi|315122253|ref|YP_004062742.1| SAM-dependent methyltransferase protein [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 274 | Back alignment and organism information |
|---|
Score = 436 bits (1121), Expect = e-120, Method: Compositional matrix adjust.
Identities = 208/268 (77%), Positives = 235/268 (87%)
Query: 1 MNILFDMQLINRNRLRSFRQKDFSVYFLLDRVAKEIAFRLNMINQTFENALELHGITGIV 60
MN+LFDMQLIN+NRLRS RQKDFS +FLLD VAKEI+FRLNMIN+TF+NA+ELHG TGIV
Sbjct: 1 MNLLFDMQLINKNRLRSLRQKDFSSHFLLDIVAKEISFRLNMINKTFDNAMELHGATGIV 60
Query: 61 GYTCMETKKIHRMIRAEISTEFSTLKREVISCPLEEIPSISQSVDLILSPLNLHIINDTL 120
G TCM+T+KI RMIR EISTEFST V++CPLE+IPSI Q +DLILSPL LHIINDTL
Sbjct: 61 GRTCMKTQKISRMIRTEISTEFSTSDNTVLACPLEDIPSIPQPIDLILSPLTLHIINDTL 120
Query: 121 EMFSKINHMLKPGGMFLAAIPGIGTLHELRKALLKAETELTGGASPRVIPFMDIKSAGTL 180
MF KI + LK GG+FLAAIPG+GTL ELRK+LL+AETE+TGGASPR+IPFMDIKSAG L
Sbjct: 121 GMFLKIKNTLKRGGVFLAAIPGVGTLRELRKSLLQAETEITGGASPRIIPFMDIKSAGAL 180
Query: 181 MEKSGFISPIIDQDTYTVYYKSMLHLMHDLRGMGMSNPLIRRSKTPPYKSLFKRASTIYT 240
M+K+GFISPIIDQD YTVYYKSM HLMHDLR MGMSNPLI RS TPP KSLF RA+ IY
Sbjct: 181 MQKAGFISPIIDQDNYTVYYKSMFHLMHDLRKMGMSNPLIHRSTTPPKKSLFTRAAEIYA 240
Query: 241 EENSDLTGNVTASFSIIYVMGWKSTTFK 268
EENS+ TGNVTA+FSIIYV+GWKS+ K
Sbjct: 241 EENSESTGNVTANFSIIYVIGWKSSASK 268
|
Species: Candidatus Liberibacter solanacearum Genus: Candidatus Liberibacter Family: Rhizobiaceae Order: Rhizobiales Class: Alphaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
| >gi|86359348|ref|YP_471240.1| SAM-dependent methyltransferase protein [Rhizobium etli CFN 42] Length = 294 | Back alignment and organism information |
|---|
Score = 279 bits (714), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 134/262 (51%), Positives = 172/262 (65%)
Query: 1 MNILFDMQLINRNRLRSFRQKDFSVYFLLDRVAKEIAFRLNMINQTFENALELHGITGIV 60
M +FD LI +R R+ D FLLD A+E+A RL+++ + FE A+ELHG+TG
Sbjct: 1 METIFDRALIAAHRHRALVNNDLKAAFLLDIAAEEMAERLDVVERRFETAVELHGMTGAA 60
Query: 61 GYTCMETKKIHRMIRAEISTEFSTLKREVISCPLEEIPSISQSVDLILSPLNLHIINDTL 120
M T KI MIR E ++ +I PLEE+P QS +LIL+PL+LH+ NDT
Sbjct: 61 ARAAMTTGKIGTMIRVESEKAYAGPGETLIEAPLEEVPLAPQSANLILAPLSLHLTNDTP 120
Query: 121 EMFSKINHMLKPGGMFLAAIPGIGTLHELRKALLKAETELTGGASPRVIPFMDIKSAGTL 180
+F +I LKP G+FLAAIPG TL ELR LL AE E+TGGASPRVIPF D++ G+L
Sbjct: 121 GVFIQIRRALKPDGLFLAAIPGASTLQELRDVLLAAEVEMTGGASPRVIPFADVRDVGSL 180
Query: 181 MEKSGFISPIIDQDTYTVYYKSMLHLMHDLRGMGMSNPLIRRSKTPPYKSLFKRASTIYT 240
M+++GF P+ID + YTV Y S+ LMHDLR MGMSNPL RS+ P ++ F RA+ IY
Sbjct: 181 MQRAGFTLPVIDAENYTVRYDSLFPLMHDLRAMGMSNPLAARSRMPLTRAFFLRAAEIYA 240
Query: 241 EENSDLTGNVTASFSIIYVMGW 262
E SD G + A+FSIIYV GW
Sbjct: 241 ERYSDPDGRIRATFSIIYVSGW 262
|
Species: Rhizobium etli Genus: Rhizobium Family: Rhizobiaceae Order: Rhizobiales Class: Alphaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
| >gi|222087311|ref|YP_002545848.1| SAM-dependent methyltransferase protein [Agrobacterium radiobacter K84] Length = 294 | Back alignment and organism information |
|---|
Score = 268 bits (684), Expect = 8e-70, Method: Compositional matrix adjust.
Identities = 125/262 (47%), Positives = 175/262 (66%)
Query: 1 MNILFDMQLINRNRLRSFRQKDFSVYFLLDRVAKEIAFRLNMINQTFENALELHGITGIV 60
M+I+FD L+ R R+ +Q D FLL+ A+E+A RL++I + F+ A+ELHG TGI
Sbjct: 1 MDIVFDQSLLAARRHRALKQGDTKAAFLLEIAARELAERLSVIERHFDEAIELHGATGIA 60
Query: 61 GYTCMETKKIHRMIRAEISTEFSTLKREVISCPLEEIPSISQSVDLILSPLNLHIINDTL 120
+ T KI + R E F+ E+I PLEE+P ++SV+L+LSPL+LH+ NDT
Sbjct: 61 AREALATGKIGHIRRIEGEAGFAAPGEELIKAPLEELPLAAESVNLVLSPLSLHVTNDTP 120
Query: 121 EMFSKINHMLKPGGMFLAAIPGIGTLHELRKALLKAETELTGGASPRVIPFMDIKSAGTL 180
+F ++ LK G+FLAAIPG+GTL ELR LL E ELTGGASPRVIPF +++ G L
Sbjct: 121 GVFIQVRRALKADGLFLAAIPGLGTLQELRDVLLATEIELTGGASPRVIPFAEVRDVGGL 180
Query: 181 MEKSGFISPIIDQDTYTVYYKSMLHLMHDLRGMGMSNPLIRRSKTPPYKSLFKRASTIYT 240
++++GF P+ID ++YTV Y ++ LM DLR MGM+NPL RS+ P ++ F RA+ +Y
Sbjct: 181 LQRAGFTLPVIDAESYTVRYDNLFALMRDLRAMGMTNPLADRSRKPLTRAFFLRAAELYA 240
Query: 241 EENSDLTGNVTASFSIIYVMGW 262
E SD G + A+F+IIY GW
Sbjct: 241 ERYSDPDGRIRATFTIIYASGW 262
|
Species: Agrobacterium tumefaciens Genus: Agrobacterium Family: Rhizobiaceae Order: Rhizobiales Class: Alphaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
| >gi|159185777|ref|NP_357097.2| methyltransferase [Agrobacterium tumefaciens str. C58] Length = 293 | Back alignment and organism information |
|---|
Score = 266 bits (680), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 128/262 (48%), Positives = 170/262 (64%)
Query: 1 MNILFDMQLINRNRLRSFRQKDFSVYFLLDRVAKEIAFRLNMINQTFENALELHGITGIV 60
M+ILFD LI +NR R++ ++D FLLD A+E+A RL ++ + FE A+ELHG TG+
Sbjct: 1 MDILFDQALIEQNRRRAWTRRDDKALFLLDMAAEELADRLAIVERKFETAIELHGGTGVT 60
Query: 61 GYTCMETKKIHRMIRAEISTEFSTLKREVISCPLEEIPSISQSVDLILSPLNLHIINDTL 120
ET K+ + R E + F+T + +E +P S +LI+SPL LH+ NDT
Sbjct: 61 ARRLAETGKVDNIRRIETESAFATDGNIPETASMEHLPLAEASANLIVSPLALHLTNDTP 120
Query: 121 EMFSKINHMLKPGGMFLAAIPGIGTLHELRKALLKAETELTGGASPRVIPFMDIKSAGTL 180
+I LKP G+FL AIPG GTLHELR LL AE ELTGGASPRVIPF D++ G L
Sbjct: 121 GALIQIRRALKPDGLFLGAIPGSGTLHELRDVLLTAEAELTGGASPRVIPFADVRDVGAL 180
Query: 181 MEKSGFISPIIDQDTYTVYYKSMLHLMHDLRGMGMSNPLIRRSKTPPYKSLFKRASTIYT 240
++++GF P+ D +TYTV Y S+ LM DLR MGM+NPL RS+ P ++ F RA+ +Y
Sbjct: 181 LQRAGFALPVTDAETYTVRYDSIFPLMRDLRAMGMANPLASRSRKPLNRAFFLRAAELYA 240
Query: 241 EENSDLTGNVTASFSIIYVMGW 262
E SD G + A+FSIIYV GW
Sbjct: 241 ERYSDPDGRIRATFSIIYVSGW 262
|
Species: Agrobacterium tumefaciens Genus: Agrobacterium Family: Rhizobiaceae Order: Rhizobiales Class: Alphaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
| >gi|209551109|ref|YP_002283026.1| methyltransferase protein [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 294 | Back alignment and organism information |
|---|
Score = 262 bits (670), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 133/262 (50%), Positives = 172/262 (65%)
Query: 1 MNILFDMQLINRNRLRSFRQKDFSVYFLLDRVAKEIAFRLNMINQTFENALELHGITGIV 60
M +FD LI +R R+ D FLLD A+E+A RL ++ +TFE A+ELHG TG
Sbjct: 1 METIFDKTLIAAHRHRALANNDPKAAFLLDIAAEEMAERLAVVERTFETAVELHGATGAA 60
Query: 61 GYTCMETKKIHRMIRAEISTEFSTLKREVISCPLEEIPSISQSVDLILSPLNLHIINDTL 120
+ T KI M+R E T ++ +I PLE++P QS +LIL+PL+LH+ NDT
Sbjct: 61 ARAALATGKIGTMMRVESETAYAAQGETLIEAPLEDVPLEPQSANLILAPLSLHLTNDTP 120
Query: 121 EMFSKINHMLKPGGMFLAAIPGIGTLHELRKALLKAETELTGGASPRVIPFMDIKSAGTL 180
+F +I LKP G+FLAAIPG GTL ELR LL AE E+TGGASPRVIPF D++ G+L
Sbjct: 121 GVFIQIRRALKPDGLFLAAIPGAGTLQELRDVLLAAEVEMTGGASPRVIPFADVRDVGSL 180
Query: 181 MEKSGFISPIIDQDTYTVYYKSMLHLMHDLRGMGMSNPLIRRSKTPPYKSLFKRASTIYT 240
M+++GF P+ID + YTV Y S+ LM DLR MGMSNPL RS+ P ++ F RA+ IY
Sbjct: 181 MQRAGFTLPVIDAENYTVRYDSLFPLMRDLRAMGMSNPLAARSRMPLTRAFFLRAAEIYA 240
Query: 241 EENSDLTGNVTASFSIIYVMGW 262
E SD G + A+FSIIYV GW
Sbjct: 241 ERYSDPDGRIRATFSIIYVSGW 262
|
Species: Rhizobium leguminosarum Genus: Rhizobium Family: Rhizobiaceae Order: Rhizobiales Class: Alphaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
| >gi|190893599|ref|YP_001980141.1| methyltransferase [Rhizobium etli CIAT 652] Length = 294 | Back alignment and organism information |
|---|
Score = 262 bits (670), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 134/264 (50%), Positives = 172/264 (65%)
Query: 1 MNILFDMQLINRNRLRSFRQKDFSVYFLLDRVAKEIAFRLNMINQTFENALELHGITGIV 60
M ++FD LI +R R+ D FLLD A+E+A RL ++ + FE A+ELHG TG
Sbjct: 1 MEMIFDRALIAAHRHRALVNNDPKAAFLLDIAAEEMAERLAVVERRFETAVELHGTTGAA 60
Query: 61 GYTCMETKKIHRMIRAEISTEFSTLKREVISCPLEEIPSISQSVDLILSPLNLHIINDTL 120
M T KI MIR E ++ I PLE++P QS +LIL+PL+LH+ NDT
Sbjct: 61 ARAAMATGKIGTMIRVESEKAYAASSESFIEAPLEDVPLDPQSANLILAPLSLHLTNDTP 120
Query: 121 EMFSKINHMLKPGGMFLAAIPGIGTLHELRKALLKAETELTGGASPRVIPFMDIKSAGTL 180
+F +I LKP G+FLAAIPG GTL ELR ALL AE E+TGGASPRVIPF D++ G+L
Sbjct: 121 GVFIQIRRALKPDGLFLAAIPGAGTLQELRDALLTAEVEMTGGASPRVIPFADVRDVGSL 180
Query: 181 MEKSGFISPIIDQDTYTVYYKSMLHLMHDLRGMGMSNPLIRRSKTPPYKSLFKRASTIYT 240
M+++GF P+ID +TYTV Y S+ LM DLR MGMSNPL R + P ++ F RA+ IY
Sbjct: 181 MQRAGFTLPVIDAETYTVRYDSLFPLMRDLRAMGMSNPLAARGRMPLTRAFFLRAAEIYA 240
Query: 241 EENSDLTGNVTASFSIIYVMGWKS 264
E SD G + A+FSIIYV GW +
Sbjct: 241 ERYSDPDGRIRATFSIIYVSGWAA 264
|
Species: Rhizobium etli Genus: Rhizobium Family: Rhizobiaceae Order: Rhizobiales Class: Alphaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
| >gi|241206510|ref|YP_002977606.1| methyltransferase protein [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 294 | Back alignment and organism information |
|---|
Score = 261 bits (667), Expect = 8e-68, Method: Compositional matrix adjust.
Identities = 132/264 (50%), Positives = 173/264 (65%)
Query: 1 MNILFDMQLINRNRLRSFRQKDFSVYFLLDRVAKEIAFRLNMINQTFENALELHGITGIV 60
M +FD LI +R R+ D FLLD A+E+A RL+++ +TFE A+ELHG TG
Sbjct: 1 METIFDRALIAAHRRRALVNNDPKAAFLLDIAAEEMAERLSVVERTFETAVELHGATGAA 60
Query: 61 GYTCMETKKIHRMIRAEISTEFSTLKREVISCPLEEIPSISQSVDLILSPLNLHIINDTL 120
+ T KI MIR E ++ +I PLE++P QSV+LIL+PL+LH+ NDT
Sbjct: 61 ARAALATGKIGTMIRVESDKAYAGPGENLIEAPLEDVPLEPQSVNLILAPLSLHLTNDTP 120
Query: 121 EMFSKINHMLKPGGMFLAAIPGIGTLHELRKALLKAETELTGGASPRVIPFMDIKSAGTL 180
+F +I LKP G+FLAAIPG GTL ELR+ LL AE E+TGGASPRVIPF D++ G L
Sbjct: 121 GVFIQIRRALKPDGLFLAAIPGAGTLQELREVLLAAEVEMTGGASPRVIPFADVRDVGNL 180
Query: 181 MEKSGFISPIIDQDTYTVYYKSMLHLMHDLRGMGMSNPLIRRSKTPPYKSLFKRASTIYT 240
M+++GF P+ID + YTV Y S+ LM DLR MGMSNPL R + P ++ F RA+ IY
Sbjct: 181 MQRAGFTLPVIDAENYTVRYDSLFPLMRDLRAMGMSNPLAARGRMPLTRAFFLRAAEIYA 240
Query: 241 EENSDLTGNVTASFSIIYVMGWKS 264
E +D G + A+FSIIYV GW +
Sbjct: 241 ERYADPDGRIRATFSIIYVSGWAA 264
|
Species: Rhizobium leguminosarum Genus: Rhizobium Family: Rhizobiaceae Order: Rhizobiales Class: Alphaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
| >gi|327193401|gb|EGE60301.1| putative methyltransferase protein [Rhizobium etli CNPAF512] Length = 294 | Back alignment and organism information |
|---|
Score = 261 bits (666), Expect = 9e-68, Method: Compositional matrix adjust.
Identities = 133/264 (50%), Positives = 171/264 (64%)
Query: 1 MNILFDMQLINRNRLRSFRQKDFSVYFLLDRVAKEIAFRLNMINQTFENALELHGITGIV 60
M +FD LI +R R+ D FLLD A+E+A RL ++ + FE A+ELHG TG
Sbjct: 1 METIFDRALIAAHRHRALVNNDPKAAFLLDIAAEEMAERLAVVERRFETAVELHGTTGAA 60
Query: 61 GYTCMETKKIHRMIRAEISTEFSTLKREVISCPLEEIPSISQSVDLILSPLNLHIINDTL 120
M T KI +MIR E ++ I PLE++P QS +LIL+PL+LH+ NDT
Sbjct: 61 ARAAMATGKIGKMIRVESEKAYAASSESFIEAPLEDVPLDPQSANLILAPLSLHLTNDTP 120
Query: 121 EMFSKINHMLKPGGMFLAAIPGIGTLHELRKALLKAETELTGGASPRVIPFMDIKSAGTL 180
+F +I LKP G+FLA IPG GTL ELR ALL AE E+TGGASPRVIPF D++ G+L
Sbjct: 121 GVFIQIRRALKPDGLFLAGIPGAGTLQELRDALLTAEVEMTGGASPRVIPFADVRDVGSL 180
Query: 181 MEKSGFISPIIDQDTYTVYYKSMLHLMHDLRGMGMSNPLIRRSKTPPYKSLFKRASTIYT 240
M+++GF P+ID +TYTV Y S+ LM DLR MGMSNPL R + P ++ F RA+ IY
Sbjct: 181 MQRAGFTLPVIDAETYTVRYDSLFPLMRDLRAMGMSNPLAARGRMPLTRTFFLRAAEIYA 240
Query: 241 EENSDLTGNVTASFSIIYVMGWKS 264
E SD G + A+FSIIYV GW +
Sbjct: 241 ERYSDPDGRIRATFSIIYVSGWAA 264
|
Species: Rhizobium etli Genus: Rhizobium Family: Rhizobiaceae Order: Rhizobiales Class: Alphaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
| >gi|332716311|ref|YP_004443777.1| methyltransferase [Agrobacterium sp. H13-3] Length = 509 | Back alignment and organism information |
|---|
Score = 260 bits (665), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 128/262 (48%), Positives = 166/262 (63%)
Query: 1 MNILFDMQLINRNRLRSFRQKDFSVYFLLDRVAKEIAFRLNMINQTFENALELHGITGIV 60
M+ILFD LI +NR R++ ++D FLLD A E A RL ++ + FE A+ELHG TGI
Sbjct: 217 MDILFDQALIEQNRRRAWNRRDDKALFLLDMAADEFADRLAIVERRFETAIELHGGTGIT 276
Query: 61 GYTCMETKKIHRMIRAEISTEFSTLKREVISCPLEEIPSISQSVDLILSPLNLHIINDTL 120
ET K+ + R E T F+T +E +P S +LI+SPL LH+ NDT
Sbjct: 277 ARRVTETGKVDAIRRIETDTSFATDGNLPQVASMEHLPLEEASANLIVSPLALHLTNDTP 336
Query: 121 EMFSKINHMLKPGGMFLAAIPGIGTLHELRKALLKAETELTGGASPRVIPFMDIKSAGTL 180
+I LKP G+FL AIPG GTL ELR LL AE ELTGGASPRVIPF D++ G L
Sbjct: 337 GALIQIRRALKPDGLFLGAIPGSGTLQELRDVLLTAEAELTGGASPRVIPFADVRDVGAL 396
Query: 181 MEKSGFISPIIDQDTYTVYYKSMLHLMHDLRGMGMSNPLIRRSKTPPYKSLFKRASTIYT 240
++++GF P+ D ++YTV Y S+ LM DLR MGM+NPL RS+ P ++ F RA+ +Y
Sbjct: 397 LQRAGFALPVTDAESYTVRYDSIFPLMRDLRAMGMANPLASRSRKPLNRAFFLRAAELYA 456
Query: 241 EENSDLTGNVTASFSIIYVMGW 262
E SD G + A+FSIIYV GW
Sbjct: 457 ERYSDPDGRIRATFSIIYVSGW 478
|
Species: Agrobacterium sp. H13-3 Genus: Agrobacterium Family: Rhizobiaceae Order: Rhizobiales Class: Alphaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
| >gi|116254027|ref|YP_769865.1| hypothetical protein RL4291 [Rhizobium leguminosarum bv. viciae 3841] Length = 294 | Back alignment and organism information |
|---|
Score = 259 bits (662), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 131/264 (49%), Positives = 173/264 (65%)
Query: 1 MNILFDMQLINRNRLRSFRQKDFSVYFLLDRVAKEIAFRLNMINQTFENALELHGITGIV 60
M +FD LI +R R+ D FLLD A+E+ RL+++ +TFE A+ELHG TG
Sbjct: 1 METIFDRALIAAHRHRALANNDPKAAFLLDIAAEEMGERLSVVERTFETAVELHGATGAA 60
Query: 61 GYTCMETKKIHRMIRAEISTEFSTLKREVISCPLEEIPSISQSVDLILSPLNLHIINDTL 120
+ T KI MIR E ++ + +I PLE++P QS +LIL+PL+LH+ NDT
Sbjct: 61 ARAALATGKIGTMIRVESEKAYAGPHQILIEAPLEDVPLEPQSANLILAPLSLHLTNDTP 120
Query: 121 EMFSKINHMLKPGGMFLAAIPGIGTLHELRKALLKAETELTGGASPRVIPFMDIKSAGTL 180
+F +I LKP G+FLAAIPG GTL ELR LL AE E+TGGASPRVIPF D++ G+L
Sbjct: 121 GVFIQIRRALKPDGLFLAAIPGAGTLQELRDVLLAAEVEMTGGASPRVIPFADVRDVGSL 180
Query: 181 MEKSGFISPIIDQDTYTVYYKSMLHLMHDLRGMGMSNPLIRRSKTPPYKSLFKRASTIYT 240
M+++GF P+ID + YTV Y S+ LM DLR MGMSNPL R++ P ++ F RA+ IY
Sbjct: 181 MQRAGFALPVIDAENYTVRYDSLFPLMRDLRAMGMSNPLAARARMPLTRAFFLRAAEIYA 240
Query: 241 EENSDLTGNVTASFSIIYVMGWKS 264
E SD G + A+FSIIYV GW +
Sbjct: 241 ERYSDPDGRIRATFSIIYVSGWAA 264
|
Species: Rhizobium leguminosarum Genus: Rhizobium Family: Rhizobiaceae Order: Rhizobiales Class: Alphaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
Conserved Domains in CDD Database
Detected by RPS-BLAST and HHsearch
Conserved Domains in CDD Database Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
Original result of RPS-BLASTagainst CDD database part II
| Identity | Alignment graph | Length | Definition | E-value |
| Target | 273 | SAM-dependent methyltransferase protein [Candidatus Lib | ||
| TIGR02072 | 240 | TIGR02072, BioC, biotin biosynthesis protein BioC | 7e-16 | |
| pfam08241 | 95 | pfam08241, Methyltransf_11, Methyltransferase domain | 0.002 | |
| KOG2940 | 325 | KOG2940, KOG2940, KOG2940, Predicted methyltransferase | 5e-38 |
| >gnl|CDD|162684 TIGR02072, BioC, biotin biosynthesis protein BioC | Back alignment and domain information |
|---|
Score = 80.0 bits (198), Expect = 7e-16
Identities = 39/170 (22%), Positives = 76/170 (44%), Gaps = 18/170 (10%)
Query: 94 LEEIPSISQSVDLILSPLNLHIINDTLEMFSKINHMLKPGGMFLAAIPGIGTLHELRKAL 153
E++P S DLI+S L L +D + S++ +LKPGG+ + G GTLHELR
Sbjct: 89 AEKLPLEDSSFDLIVSNLALQWCDDLSQALSELARVLKPGGLLAFSTFGPGTLHELR--- 145
Query: 154 LKAETELTGGASPRVIPFMDIKSAGTLMEKSGFISPIIDQDTYTVYYKSMLHLMHDLRGM 213
+ G + ++ + L++ S F ++++ T+ + L ++ L+
Sbjct: 146 -----QSFG---QHGLRYLSLDELKALLKNS-FELLTLEEELITLSFDDPLDVLRHLKKT 196
Query: 214 GMSNPLIRRSKTPPYKSLFKRASTIYTEENSDLTGNVTASFSIIYVMGWK 263
G + R+ K+ +R Y +E + ++ ++Y + K
Sbjct: 197 GANGLSSGRTSRKQLKAFLER----YEQEFQ--PDGLPLTYHVVYGIAKK 240
|
This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology. Length = 240 |
| >gnl|CDD|149353 pfam08241, Methyltransf_11, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 38.0 bits (89), Expect = 0.002
Identities = 15/50 (30%), Positives = 26/50 (52%)
Query: 88 EVISCPLEEIPSISQSVDLILSPLNLHIINDTLEMFSKINHMLKPGGMFL 137
+ E++P +S D+++S L LH + D +I +LKPGG +
Sbjct: 45 TFVVGDAEDLPFPDESFDVVVSSLVLHHLPDPERALREIARVLKPGGKLV 94
|
Members of this family are SAM dependent methyltransferases. Length = 95 |
| >gnl|CDD|38151 KOG2940, KOG2940, KOG2940, Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Score = 153 bits (388), Expect = 5e-38
Identities = 82/270 (30%), Positives = 130/270 (48%), Gaps = 13/270 (4%)
Query: 4 LFDMQLINRNRLRSFRQKDFSVYFLLDRVAKEIAFRLNMINQTFENALELHGITGIVG-- 61
+FD L R R+ D +L + + +A R+ ++F A ++ G V
Sbjct: 30 IFDRDLKRIQRDRAAWLSDQKNDYLKEEIGDRLADRVFDCKKSFPTAFDIGCSLGAVKRH 89
Query: 62 --------YTCMETKKIHRMIRAEISTEFSTLKREVISCPLEEIPSISQSVDLILSPLNL 113
M+T + MI++ + +++ E + SVDLI+S L+L
Sbjct: 90 LRGEGVEKLIMMDTS--YDMIKSCRDAQDPSIETSYFVGDEEFLDFKENSVDLIISSLSL 147
Query: 114 HIINDTLEMFSKINHMLKPGGMFLAAIPGIGTLHELRKALLKAETELTGGASPRVIPFMD 173
H ND + LKP G+F+A++ G TL+ELR +L AE E GG SP + PF
Sbjct: 148 HWTNDLPGSMIQCKLALKPDGLFIASMLGGDTLYELRCSLQLAELEREGGISPHISPFTQ 207
Query: 174 IKSAGTLMEKSGFISPIIDQDTYTVYYKSMLHLMHDLRGMGMSNPLIRRSKTPPYKSLFK 233
++ G L+ ++GF +D D V Y M LM DL+GMG SN + R+ +++
Sbjct: 208 VRDIGNLLTRAGFSMLTVDTDEIVVGYPRMFELMEDLQGMGESNAALNRNAILNRETMVA 267
Query: 234 RASTIYTEENSDLTGNVTASFSIIYVMGWK 263
A+ IY + G + A+F IIY++GWK
Sbjct: 268 -AAAIYQSMYATEDGTIPATFQIIYMIGWK 296
|
Length = 325 |
Conserved Domains in CDD Database Detected by HHsearch
Original result of HHsearch against CDD database
| Identity | Alignment graph | Length | Definition | Probability |
| Target | 273 | SAM-dependent methyltransferase protein [Candidatus Lib | ||
| KOG2940 | 325 | consensus | 100.0 | |
| TIGR02072 | 272 | BioC biotin biosynthesis protein BioC; InterPro: IPR011 | 100.0 | |
| PRK10258 | 251 | biotin biosynthesis protein BioC; Provisional | 100.0 | |
| pfam02384 | 312 | N6_Mtase N-6 DNA Methylase. Restriction-modification (R | 97.82 | |
| PRK01683 | 252 | trans-aconitate 2-methyltransferase; Provisional | 100.0 | |
| PRK08317 | 241 | hypothetical protein; Provisional | 99.97 | |
| COG4106 | 257 | Tam Trans-aconitate methyltransferase [General function | 99.97 | |
| PTZ00098 | 263 | phosphoethanolamine N-methyltransferase; Provisional | 99.94 | |
| PRK13341 | 726 | recombination factor protein RarA/unknown domain fusion | 95.86 | |
| PRK00216 | 239 | ubiE ubiquinone/menaquinone biosynthesis methyltransfer | 99.97 | |
| pfam01209 | 233 | Ubie_methyltran ubiE/COQ5 methyltransferase family. | 99.97 | |
| TIGR01934 | 242 | MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis meth | 99.94 | |
| PRK05134 | 233 | 3-demethylubiquinone-9 3-methyltransferase; Provisional | 99.92 | |
| KOG1540 | 296 | consensus | 99.87 | |
| TIGR01983 | 275 | UbiG ubiquinone biosynthesis O-methyltransferase; Inter | 99.87 | |
| PRK11036 | 256 | putative metallothionein SmtA; Provisional | 99.86 | |
| PRK11088 | 272 | rrmA 23S rRNA methyltransferase A; Provisional | 99.83 | |
| PRK07580 | 230 | Mg-protoporphyrin IX methyl transferase; Validated | 99.75 | |
| pfam02353 | 273 | CMAS Cyclopropane-fatty-acyl-phospholipid synthase. Thi | 99.7 | |
| TIGR02752 | 231 | MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methylt | 99.68 | |
| TIGR02021 | 224 | BchM-ChlM magnesium protoporphyrin O-methyltransferase; | 99.6 | |
| COG2230 | 283 | Cfa Cyclopropane fatty acid synthase and related methyl | 99.58 | |
| PRK11705 | 383 | cyclopropane fatty acyl phospholipid synthase; Provisio | 99.42 | |
| PRK09328 | 277 | N5-glutamine S-adenosyl-L-methionine-dependent methyltr | 99.22 | |
| pfam07942 | 268 | N2227 N2227-like protein. This family features sequence | 98.86 | |
| pfam01234 | 261 | NNMT_PNMT_TEMT NNMT/PNMT/TEMT family. | 98.74 | |
| KOG3178 | 342 | consensus | 98.46 | |
| pfam11968 | 220 | DUF3321 Protein of unknown function (DUF3321). This fam | 98.05 | |
| KOG2798 | 369 | consensus | 97.88 | |
| PRK13255 | 218 | thiopurine S-methyltransferase; Reviewed | 97.59 | |
| COG1189 | 245 | Predicted rRNA methylase [Translation, ribosomal struct | 97.32 | |
| TIGR02817 | 338 | adh_fam_1 zinc-binding alcohol dehydrogenase family pro | 96.45 | |
| PRK13256 | 226 | thiopurine S-methyltransferase; Reviewed | 95.74 | |
| COG2226 | 238 | UbiE Methylase involved in ubiquinone/menaquinone biosy | 99.96 | |
| PRK05785 | 225 | hypothetical protein; Provisional | 99.89 | |
| KOG3010 | 261 | consensus | 99.68 | |
| KOG1541 | 270 | consensus | 99.6 | |
| pfam05175 | 170 | MTS Methyltransferase small domain. This domain is foun | 99.51 | |
| TIGR03534 | 251 | RF_mod_HemK protein-(glutamine-N5) methyltransferase, r | 99.23 | |
| PRK11805 | 307 | N5-glutamine S-adenosyl-L-methionine-dependent methyltr | 99.19 | |
| TIGR03533 | 284 | L3_gln_methyl protein-(glutamine-N5) methyltransferase, | 99.18 | |
| PRK09489 | 342 | rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provi | 99.14 | |
| COG2813 | 300 | RsmC 16S RNA G1207 methylase RsmC [Translation, ribosom | 99.03 | |
| PRK00312 | 213 | pcm protein-L-isoaspartate O-methyltransferase; Reviewe | 98.94 | |
| COG2890 | 280 | HemK Methylase of polypeptide chain release factors [Tr | 98.89 | |
| pfam01170 | 171 | UPF0020 Putative RNA methylase family UPF0020. This dom | 98.81 | |
| PRK09329 | 285 | N5-glutamine S-adenosyl-L-methionine-dependent methyltr | 98.8 | |
| PRK00377 | 198 | cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provi | 98.8 | |
| pfam01596 | 204 | Methyltransf_3 O-methyltransferase. Members of this fam | 98.69 | |
| pfam01739 | 194 | CheR CheR methyltransferase, SAM binding domain. CheR p | 98.54 | |
| PRK10901 | 428 | 16S rRNA methyltransferase B; Provisional | 98.41 | |
| PRK00107 | 216 | gidB glucose-inhibited division protein B; Reviewed | 98.28 | |
| pfam02527 | 184 | GidB rRNA small subunit methyltransferase G. This is a | 98.22 | |
| pfam09243 | 275 | Rsm22 Mitochondrial small ribosomal subunit Rsm22. Rsm2 | 98.19 | |
| PRK11933 | 471 | yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Revi | 97.99 | |
| COG0357 | 215 | GidB Predicted S-adenosylmethionine-dependent methyltra | 97.88 | |
| pfam10672 | 286 | Methyltrans_SAM S-adenosylmethionine-dependent methyltr | 97.74 | |
| pfam01189 | 277 | Nol1_Nop2_Fmu NOL1/NOP2/sun family. | 97.68 | |
| TIGR03438 | 301 | probable methyltransferase. This model represents a dis | 97.63 | |
| TIGR00138 | 197 | gidB methyltransferase GidB; InterPro: IPR003682 GidB ( | 97.59 | |
| COG0144 | 355 | Sun tRNA and rRNA cytosine-C5-methylases [Translation, | 96.98 | |
| COG0116 | 381 | Predicted N6-adenine-specific DNA methylase [DNA replic | 96.5 | |
| TIGR00563 | 487 | rsmB ribosomal RNA small subunit methyltransferase B; I | 96.45 | |
| pfam05185 | 447 | PRMT5 PRMT5 arginine-N-methyltransferase. The human hom | 95.83 | |
| TIGR00692 | 341 | tdh L-threonine 3-dehydrogenase; InterPro: IPR004627 L- | 95.31 | |
| COG0286 | 489 | HsdM Type I restriction-modification system methyltrans | 95.18 | |
| KOG0822 | 649 | consensus | 95.01 | |
| COG1889 | 231 | NOP1 Fibrillarin-like rRNA methylase [Translation, ribo | 94.46 | |
| PRK11873 | 258 | arsM arsenite S-adenosylmethyltransferase; Reviewed | 99.95 | |
| smart00828 | 224 | PKS_MT Methyltransferase in polyketide synthase (PKS) e | 99.92 | |
| COG2227 | 243 | UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzo | 99.78 | |
| pfam07021 | 193 | MetW Methionine biosynthesis protein MetW. This family | 99.75 | |
| KOG1270 | 282 | consensus | 99.71 | |
| KOG4300 | 252 | consensus | 99.68 | |
| COG4976 | 287 | Predicted methyltransferase (contains TPR repeat) [Gene | 99.61 | |
| pfam08003 | 315 | Methyltransf_9 Protein of unknown function (DUF1698). T | 99.56 | |
| TIGR02081 | 205 | metW methionine biosynthesis protein MetW; InterPro: IP | 99.49 | |
| KOG2361 | 264 | consensus | 99.32 | |
| pfam05148 | 214 | Methyltransf_8 Hypothetical methyltransferase. This fam | 99.31 | |
| pfam05219 | 265 | DREV DREV methyltransferase. This family contains DREV | 99.29 | |
| KOG2899 | 288 | consensus | 99.16 | |
| KOG3045 | 325 | consensus | 99.14 | |
| TIGR00452 | 316 | TIGR00452 methyltransferase, putative; InterPro: IPR010 | 99.08 | |
| pfam05891 | 217 | Hydroxy-O-Methy Putative hydroxyindole-O-methyltransfer | 98.94 | |
| pfam06080 | 201 | DUF938 Protein of unknown function (DUF938). This famil | 98.82 | |
| ), spermine synthase ( | 284 | speE spermidine synthase; InterPro: IPR001045 Synonym(s | 98.57 | |
| pfam12147 | 311 | Hydrolase_5 Putative lysophospholipase. This domain is | 98.4 | |
| COG2521 | 287 | Predicted archaeal methyltransferase [General function | 98.35 | |
| pfam05724 | 203 | TPMT Thiopurine S-methyltransferase (TPMT). This family | 98.29 | |
| TIGR00537 | 183 | hemK_rel_arch methylase, putative; InterPro: IPR004557 | 98.29 | |
| COG4627 | 185 | Uncharacterized protein conserved in bacteria [Function | 97.98 | |
| TIGR02716 | 306 | C20_methyl_CrtF C-20 methyltransferase BchU; InterPro: | 97.96 | |
| pfam03492 | 331 | Methyltransf_7 SAM dependent carboxyl methyltransferase | 97.93 | |
| COG4798 | 238 | Predicted methyltransferase [General function predictio | 97.5 | |
| pfam04672 | 268 | DUF574 Protein of unknown function (DUF574). Family of | 97.49 | |
| COG2520 | 341 | Predicted methyltransferase [General function predictio | 96.61 | |
| pfam08241 | 95 | Methyltransf_11 Methyltransferase domain. Members of th | 99.79 | |
| pfam08242 | 98 | Methyltransf_12 Methyltransferase domain. Members of th | 99.77 | |
| cd02440 | 107 | AdoMet_MTases S-adenosylmethionine-dependent methyltran | 99.72 | |
| PRK11207 | 198 | tellurite resistance protein TehB; Provisional | 99.51 | |
| PRK06202 | 233 | hypothetical protein; Provisional | 99.4 | |
| pfam03848 | 192 | TehB Tellurite resistance protein TehB. | 99.28 | |
| COG2264 | 300 | PrmA Ribosomal protein L11 methylase [Translation, ribo | 99.26 | |
| PRK00517 | 298 | prmA ribosomal protein L11 methyltransferase; Reviewed | 99.26 | |
| pfam06325 | 294 | PrmA Ribosomal protein L11 methyltransferase (PrmA). Th | 99.25 | |
| pfam05401 | 201 | NodS Nodulation protein S (NodS). This family consists | 99.2 | |
| pfam03291 | 327 | Pox_MCEL mRNA capping enzyme. This family of enzymes ar | 99.18 | |
| PRK11188 | 209 | rrmJ 23S rRNA methyltransferase J; Provisional | 99.15 | |
| pfam01135 | 205 | PCMT Protein-L-isoaspartate(D-aspartate) O-methyltransf | 99.12 | |
| PRK06922 | 679 | hypothetical protein; Provisional | 99.12 | |
| COG4123 | 248 | Predicted O-methyltransferase [General function predict | 99.09 | |
| KOG1975 | 389 | consensus | 99.08 | |
| PRK13942 | 214 | protein-L-isoaspartate O-methyltransferase; Provisional | 99.07 | |
| TIGR00740 | 247 | TIGR00740 methyltransferase, putative; InterPro: IPR005 | 99.07 | |
| TIGR00406 | 330 | prmA ribosomal protein L11 methyltransferase; InterPro: | 99.06 | |
| PRK13944 | 205 | protein-L-isoaspartate O-methyltransferase; Provisional | 99.03 | |
| PRK01544 | 503 | bifunctional N5-glutamine S-adenosyl-L-methionine-depen | 99.02 | |
| pfam01728 | 176 | FtsJ FtsJ-like methyltransferase. This family consists | 99.02 | |
| pfam03141 | 506 | DUF248 Putative methyltransferase. Members of this fami | 99.02 | |
| PRK12335 | 289 | tellurite resistance protein TehB; Provisional | 98.93 | |
| KOG1269 | 364 | consensus | 98.9 | |
| PRK07402 | 196 | precorrin-6B methylase; Provisional | 98.87 | |
| PRK13943 | 317 | protein-L-isoaspartate O-methyltransferase; Provisional | 98.87 | |
| TIGR00477 | 239 | tehB tellurite resistance protein TehB; InterPro: IPR00 | 98.86 | |
| COG2242 | 187 | CobL Precorrin-6B methylase 2 [Coenzyme metabolism] | 98.83 | |
| COG2518 | 209 | Pcm Protein-L-isoaspartate carboxylmethyltransferase [P | 98.79 | |
| PRK04457 | 262 | spermidine synthase; Provisional | 98.76 | |
| pfam10294 | 171 | Methyltransf_16 Putative methyltransferase. | 98.73 | |
| KOG1271 | 227 | consensus | 98.73 | |
| KOG1331 | 293 | consensus | 98.73 | |
| COG0220 | 227 | Predicted S-adenosylmethionine-dependent methyltransfer | 98.71 | |
| pfam02390 | 199 | Methyltransf_4 Putative methyltransferase. This is a fa | 98.7 | |
| PRK00121 | 229 | trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed | 98.68 | |
| PRK08287 | 186 | cobalt-precorrin-6Y C(15)-methyltransferase; Validated | 98.66 | |
| pfam00891 | 239 | Methyltransf_2 O-methyltransferase. This family include | 98.66 | |
| COG2519 | 256 | GCD14 tRNA(1-methyladenosine) methyltransferase and rel | 98.61 | |
| TIGR00438 | 192 | rrmJ ribosomal RNA large subunit methyltransferase J; I | 98.56 | |
| COG0500 | 257 | SmtA SAM-dependent methyltransferases [Secondary metabo | 98.56 | |
| PRK03612 | 516 | spermidine synthase; Provisional | 98.56 | |
| TIGR00091 | 216 | TIGR00091 tRNA (guanine-N(7)-)-methyltransferase; Inter | 98.53 | |
| COG4122 | 219 | Predicted O-methyltransferase [General function predict | 98.52 | |
| KOG2904 | 328 | consensus | 98.52 | |
| COG0421 | 282 | SpeE Spermidine synthase [Amino acid transport and meta | 98.51 | |
| COG0293 | 205 | FtsJ 23S rRNA methylase [Translation, ribosomal structu | 98.51 | |
| PRK00811 | 283 | spermidine synthase; Provisional | 98.5 | |
| smart00138 | 264 | MeTrc Methyltransferase, chemotaxis proteins. Methylate | 98.47 | |
| TIGR02469 | 135 | CbiT precorrin-6Y C5,15-methyltransferase (decarboxylat | 98.42 | |
| KOG1499 | 346 | consensus | 98.41 | |
| ) (PCMT) (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyzes the transfer of a methyl group from S- adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerization of normal L-aspartyl and L- asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process." target="_blank" href="http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=TIGR00080">TIGR00080 | 228 | pimt protein-L-isoaspartate O-methyltransferase; InterP | 98.4 | |
| pfam01564 | 240 | Spermine_synth Spermine/spermidine synthase. Spermine a | 98.4 | |
| COG1352 | 268 | CheR Methylase of chemotaxis methyl-accepting proteins | 98.38 | |
| pfam02475 | 199 | Met_10 Met-10+ like-protein. The methionine-10 mutant a | 98.36 | |
| TIGR03587 | 204 | Pse_Me-ase pseudaminic acid biosynthesis-associated met | 98.36 | |
| PRK00536 | 262 | speE spermidine synthase; Provisional | 98.35 | |
| COG1041 | 347 | Predicted DNA modification methylase [DNA replication, | 98.32 | |
| KOG3987 | 288 | consensus | 98.25 | |
| pfam08704 | 309 | GCD14 tRNA methyltransferase complex GCD14 subunit. GCD | 98.19 | |
| PRK10611 | 287 | chemotaxis methyltransferase CheR; Provisional | 98.17 | |
| KOG1661 | 237 | consensus | 98.16 | |
| PRK01581 | 363 | speE spermidine synthase; Validated | 98.08 | |
| KOG4589 | 232 | consensus | 98.04 | |
| KOG1500 | 517 | consensus | 98.01 | |
| COG1092 | 393 | Predicted SAM-dependent methyltransferases [General fun | 97.91 | |
| COG3963 | 194 | Phospholipid N-methyltransferase [Lipid metabolism] | 97.89 | |
| KOG2352 | 482 | consensus | 97.84 | |
| PRK01544 | 503 | bifunctional N5-glutamine S-adenosyl-L-methionine-depen | 97.83 | |
| KOG0820 | 315 | consensus | 97.73 | |
| COG0030 | 259 | KsgA Dimethyladenosine transferase (rRNA methylation) [ | 97.67 | |
| TIGR00755 | 277 | ksgA dimethyladenosine transferase; InterPro: IPR011530 | 97.65 | |
| pfam00398 | 258 | RrnaAD Ribosomal RNA adenine dimethylase. | 97.56 | |
| pfam01269 | 229 | Fibrillarin Fibrillarin. | 97.51 | |
| PTZ00338 | 296 | dimethyladenosine transferase; Provisional | 97.49 | |
| TIGR03439 | 319 | methyl_EasF probable methyltransferase domain, EasF fam | 97.47 | |
| PRK11783 | 716 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | 97.29 | |
| KOG1709 | 271 | consensus | 97.24 | |
| COG1063 | 350 | Tdh Threonine dehydrogenase and related Zn-dependent de | 97.23 | |
| pfam03602 | 181 | Cons_hypoth95 Conserved hypothetical protein 95. | 97.17 | |
| PRK04266 | 226 | fibrillarin; Provisional | 97.15 | |
| COG4262 | 508 | Predicted spermidine synthase with an N-terminal membra | 97.11 | |
| PTZ00146 | 296 | fibrillarin; Provisional | 97.11 | |
| PRK10909 | 198 | rsmD 16S rRNA m(2)G966-methyltransferase; Provisional | 97.03 | |
| pfam08123 | 205 | DOT1 Histone methylation protein DOT1. The DOT1 domain | 96.98 | |
| PRK09880 | 343 | L-idonate 5-dehydrogenase; Provisional | 96.98 | |
| COG5459 | 484 | Predicted rRNA methylase [Translation, ribosomal struct | 96.89 | |
| KOG1663 | 237 | consensus | 96.78 | |
| TIGR03451 | 358 | mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrog | 96.71 | |
| KOG3201 | 201 | consensus | 96.64 | |
| pfam05971 | 254 | Methyltransf_10 Protein of unknown function (DUF890). T | 96.58 | |
| TIGR00479 | 434 | rumA 23S rRNA (uracil-5-)-methyltransferase RumA; Inter | 96.41 | |
| pfam03059 | 277 | NAS Nicotianamine synthase protein. Nicotianamine synth | 96.35 | |
| KOG0024 | 354 | consensus | 96.31 | |
| pfam03269 | 177 | DUF268 Caenorhabditis protein of unknown function, DUF2 | 96.21 | |
| COG1064 | 339 | AdhP Zn-dependent alcohol dehydrogenases [General funct | 96.2 | |
| PRK10309 | 347 | galactitol-1-phosphate dehydrogenase; Provisional | 96.04 | |
| COG4076 | 252 | Predicted RNA methylase [General function prediction on | 96.02 | |
| KOG1098 | 780 | consensus | 96.02 | |
| KOG2793 | 248 | consensus | 95.99 | |
| KOG1099 | 294 | consensus | 95.92 | |
| PRK10083 | 339 | putative dehydrogenase; Provisional | 95.91 | |
| PRK05396 | 341 | tdh L-threonine 3-dehydrogenase; Validated | 95.9 | |
| PRK11760 | 356 | putative RNA 2'-O-ribose methyltransferase; Provisional | 95.89 | |
| PHA02056 | 279 | putative methyltransferase | 95.79 | |
| TIGR03366 | 280 | HpnZ_proposed putative phosphonate catabolism associate | 95.74 | |
| KOG2920 | 282 | consensus | 95.69 | |
| PRK13771 | 332 | putative alcohol dehydrogenase; Provisional | 95.56 | |
| COG3897 | 218 | Predicted methyltransferase [General function predictio | 95.28 | |
| COG0742 | 187 | N6-adenine-specific methylase [DNA replication, recombi | 95.18 | |
| pfam07091 | 248 | FmrO Ribosomal RNA methyltransferase (FmrO). This famil | 95.14 | |
| pfam03141 | 506 | DUF248 Putative methyltransferase. Members of this fami | 94.9 | |
| PRK07502 | 307 | cyclohexadienyl dehydrogenase; Validated | 94.86 | |
| KOG1122 | 460 | consensus | 94.82 | |
| PRK09422 | 338 | alcohol dehydrogenase; Provisional | 94.61 | |
| TIGR00478 | 240 | tly hemolysin A; InterPro: IPR004538 Hemolysins are exo | 93.64 | |
| KOG1562 | 337 | consensus | 92.95 | |
| PRK11727 | 326 | putative SAM-dependent methyltransferase; Provisional | 92.95 | |
| COG4301 | 321 | Uncharacterized conserved protein [Function unknown] | 92.9 | |
| KOG2915 | 314 | consensus | 92.53 | |
| TIGR00446 | 284 | nop2p NOL1/NOP2/sun family putative RNA methylase; Inte | 91.63 | |
| PRK08507 | 275 | prephenate dehydrogenase; Validated | 91.56 | |
| PRK00050 | 309 | mraW S-adenosyl-methyltransferase MraW; Provisional | 91.09 | |
| COG2263 | 198 | Predicted RNA methylase [Translation, ribosomal structu | 98.15 | |
| pfam09445 | 165 | Methyltransf_15 RNA cap guanine-N2 methyltransferase. R | 97.81 | |
| smart00650 | 169 | rADc Ribosomal RNA adenine dimethylases. | 97.7 | |
| PRK03522 | 375 | rumB 23S rRNA methyluridine methyltransferase; Reviewed | 97.42 | |
| PRK05031 | 363 | tRNA (uracil-5-)-methyltransferase; Validated | 97.34 | |
| KOG3420 | 185 | consensus | 97.31 | |
| pfam05958 | 353 | tRNA_U5-meth_tr tRNA (Uracil-5-)-methyltransferase. Thi | 97.08 | |
| PRK13168 | 440 | rumA 23S rRNA 5-methyluridine methyltransferase; Review | 96.93 | |
| COG2265 | 432 | TrmA SAM-dependent methyltransferases related to tRNA ( | 96.52 | |
| KOG3115 | 249 | consensus | 96.19 | |
| KOG2730 | 263 | consensus | 95.73 | |
| pfam04816 | 204 | DUF633 Family of unknown function (DUF633). This family | 95.47 | |
| COG1565 | 370 | Uncharacterized conserved protein [Function unknown] | 94.73 | |
| TIGR02143 | 361 | trmA_only tRNA (uracil-5-)-methyltransferase; InterPro: | 94.65 | |
| pfam02636 | 240 | DUF185 Uncharacterized ACR, COG1565. This family contai | 94.36 | |
| COG2384 | 226 | Predicted SAM-dependent methyltransferase [General func | 94.32 | |
| pfam07757 | 112 | AdoMet_MTase Predicted AdoMet-dependent methyltransfera | 92.8 | |
| KOG2187 | 534 | consensus | 92.51 | |
| KOG1501 | 636 | consensus | 91.42 | |
| TIGR00536 | 311 | hemK_fam methyltransferase, HemK family; InterPro: IPR0 | 90.94 | |
| KOG3191 | 209 | consensus | 98.03 | |
| PRK00274 | 267 | ksgA dimethyladenosine transferase; Reviewed | 97.46 | |
| pfam06859 | 110 | Bin3 Bicoid-interacting protein 3 (Bin3). This family r | 93.94 | |
| PRK11524 | 284 | putative methyltransferase; Provisional | 90.23 |
| >KOG2940 consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=0 Score=360.04 Aligned_cols=270 Identities=30% Similarity=0.449 Sum_probs=258.2 Q ss_pred CCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHCCCCEEEEECCHHH Q ss_conf 72001899998577663174622068999999999978986368987099985998589999986269708997200113 Q gi|254780322|r 2 NILFDMQLINRNRLRSFRQKDFSVYFLLDRVAKEIAFRLNMINQTFENALELHGITGIVGYTCMETKKIHRMIRAEISTE 81 (273) Q Consensus 2 ~~~fd~~~i~~~~~ra~~~~~~~~~~l~~~~a~~l~~~l~~~~~~~~~vLdlGcGtG~~~~~l~~~~~~~~v~~~D~s~~ 81 (273) T Consensus 28 ~~iFDR~~KR~qrdrAa~~~d~k~dylkeeig~rlaDrvfD~kk~fp~a~diGcs~G~v~rhl~~e~-vekli~~DtS~~ 106 (325) T KOG2940 28 VKIFDRDLKRIQRDRAAWLSDQKNDYLKEEIGDRLADRVFDCKKSFPTAFDIGCSLGAVKRHLRGEG-VEKLIMMDTSYD 106 (325) T ss_pred HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCHHHHHHHHHHCC-HHHEEEEECCHH T ss_conf 6766357777777687635100016899998888889998776607520440655446568877525-134066404167 Q ss_pred HHHHHHH---------CCCCCHHHHCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHH Q ss_conf 5775311---------0012001101433352226666674222346999999999818787089840686763347788 Q gi|254780322|r 82 FSTLKRE---------VISCPLEEIPSISQSVDLILSPLNLHIINDTLEMFSKINHMLKPGGMFLAAIPGIGTLHELRKA 152 (273) Q Consensus 82 ~~~~~~~---------~~~~d~e~l~~~~~sfDli~s~~~l~w~~d~~~~l~~~~r~LkpgG~~~~s~~~~~~~~el~~~ 152 (273) T Consensus 107 M~~s~~~~qdp~i~~~~~v~DEE~Ldf~ens~DLiisSlslHW~NdLPg~m~~ck~~lKPDg~FiasmlggdTLyELR~s 186 (325) T KOG2940 107 MIKSCRDAQDPSIETSYFVGDEEFLDFKENSVDLIISSLSLHWTNDLPGSMIQCKLALKPDGLFIASMLGGDTLYELRCS 186 (325) T ss_pred HHHHHHCCCCCCEEEEEEECCHHCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCHHHHHCCCCHHHHHHH T ss_conf 99975326898537999725510156553501112654334564048368999887428975121677564409999987 Q ss_pred HHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEEEEEEEEECCCHHHHHHHHHHHCCHHHHCCCCCCCCCHHHH Q ss_conf 99875454268664216745999999999850898546773136883589899999999615511110556679998899 Q gi|254780322|r 153 LLKAETELTGGASPRVIPFMDIKSAGTLMEKSGFISPIIDQDTYTVYYKSMLHLMHDLRGMGMSNPLIRRSKTPPYKSLF 232 (273) Q Consensus 153 ~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~agf~~~~~~~~~~~~~~~~~~~l~~~lk~~g~~~~~~~~~~~~~~k~~~ 232 (273) T Consensus 187 lqLAelER~GGiSphiSPf~qvrDiG~LL~rAGF~m~tvDtDEi~v~Yp~mfeLm~dLq~MgEsn~~~~Rn~~-l~Ret~ 265 (325) T KOG2940 187 LQLAELEREGGISPHISPFTQVRDIGNLLTRAGFSMLTVDTDEIVVGYPRMFELMEDLQGMGESNAALNRNAI-LNRETM 265 (325) T ss_pred HHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEECCCCEEECCCHHHHHHHHHHHHCCCCHHHCCCCC-CCHHHH T ss_conf 6389887516988776704665566657764476640003201144684199999999863201112216742-028999 Q ss_pred HHHHHHHHHHCCCCCCCEEEEEEEEEEEEECCCCCCCCCCC Q ss_conf 99999999962585783788999999999718862768898 Q gi|254780322|r 233 KRASTIYTEENSDLTGNVTASFSIIYVMGWKSTTFKTGTDE 273 (273) Q Consensus 233 ~~~~~~y~~~~~~~dg~I~~tf~ii~~~gwK~~~~~~~~~~ 273 (273) T Consensus 266 vAaaAiY~smya~e~~~iPATfqiiy~iGWk~~~s~pq~~~ 306 (325) T KOG2940 266 VAAAAIYQSMYATEDGTIPATFQIIYMIGWKPHPSQPQAAE 306 (325) T ss_pred HHHHHHHHHHHCCCCCCCCEEEEEEEEECCCCCCCCCCHHH T ss_conf 99999999985178997660699999971576989878555 |
|
| >TIGR02072 BioC biotin biosynthesis protein BioC; InterPro: IPR011814 This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulphur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable) | Back alignment and domain information |
|---|
Probab=100.00 E-value=0 Score=354.14 Aligned_cols=248 Identities=21% Similarity=0.287 Sum_probs=229.7 Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCC---CCCCCEEEECCCCCHHHHHHHHHCCCCEEEEECCHHHHHHHH--- Q ss_conf 57766317462206899999999997898636---898709998599858999998626970899720011357753--- Q gi|254780322|r 13 NRLRSFRQKDFSVYFLLDRVAKEIAFRLNMIN---QTFENALELHGITGIVGYTCMETKKIHRMIRAEISTEFSTLK--- 86 (273) Q Consensus 13 ~~~ra~~~~~~~~~~l~~~~a~~l~~~l~~~~---~~~~~vLdlGcGtG~~~~~l~~~~~~~~v~~~D~s~~~~~~~--- 86 (273) T Consensus 1 ~F~~A~~~Yd~~A~-~Qr~~~~~Ll~~L~~~~~~~~~~~~vLd~GcGTG~~t~~l~~~~~~~~~~a~D~~~~ml~~a~~~ 79 (272) T TIGR02072 1 RFSKAAKTYDRHAK-IQREMAKRLLALLKEKRPSHFEPASVLDIGCGTGYLTRALLKRFPQAELIALDISEEMLAQAKEK 79 (272) T ss_pred CCCHHHHHHHHHHH-HHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCHHHHHHHHHHCCCCEEHHHHCCHHHHHHHHHH T ss_conf 92011520566679-99999999999887407654455435651268548999999868800123333256789999974 Q ss_pred ------------HHCCCCCHHHHCCCCCC--CCHHHHHHHHHCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHH Q ss_conf ------------11001200110143335--2226666674222346999999999818787089840686763347788 Q gi|254780322|r 87 ------------REVISCPLEEIPSISQS--VDLILSPLNLHIINDTLEMFSKINHMLKPGGMFLAAIPGIGTLHELRKA 152 (273) Q Consensus 87 ------------~~~~~~d~e~l~~~~~s--fDli~s~~~l~w~~d~~~~l~~~~r~LkpgG~~~~s~~~~~~~~el~~~ 152 (273) T Consensus 80 ~~~GWW~~~~~~~~f~~gD~E~l~~~~~~~~~DLI~Sn~a~QW~~~~~~~l~~l~~~lk~gG~l~FStf~~~~l~El~~~ 159 (272) T TIGR02072 80 LSEGWWQKNLKAVQFICGDIEKLPLEDSSFKFDLIVSNLALQWCDDLSQALSELARVLKPGGLLAFSTFGPGTLKELRQS 159 (272) T ss_pred CCCCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEHHHHHHHHHHCCCHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHH T ss_conf 46788657604566666377717887663034127563588710478899999997528796899861354134999999 Q ss_pred HHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEEEEEEEEECCCHHHHHHHHHHHCCHHHHCCC----CCCCCC Q ss_conf 9987545426866421674599999999985089854677313688358989999999961551111055----667999 Q gi|254780322|r 153 LLKAETELTGGASPRVIPFMDIKSAGTLMEKSGFISPIIDQDTYTVYYKSMLHLMHDLRGMGMSNPLIRR----SKTPPY 228 (273) Q Consensus 153 ~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~agf~~~~~~~~~~~~~~~~~~~l~~~lk~~g~~~~~~~~----~~~~~~ 228 (273) T Consensus 160 ~~~~~-~~-ID~~~~~~~y~~~~~~~~~l~~~~f~~~~~~~~~~~l~F~~~~~~l~~lK~~Ga~~~~~~~~~~~~~~l~~ 237 (272) T TIGR02072 160 FGQVS-EL-IDERSHGLRYLSLDELKALLKNDGFELLKLEEELITLSFDDPLDVLRHLKKTGANGLSQGSVTSENRGLWT 237 (272) T ss_pred HHHHH-HH-HCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEEEEEEECCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC T ss_conf 99999-74-07654678998989999998615984157888656523578899999988743242467730214566678 Q ss_pred HHHHHHHHHHHHHHCCCCCCCEEEEEEEEEEEEEC Q ss_conf 88999999999996258578378899999999971 Q gi|254780322|r 229 KSLFKRASTIYTEENSDLTGNVTASFSIIYVMGWK 263 (273) Q Consensus 229 k~~~~~~~~~y~~~~~~~dg~I~~tf~ii~~~gwK 263 (273) T Consensus 238 ~~~~~~~~~~y~~~~~~~~g~~~LTY~~~y~~~~k 272 (272) T TIGR02072 238 RKQLKAFLERYEQEFQPGQGGVPLTYHVVYGLAKK 272 (272) T ss_pred HHHHHHHHHHHHHHCCCCCCEEEEEEEEEEEEEEC T ss_conf 47789999998862389986157655788887748 |
The enzyme appears related to methyltransferases by homology.; GO: 0009102 biotin biosynthetic process. |
| >PRK10258 biotin biosynthesis protein BioC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=0 Score=352.61 Aligned_cols=243 Identities=16% Similarity=0.223 Sum_probs=219.1 Q ss_pred CCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHCCCCEEEEECCHHHHH Q ss_conf 00189999857766317462206899999999997898636898709998599858999998626970899720011357 Q gi|254780322|r 4 LFDMQLINRNRLRSFRQKDFSVYFLLDRVAKEIAFRLNMINQTFENALELHGITGIVGYTCMETKKIHRMIRAEISTEFS 83 (273) Q Consensus 4 ~fd~~~i~~~~~ra~~~~~~~~~~l~~~~a~~l~~~l~~~~~~~~~vLdlGcGtG~~~~~l~~~~~~~~v~~~D~s~~~~ 83 (273) T Consensus 3 ~idK~~V~~~F~raA~~Yd~~A~-~Q~~~a~~Ll~~l~~--~~~~~vLDlGcGtG~~t~~l~~~~--~~v~~~Dls~~Ml 77 (251) T PRK10258 3 TVNKQAIAAAFGRAAAHYEQHAD-LQRQSADALLAMLPQ--RKFTHVLDAGCGPGWMSRYWRERG--SQVTALDLSPPML 77 (251) T ss_pred CCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHCCC--CCCCCEEEEEEHHHHHHHHHHHCC--CEEEEEECCHHHH T ss_conf 65999999999899865877369-999999999973665--789939998310027899999749--9699995989999 Q ss_pred HHHH------HCCCCCHHHHCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHH Q ss_conf 7531------1001200110143335222666667422234699999999981878708984068676334778899875 Q gi|254780322|r 84 TLKR------EVISCPLEEIPSISQSVDLILSPLNLHIINDTLEMFSKINHMLKPGGMFLAAIPGIGTLHELRKALLKAE 157 (273) Q Consensus 84 ~~~~------~~~~~d~e~l~~~~~sfDli~s~~~l~w~~d~~~~l~~~~r~LkpgG~~~~s~~~~~~~~el~~~~~~a~ 157 (273) T Consensus 78 ~~a~~~~~~~~~~~~D~e~Lp~~~~sfDli~S~~~lqW~~d~~~~l~e~~rvLkPgG~l~fst~g~~tl~ELr~a~~~vd 157 (251) T PRK10258 78 AQARQKDAADHYLAGDIESLPLATATFDLAWSNLAVQWCGNLSTALRELYRVVRPGGVVAFTTLVQGSLPELHQAWQAVD 157 (251) T ss_pred HHHHHHCCCHHHHHCHHHHCCCCCCCCCEEEECCCHHHCCCHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHC T ss_conf 99987486334353606309998788217855040452599999999999645899499998157576899999999831 Q ss_pred HHHHCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEEEEEEEEECCCHHHHHHHHHHHCCHHHHCCCCCCCCCHHHHHHHHH Q ss_conf 45426866421674599999999985089854677313688358989999999961551111055667999889999999 Q gi|254780322|r 158 TELTGGASPRVIPFMDIKSAGTLMEKSGFISPIIDQDTYTVYYKSMLHLMHDLRGMGMSNPLIRRSKTPPYKSLFKRAST 237 (273) Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~ll~~agf~~~~~~~~~~~~~~~~~~~l~~~lk~~g~~~~~~~~~~~~~~k~~~~~~~~ 237 (273) T Consensus 158 ~------~~h~~~f~~~~~~~~~l~~~~~~---~~~~~~~l~f~~~~~lLr~LK~iGa~~~~~~r~~~~~~r~~l~~~~~ 228 (251) T PRK10258 158 E------RPHANRFLPPDAIEQALNGVRYQ---HHIQPITLWFDDALSAMRSLKGIGATHLHEGRDPRILTRSQLQRLQL 228 (251) T ss_pred C------CCCCCCCCCHHHHHHHHHHCCCE---EEEEEEEEECCCHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHH T ss_conf 6------77667889999999998626662---46678999759999999999984378877788889977999999999 Q ss_pred HHHHHCCCCCCCEEEEEEEEEEEEECC Q ss_conf 999962585783788999999999718 Q gi|254780322|r 238 IYTEENSDLTGNVTASFSIIYVMGWKS 264 (273) Q Consensus 238 ~y~~~~~~~dg~I~~tf~ii~~~gwK~ 264 (273) T Consensus 229 ~y~----~~~g~~plTY~viygvi~r~ 251 (251) T PRK10258 229 AWP----QQQGRYPLTYHLFLGVIERD 251 (251) T ss_pred HHC----CCCCCEEEEEEEEEEEEECC T ss_conf 850----44995678999999999769 |
|
| >pfam02384 N6_Mtase N-6 DNA Methylase | Back alignment and domain information |
|---|
Probab=97.82 E-value=8.8e-05 Score=47.21 Aligned_cols=205 Identities=16% Similarity=0.112 Sum_probs=106.8 Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHH-------CCCCEEEEECCHHHHHHHHHHC--------- Q ss_conf 689999999999789863689870999859985899999862-------6970899720011357753110--------- Q gi|254780322|r 26 YFLLDRVAKEIAFRLNMINQTFENALELHGITGIVGYTCMET-------KKIHRMIRAEISTEFSTLKREV--------- 89 (273) Q Consensus 26 ~~l~~~~a~~l~~~l~~~~~~~~~vLdlGcGtG~~~~~l~~~-------~~~~~v~~~D~s~~~~~~~~~~--------- 89 (273) T Consensus 28 ffTPr~Vv~lmv~ll~p--~~~~~V~DPacGtGgfLi~a~~~i~~~~~~~~~~~i~G~E~~~~~~~la~mNm~lhgi~~~ 105 (312) T pfam02384 28 FYTPREVSKLIVELLEP--KPGESIYDPACGSGGFLIQADKFVKSHDGDTNDISIYGQELNPTTYRLARMNMILHGIEYN 105 (312) T ss_pred ECCCHHHHHHHHHHHCC--CCCCEEECCCCCCCHHHHHHHHHHHHHCCCCCCCEEECCCCCHHHHHHHHHHHHHHCCCCC T ss_conf 58878999999998289--9999882168773378999999999843785565563688998999999999998479887 Q ss_pred ----CCCCHHHHC--CCCCCCCHHHHHHH--HHCCCCH--------------------HHHHHHHHHHHCCCCEEEEEEC Q ss_conf ----012001101--43335222666667--4222346--------------------9999999998187870898406 Q gi|254780322|r 90 ----ISCPLEEIP--SISQSVDLILSPLN--LHIINDT--------------------LEMFSKINHMLKPGGMFLAAIP 141 (273) Q Consensus 90 ----~~~d~e~l~--~~~~sfDli~s~~~--l~w~~d~--------------------~~~l~~~~r~LkpgG~~~~s~~ 141 (273) T Consensus 106 ~~~i~~gdsl~~~~~~~~~kfD~IlsNPPFg~k~~~~~~~~~~~~~~~~~~~~~~~~e~~Fiqh~l~~Lk~~GraaiVlp 185 (312) T pfam02384 106 DFGIRHGDTLLSPKFEEDKKFDVVVANPPFNQKWDANDNLENDPRFRAYGVPPKSNADFAFLQHIIYHLSPNGRAAVVLP 185 (312) T ss_pred CCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCHHCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEEC T ss_conf 45521477655767665455118983786466766543210272110368788874429999999985699976999955 Q ss_pred CCCCCH-----HHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEEEEEEEEECCCHHHHHHHHHHHCCH Q ss_conf 867633-----477889987545426866421674599999999985089854677313688358989999999961551 Q gi|254780322|r 142 GIGTLH-----ELRKALLKAETELTGGASPRVIPFMDIKSAGTLMEKSGFISPIIDQDTYTVYYKSMLHLMHDLRGMGMS 216 (273) Q Consensus 142 ~~~~~~-----el~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~agf~~~~~~~~~~~~~~~~~~~l~~~lk~~g~~ 216 (273) T Consensus 186 ~g~Lf~~~~e~~iR~~lle~------~~l~aVI~LP~-----~lF~~tgi~t~ilv~~k~k--~~~~~V~fida~~~~-- 250 (312) T pfam02384 186 NGVLFRGGAEGDIRKALVEK------DLIEAVIALPP-----NLFYNTGIPTCILFLTKNK--ARKGDVLFIDASNEF-- 250 (312) T ss_pred CCCCCCCCHHHHHHHHHHHC------CCEEEEEECCC-----CCCCCCCCCEEEEEEECCC--CCCCCEEEEECCCCC-- T ss_conf 82310465088999999975------97699995897-----7533899847999998898--898968999888545-- Q ss_pred HHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCC Q ss_conf 11105566799988999999999996258578 Q gi|254780322|r 217 NPLIRRSKTPPYKSLFKRASTIYTEENSDLTG 248 (273) Q Consensus 217 ~~~~~~~~~~~~k~~~~~~~~~y~~~~~~~dg 248 (273) T Consensus 251 -~~~~~~~~~l~~~~i~~i~~~~~~~~~~~~~ 281 (312) T pfam02384 251 -EKKGRKLNPLTDEHIEKIVDTYGEWPEDVAG 281 (312) T ss_pred -CCCCCCCCCCCHHHHHHHHHHHHHHHHCCCC T ss_conf -5467778829999999999999753105587 |
Restriction-modification (R-M) systems protect a bacterial cell against invasion of foreign DNA by endonucleolytic cleavage of DNA that lacks a site specific modification. The R-M system is a complex containing three polypeptides: M (this family), S (pfam01420), and R. This family consists of N-6 adenine-specific DNA methylase EC:2.1.1.72 from Type I and Type IC restriction systems. These methylases have the same sequence specificity as their corresponding restriction enzymes. |
| >PRK01683 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-38 Score=239.60 Aligned_cols=229 Identities=15% Similarity=0.185 Sum_probs=175.4 Q ss_pred HHHHHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHCCCCEEEEECCHHHHHHHHHH------CCCCCHHHHCCCCC Q ss_conf 999999999789863689870999859985899999862697089972001135775311------00120011014333 Q gi|254780322|r 29 LDRVAKEIAFRLNMINQTFENALELHGITGIVGYTCMETKKIHRMIRAEISTEFSTLKRE------VISCPLEEIPSISQ 102 (273) Q Consensus 29 ~~~~a~~l~~~l~~~~~~~~~vLdlGcGtG~~~~~l~~~~~~~~v~~~D~s~~~~~~~~~------~~~~d~e~l~~~~~ 102 (273) T Consensus 16 r~rp~~DLl~~l~~--~~~~~vlDlGCG~G~~t~~l~~r~p~a~v~GiD~S~~Ml~~Ar~~~~~~~f~~~D~~~~~~-~~ 92 (252) T PRK01683 16 RTRPAVELLARVPL--ENVEYVADLGCGPGNSTALLHQRWPAARITGIDSSPAMLAEARQALPDCQFVEADIRNWQP-EQ 92 (252) T ss_pred HHCHHHHHHHCCCC--CCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHCCCCEEEECCHHCCCC-CC T ss_conf 64639999841888--8999899937749899999999779987999989899999999758998387250420787-67 Q ss_pred CCCHHHHHHHHHCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHH Q ss_conf 52226666674222346999999999818787089840686763347788998754542686642167459999999998 Q gi|254780322|r 103 SVDLILSPLNLHIINDTLEMFSKINHMLKPGGMFLAAIPGIGTLHELRKALLKAETELTGGASPRVIPFMDIKSAGTLME 182 (273) Q Consensus 103 sfDli~s~~~l~w~~d~~~~l~~~~r~LkpgG~~~~s~~~~~~~~el~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~ 182 (273) T Consensus 93 ~~D~ifSNaalhW~~d~~~~~~~~~~~L~PGG~la~Q~p~n~~~~sh~l~~e~a~~~~~~~--~~~~~~~~~~~Y~~lL~ 170 (252) T PRK01683 93 ALDLIYANASLQWLPDHYELFPHLVSLLAPQGVLAVQMPDNWLEPSHVLMREVAWEQNYPD--RGREPLLGVHAYYDLLA 170 (252) T ss_pred CCCEEEEEEEHHHCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCC--CCCCCCCCHHHHHHHHH T ss_conf 8788956100450787799999999824878799998898757699999999986654240--13667899899999998 Q ss_pred HCCCCCEEEEEEEEEEECCCHHHHHHHHHHHCCHHHHCCCCCCCCCHHHHHHHHHHHHHHCC-CCCCCEEEEEEEEEEEE Q ss_conf 50898546773136883589899999999615511110556679998899999999999625-85783788999999999 Q gi|254780322|r 183 KSGFISPIIDQDTYTVYYKSMLHLMHDLRGMGMSNPLIRRSKTPPYKSLFKRASTIYTEENS-DLTGNVTASFSIIYVMG 261 (273) Q Consensus 183 ~agf~~~~~~~~~~~~~~~~~~~l~~~lk~~g~~~~~~~~~~~~~~k~~~~~~~~~y~~~~~-~~dg~I~~tf~ii~~~g 261 (273) T Consensus 171 ~~g~~v~~w~t~y~~-~l~~~~~v~~Wv~~t~lrP~l~~L~~-~~~~~F~~~y~~~l~~~yp~~~dG~~~~~f~Rlf~vA 248 (252) T PRK01683 171 EAGCEVDIWRTTYYH-PMPSHQAIVDWVTATGLRPWLQDLTE-SEQQAFLTRYHQMLDEAYPLQENGQRLLAFPRLFIVA 248 (252) T ss_pred HCCCEEEEEEEEEEE-ECCCCHHHHHHHHHCCHHHHHHCCCH-HHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEEEEE T ss_conf 578736676677654-46871568899884043687750999-9999999999999998678787997996513799999 Q ss_pred ECC Q ss_conf 718 Q gi|254780322|r 262 WKS 264 (273) Q Consensus 262 wK~ 264 (273) T Consensus 249 ~K~ 251 (252) T PRK01683 249 RRT 251 (252) T ss_pred EEC T ss_conf 807 |
|
| >PRK08317 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-29 Score=192.35 Aligned_cols=219 Identities=17% Similarity=0.109 Sum_probs=154.1 Q ss_pred HHHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHH-CCCCEEEEECCHHHHHHHHH----------HCCCCCHHHHCC Q ss_conf 9999999789863689870999859985899999862-69708997200113577531----------100120011014 Q gi|254780322|r 31 RVAKEIAFRLNMINQTFENALELHGITGIVGYTCMET-KKIHRMIRAEISTEFSTLKR----------EVISCPLEEIPS 99 (273) Q Consensus 31 ~~a~~l~~~l~~~~~~~~~vLdlGcGtG~~~~~l~~~-~~~~~v~~~D~s~~~~~~~~----------~~~~~d~e~l~~ 99 (273) T Consensus 6 ~~r~~~l~~L~l--~pG~~vLDiGcG~G~~~~~la~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~lp~ 83 (241) T PRK08317 6 RYRARTFELLAV--QPGERVLDVGCGPGNDLRELADRVGPEGRVVGIDRSEAMLALARERAAGLLSNVEFVRGDADGLPF 83 (241) T ss_pred HHHHHHHHHCCC--CCCCEEEEECCCCCHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEEECCHHHCCC T ss_conf 999999973699--997999996641749999999974999789999698899999999986228964999554643589 Q ss_pred CCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCH------HHHHHHHHHHHHHHCCCCCCCCCCCC Q ss_conf 333522266666742223469999999998187870898406867633------47788998754542686642167459 Q gi|254780322|r 100 ISQSVDLILSPLNLHIINDTLEMFSKINHMLKPGGMFLAAIPGIGTLH------ELRKALLKAETELTGGASPRVIPFMD 173 (273) Q Consensus 100 ~~~sfDli~s~~~l~w~~d~~~~l~~~~r~LkpgG~~~~s~~~~~~~~------el~~~~~~a~~~~~~~~~~~~~~~~~ 173 (273) T Consensus 84 ~d~sfD~v~~~~~l~h~~d~~~~l~e~~RvLkPGG~~vi~d~Dw~~~~~~~~~~~~~~~i~~~~~--~~~----~~~~~- 156 (241) T PRK08317 84 PDESFDAVRSDRVLQHLEDPRRALAEMARVLRPGGRAVVLDTDWDTLVIHSGDRALMRKILNFWS--DHF----ANPWL- 156 (241) T ss_pred CCCCCCEEEHHHHHHHCCCHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHH--HHC----CCCHH- T ss_conf 88870456221157622589999999999818883899996678867428988899999999999--747----89207- Q ss_pred HHHHHHHHHHCCCCCEEEEEEEEEEECCCHHHHHHHHHHHCCHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEE Q ss_conf 99999999850898546773136883589899999999615511110556679998899999999999625857837889 Q gi|254780322|r 174 IKSAGTLMEKSGFISPIIDQDTYTVYYKSMLHLMHDLRGMGMSNPLIRRSKTPPYKSLFKRASTIYTEENSDLTGNVTAS 253 (273) Q Consensus 174 ~~~~~~ll~~agf~~~~~~~~~~~~~~~~~~~l~~~lk~~g~~~~~~~~~~~~~~k~~~~~~~~~y~~~~~~~dg~I~~t 253 (273) T Consensus 157 gr~L~~~l~~aG~~~v~~~~~~~~~~~~~~~~~~~~l~~~~----~~~~~~g~~t~~e~~~w~~~l~~~--~~~g~f~~~ 230 (241) T PRK08317 157 GRRLPGLFREAGLTDIEVEPYTLIETDLKEADKGFDLIRIA----RYAVEAGAISADEADAWLADLAEL--ARKGEFFFS 230 (241) T ss_pred HHHHHHHHHHCCCCEEEEEEEEEECCCCCCCCHHHHHHHHH----HHHHHCCCCCHHHHHHHHHHHHHH--HHCCCEEEE T ss_conf 89999999986990568888778426866353487999999----999983999999999999999998--738987999 Q ss_pred EEEEEEEEECC Q ss_conf 99999999718 Q gi|254780322|r 254 FSIIYVMGWKS 264 (273) Q Consensus 254 f~ii~~~gwK~ 264 (273) T Consensus 231 ~~~f~v~grKP 241 (241) T PRK08317 231 VTGFLVVGRKP 241 (241) T ss_pred EEEEEEEEECC T ss_conf 88899999678 |
|
| >COG4106 Tam Trans-aconitate methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-28 Score=186.60 Aligned_cols=224 Identities=15% Similarity=0.144 Sum_probs=174.6 Q ss_pred HHHHCCC-CCCCEEEECCCCCHHHHHHHHHCCCCEEEEECCHHHHHHHHH------HCCCCCHHHHCCCCCCCCHHHHHH Q ss_conf 8986368-987099985998589999986269708997200113577531------100120011014333522266666 Q gi|254780322|r 39 RLNMINQ-TFENALELHGITGIVGYTCMETKKIHRMIRAEISTEFSTLKR------EVISCPLEEIPSISQSVDLILSPL 111 (273) Q Consensus 39 ~l~~~~~-~~~~vLdlGcGtG~~~~~l~~~~~~~~v~~~D~s~~~~~~~~------~~~~~d~e~l~~~~~sfDli~s~~ 111 (273) T Consensus 22 Lla~Vp~~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rlp~~~f~~aDl~~w~-p~~~~dllfaNA 100 (257) T COG4106 22 LLARVPLERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRLPDATFEEADLRTWK-PEQPTDLLFANA 100 (257) T ss_pred HHHHCCCCCCCEEEECCCCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHCCCCCEECCCHHHCC-CCCCCCHHHHHH T ss_conf 9864786664103455778877889999868888676046999999999974899732105275449-987633033443 Q ss_pred HHHCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHH----HCCCCCCCCCCCCHHHHHHHHHHCCCC Q ss_conf 7422234699999999981878708984068676334778899875454----268664216745999999999850898 Q gi|254780322|r 112 NLHIINDTLEMFSKINHMLKPGGMFLAAIPGIGTLHELRKALLKAETEL----TGGASPRVIPFMDIKSAGTLMEKSGFI 187 (273) Q Consensus 112 ~l~w~~d~~~~l~~~~r~LkpgG~~~~s~~~~~~~~el~~~~~~a~~~~----~~~~~~~~~~~~~~~~~~~ll~~agf~ 187 (273) T Consensus 101 vlqWlpdH~~ll~rL~~~L~Pgg~LAVQmPdN~depsH~~mr~~A~~~p~~~~l~~~~~~r~~v~s~a~Yy~lLa~~~~r 180 (257) T COG4106 101 VLQWLPDHPELLPRLVSQLAPGGVLAVQMPDNLDEPSHRLMRETADEAPFAQELGGRGLTRAPLPSPAAYYELLAPLACR 180 (257) T ss_pred HHHHCCCCHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHCCCHHHHHCCCCCCCCCCCCHHHHHHHHCCCCCE T ss_conf 66443640899999998508885699978876476457999998742836666276654467789989999985765432 Q ss_pred CEEEEEEEEEEECCCHHHHHHHHHHHCCHHHHCCCCCCCCCHHHHHHHHHHHHHHCC-CCCCCEEEEEEEEEEEEECCC Q ss_conf 546773136883589899999999615511110556679998899999999999625-857837889999999997188 Q gi|254780322|r 188 SPIIDQDTYTVYYKSMLHLMHDLRGMGMSNPLIRRSKTPPYKSLFKRASTIYTEENS-DLTGNVTASFSIIYVMGWKST 265 (273) Q Consensus 188 ~~~~~~~~~~~~~~~~~~l~~~lk~~g~~~~~~~~~~~~~~k~~~~~~~~~y~~~~~-~~dg~I~~tf~ii~~~gwK~~ 265 (273) T Consensus 181 vDiW~T~Y~-h~l~~a~aIvdWvkgTgLrP~L~~L~e~-~~~~FL~~Y~~~l~~aYP~~~dGr~ll~FpRlFiVA~~~~ 257 (257) T COG4106 181 VDIWHTTYY-HQLPGADAIVDWVKGTGLRPYLDRLDEE-ERQRFLDRYLALLAEAYPPRADGRVLLAFPRLFIVATRGE 257 (257) T ss_pred EEEEEEECC-CCCCCCCCHHHHEECCCCCEECCCCCHH-HHHHHHHHHHHHHHHHCCCCCCCCEEEECCEEEEEEECCC T ss_conf 554541234-3379863222110024542002015989-9999999999999976887669828863352899984379 |
|
| >PTZ00098 phosphoethanolamine N-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=6e-26 Score=170.68 Aligned_cols=199 Identities=14% Similarity=0.100 Sum_probs=140.0 Q ss_pred HHHHHHHHHHCCC-CCCCEEEECCCCCHHHHHHHHHCCCCEEEEECCHHHHHHHHH---------HCCCCCHHHHCCCCC Q ss_conf 9999978986368-987099985998589999986269708997200113577531---------100120011014333 Q gi|254780322|r 33 AKEIAFRLNMINQ-TFENALELHGITGIVGYTCMETKKIHRMIRAEISTEFSTLKR---------EVISCPLEEIPSISQ 102 (273) Q Consensus 33 a~~l~~~l~~~~~-~~~~vLdlGcGtG~~~~~l~~~~~~~~v~~~D~s~~~~~~~~---------~~~~~d~e~l~~~~~ 102 (273) T Consensus 41 ~~~~l~~---l~L~~~~kVLDvGCG~GG~a~~LA~~yg-~~V~GiDls~~~~~~A~er~~~~~~v~f~~~d~~~~~f~d~ 116 (263) T PTZ00098 41 TKKILSD---IELDANSKVLDIGSGLGGGCKYINEKYG-AHTHGIDICEKIVNIAKERNQDKAKIEFEAKDILKKDFPEN 116 (263) T ss_pred HHHHHHC---CCCCCCCEEEEECCCCCHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCC T ss_conf 9999850---4889998688868887889999999749-87999858899999999855125854899678536778867 Q ss_pred CCCHHHHHHHHHCCC--CHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHH Q ss_conf 522266666742223--469999999998187870898406867633477889987545426866421674599999999 Q gi|254780322|r 103 SVDLILSPLNLHIIN--DTLEMFSKINHMLKPGGMFLAAIPGIGTLHELRKALLKAETELTGGASPRVIPFMDIKSAGTL 180 (273) Q Consensus 103 sfDli~s~~~l~w~~--d~~~~l~~~~r~LkpgG~~~~s~~~~~~~~el~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l 180 (273) T Consensus 117 sFDvV~S~dailHip~~DK~~l~~e~~RvLKPGG~llitDw~~~~~~~~s~~~~~y-------i~~r~~~l~s~~~Y~~~ 189 (263) T PTZ00098 117 NFDLIYSRDAILHLSLADKKKLFEKCYKWLKPNGILLITDYCADEIENWDDEFKAY-------IKKRKYTLIPIEEYADI 189 (263) T ss_pred CEEEEEEEHHHHCCCHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCHHHHHH-------HHHCCCCCCCHHHHHHH T ss_conf 45589875022308824399999999998468878999750135789973989999-------98468766799999999 Q ss_pred HHHCCCCCEEEEEEEEEEECCCHHHHHHHHHHHCCHHHHCCCCCCCCCHHHHHHHHHHHHHHCCC-CCCC Q ss_conf 98508985467731368835898999999996155111105566799988999999999996258-5783 Q gi|254780322|r 181 MEKSGFISPIIDQDTYTVYYKSMLHLMHDLRGMGMSNPLIRRSKTPPYKSLFKRASTIYTEENSD-LTGN 249 (273) Q Consensus 181 l~~agf~~~~~~~~~~~~~~~~~~~l~~~lk~~g~~~~~~~~~~~~~~k~~~~~~~~~y~~~~~~-~dg~ 249 (273) T Consensus 190 l~~aGF~~v~~~Drt--~~~~~--~~~~el~~le~~---~~e~~~~~s~ed~~~~v~gW~~ki~~~~~G~ 252 (263) T PTZ00098 190 IKACKFKNVEAKDIS--DYWLE--LLELEHKKLEEK---KEEFLKLFSEKEFISLDDGWSRKIKDSKRDL 252 (263) T ss_pred HHHCCCCEEEEECCH--HHHHH--HHHHHHHHHHHH---HHHHHHHCCHHHHHHHHHHHHHHHHCCCCCC T ss_conf 997799667875142--89999--999999999860---9998763599999999999999985036773 |
|
| >PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed | Back alignment and domain information |
|---|
Probab=95.86 E-value=0.13 Score=28.78 Aligned_cols=207 Identities=15% Similarity=0.065 Sum_probs=123.2 Q ss_pred HHHHHHHH------HHHHHHHH-HCC-CCCCCEEEECCCCCHHHHHHHHHCCCCEEEEECCHHHHHHH---H-------- Q ss_conf 68999999------99997898-636-89870999859985899999862697089972001135775---3-------- Q gi|254780322|r 26 YFLLDRVA------KEIAFRLN-MIN-QTFENALELHGITGIVGYTCMETKKIHRMIRAEISTEFSTL---K-------- 86 (273) Q Consensus 26 ~~l~~~~a------~~l~~~l~-~~~-~~~~~vLdlGcGtG~~~~~l~~~~~~~~v~~~D~s~~~~~~---~-------- 86 (273) T Consensus 464 ~w~~r~~~~~~~~l~~~~~rl~~~~~~qr~~~vl~l~~~sll~~~~~l~~~peggv~~~~~~~~~~~rL~aQl~lLdpL~ 543 (726) T PRK13341 464 RWLQRQLGQEGERLRILRDRLWSGITWQRHDRVLNLANRSLLWALEPLRAVPEGGVTVLCESSDDIVRLEAQLDLLDPLG 543 (726) T ss_pred HHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCEEEEECCCCHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHCCHHC T ss_conf 99999873143799999999843366563435998338512652677861899866998378889999999987468111 Q ss_pred -HHCCCCCH---HHHCCCCCCCCHHHHHHHHHCCCCHH--HHHHHHHHHHCCCCEEEEEE--CCCCCCH----------H Q ss_conf -11001200---11014333522266666742223469--99999999818787089840--6867633----------4 Q gi|254780322|r 87 -REVISCPL---EEIPSISQSVDLILSPLNLHIINDTL--EMFSKINHMLKPGGMFLAAI--PGIGTLH----------E 148 (273) Q Consensus 87 -~~~~~~d~---e~l~~~~~sfDli~s~~~l~w~~d~~--~~l~~~~r~LkpgG~~~~s~--~~~~~~~----------e 148 (273) T Consensus 544 RP~Ll~~~~~~l~~L~-~~~~FE~IgGR~~~~~l~~~~~~~~~q~L~~~l~p~g~l~Ll~S~P~~Gpa~all~~~~~~~~ 622 (726) T PRK13341 544 RPVLLDAGLLALKYLP-ANLQFEWIGGRNGLDDLLYKADEELWQQLTEKLTPNGGLRLLISQPEAGPALALLLKAPVEDK 622 (726) T ss_pred CCCEEECCCHHHHHCC-CCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHCCCCCHHH T ss_conf 9711216711465379-876424783332002342256999999999865998669986357764807887356940489 Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEEEEEEEEECCCHHHHHHHHHHHCCHHHHCCCCCCCCC Q ss_conf 77889987545426866421674599999999985089854677313688358989999999961551111055667999 Q gi|254780322|r 149 LRKALLKAETELTGGASPRVIPFMDIKSAGTLMEKSGFISPIIDQDTYTVYYKSMLHLMHDLRGMGMSNPLIRRSKTPPY 228 (273) Q Consensus 149 l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~agf~~~~~~~~~~~~~~~~~~~l~~~lk~~g~~~~~~~~~~~~~~ 228 (273) T Consensus 623 ~l~~L~~aEe~wl~~-------~~~~~~Lqq~le~~gwsl~~e~W~e~lsL~i~~~Li~RWf~~g~~---Yr~~l~~~l~ 692 (726) T PRK13341 623 LLSALLEAEELWLKS-------QSMPALLQQQLEEAGWSLGIEEWTEELSLGVDSKLIKRWLAQGPD---YRQAVGTNLE 692 (726) T ss_pred HHHHHHHHHHHHHHC-------CCCHHHHHHHHHHCCCCCEEEEHHCCCCCCCCHHHHHHHHCCCCH---HHHHHHCCCC T ss_conf 999999999999626-------888599999999748845351300156787886999988338964---9999853299 Q ss_pred HHHHHHHHHHHHHHC Q ss_conf 889999999999962 Q gi|254780322|r 229 KSLFKRASTIYTEEN 243 (273) Q Consensus 229 k~~~~~~~~~y~~~~ 243 (273) T Consensus 693 ~~~i~~L~~~l~~~l 707 (726) T PRK13341 693 EEVLCNLDELLTKIL 707 (726) T ss_pred HHHHHHHHHHHHHHH T ss_conf 999999999999874 |
|
| >PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.9e-30 Score=195.89 Aligned_cols=186 Identities=17% Similarity=0.152 Sum_probs=142.7 Q ss_pred HHHHHHHHHHHHCCCCCCHHH----HHHHHHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHH-CCCCEEEEECCHHH Q ss_conf 899998577663174622068----9999999999789863689870999859985899999862-69708997200113 Q gi|254780322|r 7 MQLINRNRLRSFRQKDFSVYF----LLDRVAKEIAFRLNMINQTFENALELHGITGIVGYTCMET-KKIHRMIRAEISTE 81 (273) Q Consensus 7 ~~~i~~~~~ra~~~~~~~~~~----l~~~~a~~l~~~l~~~~~~~~~vLdlGcGtG~~~~~l~~~-~~~~~v~~~D~s~~ 81 (273) T Consensus 10 ~~~V~~~Fd~iA~~YD~~N~~~S~G~~~~Wr~~~v~~l~~--~~g~~vLDvgcGTG~~~~~l~~~~~~~~~v~g~D~S~~ 87 (239) T PRK00216 10 QEKVAEVFDSIAPKYDLMNDLLSFGLHRVWRRKTIKWLGV--RPGDKVLDLACGTGDLAIALAKAVGETGEVVGLDFSEG 87 (239) T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCC--CCCCEEEEECCCCCHHHHHHHHHCCCCCEEEEEECCHH T ss_conf 9999999988787885876675075199999999986278--99998988457763879999997299767999919889 Q ss_pred HHHHHH------------HCCCCCHHHHCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCHHH Q ss_conf 577531------------10012001101433352226666674222346999999999818787089840686763347 Q gi|254780322|r 82 FSTLKR------------EVISCPLEEIPSISQSVDLILSPLNLHIINDTLEMFSKINHMLKPGGMFLAAIPGIGTLHEL 149 (273) Q Consensus 82 ~~~~~~------------~~~~~d~e~l~~~~~sfDli~s~~~l~w~~d~~~~l~~~~r~LkpgG~~~~s~~~~~~~~el 149 (273) T Consensus 88 ML~~A~~k~~~~~~~~~i~~~~~da~~lpf~d~sfD~v~~~f~l~~~~d~~~~l~E~~RVLkPGG~l~ilefs~p~~~~~ 167 (239) T PRK00216 88 MLAVGREKLLDKGLSGNVEFVQGDAEALPFPDNSFDAVTIAFGLRNVPDIDKALREMYRVLKPGGRLVILEFSKPTNPPL 167 (239) T ss_pred HHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCEEEECCCHHHHHHHHHHHCCCCEEEEEEECCCCCCHHH T ss_conf 99999999997389888507982355688876667650026156714867999999998766480899997589997688 Q ss_pred HHHHHHH--------------HHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEEEE Q ss_conf 7889987--------------54542686642167459999999998508985467731 Q gi|254780322|r 150 RKALLKA--------------ETELTGGASPRVIPFMDIKSAGTLMEKSGFISPIIDQD 194 (273) Q Consensus 150 ~~~~~~a--------------~~~~~~~~~~~~~~~~~~~~~~~ll~~agf~~~~~~~~ 194 (273) T Consensus 168 ~~~y~~Y~~~ilP~ig~~~~~~~~aY~YL~~Si~~fp~~~~~~~~l~~aGF~~v~~~~l 226 (239) T PRK00216 168 KKAYDFYLFKVLPLIGKLVSKNAEAYRYLAESIRAFPDQEELAAMMEEAGFERVKYRNL 226 (239) T ss_pred HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCEEEEEEC T ss_conf 99999999999999999971987888769999998889999999999879967889987 |
|
| >pfam01209 Ubie_methyltran ubiE/COQ5 methyltransferase family | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.4e-29 Score=190.47 Aligned_cols=188 Identities=16% Similarity=0.128 Sum_probs=144.4 Q ss_pred CCHHHHHHHHHHHHCCCCCCHHH----HHHHHHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHH-CCCCEEEEECCH Q ss_conf 01899998577663174622068----9999999999789863689870999859985899999862-697089972001 Q gi|254780322|r 5 FDMQLINRNRLRSFRQKDFSVYF----LLDRVAKEIAFRLNMINQTFENALELHGITGIVGYTCMET-KKIHRMIRAEIS 79 (273) Q Consensus 5 fd~~~i~~~~~ra~~~~~~~~~~----l~~~~a~~l~~~l~~~~~~~~~vLdlGcGtG~~~~~l~~~-~~~~~v~~~D~s 79 (273) T Consensus 4 ~K~~~V~~mF~~Ia~~YD~~N~~~S~G~~~~WR~~~v~~~~~--~~g~~vLDl~cGTG~~~~~l~~~~~~~~~v~gvD~S 81 (233) T pfam01209 4 LKEQRVGDVFSSVASKYDLMNDVISFGIHRLWKDFTMKCMGV--KRGNKFLDVAGGTGDWTFGLSDSAGSSGKVVGLDIN 81 (233) T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCC--CCCCEEEEECCCCCHHHHHHHHHHCCCCEEEEEECC T ss_conf 089999999986365887888786073499999999986189--999989982540588999999984999749999699 Q ss_pred HHHHHHHHH-----------CCCCCHHHHCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCHH Q ss_conf 135775311-----------001200110143335222666667422234699999999981878708984068676334 Q gi|254780322|r 80 TEFSTLKRE-----------VISCPLEEIPSISQSVDLILSPLNLHIINDTLEMFSKINHMLKPGGMFLAAIPGIGTLHE 148 (273) Q Consensus 80 ~~~~~~~~~-----------~~~~d~e~l~~~~~sfDli~s~~~l~w~~d~~~~l~~~~r~LkpgG~~~~s~~~~~~~~e 148 (273) T Consensus 82 ~~ML~~a~~k~~~~~~~~i~~~~~da~~lpf~d~sfD~v~~~fglrn~~d~~~al~E~~RVLKPGG~l~ilefs~P~~~~ 161 (233) T pfam01209 82 ENMLKEGEKKAKEEGKYNIEFLQGNAEELPFEDDSFDIVTISFGLRNFPDYLKVLKEAFRVLKPGGRVVCLEFSKPENPL 161 (233) T ss_pred HHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHCCCCCEEEEEECCCCCCHH T ss_conf 99999999999856999836998216668866656573142101212588899999999872789789999788887779 Q ss_pred HHHHHHHH--------------HHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEEEE Q ss_conf 77889987--------------54542686642167459999999998508985467731 Q gi|254780322|r 149 LRKALLKA--------------ETELTGGASPRVIPFMDIKSAGTLMEKSGFISPIIDQD 194 (273) Q Consensus 149 l~~~~~~a--------------~~~~~~~~~~~~~~~~~~~~~~~ll~~agf~~~~~~~~ 194 (273) T Consensus 162 ~~~~~~~Y~~~ilP~ig~~~~~~~~aY~YL~~Si~~fp~~~~~~~~l~~~GF~~v~~~~l 221 (233) T pfam01209 162 LSQAYELYFKYVMPFMGKMFAKSYKSYQYLQESIRDFPDQKTLASMFEKAGFKSVGYESL 221 (233) T ss_pred HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCEEEEEEC T ss_conf 999999999535999779984998998519999998799999999999879977789987 |
|
| >TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.2e-26 Score=173.28 Aligned_cols=186 Identities=15% Similarity=0.140 Sum_probs=142.7 Q ss_pred CCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHC--CCCCCCEEEECCCCCHHHHHHHHHC---------CCC Q ss_conf 20018999985776631746220689999999999789863--6898709998599858999998626---------970 Q gi|254780322|r 3 ILFDMQLINRNRLRSFRQKDFSVYFLLDRVAKEIAFRLNMI--NQTFENALELHGITGIVGYTCMETK---------KIH 71 (273) Q Consensus 3 ~~fd~~~i~~~~~ra~~~~~~~~~~l~~~~a~~l~~~l~~~--~~~~~~vLdlGcGtG~~~~~l~~~~---------~~~ 71 (273) T Consensus 3 ~~F~~--iA~~YD~~N~~--lSf-G~h~~Wr~~~~~~~~~~~E~k~~~~~LDvA~GTGD~a~~~~k~~~~~~~a~~~~~~ 77 (242) T TIGR01934 3 EMFDR--IAPKYDLLNDL--LSF-GLHRLWRRRAVKLIGVQLEGKKGQKVLDVACGTGDLAIELAKKAGKVGKAAETERA 77 (242) T ss_pred HHHHH--HHHHHHHHHHH--HHH-HHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCHHHHHHHHHHHCCCCCCCCCCCCE T ss_conf 47877--64435267557--767-43289999999987862368888977887238399999998635755533577633 Q ss_pred EEEEECCHHHHHHHHH---------------HCCCCCHHHHCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHCCCCEE Q ss_conf 8997200113577531---------------1001200110143335222666667422234699999999981878708 Q gi|254780322|r 72 RMIRAEISTEFSTLKR---------------EVISCPLEEIPSISQSVDLILSPLNLHIINDTLEMFSKINHMLKPGGMF 136 (273) Q Consensus 72 ~v~~~D~s~~~~~~~~---------------~~~~~d~e~l~~~~~sfDli~s~~~l~w~~d~~~~l~~~~r~LkpgG~~ 136 (273) T Consensus 78 ~vtg~D~S~~ML~~a~kk~~~~~r~~~~~~~~f~~~dA~~LPF~D~sFD~~TiaFGlRN~~d~~~aL~E~~RVLKpgG~l 157 (242) T TIGR01934 78 KVTGVDFSEEMLEVAKKKAPNEERKALSANVSFIEADAEALPFEDNSFDAVTIAFGLRNVTDIQKALREMYRVLKPGGRL 157 (242) T ss_pred EEEEEECCHHHHHHHHHHHHHHHHHHHHCCCHHEECHHHCCCCCCCCEEEEEEECCCCCCCCHHHHHHHHHHCCCCCCEE T ss_conf 78987079889999987413420033321642110005508799862444664025547468678987731101889879 Q ss_pred EEEECCCCCC-HHHHHHHHHH--------------HHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEEE Q ss_conf 9840686763-3477889987--------------5454268664216745999999999850898546773 Q gi|254780322|r 137 LAAIPGIGTL-HELRKALLKA--------------ETELTGGASPRVIPFMDIKSAGTLMEKSGFISPIIDQ 193 (273) Q Consensus 137 ~~s~~~~~~~-~el~~~~~~a--------------~~~~~~~~~~~~~~~~~~~~~~~ll~~agf~~~~~~~ 193 (273) T Consensus 158 ~iLEf~~P~~~~~~~~~Y~~Y~~~v~P~~G~~~s~~~~aY~YL~eSi~~FP~~~~l~~~~~~aGF~~~~~~~ 229 (242) T TIGR01934 158 VILEFSKPANGAFLKKFYKFYLKNVLPSIGGLISKNKEAYEYLPESIRAFPSQEELAAMLKEAGFEEVRYRS 229 (242) T ss_pred EEECCCCCCCHHHHHHHHHHHHHCHHHHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCEEECC T ss_conf 984078676416889999988500037777774078866577889987538988999999973863211003 |
Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity. |
| >PRK05134 3-demethylubiquinone-9 3-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.1e-23 Score=157.46 Aligned_cols=184 Identities=14% Similarity=0.097 Sum_probs=132.9 Q ss_pred CHHHHHHHHHHHHCCC-CCCH--HHHHHHHHHHHHHHHHHC-CCCCCCEEEECCCCCHHHHHHHHHCCCCEEEEECCHHH Q ss_conf 1899998577663174-6220--689999999999789863-68987099985998589999986269708997200113 Q gi|254780322|r 6 DMQLINRNRLRSFRQK-DFSV--YFLLDRVAKEIAFRLNMI-NQTFENALELHGITGIVGYTCMETKKIHRMIRAEISTE 81 (273) Q Consensus 6 d~~~i~~~~~ra~~~~-~~~~--~~l~~~~a~~l~~~l~~~-~~~~~~vLdlGcGtG~~~~~l~~~~~~~~v~~~D~s~~ 81 (273) T Consensus 5 d~~Ei-~~F~~la~~WWd~~g~~~~Lh~~N~~R~~~i~~~~~~l~G~~ILDVGCGgG~lse~LAr~G--a~VtGID~S~~ 81 (233) T PRK05134 5 DPAEI-AKFSALAARWWDPNGEFKPLHRINPLRLNYIREHAGGLFGKRVLDVGCGGGILSESMARLG--ATVTGIDASEE 81 (233) T ss_pred CHHHH-HHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCC--CEEEEECCCHH T ss_conf 99999-9999889984799999607888369999999975146689989997558971128999679--97999879989 Q ss_pred HHHHHH----------HCCCCCHHHH-CCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHH Q ss_conf 577531----------1001200110-14333522266666742223469999999998187870898406867633477 Q gi|254780322|r 82 FSTLKR----------EVISCPLEEI-PSISQSVDLILSPLNLHIINDTLEMFSKINHMLKPGGMFLAAIPGIGTLHELR 150 (273) Q Consensus 82 ~~~~~~----------~~~~~d~e~l-~~~~~sfDli~s~~~l~w~~d~~~~l~~~~r~LkpgG~~~~s~~~~~~~~el~ 150 (273) T Consensus 82 ~I~~Ar~ha~~~~l~i~y~~~~~e~l~~~~~~~FDvV~~~EVlEHV~d~~~~l~~~~rlLKPGG~l~lsTiNr-t~~S~l 160 (233) T PRK05134 82 NIEVARLHALESGLKIDYRQITAEELAAEHPGQFDVVTCMEMLEHVPDPASFIRACAKLVKPGGLVFFSTLNR-NLKSYL 160 (233) T ss_pred HHHHHHHHHHHCCCCCEEEECCHHHHHHHCCCCEEEEEEEHHHHHCCCHHHHHHHHHHHHCCCCEEEEECCCC-CHHHHH T ss_conf 9999999856443451167514766543057863477442147753899999999999738991499972678-989999 Q ss_pred HHHHHHHHH--HHCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEEE Q ss_conf 889987545--4268664216745999999999850898546773 Q gi|254780322|r 151 KALLKAETE--LTGGASPRVIPFMDIKSAGTLMEKSGFISPIIDQ 193 (273) Q Consensus 151 ~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~ll~~agf~~~~~~~ 193 (273) T Consensus 161 ~~i~~AEyil~~vP~gTH~w~kFi~P~el~~~l~~~~~~~~~~~G 205 (233) T PRK05134 161 LAIVGAEYILRMLPKGTHDYKKFIKPSELAAWLRQAGLEVQDIKG 205 (233) T ss_pred HHHHHHHHHHCCCCCCCCCHHHCCCHHHHHHHHHHCCCEEEEEEE T ss_conf 999999888604999985866679999999999987995721000 |
|
| >KOG1540 consensus | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.8e-21 Score=144.62 Aligned_cols=181 Identities=14% Similarity=0.136 Sum_probs=129.2 Q ss_pred HHHHHHHHHHHCCCCCCH----HHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHCCC------CEEEEEC Q ss_conf 999985776631746220----689999999999789863689870999859985899999862697------0899720 Q gi|254780322|r 8 QLINRNRLRSFRQKDFSV----YFLLDRVAKEIAFRLNMINQTFENALELHGITGIVGYTCMETKKI------HRMIRAE 77 (273) Q Consensus 8 ~~i~~~~~ra~~~~~~~~----~~l~~~~a~~l~~~l~~~~~~~~~vLdlGcGtG~~~~~l~~~~~~------~~v~~~D 77 (273) T Consensus 60 ~~V~~vF~~vA~~YD~mND~mSlGiHRlWKd~~v~~L~p~--~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~D 137 (296) T KOG1540 60 RLVHHVFESVAKKYDIMNDAMSLGIHRLWKDMFVSKLGPG--KGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLD 137 (296) T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCC--CCCEEEEECCCCCHHHHHHHHHHCCCCCCCCCEEEEEE T ss_conf 4899999988888877888762123678888766215877--78758983477525677798761134577776179993 Q ss_pred CHHHHHHHHH--------------HCCCCCHHHHCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHCCCCEEEEEECCC Q ss_conf 0113577531--------------10012001101433352226666674222346999999999818787089840686 Q gi|254780322|r 78 ISTEFSTLKR--------------EVISCPLEEIPSISQSVDLILSPLNLHIINDTLEMFSKINHMLKPGGMFLAAIPGI 143 (273) Q Consensus 78 ~s~~~~~~~~--------------~~~~~d~e~l~~~~~sfDli~s~~~l~w~~d~~~~l~~~~r~LkpgG~~~~s~~~~ 143 (273) T Consensus 138 inp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~LpFdd~s~D~yTiafGIRN~th~~k~l~EAYRVLKpGGrf~cLeFsk 217 (296) T KOG1540 138 INPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDLPFDDDSFDAYTIAFGIRNVTHIQKALREAYRVLKPGGRFSCLEFSK 217 (296) T ss_pred CCHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCEEEEEECCEECCCCHHHHHHHHHHHCCCCCEEEEEECCC T ss_conf 89899999987775159776871699947701089997751158884211147877899999987527786799997354 Q ss_pred CCCHHHHHHHHH--------------HHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCCEE Q ss_conf 763347788998--------------75454268664216745999999999850898546 Q gi|254780322|r 144 GTLHELRKALLK--------------AETELTGGASPRVIPFMDIKSAGTLMEKSGFISPI 190 (273) Q Consensus 144 ~~~~el~~~~~~--------------a~~~~~~~~~~~~~~~~~~~~~~~ll~~agf~~~~ 190 (273) T Consensus 218 v~~~~l~~fy~~ysf~VlpvlG~~iagd~~sYqYLveSI~rfp~qe~f~~miedaGF~~~~ 278 (296) T KOG1540 218 VENEPLKWFYDQYSFDVLPVLGEIIAGDRKSYQYLVESIRRFPPQEEFASMIEDAGFSSVN 278 (296) T ss_pred CCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCC T ss_conf 5407789999712223211055766521765454776650699889999999972875102 |
|
| >TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase; InterPro: IPR010233 This entry represents an O-methyltransferase, which is believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and mitochondria (COQ3) , | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.5e-21 Score=144.98 Aligned_cols=165 Identities=16% Similarity=0.189 Sum_probs=126.2 Q ss_pred HHHHHHHHHHHHH---HHH--HHCCCCCCCEEEECCCCCHHHHHHHHHCCCCEEEEECCHHHHHHHHH------------ Q ss_conf 0689999999999---789--86368987099985998589999986269708997200113577531------------ Q gi|254780322|r 25 VYFLLDRVAKEIA---FRL--NMINQTFENALELHGITGIVGYTCMETKKIHRMIRAEISTEFSTLKR------------ 87 (273) Q Consensus 25 ~~~l~~~~a~~l~---~~l--~~~~~~~~~vLdlGcGtG~~~~~l~~~~~~~~v~~~D~s~~~~~~~~------------ 87 (273) T Consensus 58 ~~lLP~~~~~~l~E~QE~~~~~~~~~~G~~vLDVGCGGGlLsE~lAR~Ga~~-V~GID~~~~~i~~Ak~Ha~~~~~~~~~ 136 (275) T TIGR01983 58 KDLLPEYVAKPLKEDQESIRDELLKDSGLRVLDVGCGGGLLSEPLARLGANK-VTGIDASEENIEVAKLHAKKDPLQEAL 136 (275) T ss_pred HHCCCHHHCCCCHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHCCCCE-EEEEECHHHHHHHHHHHHHHCCCHHHH T ss_conf 1117254336701025567763411789779984278578889997558842-577521177999999888733402331 Q ss_pred ----HCCCCCHHHHCCC---CCCCCHHHHHHHHHCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHH--H Q ss_conf ----1001200110143---335222666667422234699999999981878708984068676334778899875--4 Q gi|254780322|r 88 ----EVISCPLEEIPSI---SQSVDLILSPLNLHIINDTLEMFSKINHMLKPGGMFLAAIPGIGTLHELRKALLKAE--T 158 (273) Q Consensus 88 ----~~~~~d~e~l~~~---~~sfDli~s~~~l~w~~d~~~~l~~~~r~LkpgG~~~~s~~~~~~~~el~~~~~~a~--~ 158 (273) T Consensus 137 ~K~i~Y~~~~~E~l~~~~h~~~~FD~V~~mEvlEHV~dp~~f~~~c~~llkPgG~lF~STIN-Rt~kS~~~aIvgAEYiL 215 (275) T TIGR01983 137 DKKIEYRCTSVEELAEEQHTKKSFDVVTCMEVLEHVPDPQAFIKACAQLLKPGGILFFSTIN-RTPKSYLLAIVGAEYIL 215 (275) T ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEEEECCCCHHHHHHHHHHHCCCCCCEEEECCC-HHHHHHHHHHHHHHHHH T ss_conf 11145444307887305578415733764320000278889999999850899848973000-21899999999999985 Q ss_pred HHHCCCCCCCCCCCCHHHHHHHHH----HCCCCCEEE Q ss_conf 542686642167459999999998----508985467 Q gi|254780322|r 159 ELTGGASPRVIPFMDIKSAGTLME----KSGFISPII 191 (273) Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~ll~----~agf~~~~~ 191 (273) T Consensus 216 r~vPKGTH~~~KFi~P~EL~~~l~d~N~~~~l~~~~~ 252 (275) T TIGR01983 216 RWVPKGTHDWEKFIKPSELTSWLEDDNRSAGLRVKDV 252 (275) T ss_pred HCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCEEEEEE T ss_conf 1689872471015387999999851264676489975 |
A separate methylase (MenG/UbiE) catalyses the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.; GO: 0008425 2-polyprenyl-6-methoxy-14-benzoquinone methyltransferase activity, 0006744 ubiquinone biosynthetic process. |
| >PRK11036 putative metallothionein SmtA; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=5.6e-20 Score=135.88 Aligned_cols=185 Identities=16% Similarity=0.191 Sum_probs=127.4 Q ss_pred CCCHHHHHHHHHHHHCCCCCCHHHHHHHHH-HHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHCCCCEEEEECCHHHH Q ss_conf 001899998577663174622068999999-9999789863689870999859985899999862697089972001135 Q gi|254780322|r 4 LFDMQLINRNRLRSFRQKDFSVYFLLDRVA-KEIAFRLNMINQTFENALELHGITGIVGYTCMETKKIHRMIRAEISTEF 82 (273) Q Consensus 4 ~fd~~~i~~~~~ra~~~~~~~~~~l~~~~a-~~l~~~l~~~~~~~~~vLdlGcGtG~~~~~l~~~~~~~~v~~~D~s~~~ 82 (273) T Consensus 5 nFd~--ia~kF~~~iYgt~K-G-~iR~avl~~dl~~~l~~l~~~plrVLDvG~G~G~~a~~lA~~G--h~Vt~~D~S~~m 78 (256) T PRK11036 5 NFDD--IAEKFSRNIYGTTK-G-QIRQAIVWQDLDRLLAELGPRPLRVLDAGGGEGQTAIKMAELG--HQVTLCDLSAEM 78 (256) T ss_pred CHHH--HHHHHHHHCCCCCC-H-HHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHCC--CEEEEECCCHHH T ss_conf 4667--89999984547772-2-8999999999999998469999839983798779899999779--979986699999 Q ss_pred HHHHH------------HCCCCCHHHHC-CCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCHHH Q ss_conf 77531------------10012001101-433352226666674222346999999999818787089840686763347 Q gi|254780322|r 83 STLKR------------EVISCPLEEIP-SISQSVDLILSPLNLHIINDTLEMFSKINHMLKPGGMFLAAIPGIGTLHEL 149 (273) Q Consensus 83 ~~~~~------------~~~~~d~e~l~-~~~~sfDli~s~~~l~w~~d~~~~l~~~~r~LkpgG~~~~s~~~~~~~~el 149 (273) T Consensus 79 L~~A~~~a~~~gv~~~~~~v~~~~q~l~~~~~~~fDlVlcHaVLE~v~dP~~~l~~l~~~lkPGG~lSLmfyN~~a-lv~ 157 (256) T PRK11036 79 IQRAKQAAEAKGVSDNMQFIHCAAQDIAQHLETPVDLILFHAVLEWVADPKSVLQTLWSVLRPGGALSLMFYNANG-LLM 157 (256) T ss_pred HHHHHHHHHHCCCCCEEEEEECCHHHHHHHCCCCCCEEEEEHHHHHCCCHHHHHHHHHHHHCCCCEEEEEECCHHH-HHH T ss_conf 9999999886496612798856899885423688667865136772378999999999975899379998428516-999 Q ss_pred HHHH----HHHHHHHHCCCCC---CCCCCCCHHHHHHHHHHCCCCCEEEEEEEE Q ss_conf 7889----9875454268664---216745999999999850898546773136 Q gi|254780322|r 150 RKAL----LKAETELTGGASP---RVIPFMDIKSAGTLMEKSGFISPIIDQDTY 196 (273) Q Consensus 150 ~~~~----~~a~~~~~~~~~~---~~~~~~~~~~~~~ll~~agf~~~~~~~~~~ 196 (273) T Consensus 158 ~n~l~Gnf~~a~~~~~~~~~~~LtP~~p-~~p~~V~~~l~~~g~~i~~~~GIRv 210 (256) T PRK11036 158 HNMVAGNFDYVQAGMPKRKKRTLSPQYP-RDPAQVYQWLEEAGWQIMGKTGVRV 210 (256) T ss_pred HHHHHCCHHHHHHHCCCCCCCCCCCCCC-CCHHHHHHHHHHCCCEEEEEEEEEE T ss_conf 9998258999973063445521689999-9999999999977982776678999 |
|
| >PRK11088 rrmA 23S rRNA methyltransferase A; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.7e-19 Score=133.07 Aligned_cols=160 Identities=19% Similarity=0.215 Sum_probs=118.7 Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHCC---CCEEEEECCHHHHHHHHH------HCCCCCHHHH Q ss_conf 8999999999978986368987099985998589999986269---708997200113577531------1001200110 Q gi|254780322|r 27 FLLDRVAKEIAFRLNMINQTFENALELHGITGIVGYTCMETKK---IHRMIRAEISTEFSTLKR------EVISCPLEEI 97 (273) Q Consensus 27 ~l~~~~a~~l~~~l~~~~~~~~~vLdlGcGtG~~~~~l~~~~~---~~~v~~~D~s~~~~~~~~------~~~~~d~e~l 97 (273) T Consensus 69 pl~~~i~~~~~~~~---~~~~~~ilD~GCGEGyYl~~l~~~l~~~~~~~~~G~DiSK~ai~~Aak~~~~~~~~Va~~~~l 145 (272) T PRK11088 69 PLRDAVANLLAERL---DEKATAILDIGCGEGYYTHALADALPEVTTCQLFGLDISKVAIKYAAKRYPQVTFCVASSHRL 145 (272) T ss_pred HHHHHHHHHHHHHC---CCCCCEEEEECCCCCHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHCCCCCCEEEEEECCCC T ss_conf 99999999999756---777864888158777899999997411578737998117999999962688854999610018 Q ss_pred CCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHH Q ss_conf 14333522266666742223469999999998187870898406867633477889987545426866421674599999 Q gi|254780322|r 98 PSISQSVDLILSPLNLHIINDTLEMFSKINHMLKPGGMFLAAIPGIGTLHELRKALLKAETELTGGASPRVIPFMDIKSA 177 (273) Q Consensus 98 ~~~~~sfDli~s~~~l~w~~d~~~~l~~~~r~LkpgG~~~~s~~~~~~~~el~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 177 (273) T Consensus 146 P~~d~s~D~vl~vFs-------P~~~~Ef~RvLkp~G~li~V~P~~~HL~eLre~lY~~---------~~~~~~~-~--- 205 (272) T PRK11088 146 PFADQSLDAIIRIYA-------PCKAEELARVVKPGGIVITVTPGPRHLFELKGLIYDE---------VRLHAPE-A--- 205 (272) T ss_pred CCCCCCCEEEEEEEC-------CCCHHHHHHEECCCCEEEEEECCHHHHHHHHHHHHHC---------CCCCCCC-H--- T ss_conf 887665408999843-------7885886124637978999978888999999997515---------6647554-1--- Q ss_pred HHHHHHCCCCCEEEEEEEEEEECCCHHHHHHHHHHHC Q ss_conf 9999850898546773136883589899999999615 Q gi|254780322|r 178 GTLMEKSGFISPIIDQDTYTVYYKSMLHLMHDLRGMG 214 (273) Q Consensus 178 ~~ll~~agf~~~~~~~~~~~~~~~~~~~l~~~lk~~g 214 (273) T Consensus 206 -~~~--~~F~~~~~~~v~~~~~l~~~~~--~~Ll~MT 237 (272) T PRK11088 206 -EQL--EGFELQHSERLAYPMRLTGSEA--VALLQMT 237 (272) T ss_pred -HHH--CCCCEEEEEEEEEEEECCHHHH--HHHHHCC T ss_conf -254--3684426899999986588999--9997079 |
|
| >PRK07580 Mg-protoporphyrin IX methyl transferase; Validated | Back alignment and domain information |
|---|
Probab=99.75 E-value=5.5e-17 Score=118.42 Aligned_cols=190 Identities=16% Similarity=0.116 Sum_probs=126.6 Q ss_pred CHHHHHHHHHHHHCC------CCCCHHHHHHHHH-------HHHHHHHHH-CCCCCCCEEEECCCCCHHHHHHHHHCCCC Q ss_conf 189999857766317------4622068999999-------999978986-36898709998599858999998626970 Q gi|254780322|r 6 DMQLINRNRLRSFRQ------KDFSVYFLLDRVA-------KEIAFRLNM-INQTFENALELHGITGIVGYTCMETKKIH 71 (273) Q Consensus 6 d~~~i~~~~~ra~~~------~~~~~~~l~~~~a-------~~l~~~l~~-~~~~~~~vLdlGcGtG~~~~~l~~~~~~~ 71 (273) T Consensus 9 ~r~~v~~YFd~ta~~~W~rltsd~pVs~vr~tVR~Gr~~mr~~~l~wl~~~~dl~G~rVLDaGCGtG~la~~LA~~G--a 86 (230) T PRK07580 9 HKSEVRTYFNGTGFDRWARIYSDAPVSKVRATVRAGHQRMRDTVLSWLPADGDLTGLSILDAGCGTGSLSIPLARRG--A 86 (230) T ss_pred HHHHHHHHHCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHCC--C T ss_conf 99999998464789999997088972599999997699999999997310599789989881878678799999779--9 Q ss_pred EEEEECCHHHHHHHHHH------------CCCCCHHHHCCCCCCCCHHHHHHHHHCCC--CHHHHHHHHHHHHCCCCEEE Q ss_conf 89972001135775311------------00120011014333522266666742223--46999999999818787089 Q gi|254780322|r 72 RMIRAEISTEFSTLKRE------------VISCPLEEIPSISQSVDLILSPLNLHIIN--DTLEMFSKINHMLKPGGMFL 137 (273) Q Consensus 72 ~v~~~D~s~~~~~~~~~------------~~~~d~e~l~~~~~sfDli~s~~~l~w~~--d~~~~l~~~~r~LkpgG~~~ 137 (273) T Consensus 87 ~V~avDiS~~mi~~A~~Ra~~~g~~~~v~F~~gDle~~---~G~FD~Vv~mdvLiHYp~~d~~~~l~~la~~--~~~~~i 161 (230) T PRK07580 87 KVVASDISPQMVEEARERAPEAGLDGNITFEVGDLESL---LGSFDTVVCLDVLIHYPQEDAERMLAHLASL--TRGSLI 161 (230) T ss_pred EEEEEECCHHHHHHHHHHHHHHCCCCCCEEEECCCCCC---CCCCCCHHHCCCEEECCHHHHHHHHHHHHHC--CCCEEE T ss_conf 89998389999999997558627876753896676545---7986602333715545788999999999725--588599 Q ss_pred EEECCCCCCHHHHHHHHHHHHHHHCCCC--CCCCCCCCHHHHHHHHHHCCCCCEEEEEEEEEEECCCHHHHH Q ss_conf 8406867633477889987545426866--421674599999999985089854677313688358989999 Q gi|254780322|r 138 AAIPGIGTLHELRKALLKAETELTGGAS--PRVIPFMDIKSAGTLMEKSGFISPIIDQDTYTVYYKSMLHLM 207 (273) Q Consensus 138 ~s~~~~~~~~el~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~ll~~agf~~~~~~~~~~~~~~~~~~~l~ 207 (273) T Consensus 162 fTfAP-~T~l--L~~m~~i-GklFP~~drsp~~~p-~~~~~l~~~l~~~g~~v~r~~ri~~gFY~S~~lE~~ 228 (230) T PRK07580 162 FTFAP-YTPL--LALLHWI-GGFFPGPSRTTRIYP-HREKGIRRALAEAGFKVVRTERISSGFYFSRLLEAV 228 (230) T ss_pred EEECC-CCHH--HHHHHHH-HHHCCCCCCCCCEEE-CCHHHHHHHHHHCCCEEEECCCCCCCCHHHHHHHHH T ss_conf 99689-8699--9999998-643899999972697-388999999996698675123325611598899986 |
|
| >pfam02353 CMAS Cyclopropane-fatty-acyl-phospholipid synthase | Back alignment and domain information |
|---|
Probab=99.70 E-value=3.1e-16 Score=114.02 Aligned_cols=174 Identities=16% Similarity=0.080 Sum_probs=117.8 Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHCCCCEEEEECCHHHHHHHHHH------------CCCCCH Q ss_conf 89999999999789863689870999859985899999862697089972001135775311------------001200 Q gi|254780322|r 27 FLLDRVAKEIAFRLNMINQTFENALELHGITGIVGYTCMETKKIHRMIRAEISTEFSTLKRE------------VISCPL 94 (273) Q Consensus 27 ~l~~~~a~~l~~~l~~~~~~~~~vLdlGcGtG~~~~~l~~~~~~~~v~~~D~s~~~~~~~~~------------~~~~d~ 94 (273) T Consensus 45 ~AQ~~Kl~~i~~~l~l--~~g~~vLDiGCGWG~~a~~~a~~~-g~~v~giTlS~~Q~~~~~~r~~~~gl~~~v~v~~~Dy 121 (273) T pfam02353 45 EAQQAKLDLILDKLGL--KPGMTLLDIGCGWGGLMRRAAERY-DVNVVGLTLSKNQYKLARQRVAAEGLQRKVEVLLQDY 121 (273) T ss_pred HHHHHHHHHHHHHCCC--CCCCEEEEECCCCHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHHCCCCCCCCEEECCH T ss_conf 9999999999986588--999989997888089999999847-9518999797899999999998708743212000626 Q ss_pred HHHCCCCCCCCHHHHHHHHHCC--CCHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHH-HHHHHCCCCCCCCCC Q ss_conf 1101433352226666674222--3469999999998187870898406867633477889987-545426866421674 Q gi|254780322|r 95 EEIPSISQSVDLILSPLNLHII--NDTLEMFSKINHMLKPGGMFLAAIPGIGTLHELRKALLKA-ETELTGGASPRVIPF 171 (273) Q Consensus 95 e~l~~~~~sfDli~s~~~l~w~--~d~~~~l~~~~r~LkpgG~~~~s~~~~~~~~el~~~~~~a-~~~~~~~~~~~~~~~ 171 (273) T Consensus 122 rd~---~~~fD~IvSiem~Ehvg~~~~~~~f~~i~~~LkpgG~~~iq~i~~~~~~~~~~~~~~~~fi~k--yIFPG-G~l 195 (273) T pfam02353 122 RDF---DEPFDRIVSVGMFEHVGHENYDTFFKKLYNLLPPGGLMLLHTITGLHPDETSERGLPLKFIDK--YIFPG-GEL 195 (273) T ss_pred HHC---CCCCCEEEEEHHHHHCCHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCHHHCCCCCCHHHH--HCCCC-CCC T ss_conf 547---666666776516876287779999999998658897399999942573210102774200777--60799-878 Q ss_pred CCHHHHHHHHHHCCCCCEEEEEEEEEEECCCHHHHHHHHHHH Q ss_conf 599999999985089854677313688358989999999961 Q gi|254780322|r 172 MDIKSAGTLMEKSGFISPIIDQDTYTVYYKSMLHLMHDLRGM 213 (273) Q Consensus 172 ~~~~~~~~ll~~agf~~~~~~~~~~~~~~~~~~~l~~~lk~~ 213 (273) T Consensus 196 Ps~~~~~~~~~~~~l~v~~~~~--~g~HYa~--TL~~W~~nf 233 (273) T pfam02353 196 PSISMIVESSSEAGFTVEDVES--LRPHYAK--TLDLWAENL 233 (273) T ss_pred CCHHHHHHHHHHCCCEEEEEEE--CCHHHHH--HHHHHHHHH T ss_conf 9999999999868948867676--7365999--999999999 |
This family consist of Cyclopropane-fatty-acyl-phospholipid synthase or CFA synthase EC:2.1.1.79 this enzyme catalyse the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid <= S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. |
| >TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase; InterPro: IPR014122 MenG is a generic term for a methyltransferase that catalyses the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species | Back alignment and domain information |
|---|
Probab=99.68 E-value=7.3e-16 Score=111.87 Aligned_cols=188 Identities=13% Similarity=0.103 Sum_probs=136.8 Q ss_pred HHHHHHHHHHCCCCCCHHH--HHHHHHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHH-CCCCEEEEECCHHHHHHH Q ss_conf 9998577663174622068--9999999999789863689870999859985899999862-697089972001135775 Q gi|254780322|r 9 LINRNRLRSFRQKDFSVYF--LLDRVAKEIAFRLNMINQTFENALELHGITGIVGYTCMET-KKIHRMIRAEISTEFSTL 85 (273) Q Consensus 9 ~i~~~~~ra~~~~~~~~~~--l~~~~a~~l~~~l~~~~~~~~~vLdlGcGtG~~~~~l~~~-~~~~~v~~~D~s~~~~~~ 85 (273) T Consensus 6 ~vh~vf~~i~~~yd~mnsvis~~~h~~Wr~~~m~~m~v~~G~~~ldvCCGt~dW~~~l~~~~G~~G~v~Gldfs~nml~~ 85 (231) T TIGR02752 6 RVHKVFEKIYKKYDRMNSVISFQRHKKWRKDTMKRMNVQKGKKALDVCCGTADWAIALAEAVGKEGEVKGLDFSENMLSV 85 (231) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCHHHHHHHHHHHCCCCCEEEEHHHHHHHHH T ss_conf 89999999987543577788889888899999877656404121121037337888988861777716740035889999 Q ss_pred HHH-----------CCCCCHHHHCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHH Q ss_conf 311-----------001200110143335222666667422234699999999981878708984068676334778899 Q gi|254780322|r 86 KRE-----------VISCPLEEIPSISQSVDLILSPLNLHIINDTLEMFSKINHMLKPGGMFLAAIPGIGTLHELRKALL 154 (273) Q Consensus 86 ~~~-----------~~~~d~e~l~~~~~sfDli~s~~~l~w~~d~~~~l~~~~r~LkpgG~~~~s~~~~~~~~el~~~~~ 154 (273) T Consensus 86 ~~~k~~~~~~~~~~l~hGnam~lP~~~~~fdyvtiGfGlrnvPdy~~vl~em~rv~kPGG~~~C~~tsqP~~~~~~q~y~ 165 (231) T TIGR02752 86 GKQKVKDAKLSNVELVHGNAMELPYDDNSFDYVTIGFGLRNVPDYMTVLKEMARVVKPGGKVVCLETSQPTLPGFKQLYF 165 (231) T ss_pred HHHHHHHHHHHHEEEECCCHHCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHH T ss_conf 99888754320022230520017877666125775255123026999999988862799717986257762579999999 Q ss_pred HHHHHH--------------HCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEEEEEE Q ss_conf 875454--------------268664216745999999999850898546773136 Q gi|254780322|r 155 KAETEL--------------TGGASPRVIPFMDIKSAGTLMEKSGFISPIIDQDTY 196 (273) Q Consensus 155 ~a~~~~--------------~~~~~~~~~~~~~~~~~~~ll~~agf~~~~~~~~~~ 196 (273) T Consensus 166 ~yf~~~mP~~Gk~~ak~y~eysWlqes~~~fPG~~~l~~~f~~~G~~~v~~~~~~~ 221 (231) T TIGR02752 166 FYFKYIMPLFGKLFAKSYKEYSWLQESAREFPGKDELAEMFKEAGLKDVEVKSYTG 221 (231) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCHHHEEEEECCC T ss_conf 99999988777888643345577777765178678999999852701122310013 |
Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.. |
| >TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase; InterPro: IPR010251 Chlorophyll and bacteriochlorophyll are essential photosynthetic pigments involved in oxygenic and non-oxygenic photosythesis respectively | Back alignment and domain information |
|---|
Probab=99.60 E-value=7.3e-15 Score=106.04 Aligned_cols=184 Identities=14% Similarity=0.020 Sum_probs=120.0 Q ss_pred HHHHHHHHHH------HHCCCCCCHHHHHHHHH-------HHHHHHHHHC-CCCCCCEEEECCCCCHHHHHHHHHCCCCE Q ss_conf 8999985776------63174622068999999-------9999789863-68987099985998589999986269708 Q gi|254780322|r 7 MQLINRNRLR------SFRQKDFSVYFLLDRVA-------KEIAFRLNMI-NQTFENALELHGITGIVGYTCMETKKIHR 72 (273) Q Consensus 7 ~~~i~~~~~r------a~~~~~~~~~~l~~~~a-------~~l~~~l~~~-~~~~~~vLdlGcGtG~~~~~l~~~~~~~~ 72 (273) T Consensus 2 k~~v~~YFd~~af~rW~~i~~-~~vs~~r~~vR~Gr~~~~~~~l~wL~~d~~l~G~~vlDAGCGtGllsi~LAk~G--A~ 78 (224) T TIGR02021 2 KEQVRHYFDGTAFQRWARIYG-DPVSRVRQTVREGRAAMREKLLEWLPKDRSLKGKKVLDAGCGTGLLSIELAKRG--AI 78 (224) T ss_pred CCCHHHCCCCCHHHHHHHHCC-CCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCHHHHHHHHCC--CE T ss_conf 430210248738899998716-730478999997699999999985467889876777755889315449888479--86 Q ss_pred EEEECCHHHHHHHHH-------------HCCCCCHHHHCCCCCCCCHHHHHHHHHCC--CCHHHHHHHHHHHHCCCCEEE Q ss_conf 997200113577531-------------10012001101433352226666674222--346999999999818787089 Q gi|254780322|r 73 MIRAEISTEFSTLKR-------------EVISCPLEEIPSISQSVDLILSPLNLHII--NDTLEMFSKINHMLKPGGMFL 137 (273) Q Consensus 73 v~~~D~s~~~~~~~~-------------~~~~~d~e~l~~~~~sfDli~s~~~l~w~--~d~~~~l~~~~r~LkpgG~~~ 137 (273) T Consensus 79 V~A~DIS~~mv~~A~~r~~~~~~~~nl~~FeV~Dl~s~~~--G~fD~VV~mDvlIHYp~~d~~~~l~~Laslt~~--~~~ 154 (224) T TIGR02021 79 VKAVDISEQMVELARERAEKEDEAGNLVEFEVNDLESLEL--GKFDAVVAMDVLIHYPAEDIAKALEHLASLTKE--RVI 154 (224) T ss_pred EEEEHHHHHHHHHHHHHCCCCCCCCCCCEEEECCHHHHCC--CCCCEEEEEHHHHHCCHHHHHHHHHHHHHHHCC--CEE T ss_conf 8662376899999986210021016700354530444138--985556752122320222279999998874358--648 Q ss_pred EEECCCCCCHHHHHHHHHHHHHHHCCCCCCC-CCCCCHHHHHHHHHHC----CCCCEEEEEEEEEEECC Q ss_conf 8406867633477889987545426866421-6745999999999850----89854677313688358 Q gi|254780322|r 138 AAIPGIGTLHELRKALLKAETELTGGASPRV-IPFMDIKSAGTLMEKS----GFISPIIDQDTYTVYYK 201 (273) Q Consensus 138 ~s~~~~~~~~el~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~ll~~a----gf~~~~~~~~~~~~~~~ 201 (273) T Consensus 155 ft-fAP~T~~l~--~~~~-IG~lFP~s~R~t~~~~h~~~~~~R~l~~~eallG~~i~~~~~vS~gFY~S 219 (224) T TIGR02021 155 FT-FAPKTAYLA--FLKA-IGELFPRSDRATAIYLHPEKDLERALGELEALLGWKISKEGRVSTGFYIS 219 (224) T ss_pred EE-ECCCCHHHH--HHHH-HHHCCCCCCCCCEEEECCCCHHHHHHHHHHHHHCCEEEEECCEEHHHHHH T ss_conf 98-678767899--9998-51027889888515207860388997667666331566311032243556 |
They are both synthesised from protoporphyrin IX in complex pathways which share many common steps. The second committed step in both pathways is the methylation of magnesium protoporphyrin IX, catalysed by magnesium protoporphyrin O-methyltransferase with S-adenosyl methionine (SAM) as the methyl donor , , .Sequence alignments suggest that the protein contains the characteristic seven-stranded beta-sheet fold found in other SAM-dependent methyltransferases. This entry represents magnesium protoporphyrin O-methyltransferase from cyanobacteria and plants, where it is known as ChlM, and from other photosynthetic bacteria, where it is known as BchM.; GO: 0046406 magnesium protoporphyrin IX methyltransferase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process. |
| >COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.58 E-value=2.5e-14 Score=102.92 Aligned_cols=163 Identities=17% Similarity=0.121 Sum_probs=110.4 Q ss_pred HHHHHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHCCCCEEEEECCHHHHHHHHHHCCC---------CCHHHHCC Q ss_conf 999999999789863689870999859985899999862697089972001135775311001---------20011014 Q gi|254780322|r 29 LDRVAKEIAFRLNMINQTFENALELHGITGIVGYTCMETKKIHRMIRAEISTEFSTLKREVIS---------CPLEEIPS 99 (273) Q Consensus 29 ~~~~a~~l~~~l~~~~~~~~~vLdlGcGtG~~~~~l~~~~~~~~v~~~D~s~~~~~~~~~~~~---------~d~e~l~~ 99 (273) T Consensus 57 Q~~k~~~~~~kl~L--~~G~~lLDiGCGWG~l~~~aA~~y-~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd 133 (283) T COG2230 57 QRAKLDLILEKLGL--KPGMTLLDIGCGWGGLAIYAAEEY-GVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRD 133 (283) T ss_pred HHHHHHHHHHHCCC--CCCCEEEEECCCHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHHCCCCCCCEEEECCCCC T ss_conf 99999999975699--999989874788449999999984-997999668999999999999975997660799656210 Q ss_pred CCCCCCHHHHHHHHHCCCC--HHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHH Q ss_conf 3335222666667422234--69999999998187870898406867633477889987545426866421674599999 Q gi|254780322|r 100 ISQSVDLILSPLNLHIIND--TLEMFSKINHMLKPGGMFLAAIPGIGTLHELRKALLKAETELTGGASPRVIPFMDIKSA 177 (273) Q Consensus 100 ~~~sfDli~s~~~l~w~~d--~~~~l~~~~r~LkpgG~~~~s~~~~~~~~el~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 177 (273) T Consensus 134 ~~e~fDrIvSvgmfEhvg~~~~~~ff~~~~~~L~~~G~~llh~I~~~~~~~~~~~~~-i~~y----iFPg-G~lPs~~~i 207 (283) T COG2230 134 FEEPFDRIVSVGMFEHVGKENYDDFFKKVYALLKPGGRMLLHSITGPDQEFRRFPDF-IDKY----IFPG-GELPSISEI 207 (283) T ss_pred CCCCCCEEEEHHHHHHHCCCCHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCHHH-HHHH----CCCC-CCCCCHHHH T ss_conf 324342055600688737102899999999645999659999966788554433278-9985----7899-848977999 Q ss_pred HHHHHHCCCCCEEEEEEEEEEECCC Q ss_conf 9999850898546773136883589 Q gi|254780322|r 178 GTLMEKSGFISPIIDQDTYTVYYKS 202 (273) Q Consensus 178 ~~ll~~agf~~~~~~~~~~~~~~~~ 202 (273) T Consensus 208 ~~~~~~~~~~v~~--~~~~~~hYa~ 230 (283) T COG2230 208 LELASEAGFVVLD--VESLRPHYAR 230 (283) T ss_pred HHHHHHCCCEEEH--HHHHCHHHHH T ss_conf 9988756868842--7640677899 |
|
| >PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=8.4e-13 Score=93.99 Aligned_cols=158 Identities=16% Similarity=0.153 Sum_probs=104.9 Q ss_pred HHHHHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHCCCCEEEEECCHHHHHHHHHHCCC--------CCHHHHCCC Q ss_conf 999999999789863689870999859985899999862697089972001135775311001--------200110143 Q gi|254780322|r 29 LDRVAKEIAFRLNMINQTFENALELHGITGIVGYTCMETKKIHRMIRAEISTEFSTLKREVIS--------CPLEEIPSI 100 (273) Q Consensus 29 ~~~~a~~l~~~l~~~~~~~~~vLdlGcGtG~~~~~l~~~~~~~~v~~~D~s~~~~~~~~~~~~--------~d~e~l~~~ 100 (273) T Consensus 152 Q~~Kl~~i~~kl~l--~~G~~VLeIGcGWGgla~~aA~~~-g~~VtgiTlS~eQ~~~a~~r~~gl~v~v~l~DYRd~--- 225 (383) T PRK11705 152 QEAKLDLICRKLQL--KPGMRVLDIGCGWGGLARYAAEHY-GVSVVGVTISAEQQKLAQERCAGLPVEIRLQDYRDL--- 225 (383) T ss_pred HHHHHHHHHHHCCC--CCCCEEEEECCCHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHCCCCCEEEECCHHHC--- T ss_conf 99999999986489--999979885787499999999974-975999858899999999997389878997152443--- Q ss_pred CCCCCHHHHHHHHHCC--CCHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHH Q ss_conf 3352226666674222--34699999999981878708984068676334778899875454268664216745999999 Q gi|254780322|r 101 SQSVDLILSPLNLHII--NDTLEMFSKINHMLKPGGMFLAAIPGIGTLHELRKALLKAETELTGGASPRVIPFMDIKSAG 178 (273) Q Consensus 101 ~~sfDli~s~~~l~w~--~d~~~~l~~~~r~LkpgG~~~~s~~~~~~~~el~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 178 (273) T Consensus 226 ~g~fD~IvSIeM~EhVG~~~~~~yF~~i~~lLkp~G~~~lqtI~~~~~~~~~d~f----I~kY--IFPG-G~LPs~~~i~ 298 (383) T PRK11705 226 NGQFDRIVSVGMFEHVGPKNYRTYFEVVDRCLKPDGLFLLHTIGSNKTDTNVDPW----INKY--IFPN-GCLPSVRQIA 298 (383) T ss_pred CCCCCEEEEEEHHHHCCHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCHH----HHHH--CCCC-CCCCCHHHHH T ss_conf 6773559997148652877799999999985699973999993366777765512----8884--6789-8799989999 Q ss_pred HHHHHCCCCCEEEEEEEEEEECCC Q ss_conf 999850898546773136883589 Q gi|254780322|r 179 TLMEKSGFISPIIDQDTYTVYYKS 202 (273) Q Consensus 179 ~ll~~agf~~~~~~~~~~~~~~~~ 202 (273) T Consensus 299 ~a~~~-~~--~~~d~~~~g~hYa~ 319 (383) T PRK11705 299 QASEG-LF--VMEDWHNFGADYDR 319 (383) T ss_pred HHHHC-CC--EEEEEECCHHHHHH T ss_conf 99858-93--89863047564999 |
|
| >PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.7e-10 Score=80.51 Aligned_cols=136 Identities=13% Similarity=0.153 Sum_probs=88.6 Q ss_pred HHHHHHHHHHHHHH-HHCCCCCCCEEEECCCCCHHHHHHHHHCCCCEEEEECCHHHHHHHHHH-----------CCCCCH Q ss_conf 89999999999789-863689870999859985899999862697089972001135775311-----------001200 Q gi|254780322|r 27 FLLDRVAKEIAFRL-NMINQTFENALELHGITGIVGYTCMETKKIHRMIRAEISTEFSTLKRE-----------VISCPL 94 (273) Q Consensus 27 ~l~~~~a~~l~~~l-~~~~~~~~~vLdlGcGtG~~~~~l~~~~~~~~v~~~D~s~~~~~~~~~-----------~~~~d~ 94 (273) T Consensus 89 LIPRPETE~LVe~~l~~~~~~~~~ilDlgtGSGcI~isLa~~~p~~~v~a~DiS~~Al~~A~~Na~~~~l~~v~~~~~d~ 168 (277) T PRK09328 89 LIPRPDTECLVEQALARLPEQPCRILDLGTGTGAIALALASERPDCEVTAVDRMPDAVALAQRNAQHLAIKNVRILQSDW 168 (277) T ss_pred EEECCCHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEEEECCC T ss_conf 64088179999999996453788189954556999999998677989999648999999999999980988699994475 Q ss_pred HHHCCCCCCCCHHHHHHH------HHCC-------------------CCHHHHHHHHHHHHCCCCEEEEEECCCCCCHHH Q ss_conf 110143335222666667------4222-------------------346999999999818787089840686763347 Q gi|254780322|r 95 EEIPSISQSVDLILSPLN------LHII-------------------NDTLEMFSKINHMLKPGGMFLAAIPGIGTLHEL 149 (273) Q Consensus 95 e~l~~~~~sfDli~s~~~------l~w~-------------------~d~~~~l~~~~r~LkpgG~~~~s~~~~~~~~el 149 (273) T Consensus 169 ~~-~~~~~~fDlIVSNPPYI~~~~~~~~~~~v~~EP~~AL~gg~dGl~~~~~ii~~a~~~L~~~G~l~~Ei-g~~Q---- 242 (277) T PRK09328 169 FS-ALSGQQFAMIVSNPPYIDAQDPHLQQGDVRFEPLSALVAADNGMADLAHIIEQARQYLVPGGWLLLEH-GWQQ---- 242 (277) T ss_pred HH-HCCCCCCCEEEECCCCCCCCHHHHCCHHCCCCCHHHHHCCCCHHHHHHHHHHHHHHHCCCCCEEEEEE-CHHH---- T ss_conf 21-13787778899789987700034382421668389981797589999999999998446698999996-8158---- Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEE Q ss_conf 7889987545426866421674599999999985089854677 Q gi|254780322|r 150 RKALLKAETELTGGASPRVIPFMDIKSAGTLMEKSGFISPIID 192 (273) Q Consensus 150 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~agf~~~~~~ 192 (273) T Consensus 243 ------------------------~~~v~~l~~~~gf~~i~~~ 261 (277) T PRK09328 243 ------------------------GEAVRQLFIRAGYSDVETC 261 (277) T ss_pred ------------------------HHHHHHHHHHCCCCEEEEE T ss_conf ------------------------9999999996799704786 |
|
| >pfam07942 N2227 N2227-like protein | Back alignment and domain information |
|---|
Probab=98.86 E-value=1.2e-07 Score=63.86 Aligned_cols=148 Identities=16% Similarity=0.152 Sum_probs=95.5 Q ss_pred HHHHHHHHHHHHHHH--CCCCCCCEEEECCCCCHHHHHHHHHCCCCEEEEECCHHHHHHHHHHC---------------- Q ss_conf 999999999978986--36898709998599858999998626970899720011357753110---------------- Q gi|254780322|r 28 LLDRVAKEIAFRLNM--INQTFENALELHGITGIVGYTCMETKKIHRMIRAEISTEFSTLKREV---------------- 89 (273) Q Consensus 28 l~~~~a~~l~~~l~~--~~~~~~~vLdlGcGtG~~~~~l~~~~~~~~v~~~D~s~~~~~~~~~~---------------- 89 (273) T Consensus 37 ~~~pI~~~L~~~~p~~~~~~~~~~VLVPGaGLGRLa~Eia~~G~--~~~gNE~S~~Mllas~fiLn~~~~~~~~~i~Pfi 114 (268) T pfam07942 37 LYKPIIEELNRLFPSRSHDRSKIRILVPGAGLGRLAYELATLGY--QVQGNEFSYFMLLCSNFILNYCKEENQITIYPFI 114 (268) T ss_pred HHHHHHHHHHHHCCCCCCCCCCCEEEECCCCCHHHHHHHHHCCC--EEEEECCCHHHHHHHHHHHHCCCCCCCEEEECCC T ss_conf 89999999998679875677782899769880378999872564--6887212199999999998525877828996325 Q ss_pred -----------------------------------CCCCHHHH-CCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHCCC Q ss_conf -----------------------------------01200110-143335222666667422234699999999981878 Q gi|254780322|r 90 -----------------------------------ISCPLEEI-PSISQSVDLILSPLNLHIINDTLEMFSKINHMLKPG 133 (273) Q Consensus 90 -----------------------------------~~~d~e~l-~~~~~sfDli~s~~~l~w~~d~~~~l~~~~r~Lkpg 133 (273) T Consensus 115 ~~~Sn~~~~~dqlr~v~iPDv~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~d~VvT~FFIDTA~Ni~~Yi~tI~~lLkpg 194 (268) T pfam07942 115 HSFSNQLTRDDQLRPVQIPDVHPLSELGPRGNFSMCAGDFLEVYGEDANSYDVVVTCFFIDTAHNVLEYIDTIEKILKPG 194 (268) T ss_pred CCCCCCCCHHHCEEEEECCCCCCCCCCCCCCCEEEEEEEEEEECCCCCCCCCEEEEEEEEECHHHHHHHHHHHHHHHCCC T ss_conf 36668789889755576588681014799984148700358983888782268999987664688999999999983669 Q ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEE Q ss_conf 70898406867633477889987545426866421674599999999985089854677 Q gi|254780322|r 134 GMFLAAIPGIGTLHELRKALLKAETELTGGASPRVIPFMDIKSAGTLMEKSGFISPIID 192 (273) Q Consensus 134 G~~~~s~~~~~~~~el~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~agf~~~~~~ 192 (273) T Consensus 195 G~WI--N~GPL-----lyh~~--~----~~~~~si--ELs~eEi~~l~~~~GF~~~~~~ 238 (268) T pfam07942 195 GHWI--NLGPL-----LYHFE--P----LPDEMSI--ELSLEDIKRLATKRGFKDEKEE 238 (268) T ss_pred CEEE--ECCCC-----CCCCC--C----CCCCCCE--ECCHHHHHHHHHHCCCEEEEEE T ss_conf 8899--64670-----12457--7----7887600--0689999999985697799888 |
This family features sequences that are similar to a region of hypothetical yeast gene product N2227. This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions. |
| >pfam01234 NNMT_PNMT_TEMT NNMT/PNMT/TEMT family | Back alignment and domain information |
|---|
Probab=98.74 E-value=2.2e-07 Score=62.37 Aligned_cols=151 Identities=9% Similarity=0.083 Sum_probs=101.4 Q ss_pred HHHHHHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHCCCCEEEEECCHHHHHHHH--------------------- Q ss_conf 99999999997898636898709998599858999998626970899720011357753--------------------- Q gi|254780322|r 28 LLDRVAKEIAFRLNMINQTFENALELHGITGIVGYTCMETKKIHRMIRAEISTEFSTLK--------------------- 86 (273) Q Consensus 28 l~~~~a~~l~~~l~~~~~~~~~vLdlGcGtG~~~~~l~~~~~~~~v~~~D~s~~~~~~~--------------------- 86 (273) T Consensus 38 ~~~f~l~~l~~~f~~g~~kg~~LiDvG~GPtiy~~lsA~~~f-~~I~lsDy~~~Nr~el~kWl~~ep~afDWs~~~~~v~ 116 (261) T pfam01234 38 IVLFFLPNLLQTFGPGGVKGDTLIDIGSGPTIYQLLSACEVF-KEIHLSDYLPQNRDELIKWLKKEPGAFDWSPVLKHIC 116 (261) T ss_pred CHHHHHHHHHHHHCCCCCCCCEEEEECCCCHHHHHHHHHHHC-CEEEECCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHH T ss_conf 337889999998377874666899847894588887677650-7178602557679999999706998666619999998 Q ss_pred --------------------HHCCCCCHHH-HCC----CCCCCCHHHHHHHHHCC-CCHH---HHHHHHHHHHCCCCEEE Q ss_conf --------------------1100120011-014----33352226666674222-3469---99999999818787089 Q gi|254780322|r 87 --------------------REVISCPLEE-IPS----ISQSVDLILSPLNLHII-NDTL---EMFSKINHMLKPGGMFL 137 (273) Q Consensus 87 --------------------~~~~~~d~e~-l~~----~~~sfDli~s~~~l~w~-~d~~---~~l~~~~r~LkpgG~~~ 137 (273) T Consensus 117 ~lEG~~~~~~e~ee~lR~~Ik~Vl~cDV~~~~pl~~~~~lp~~D~v~S~~cLE~ac~d~~~Y~~av~ni~~LLkpGG~Li 196 (261) T pfam01234 117 ELEGDRECWQEKEEKLRALVKRVLKCDVHQSPPLGAGVQLPPADCVVTIFCLEYACPDLEEYCRALRNLASLLKPGGHLV 196 (261) T ss_pred HHCCCCCCHHHHHHHHHHHHHEEEECCCCCCCCCCCCCCCCCCCEEEEEEEHHHHCCCHHHHHHHHHHHHHHCCCCCEEE T ss_conf 62267641578889999886448876556888888866678855884762255661999999999999986478884699 Q ss_pred EEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCC-CCCHHHHHHHHHHCCCCCEEEEE Q ss_conf 840686763347788998754542686642167-45999999999850898546773 Q gi|254780322|r 138 AAIPGIGTLHELRKALLKAETELTGGASPRVIP-FMDIKSAGTLMEKSGFISPIIDQ 193 (273) Q Consensus 138 ~s~~~~~~~~el~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~~ll~~agf~~~~~~~ 193 (273) T Consensus 197 l~gvl~~t~Y~vG--------------~~~F~~l~l~ee~v~~Al~~aG~~i~~~~~ 239 (261) T pfam01234 197 LGGVLEESWYMFG--------------EKKFSCLYLSKEVVEDALVDAGLDVEALQI 239 (261) T ss_pred EEEECCCCEEEEC--------------CEECCEEECCHHHHHHHHHHCCCEEEEEEE T ss_conf 9986177348878--------------986022522899999999977977899786 |
|
| >KOG3178 consensus | Back alignment and domain information |
|---|
Probab=98.46 E-value=1.3e-06 Score=57.95 Aligned_cols=158 Identities=16% Similarity=0.133 Sum_probs=93.9 Q ss_pred HHHHHHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHCCCCEEEEECCHHHHHHHHHH-------CCCCCHHHHCCC Q ss_conf 9999999999789863689870999859985899999862697089972001135775311-------001200110143 Q gi|254780322|r 28 LLDRVAKEIAFRLNMINQTFENALELHGITGIVGYTCMETKKIHRMIRAEISTEFSTLKRE-------VISCPLEEIPSI 100 (273) Q Consensus 28 l~~~~a~~l~~~l~~~~~~~~~vLdlGcGtG~~~~~l~~~~~~~~v~~~D~s~~~~~~~~~-------~~~~d~e~l~~~ 100 (273) T Consensus 160 l~~~~~~~il~~~~Gf~-~v~~avDvGgGiG~v~k~ll~~fp~--ik~infdlp~v~~~a~~~~~gV~~v~gdmfq~-~P 235 (342) T KOG3178 160 LSTLVMKKILEVYTGFK-GVNVAVDVGGGIGRVLKNLLSKYPH--IKGINFDLPFVLAAAPYLAPGVEHVAGDMFQD-TP 235 (342) T ss_pred HHHHHHHHHHHHHCCCC-CCCEEEECCCCHHHHHHHHHHHCCC--CCEEECCHHHHHHHHHHHCCCCCEECCCCCCC-CC T ss_conf 87888886420102655-6766887587476999999975887--72551478999852232067865123645345-88 Q ss_pred CCCCCHHHHHHHHHCCCC--HHHHHHHHHHHHCCCCEEEEEECCCCC--CHH-----HHHHHHHHHHHHHCCCCCCCCCC Q ss_conf 335222666667422234--699999999981878708984068676--334-----77889987545426866421674 Q gi|254780322|r 101 SQSVDLILSPLNLHIIND--TLEMFSKINHMLKPGGMFLAAIPGIGT--LHE-----LRKALLKAETELTGGASPRVIPF 171 (273) Q Consensus 101 ~~sfDli~s~~~l~w~~d--~~~~l~~~~r~LkpgG~~~~s~~~~~~--~~e-----l~~~~~~a~~~~~~~~~~~~~~~ 171 (273) T Consensus 236 ~~--daI~mkWiLhdwtDedcvkiLknC~~sL~~~GkIiv~E~V~p~e~~~dd~~s~v~~~~d~lm~~~~~~-----Gke 308 (342) T KOG3178 236 KG--DAIWMKWILHDWTDEDCVKILKNCKKSLPPGGKIIVVENVTPEEDKFDDIDSSVTRDMDLLMLTQTSG-----GKE 308 (342) T ss_pred CC--CEEEEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCEEEHHHHHHHHHHCC-----CEE T ss_conf 76--75998700056876889999999998589988899983568877776664321010467899987525-----601 Q ss_pred CCHHHHHHHHHHCCCCCEEEEEEEE Q ss_conf 5999999999850898546773136 Q gi|254780322|r 172 MDIKSAGTLMEKSGFISPIIDQDTY 196 (273) Q Consensus 172 ~~~~~~~~ll~~agf~~~~~~~~~~ 196 (273) T Consensus 309 rt~~e~q~l~~~~gF~~~~~~~~~~ 333 (342) T KOG3178 309 RTLKEFQALLPEEGFPVCMVALTAY 333 (342) T ss_pred CCHHHHHHCCHHHCCCEEEEEECCC T ss_conf 1499997114664683468973377 |
|
| >pfam11968 DUF3321 Protein of unknown function (DUF3321) | Back alignment and domain information |
|---|
Probab=98.05 E-value=2e-05 Score=50.93 Aligned_cols=153 Identities=17% Similarity=0.187 Sum_probs=95.0 Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCC------CCCEEEECCCCCHHHHHHHHHCCCCEEEEECCHHHHHHHH Q ss_conf 5776631746220689999999999789863689------8709998599858999998626970899720011357753 Q gi|254780322|r 13 NRLRSFRQKDFSVYFLLDRVAKEIAFRLNMINQT------FENALELHGITGIVGYTCMETKKIHRMIRAEISTEFSTLK 86 (273) Q Consensus 13 ~~~ra~~~~~~~~~~l~~~~a~~l~~~l~~~~~~------~~~vLdlGcGtG~~~~~l~~~~~~~~v~~~D~s~~~~~~~ 86 (273) T Consensus 15 ~YQ~AS~~GQ~~~R--GGdSSK~lv~wL~~~~~~~~~~~~~lr~LEVGALst~N---~~S~~~~~dv~rIDLnSq----~ 85 (220) T pfam11968 15 AYQLASKLGQSKDR--GGDSSKVLVEWLKPLLVRLKLGEGKLRALEVGALSTKN---ACSKSGLFDVTRIDLNSQ----E 85 (220) T ss_pred HHHHHHHHCCCCCC--CCCHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCC---HHCCCCEEEEEEEECCCC----C T ss_conf 99999983767778--99723899999777357722377763177554556421---222567477788525899----9 Q ss_pred HHCCCCCHHHHCC---CCCCCCHHHHHHHHHCCCCHH---HHHHHHHHHHCCCCE----EEEEECCCCCCHHHHHHHHHH Q ss_conf 1100120011014---333522266666742223469---999999998187870----898406867633477889987 Q gi|254780322|r 87 REVISCPLEEIPS---ISQSVDLILSPLNLHIINDTL---EMFSKINHMLKPGGM----FLAAIPGIGTLHELRKALLKA 156 (273) Q Consensus 87 ~~~~~~d~e~l~~---~~~sfDli~s~~~l~w~~d~~---~~l~~~~r~LkpgG~----~~~s~~~~~~~~el~~~~~~a 156 (273) T Consensus 86 p~I~qqDFmerPlP~~e~e~F~iISlSLVLNfVP~~~~RGeML~r~~~fL~~~~~~~~~~lFlVLP---lpCv------- 155 (220) T pfam11968 86 PGILQQDFMERPLPKDESEKFDIISLSLVLNFVPDPADRGEMLKRTTKFLRPPGPGSPPSLFLVLP---LPCV------- 155 (220) T ss_pred CCCHHHHHHHCCCCCCCCCCCCEEEEEEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEE---HHHH------- T ss_conf 871443244077888831141358887777416987888699999999717997666632688732---4564------- Q ss_pred HHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEEEE Q ss_conf 54542686642167459999999998508985467731 Q gi|254780322|r 157 ETELTGGASPRVIPFMDIKSAGTLMEKSGFISPIIDQD 194 (273) Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~ll~~agf~~~~~~~~ 194 (273) T Consensus 156 ----------~NSRY~~~~~l~~im~slGf~~~~~k~t 183 (220) T pfam11968 156 ----------TNSRYMDEERLQAIMSSLGFVLVKSKET 183 (220) T ss_pred ----------HCCCCCCHHHHHHHHHHCCCEEEEEECC T ss_conf ----------0440019999999999679558876426 |
This family is conserved in fungi and is annotated as being a nucleolar protein. |
| >KOG2798 consensus | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.00019 Score=45.33 Aligned_cols=150 Identities=16% Similarity=0.130 Sum_probs=92.1 Q ss_pred HHHHHHHHHHHHHHH--HCCCCCCCEEEECCCCCHHHHHHHHHCCCCEEEEECCHHHHHHHHHH---------------C Q ss_conf 899999999997898--63689870999859985899999862697089972001135775311---------------0 Q gi|254780322|r 27 FLLDRVAKEIAFRLN--MINQTFENALELHGITGIVGYTCMETKKIHRMIRAEISTEFSTLKRE---------------V 89 (273) Q Consensus 27 ~l~~~~a~~l~~~l~--~~~~~~~~vLdlGcGtG~~~~~l~~~~~~~~v~~~D~s~~~~~~~~~---------------~ 89 (273) T Consensus 129 ~~ykpii~~l~~lfp~~~~~r~ki~iLvPGaGlGRLa~dla~~G~~~q--GNEfSy~Mli~S~FiLN~~~~~nq~~IYPf 206 (369) T KOG2798 129 QLYKPIIEELNSLFPSRGKERTKIRILVPGAGLGRLAYDLACLGFKCQ--GNEFSYFMLICSSFILNYCKQENQFTIYPF 206 (369) T ss_pred HHHHHHHHHHHHHCCCCCCCCCCCEEEECCCCCHHHHHHHHHHCCCCC--CCHHHHHHHHHHHHHHHHHCCCCCEEEEEE T ss_conf 344147999874189866655586288148871167899887433334--307899999999999875426784799742 Q ss_pred ------------------------------------CCCCHHH---HCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHH Q ss_conf ------------------------------------0120011---0143335222666667422234699999999981 Q gi|254780322|r 90 ------------------------------------ISCPLEE---IPSISQSVDLILSPLNLHIINDTLEMFSKINHML 130 (273) Q Consensus 90 ------------------------------------~~~d~e~---l~~~~~sfDli~s~~~l~w~~d~~~~l~~~~r~L 130 (273) T Consensus 207 Ih~~sn~~~~dDQlrpi~~PD~~p~~~~~~~~~fsicaGDF~evy~~s~~~~~~d~VvTcfFIDTa~NileYi~tI~~iL 286 (369) T KOG2798 207 IHQYSNSLSRDDQLRPISIPDIHPASSNGNTGSFSICAGDFLEVYGTSSGAGSYDVVVTCFFIDTAHNILEYIDTIYKIL 286 (369) T ss_pred EECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCEEEEEEEEECHHHHHHHHHHHHHHC T ss_conf 12014555301343665676556443478998742215650577267677775554899987524377999999999851 Q ss_pred CCCCEEEEEECCCC--CCHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEE Q ss_conf 87870898406867--633477889987545426866421674599999999985089854677 Q gi|254780322|r 131 KPGGMFLAAIPGIG--TLHELRKALLKAETELTGGASPRVIPFMDIKSAGTLMEKSGFISPIID 192 (273) Q Consensus 131 kpgG~~~~s~~~~~--~~~el~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~agf~~~~~~ 192 (273) T Consensus 287 k~GGvWi--NlGPLlYHF~d~------------~g~~~~~siEls~edl~~v~~~~GF~~~ke~ 336 (369) T KOG2798 287 KPGGVWI--NLGPLLYHFEDT------------HGVENEMSIELSLEDLKRVASHRGFEVEKER 336 (369) T ss_pred CCCCEEE--ECCCEEEECCCC------------CCCCCCCCCCCCHHHHHHHHHHCCCEEEEEE T ss_conf 5783899--325625513678------------8876553102469999999984582787740 |
|
| >PRK13255 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.00017 Score=45.49 Aligned_cols=143 Identities=11% Similarity=0.060 Sum_probs=92.1 Q ss_pred HHHHHHHHHHHHCC-CCCCCEEEECCCCCHHHHHHHHHCCCCEEEEECCHHHHHHH-----------------------H Q ss_conf 99999997898636-89870999859985899999862697089972001135775-----------------------3 Q gi|254780322|r 31 RVAKEIAFRLNMIN-QTFENALELHGITGIVGYTCMETKKIHRMIRAEISTEFSTL-----------------------K 86 (273) Q Consensus 31 ~~a~~l~~~l~~~~-~~~~~vLdlGcGtG~~~~~l~~~~~~~~v~~~D~s~~~~~~-----------------------~ 86 (273) T Consensus 21 ~vnp~L~~~~~~L~~~~~~rVlVPlCGKs~Dm~wLa~~G~--~VvGvEls~~Av~~ff~e~~l~~~~~~~~~~~~y~~~~ 98 (218) T PRK13255 21 EVNPLLQKYWPALALPAGSRVLVPLCGKSLDMLWLAEQGH--EVLGVELSELAVEQFFAENGLTPQVRQSGEFEHYQAGE 98 (218) T ss_pred CCCHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHCCC--EEEEEECHHHHHHHHHHHCCCCCCCCCCCCEEEEECCC T ss_conf 9997999999960878898699948986776999984897--26998352999999999738986301367603775388 Q ss_pred HHCCCCCHHHHCCC-CCCCCHHHHHHHHHCCCCH--HHHHHHHHHHHCCCCEEE-EEECCCCCCHHHHHHHHHHHHHHHC Q ss_conf 11001200110143-3352226666674222346--999999999818787089-8406867633477889987545426 Q gi|254780322|r 87 REVISCPLEEIPSI-SQSVDLILSPLNLHIINDT--LEMFSKINHMLKPGGMFL-AAIPGIGTLHELRKALLKAETELTG 162 (273) Q Consensus 87 ~~~~~~d~e~l~~~-~~sfDli~s~~~l~w~~d~--~~~l~~~~r~LkpgG~~~-~s~~~~~~~~el~~~~~~a~~~~~~ 162 (273) T Consensus 99 i~i~~gDfF~L~~~~~g~~DaIyDRaal~ALpp~~R~~Y~~~l~~ll~~g~~~LLitl~Y~q~~-------------~~- 164 (218) T PRK13255 99 ISLYCGDFFALTAADLADVDAVYDRAALIALPEEMRERYVQQLAALLPAGCRGLLVTLDYPQEE-------------LA- 164 (218) T ss_pred EEEEECCCCCCCHHHCCCCCEEEECCCEECCCHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCC-------------CC- T ss_conf 2799664202786354774889975380128989999999999986499874899998627655-------------68- Q ss_pred CCCCCCCCCC-CHHHHHHHHHHCCCCCEEEEEEE Q ss_conf 8664216745-99999999985089854677313 Q gi|254780322|r 163 GASPRVIPFM-DIKSAGTLMEKSGFISPIIDQDT 195 (273) Q Consensus 163 ~~~~~~~~~~-~~~~~~~ll~~agf~~~~~~~~~ 195 (273) T Consensus 165 -----GPPFsv~~~Ev~~ly~-~~~~i~~L~~~~ 192 (218) T PRK13255 165 -----GPPFSVSDEEVEALFA-GDFEIELLERQD 192 (218) T ss_pred -----CCCCCCCHHHHHHHHC-CCCEEEEEEEEC T ss_conf -----9699899999999843-786799976313 |
|
| >COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.0021 Score=39.19 Aligned_cols=152 Identities=13% Similarity=0.110 Sum_probs=89.8 Q ss_pred HHHHHHHHHHHHHCCC--CCCCEEEECCCCCHHHHHHHHHCCCCEEEEECCHHHHHHHHHH----CCC---CCHHHH--- Q ss_conf 9999999978986368--9870999859985899999862697089972001135775311----001---200110--- Q gi|254780322|r 30 DRVAKEIAFRLNMINQ--TFENALELHGITGIVGYTCMETKKIHRMIRAEISTEFSTLKRE----VIS---CPLEEI--- 97 (273) Q Consensus 30 ~~~a~~l~~~l~~~~~--~~~~vLdlGcGtG~~~~~l~~~~~~~~v~~~D~s~~~~~~~~~----~~~---~d~e~l--- 97 (273) T Consensus 61 SRG~~KL~~ale~F~l~~k~kv~LDiGsSTGGFTd~lLq~gA-k~VyavDVG~~Ql~~kLR~d~rV~~~E~tN~r~l~~~ 139 (245) T COG1189 61 SRGGLKLEKALEEFELDVKGKVVLDIGSSTGGFTDVLLQRGA-KHVYAVDVGYGQLHWKLRNDPRVIVLERTNVRYLTPE 139 (245) T ss_pred CCHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHCCC-CEEEEEECCCCCCCHHHHCCCCEEEEECCCHHHCCHH T ss_conf 618999999999648688997899826787629999987587-4799997037743786735984799852783118987 Q ss_pred CCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCC-CCCCCHHH Q ss_conf 14333522266666742223469999999998187870898406867633477889987545426866421-67459999 Q gi|254780322|r 98 PSISQSVDLILSPLNLHIINDTLEMFSKINHMLKPGGMFLAAIPGIGTLHELRKALLKAETELTGGASPRV-IPFMDIKS 176 (273) Q Consensus 98 ~~~~~sfDli~s~~~l~w~~d~~~~l~~~~r~LkpgG~~~~s~~~~~~~~el~~~~~~a~~~~~~~~~~~~-~~~~~~~~ 176 (273) T Consensus 140 ~~~~-~~d~~v~DvSFISL---~~iLp~l~~l~~~~~~~v~Lv--KPQFEagr~----~v~--kkGvv~d~~~~~~v~~~ 207 (245) T COG1189 140 DFTE-KPDLIVIDVSFISL---KLILPALLLLLKDGGDLVLLV--KPQFEAGRE----QVG--KKGVVRDPKLHAEVLSK 207 (245) T ss_pred HCCC-CCCEEEEEEEHHHH---HHHHHHHHHHCCCCCEEEEEE--CCHHHHHHH----HCC--CCCEECCCCHHHHHHHH T ss_conf 8176-77847996423319---988899997427886389973--655554043----227--68634480158999999 Q ss_pred HHHHHHHCCCCCEEEEEE Q ss_conf 999998508985467731 Q gi|254780322|r 177 AGTLMEKSGFISPIIDQD 194 (273) Q Consensus 177 ~~~ll~~agf~~~~~~~~ 194 (273) T Consensus 208 i~~~~~~~g~~~~gl~~S 225 (245) T COG1189 208 IENFAKELGFQVKGLIKS 225 (245) T ss_pred HHHHHHHCCCEEEEEECC T ss_conf 998886459578655726 |
|
| >TIGR02817 adh_fam_1 zinc-binding alcohol dehydrogenase family protein; InterPro: IPR014182 Members of this entry form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases | Back alignment and domain information |
|---|
Probab=96.45 E-value=0.063 Score=30.57 Aligned_cols=148 Identities=17% Similarity=0.146 Sum_probs=98.2 Q ss_pred HHHHHHHHHHHHH-HHHHHC---CCCCCCEEEECCCCCHHH--HHHHHHCCCCEEEEECCHHHHHHHHHH---------- Q ss_conf 0689999999999-789863---689870999859985899--999862697089972001135775311---------- Q gi|254780322|r 25 VYFLLDRVAKEIA-FRLNMI---NQTFENALELHGITGIVG--YTCMETKKIHRMIRAEISTEFSTLKRE---------- 88 (273) Q Consensus 25 ~~~l~~~~a~~l~-~~l~~~---~~~~~~vLdlGcGtG~~~--~~l~~~~~~~~v~~~D~s~~~~~~~~~---------- 88 (273) T Consensus 125 ALPLT~ITAWElLFDRL~~~~~~~~~~~~lLIiGgAGGVGSI~iQLAR~LT~ltVIaTASRpEs~~Wv~~LGAH~VIDHs 204 (338) T TIGR02817 125 ALPLTSITAWELLFDRLGINDPVAGAKRALLIIGGAGGVGSILIQLARQLTGLTVIATASRPESQEWVLELGAHHVIDHS 204 (338) T ss_pred HCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHCCCCEEECCC T ss_conf 31024899999988661589768888874789738851789999999985496499972857899999973991886588 Q ss_pred -CCCCCHHHHCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHCCCCEEE-EEECCCCCCHHHHH-HHHHHHHHHHCCCC Q ss_conf -0012001101433352226666674222346999999999818787089-84068676334778-89987545426866 Q gi|254780322|r 89 -VISCPLEEIPSISQSVDLILSPLNLHIINDTLEMFSKINHMLKPGGMFL-AAIPGIGTLHELRK-ALLKAETELTGGAS 165 (273) Q Consensus 89 -~~~~d~e~l~~~~~sfDli~s~~~l~w~~d~~~~l~~~~r~LkpgG~~~-~s~~~~~~~~el~~-~~~~a~~~~~~~~~ 165 (273) T Consensus 205 kPL~~ql~~L~l--~~v~~V~SlT~------TDqH~~~ive~laPQGrlaLIDDP~~LD~~~lK~KSiSlHWE~MfT--- 273 (338) T TIGR02817 205 KPLKAQLEKLGL--EAVSYVFSLTH------TDQHFKEIVELLAPQGRLALIDDPAELDVSPLKRKSISLHWEFMFT--- 273 (338) T ss_pred CCHHHHHHHHCC--CCCCEEECCCH------HHHHHHHHHHHHCCCCCEECCCCCCCCCHHHHCHHHHHHHHHHHHC--- T ss_conf 436899998288--99855751660------7899999999856787400002870016313210130211245541--- Q ss_pred CCCCCCCCHHHHHHHHHH Q ss_conf 421674599999999985 Q gi|254780322|r 166 PRVIPFMDIKSAGTLMEK 183 (273) Q Consensus 166 ~~~~~~~~~~~~~~ll~~ 183 (273) T Consensus 274 RS~f~T~Dmi~QH~LLn~ 291 (338) T TIGR02817 274 RSMFQTEDMIEQHELLNR 291 (338) T ss_pred CCCCCCHHHHHHHHHHHH T ss_conf 776674669999999999 |
Some current members of this entry carry designations as putative alginate lyase, however none have been characterised as such.. |
| >PRK13256 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=95.74 E-value=0.06 Score=30.68 Aligned_cols=146 Identities=10% Similarity=0.031 Sum_probs=96.3 Q ss_pred HHHHHHHHHHHHHHHHCC-CCCCCEEEECCCCCHHHHHHHHHCCCCEEEEECCHHHHHHH----H--------------- Q ss_conf 899999999997898636-89870999859985899999862697089972001135775----3--------------- Q gi|254780322|r 27 FLLDRVAKEIAFRLNMIN-QTFENALELHGITGIVGYTCMETKKIHRMIRAEISTEFSTL----K--------------- 86 (273) Q Consensus 27 ~l~~~~a~~l~~~l~~~~-~~~~~vLdlGcGtG~~~~~l~~~~~~~~v~~~D~s~~~~~~----~--------------- 86 (273) T Consensus 23 FH~~~vnp~L~k~~~~L~~~~~~rVfVPLCGKSlDm~WLa~qG~--~VvGvELse~Av~~FF~E~~l~~~v~~~~~~~~y 100 (226) T PRK13256 23 FCQESPNEFLVKHFSKLNINDSSVCLIPMCGCSIDMLFFLSKGV--KVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLY 100 (226) T ss_pred CCCCCCCHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHCCC--EEEEEEHHHHHHHHHHHHCCCCCEEECCCCCEEE T ss_conf 66454688899999974889998699967887898999997898--2564310189999999976998455137881288 Q ss_pred ----HHCCCCCHHHHCC---CCCCCCHHHHHHHHHCCCCH--HHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHH Q ss_conf ----1100120011014---33352226666674222346--99999999981878708984068676334778899875 Q gi|254780322|r 87 ----REVISCPLEEIPS---ISQSVDLILSPLNLHIINDT--LEMFSKINHMLKPGGMFLAAIPGIGTLHELRKALLKAE 157 (273) Q Consensus 87 ----~~~~~~d~e~l~~---~~~sfDli~s~~~l~w~~d~--~~~l~~~~r~LkpgG~~~~s~~~~~~~~el~~~~~~a~ 157 (273) T Consensus 101 ~~~~I~i~~GD~F~L~~~~~~lg~~daiYDRAALVALP~~mR~~Ya~~L~~ll~~~~~~LLitl~Y~q--~--------- 169 (226) T PRK13256 101 KGDDIEIYVADIFNLPKIANNLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQILLLVMEHDK--K--------- 169 (226) T ss_pred ECCCEEEEECCCCCCCCHHCCCCCCCEEEEEHHHHCCCHHHHHHHHHHHHHHCCCCCCEEEEEEECCC--C--------- T ss_conf 51887699636215862011576403697402253199899999999999865877709999986475--4--------- Q ss_pred HHHHCCCCCCCCCC-CCHHHHHHHHHHCCCCCEEEEEE Q ss_conf 45426866421674-59999999998508985467731 Q gi|254780322|r 158 TELTGGASPRVIPF-MDIKSAGTLMEKSGFISPIIDQD 194 (273) Q Consensus 158 ~~~~~~~~~~~~~~-~~~~~~~~ll~~agf~~~~~~~~ 194 (273) T Consensus 170 --~-~g-----PPFsV~~~EV~~lf~-~~~~ielLe~~ 198 (226) T PRK13256 170 --S-QT-----PPYSVTQAELIKNFS-AKIKFELIDSK 198 (226) T ss_pred --C-CC-----CCCCCCHHHHHHHHC-CCCEEEEEECC T ss_conf --5-79-----499799999999848-98538995236 |
|
| >COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=9.1e-29 Score=187.14 Aligned_cols=148 Identities=18% Similarity=0.179 Sum_probs=124.4 Q ss_pred CCHHHHHHHHHHHHCCCCCCH---H-HHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHCCCCEEEEECCHH Q ss_conf 018999985776631746220---6-899999999997898636898709998599858999998626970899720011 Q gi|254780322|r 5 FDMQLINRNRLRSFRQKDFSV---Y-FLLDRVAKEIAFRLNMINQTFENALELHGITGIVGYTCMETKKIHRMIRAEIST 80 (273) Q Consensus 5 fd~~~i~~~~~ra~~~~~~~~---~-~l~~~~a~~l~~~l~~~~~~~~~vLdlGcGtG~~~~~l~~~~~~~~v~~~D~s~ 80 (273) T Consensus 8 ~k~~~v~~vF~~ia~~YD~~n~~~S~g~~~~Wr~~~i~~~~~-~-~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~ 85 (238) T COG2226 8 EKQEKVQKVFDKVAKKYDLMNDLMSFGLHRLWRRALISLLGI-K-PGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISE 85 (238) T ss_pred CCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCC-C-CCCEEEEECCCCCHHHHHHHHHCCCCEEEEEECCH T ss_conf 448889999876577887542120374039999999986078-9-99879996687319999999965884499997999 Q ss_pred HHHHHHHH-----------CCCCCHHHHCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCHHH Q ss_conf 35775311-----------0012001101433352226666674222346999999999818787089840686763347 Q gi|254780322|r 81 EFSTLKRE-----------VISCPLEEIPSISQSVDLILSPLNLHIINDTLEMFSKINHMLKPGGMFLAAIPGIGTLHEL 149 (273) Q Consensus 81 ~~~~~~~~-----------~~~~d~e~l~~~~~sfDli~s~~~l~w~~d~~~~l~~~~r~LkpgG~~~~s~~~~~~~~el 149 (273) T Consensus 86 ~ML~~a~~k~~~~~~~~i~fv~~dAe~LPf~D~sFD~vt~~fglrnv~d~~~aL~E~~RVlKpgG~~~vle~~~p~~~~~ 165 (238) T COG2226 86 SMLEVAREKLKKKGVQNVEFVVGDAENLPFPDNSFDAVTISFGLRNVTDIDKALKEMYRVLKPGGRLLVLEFSKPDNPVL 165 (238) T ss_pred HHHHHHHHHHHCCCCCCEEEEEECHHHCCCCCCCCCEEEEEEHHHCCCCHHHHHHHHHHHHCCCEEEEEEECCCCCCCHH T ss_conf 99999998743247663279970565498888765889865123527878999999987626874999987689986016 Q ss_pred HHHHH Q ss_conf 78899 Q gi|254780322|r 150 RKALL 154 (273) Q Consensus 150 ~~~~~ 154 (273) T Consensus 166 ~~~~~ 170 (238) T COG2226 166 RKAYI 170 (238) T ss_pred HHHHH T ss_conf 99999 |
|
| >PRK05785 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=7e-23 Score=152.79 Aligned_cols=148 Identities=14% Similarity=0.139 Sum_probs=114.6 Q ss_pred CCCCCCHHHHHHHHHHHHCCCCCCHHH----HHHHHHHHHHHHHHHCC-CCCCCEEEECCCCCHHHHHHHHHCCCCEEEE Q ss_conf 972001899998577663174622068----99999999997898636-8987099985998589999986269708997 Q gi|254780322|r 1 MNILFDMQLINRNRLRSFRQKDFSVYF----LLDRVAKEIAFRLNMIN-QTFENALELHGITGIVGYTCMETKKIHRMIR 75 (273) Q Consensus 1 m~~~fd~~~i~~~~~ra~~~~~~~~~~----l~~~~a~~l~~~l~~~~-~~~~~vLdlGcGtG~~~~~l~~~~~~~~v~~ 75 (273) T Consensus 1 ~~~~~~~e~V~~mF~~IA~~YD~~N~~mSlG~~~~Wrr~~v~~~~~~~~~~~~~vLDva~GTGd~a~~l~~~---~~v~~ 77 (225) T PRK05785 1 MGLGASWEELQEAYNKIPKAYERANRLITFGNVDRWRAEAVKLIYKYDGKSPLKVLDAGAGPGNMAYHLRKI---RYVVA 77 (225) T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHCC---CEEEE T ss_conf 998888899999999887789988889828970999999999987306788882899568843999996347---86999 Q ss_pred ECCHHHHHHHHH---HCCCCCHHHHCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHH Q ss_conf 200113577531---1001200110143335222666667422234699999999981878708984068676334778 Q gi|254780322|r 76 AEISTEFSTLKR---EVISCPLEEIPSISQSVDLILSPLNLHIINDTLEMFSKINHMLKPGGMFLAAIPGIGTLHELRK 151 (273) Q Consensus 76 ~D~s~~~~~~~~---~~~~~d~e~l~~~~~sfDli~s~~~l~w~~d~~~~l~~~~r~LkpgG~~~~s~~~~~~~~el~~ 151 (273) T Consensus 78 ~D~s~~ML~~a~~~~~~v~~~ae~LPf~d~sFD~vt~~FglRN~~d~~~al~E~~RVlk~~~iLe~s~P~~~~~r~~y~ 156 (225) T PRK05785 78 LDYTEEMLRLNLVADDKVVGSFEAMPFRDKSFDLVMSGYALHASDDIEKAVAEFSRVSRYQVVVAIGKPDNVVARKLLS 156 (225) T ss_pred EECCHHHHHHHHHCCCCEEEHHHHCCCCCCCEEEEEEEEEEECCCCHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHH T ss_conf 9889999998764321137318539999882527763443004888999999999730977999968998478999999 |
|
| >KOG3010 consensus | Back alignment and domain information |
|---|
Probab=99.68 E-value=8.3e-15 Score=105.70 Aligned_cols=138 Identities=15% Similarity=0.186 Sum_probs=94.4 Q ss_pred CCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHCCCCEEEEECCHH Q ss_conf 97200189999857766317462206899999999997898636898709998599858999998626970899720011 Q gi|254780322|r 1 MNILFDMQLINRNRLRSFRQKDFSVYFLLDRVAKEIAFRLNMINQTFENALELHGITGIVGYTCMETKKIHRMIRAEIST 80 (273) Q Consensus 1 m~~~fd~~~i~~~~~ra~~~~~~~~~~l~~~~a~~l~~~l~~~~~~~~~vLdlGcGtG~~~~~l~~~~~~~~v~~~D~s~ 80 (273) T Consensus 1 ~~~~~~~--~a~~Y~~ARP~YP--tdw-~~~--------ia~~~~~h~~a~DvG~G~Gqa~~~iae~~--k~VIatD~s~ 65 (261) T KOG3010 1 MAKLFDK--QAADYLNARPSYP--TDW-FKK--------IASRTEGHRLAWDVGTGNGQAARGIAEHY--KEVIATDVSE 65 (261) T ss_pred CCCCCCC--CHHHHHHCCCCCC--HHH-HHH--------HHHHCCCCCEEEEECCCCCCCHHHHHHHH--HHHEEECCCH T ss_conf 9530020--1888862588986--899-999--------98428886458884568871147888754--3431306879 Q ss_pred HHHHHHHHC------------CCCCHHHHCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHCCCC-EEEEEECCCC--C Q ss_conf 357753110------------012001101433352226666674222346999999999818787-0898406867--6 Q gi|254780322|r 81 EFSTLKREV------------ISCPLEEIPSISQSVDLILSPLNLHIINDTLEMFSKINHMLKPGG-MFLAAIPGIG--T 145 (273) Q Consensus 81 ~~~~~~~~~------------~~~d~e~l~~~~~sfDli~s~~~l~w~~d~~~~l~~~~r~LkpgG-~~~~s~~~~~--~ 145 (273) T Consensus 66 ~mL~~a~k~~~~~y~~t~~~ms~~~~v~L~g~e~SVDlI~~Aqa~HWFd-le~fy~~~~rvLRk~Gg~iavW~Y~dd~v~ 144 (261) T KOG3010 66 AMLKVAKKHPPVTYCHTPSTMSSDEMVDLLGGEESVDLITAAQAVHWFD-LERFYKEAYRVLRKDGGLIAVWNYNDDFVD 144 (261) T ss_pred HHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEHHHHHHHHHC-HHHHHHHHHHHCCCCCCEEEEEECCCCCCC T ss_conf 9999861189862045785345665653237876412110545677634-299999999980778977999972477767 Q ss_pred CHHHHHHHH Q ss_conf 334778899 Q gi|254780322|r 146 LHELRKALL 154 (273) Q Consensus 146 ~~el~~~~~ 154 (273) T Consensus 145 ~pE~dsv~~ 153 (261) T KOG3010 145 WPEFDSVML 153 (261) T ss_pred CHHHHHHHH T ss_conf 788889999 |
|
| >KOG1541 consensus | Back alignment and domain information |
|---|
Probab=99.60 E-value=2.2e-15 Score=109.11 Aligned_cols=117 Identities=18% Similarity=0.231 Sum_probs=96.2 Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHCCCCEEEEECCHHHHHHHHHH------CCCCCH-HHHC Q ss_conf 689999999999789863689870999859985899999862697089972001135775311------001200-1101 Q gi|254780322|r 26 YFLLDRVAKEIAFRLNMINQTFENALELHGITGIVGYTCMETKKIHRMIRAEISTEFSTLKRE------VISCPL-EEIP 98 (273) Q Consensus 26 ~~l~~~~a~~l~~~l~~~~~~~~~vLdlGcGtG~~~~~l~~~~~~~~v~~~D~s~~~~~~~~~------~~~~d~-e~l~ 98 (273) T Consensus 30 ~~IQ~em~eRaLELLalp~~~~~~iLDIGCGsGLSg~vL~~~G--h~wiGvDiSpsML~~a~~~e~egdlil~DMG~Glp 107 (270) T KOG1541 30 VLIQAEMAERALELLALPGPKSGLILDIGCGSGLSGSVLSDSG--HQWIGVDISPSMLEQAVERELEGDLILCDMGEGLP 107 (270) T ss_pred EEEHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCHHEECCCC--CEEEEECCCHHHHHHHHHHHHHCCEEEEECCCCCC T ss_conf 3221778887898760899887179983457774320021689--55886228989999999766404766312478878 Q ss_pred CCCCCCCHHHHHHHHHCC-------CCH----HHHHHHHHHHHCCCCEEEEEECCCC Q ss_conf 433352226666674222-------346----9999999998187870898406867 Q gi|254780322|r 99 SISQSVDLILSPLNLHII-------NDT----LEMFSKINHMLKPGGMFLAAIPGIG 144 (273) Q Consensus 99 ~~~~sfDli~s~~~l~w~-------~d~----~~~l~~~~r~LkpgG~~~~s~~~~~ 144 (273) T Consensus 108 frpGtFDg~ISISAvQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~QfYpen 164 (270) T KOG1541 108 FRPGTFDGVISISAVQWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQFYPEN 164 (270) T ss_pred CCCCCCCEEEEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCC T ss_conf 899741247886203210146844467389999986645321036861588852454 |
|
| >pfam05175 MTS Methyltransferase small domain | Back alignment and domain information |
|---|
Probab=99.51 E-value=4.2e-14 Score=101.61 Aligned_cols=109 Identities=18% Similarity=0.157 Sum_probs=82.2 Q ss_pred HHHHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHCCCCEEEEECCHHHHHHHHHH-----------CCCCCHHHHC Q ss_conf 99999999789863689870999859985899999862697089972001135775311-----------0012001101 Q gi|254780322|r 30 DRVAKEIAFRLNMINQTFENALELHGITGIVGYTCMETKKIHRMIRAEISTEFSTLKRE-----------VISCPLEEIP 98 (273) Q Consensus 30 ~~~a~~l~~~l~~~~~~~~~vLdlGcGtG~~~~~l~~~~~~~~v~~~D~s~~~~~~~~~-----------~~~~d~e~l~ 98 (273) T Consensus 17 D~Gt~lLl~~l~~--~~~g~vLDlGcG~G~i~~~la~~~p~~~v~~vDi~~~Al~~a~~N~~~n~l~~v~v~~~D~~~-~ 93 (170) T pfam05175 17 DIGSRLLLSHLPK--PLGGKVLDLGCGYGVLGAALAKRSPDLEVTMVDINARALESARANLAANGLENGEVFWSDLYS-A 93 (170) T ss_pred CHHHHHHHHCCCC--CCCCCEEEECCCCCHHHHHHHHHCCCCEEEECHHHHHHHHHHHHHHHHHCCCEEEEEECCCCC-C T ss_conf 9899999970897--789949997764829899999978986798515449999999999998099848999744666-5 Q ss_pred CCCCCCCHHHHHHHHHCCCC-----HHHHHHHHHHHHCCCCEEEEEEC Q ss_conf 43335222666667422234-----69999999998187870898406 Q gi|254780322|r 99 SISQSVDLILSPLNLHIIND-----TLEMFSKINHMLKPGGMFLAAIP 141 (273) Q Consensus 99 ~~~~sfDli~s~~~l~w~~d-----~~~~l~~~~r~LkpgG~~~~s~~ 141 (273) T Consensus 94 ~~~~~fD~IvsNPP~h~g~~~~~~~~~~~i~~A~~~L~pgG~l~~V~n 141 (170) T pfam05175 94 VEPGKFDLIISNPPFHAGKATDYDVAQRFIAGAARHLKPGGELWIVAN 141 (170) T ss_pred CCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEE T ss_conf 778866089989772114203289999999999996164979999998 |
This domain is found in ribosomal RNA small subunit methyltransferase C as well as other methyltransferases . |
| >TIGR03534 RF_mod_HemK protein-(glutamine-N5) methyltransferase, release factor-specific | Back alignment and domain information |
|---|
Probab=99.23 E-value=4.7e-11 Score=83.81 Aligned_cols=113 Identities=20% Similarity=0.253 Sum_probs=80.0 Q ss_pred HHHHHHHHHHHHHH-HHCCCCCCCEEEECCCCCHHHHHHHHHCCCCEEEEECCHHHHHHHHHH-----------CCCCCH Q ss_conf 89999999999789-863689870999859985899999862697089972001135775311-----------001200 Q gi|254780322|r 27 FLLDRVAKEIAFRL-NMINQTFENALELHGITGIVGYTCMETKKIHRMIRAEISTEFSTLKRE-----------VISCPL 94 (273) Q Consensus 27 ~l~~~~a~~l~~~l-~~~~~~~~~vLdlGcGtG~~~~~l~~~~~~~~v~~~D~s~~~~~~~~~-----------~~~~d~ 94 (273) T Consensus 67 LIPRpETE~Lve~~l~~~~~~~~~ilDlgtGSG~I~i~la~~~~~~~v~~~Dis~~Al~~A~~N~~~~~~~~v~~~~~d~ 146 (251) T TIGR03534 67 LIPRPDTEELVEAALERLKKGPLKVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAKRLGLENVRFLKSDW 146 (251) T ss_pred EEECCCHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEEEECCH T ss_conf 86488339999999997314898699955671699999999679978999989879999999999980998268651314 Q ss_pred HHHCCCCCCCCHHHHHH---------HHHC-C----------------CCHHHHHHHHHHHHCCCCEEEEEE Q ss_conf 11014333522266666---------7422-2----------------346999999999818787089840 Q gi|254780322|r 95 EEIPSISQSVDLILSPL---------NLHI-I----------------NDTLEMFSKINHMLKPGGMFLAAI 140 (273) Q Consensus 95 e~l~~~~~sfDli~s~~---------~l~w-~----------------~d~~~~l~~~~r~LkpgG~~~~s~ 140 (273) T Consensus 147 ~~-~~~~~~fDlIvsNPPYI~~~e~~~l~~eV~~~EP~~AL~gg~dGl~~~~~ii~~a~~~L~~~G~l~~Ei 217 (251) T TIGR03534 147 FE-PLPGGKFDLIVSNPPYIPEADIHLLDPEVRFHEPKLALFAGEDGLDFYRRIIAQAPRYLKPGGWLLLEI 217 (251) T ss_pred HH-CCCCCCCCEEEECCCCCCHHHHHHCCCHHCCCCHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEE T ss_conf 32-156898668997899887456663286010267299971798469999999999998536798899996 |
Members of this protein family are HemK, a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. However, the family is diverse enough that even many members of the seed alignment do not score above the seed alignment, which was set high enough to exclude all instances of PrmB. |
| >PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=9.7e-11 Score=81.99 Aligned_cols=116 Identities=14% Similarity=0.141 Sum_probs=82.0 Q ss_pred HHHH-HHHHHHHHHHHHC-C-CCCCCEEEECCCCCHHHHHHHHHCCCCEEEEECCHHHHHHHHHHC------------CC Q ss_conf 8999-9999999789863-6-898709998599858999998626970899720011357753110------------01 Q gi|254780322|r 27 FLLD-RVAKEIAFRLNMI-N-QTFENALELHGITGIVGYTCMETKKIHRMIRAEISTEFSTLKREV------------IS 91 (273) Q Consensus 27 ~l~~-~~a~~l~~~l~~~-~-~~~~~vLdlGcGtG~~~~~l~~~~~~~~v~~~D~s~~~~~~~~~~------------~~ 91 (273) T Consensus 111 LIPRpp~~ELi~~~l~~~~~~~~~~rilDlGtGSG~Iaisla~~~p~~~v~a~Dis~~AL~vA~~N~~~~~l~~rv~~~~ 190 (307) T PRK11805 111 LVPRSPIAELIEDGFAPWLEDEQPTRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGLEDRVTLIQ 190 (307) T ss_pred ECCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHCCCCCEEEEE T ss_conf 15899849999999999733578872777427827999999987899889998589999999999999838877389980 Q ss_pred CCHHHHCCCCCCCCHHHHHHHH------HCCC-----CH--------------HHHHHHHHHHHCCCCEEEEEECCC Q ss_conf 2001101433352226666674------2223-----46--------------999999999818787089840686 Q gi|254780322|r 92 CPLEEIPSISQSVDLILSPLNL------HIIN-----DT--------------LEMFSKINHMLKPGGMFLAAIPGI 143 (273) Q Consensus 92 ~d~e~l~~~~~sfDli~s~~~l------~w~~-----d~--------------~~~l~~~~r~LkpgG~~~~s~~~~ 143 (273) T Consensus 191 ~D~~~-~l~~~~fDlIvSNPPYI~~~~~~~L~~ev~~EP~~AL~gG~DGLd~~r~i~~~A~~~L~pgG~L~~EiG~~ 266 (307) T PRK11805 191 SDLFA-ALPGRRYDLIVSNPPYVDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAADYLTEDGVLVCEVGNS 266 (307) T ss_pred CCHHH-CCCCCCCCEEEECCCCCCHHHHHHCCHHHCCCCHHHHCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCC T ss_conf 40221-26887507799679978856563397753158788876892488999999998897447696899997978 |
|
| >TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.1e-10 Score=81.77 Aligned_cols=117 Identities=14% Similarity=0.137 Sum_probs=80.1 Q ss_pred HHHH-HHHHHHHHHHHHC--CCCCCCEEEECCCCCHHHHHHHHHCCCCEEEEECCHHHHHHHHHHC------------CC Q ss_conf 8999-9999999789863--6898709998599858999998626970899720011357753110------------01 Q gi|254780322|r 27 FLLD-RVAKEIAFRLNMI--NQTFENALELHGITGIVGYTCMETKKIHRMIRAEISTEFSTLKREV------------IS 91 (273) Q Consensus 27 ~l~~-~~a~~l~~~l~~~--~~~~~~vLdlGcGtG~~~~~l~~~~~~~~v~~~D~s~~~~~~~~~~------------~~ 91 (273) T Consensus 99 LIPR~~teeLv~~~l~~~~~~~~~~~iLDlGtGSG~Iai~la~~~p~~~v~a~DiS~~Al~~A~~N~~~~~l~~rv~~~~ 178 (284) T TIGR03533 99 LIPRSPIAELIEDGFAPWLEPEPVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGLEDRVTLIQ 178 (284) T ss_pred EECCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHCCCCCEEEEE T ss_conf 43899719999999999842367771555216807999999987899879999899999999999998608543368883 Q ss_pred CCHHHHCCCCCCCCHHHHHHHHHCCC-----------C--------------HHHHHHHHHHHHCCCCEEEEEECCCC Q ss_conf 20011014333522266666742223-----------4--------------69999999998187870898406867 Q gi|254780322|r 92 CPLEEIPSISQSVDLILSPLNLHIIN-----------D--------------TLEMFSKINHMLKPGGMFLAAIPGIG 144 (273) Q Consensus 92 ~d~e~l~~~~~sfDli~s~~~l~w~~-----------d--------------~~~~l~~~~r~LkpgG~~~~s~~~~~ 144 (273) T Consensus 179 ~D~~~-~~~~~~fDlIVSNPPYI~~~e~~~l~~ev~~EP~~AL~gG~dGL~~yr~Ii~~a~~~L~pgG~l~lEiG~~Q 255 (284) T TIGR03533 179 SDLFA-ALPGRKYDLIVSNPPYVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEVGNSM 255 (284) T ss_pred CCHHH-HCCCCCCCEEEECCCCCCHHHHHHCCHHHCCCCHHHHCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCH T ss_conf 51433-145777787997799788465544976411586998758955879999999988984256978999979788 |
Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors. |
| >PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.4e-10 Score=81.04 Aligned_cols=107 Identities=15% Similarity=0.140 Sum_probs=79.0 Q ss_pred HHHHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHCCCCEEEEECCHHHHHHHHHHC----------CCCCHHHHCC Q ss_conf 999999997898636898709998599858999998626970899720011357753110----------0120011014 Q gi|254780322|r 30 DRVAKEIAFRLNMINQTFENALELHGITGIVGYTCMETKKIHRMIRAEISTEFSTLKREV----------ISCPLEEIPS 99 (273) Q Consensus 30 ~~~a~~l~~~l~~~~~~~~~vLdlGcGtG~~~~~l~~~~~~~~v~~~D~s~~~~~~~~~~----------~~~d~e~l~~ 99 (273) T Consensus 182 D~GS~lLL~~l~~--~~~g~VLDlGCG~Gvi~~~la~~~p~~~v~l~Dv~a~Al~~ar~nl~~N~l~~~v~~sd~~~--~ 257 (342) T PRK09489 182 DVGSQLLLSTLTP--HTKGKVLDVGCGAGVLSAVLAQHSPKIRLTLCDVSAPAVEASRATLAANGLEGEVFASNVFS--E 257 (342) T ss_pred CHHHHHHHHHCCC--CCCCCEEEECCCHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHCCCCEEEECCCCC--C T ss_conf 8799999973783--24884786067817999999986999769999688999999999899809886899756445--6 Q ss_pred CCCCCCHHHHHHHHHCCCC-----HHHHHHHHHHHHCCCCEEEEEE Q ss_conf 3335222666667422234-----6999999999818787089840 Q gi|254780322|r 100 ISQSVDLILSPLNLHIIND-----TLEMFSKINHMLKPGGMFLAAI 140 (273) Q Consensus 100 ~~~sfDli~s~~~l~w~~d-----~~~~l~~~~r~LkpgG~~~~s~ 140 (273) T Consensus 258 v~~~fD~IvsNPPFH~G~~~~~~i~~~fi~~A~~~L~~gG~L~iVA 303 (342) T PRK09489 258 IKGRFDMIISNPPFHDGIQTSLDAAQTLIRGAVRHLNSGGELRIVA 303 (342) T ss_pred CCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEE T ss_conf 5567898996885215752658999999999998612498899998 |
|
| >COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.2e-09 Score=75.56 Aligned_cols=109 Identities=17% Similarity=0.187 Sum_probs=81.6 Q ss_pred HHHHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHCCCCEEEEECCHHHHHHHHHHCCC----------CCHHHHCC Q ss_conf 99999999789863689870999859985899999862697089972001135775311001----------20011014 Q gi|254780322|r 30 DRVAKEIAFRLNMINQTFENALELHGITGIVGYTCMETKKIHRMIRAEISTEFSTLKREVIS----------CPLEEIPS 99 (273) Q Consensus 30 ~~~a~~l~~~l~~~~~~~~~vLdlGcGtG~~~~~l~~~~~~~~v~~~D~s~~~~~~~~~~~~----------~d~e~l~~ 99 (273) T Consensus 144 D~GS~lLl~~l~~~--~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~~v~~s~~~~~v 221 (300) T COG2813 144 DKGSRLLLETLPPD--LGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGVENTEVWASNLYEPV 221 (300) T ss_pred CHHHHHHHHHCCCC--CCCCEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCCCCCCEEEEECCCCCC T ss_conf 83889999737755--6996887078842999999986898728998266999999887699739876379981244665 Q ss_pred CCCCCCHHHHHHHHHCCCCH-----HHHHHHHHHHHCCCCEEEEEEC Q ss_conf 33352226666674222346-----9999999998187870898406 Q gi|254780322|r 100 ISQSVDLILSPLNLHIINDT-----LEMFSKINHMLKPGGMFLAAIP 141 (273) Q Consensus 100 ~~~sfDli~s~~~l~w~~d~-----~~~l~~~~r~LkpgG~~~~s~~ 141 (273) T Consensus 222 ~~-kfd~IisNPPfh~G~~v~~~~~~~ii~~A~~~L~~gGeL~iVan 267 (300) T COG2813 222 EG-KFDLIISNPPFHAGKAVVHSLAQEIIAAAARHLKPGGELWIVAN 267 (300) T ss_pred CC-CCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEC T ss_conf 44-00689848884677101678899999999976045977999975 |
|
| >PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.94 E-value=2.3e-09 Score=73.99 Aligned_cols=105 Identities=15% Similarity=0.058 Sum_probs=77.8 Q ss_pred HHHHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHCCCCEEEEECCHHHHHHHHHH-----------CCCCCHHHHC Q ss_conf 99999999789863689870999859985899999862697089972001135775311-----------0012001101 Q gi|254780322|r 30 DRVAKEIAFRLNMINQTFENALELHGITGIVGYTCMETKKIHRMIRAEISTEFSTLKRE-----------VISCPLEEIP 98 (273) Q Consensus 30 ~~~a~~l~~~l~~~~~~~~~vLdlGcGtG~~~~~l~~~~~~~~v~~~D~s~~~~~~~~~-----------~~~~d~e~l~ 98 (273) T Consensus 64 P~~~A~ml~~L~-l-~~~~~VLeIGtGsGY~tAlLa~l~--~~V~siE~~~~l~~~a~~~l~~~~~~nv~~~~gdg~~g~ 139 (213) T PRK00312 64 PYMVARMTELLE-L-KPGDRVLEIGTGSGYQAAVLAHLV--ERVFSVERIKTLQWQAKRRLKQLGLHNVSVRHGDGWKGW 139 (213) T ss_pred HHHHHHHHHHHC-C-CCCCEEEEECCCCCHHHHHHHHHC--CCEEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCC T ss_conf 999999999843-6-899759996598609999999862--928999428999999999999849987699968876678 Q ss_pred CCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHCCCCEEEEEECCCC Q ss_conf 4333522266666742223469999999998187870898406867 Q gi|254780322|r 99 SISQSVDLILSPLNLHIINDTLEMFSKINHMLKPGGMFLAAIPGIG 144 (273) Q Consensus 99 ~~~~sfDli~s~~~l~w~~d~~~~l~~~~r~LkpgG~~~~s~~~~~ 144 (273) T Consensus 140 ~~~~pfD~Iii~~a~~~~P~------~l~~qL~~gGrLV~Pig~~~ 179 (213) T PRK00312 140 PAYAPFDRILVTAAAPEIPR------ALLDQLAEGGILVAPIGPGE 179 (213) T ss_pred CCCCCCCEEEEEECCHHHHH------HHHHHCCCCCEEEEEECCCC T ss_conf 76697248999843412259------99984532979999980499 |
|
| >COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.89 E-value=1.2e-08 Score=69.74 Aligned_cols=113 Identities=18% Similarity=0.222 Sum_probs=69.3 Q ss_pred HHHHHHHHHHHHHH-HCCCCCCCEEEECCCCCHHHHHHHHHCCCCEEEEECCHHHHHHHHHHCCC---------CCHHHH Q ss_conf 99999999997898-63689870999859985899999862697089972001135775311001---------200110 Q gi|254780322|r 28 LLDRVAKEIAFRLN-MINQTFENALELHGITGIVGYTCMETKKIHRMIRAEISTEFSTLKREVIS---------CPLEEI 97 (273) Q Consensus 28 l~~~~a~~l~~~l~-~~~~~~~~vLdlGcGtG~~~~~l~~~~~~~~v~~~D~s~~~~~~~~~~~~---------~d~e~l 97 (273) T Consensus 91 iPr~dTe~Lve~~l~~~~~~~~~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l~~~~~~~~dlf 170 (280) T COG2890 91 IPRPDTELLVEAALALLLQLDKRILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGLVRVLVVQSDLF 170 (280) T ss_pred CCCCCHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHCCCCEEEEECCHH T ss_conf 88976799999999751115891899658831999999961898879999899999999999999828974798740033 Q ss_pred CCCCCCCCHHHHHHHHH------C-------------------CCCHHHHHHHHHHHHCCCCEEEEEE Q ss_conf 14333522266666742------2-------------------2346999999999818787089840 Q gi|254780322|r 98 PSISQSVDLILSPLNLH------I-------------------INDTLEMFSKINHMLKPGGMFLAAI 140 (273) Q Consensus 98 ~~~~~sfDli~s~~~l~------w-------------------~~d~~~~l~~~~r~LkpgG~~~~s~ 140 (273) T Consensus 171 ~~~~~~fDlIVsNPPYip~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~ 238 (280) T COG2890 171 EPLRGKFDLIVSNPPYIPAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEI 238 (280) T ss_pred HCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCEEEEEE T ss_conf 34688857799689988885211374213589799872487778999999998998728682899997 |
|
| >pfam01170 UPF0020 Putative RNA methylase family UPF0020 | Back alignment and domain information |
|---|
Probab=98.81 E-value=9.8e-09 Score=70.27 Aligned_cols=125 Identities=14% Similarity=0.143 Sum_probs=88.5 Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHCCCCEEEEECCHHHHHHHHHH---------- Q ss_conf 1746220689999999999789863689870999859985899999862697089972001135775311---------- Q gi|254780322|r 19 RQKDFSVYFLLDRVAKEIAFRLNMINQTFENALELHGITGIVGYTCMETKKIHRMIRAEISTEFSTLKRE---------- 88 (273) Q Consensus 19 ~~~~~~~~~l~~~~a~~l~~~l~~~~~~~~~vLdlGcGtG~~~~~l~~~~~~~~v~~~D~s~~~~~~~~~---------- 88 (273) T Consensus 4 R~~~~~a~-L~~~lAa~l~~-la~~~-~g~~vlDP~CGSGtilIEAa~~~~~~~~~G~Did~~~v~~A~~N~~~~g~~~~ 80 (171) T pfam01170 4 RPFNGPAP-LKATLARAMVN-LAGWK-PGDPLLDPFCGSGTILIEAALMGANVALYGSDIDRRMVRGARINAEAAGVGDK 80 (171) T ss_pred CCCCCCCC-CCHHHHHHHHH-HHCCC-CCCEEEECCCCCCHHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHHHHCCCCC T ss_conf 77899989-88999999999-85899-99978868998789999999961358953675879999999999998289984 Q ss_pred --CCCCCHHHHCCCCCCCCHHHHHHHHHC----CCCH----HHHHHHHHHHHCCCCEEEEEECCCCCCHH Q ss_conf --001200110143335222666667422----2346----99999999981878708984068676334 Q gi|254780322|r 89 --VISCPLEEIPSISQSVDLILSPLNLHI----INDT----LEMFSKINHMLKPGGMFLAAIPGIGTLHE 148 (273) Q Consensus 89 --~~~~d~e~l~~~~~sfDli~s~~~l~w----~~d~----~~~l~~~~r~LkpgG~~~~s~~~~~~~~e 148 (273) T Consensus 81 i~~~~~D~~~l~~~~~~~d~Iv~nPPYG~r~~~~~~~~~ly~~~~~~~~~~~~--g~~~~i~~~~~~~~k 148 (171) T pfam01170 81 IEFVQADAADLPLLNGSVDTIVTDPPYGIRIGSKGALEKLYPAFLDEAKRVLR--GRLVFATPEKKDFEK 148 (171) T ss_pred EEEEECCHHHCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCC--CCEEEEEECCHHHHH T ss_conf 69997666538798788318998898201136545699999999999998689--978999968689999 |
This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains. |
| >PRK09329 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.80 E-value=2e-08 Score=68.45 Aligned_cols=112 Identities=10% Similarity=0.172 Sum_probs=71.8 Q ss_pred HHHHHHHHHHHHHHHH-HCCC--CCCCEEEECCCCCHHHHHHHHHCCCCEEEEECCHHHHHHHHHH----------CCCC Q ss_conf 6899999999997898-6368--9870999859985899999862697089972001135775311----------0012 Q gi|254780322|r 26 YFLLDRVAKEIAFRLN-MINQ--TFENALELHGITGIVGYTCMETKKIHRMIRAEISTEFSTLKRE----------VISC 92 (273) Q Consensus 26 ~~l~~~~a~~l~~~l~-~~~~--~~~~vLdlGcGtG~~~~~l~~~~~~~~v~~~D~s~~~~~~~~~----------~~~~ 92 (273) T Consensus 86 VLIPRpETE~LVe~~l~~~~~~~~~~~~lDlGtGSG~I~isla~~~p~~~v~avDiS~~Al~~A~~Na~~~~~~v~~~~~ 165 (285) T PRK09329 86 VLIPRQETEILVEKIIGYLQSHKEIQTFYDVCCGSGCIGLAIKKHCPHVHVVLSDICPQALAVAKSNAKSNGLDVDFLLG 165 (285) T ss_pred CEECCCHHHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHCCCCEEEHHHCCHHHHHHHHHHHHHCCCCEEEEEC T ss_conf 42059609999999999986187777788845417999999998589865880337699999999999972994799976 Q ss_pred CHHHHCCCCCCCCHHHHHHHHHCCC------------CH--------------HHHHHHHHHHHCCCCEEEEE Q ss_conf 0011014333522266666742223------------46--------------99999999981878708984 Q gi|254780322|r 93 PLEEIPSISQSVDLILSPLNLHIIN------------DT--------------LEMFSKINHMLKPGGMFLAA 139 (273) Q Consensus 93 d~e~l~~~~~sfDli~s~~~l~w~~------------d~--------------~~~l~~~~r~LkpgG~~~~s 139 (273) T Consensus 166 dl~~-~~-~~~~DlIvSNPPYI~~~e~~~l~~eV~~~EP~~AL~gg~dGl~~~r~i~~~a~~~L~~~G~l~~E 236 (285) T PRK09329 166 DLFA-PF-SRPADAFVCNPPYLSFKEFFHVDPEVRCHEPWKALVGGSSGLEFYQRIAQELPKILVPGGVGWLE 236 (285) T ss_pred CHHH-HH-CCCCCEEEECCCCCCHHHHHHCCHHHHHCCCHHHHHCCCCHHHHHHHHHHHHHHHCCCCCEEEEE T ss_conf 3003-33-47678899899988844454498755436709988479738999999999999960049889999 |
|
| >PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.80 E-value=4.4e-08 Score=66.46 Aligned_cols=117 Identities=12% Similarity=0.085 Sum_probs=80.0 Q ss_pred HHHHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHC-CCCEEEEECCHHHHHHHHHH------------CCCCCH-H Q ss_conf 999999997898636898709998599858999998626-97089972001135775311------------001200-1 Q gi|254780322|r 30 DRVAKEIAFRLNMINQTFENALELHGITGIVGYTCMETK-KIHRMIRAEISTEFSTLKRE------------VISCPL-E 95 (273) Q Consensus 30 ~~~a~~l~~~l~~~~~~~~~vLdlGcGtG~~~~~l~~~~-~~~~v~~~D~s~~~~~~~~~------------~~~~d~-e 95 (273) T Consensus 26 ~EVRa~~l~~L~l--~~~~~vwDIGaGsGsvsiEaa~~~~~~~~V~aIE~~~e~~~~~~~N~~kfg~~~nv~~i~G~ap~ 103 (198) T PRK00377 26 EEIRALALSKLRL--FKGGKLVDVGCGTGSVSVEAALIVGEGGKVYAIDKDELAVELTKKNAEKFGVGDNVVLIEGEAPE 103 (198) T ss_pred HHHHHHHHHHHCC--CCCCEEEEECCCEEHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCCEEEEECCHHH T ss_conf 9999999997099--99899999177032999999996697875999967888999999999980999885999525488 Q ss_pred HHCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHH Q ss_conf 10143335222666667422234699999999981878708984068676334778 Q gi|254780322|r 96 EIPSISQSVDLILSPLNLHIINDTLEMFSKINHMLKPGGMFLAAIPGIGTLHELRK 151 (273) Q Consensus 96 ~l~~~~~sfDli~s~~~l~w~~d~~~~l~~~~r~LkpgG~~~~s~~~~~~~~el~~ 151 (273) T Consensus 104 ~l~~l~p~pD~vFIGG~---~g~l~~il~~~~~~L~~gGriVinaVtlet~~~~~~ 156 (198) T PRK00377 104 VLPKLNPKSDRYFIGGG---GEELPEIIQAALEKIGKGGRIVADAILLESLNKALS 156 (198) T ss_pred HHHCCCCCCCEEEEECC---CCCHHHHHHHHHHHCCCCCEEEEEEECHHHHHHHHH T ss_conf 77208998898999788---777899999999857999899998362988999999 |
|
| >pfam01596 Methyltransf_3 O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.69 E-value=9.2e-08 Score=64.61 Aligned_cols=106 Identities=10% Similarity=0.070 Sum_probs=76.8 Q ss_pred HHHHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHC-CCCEEEEECCHHHHHHHHHHC------------CCCCHH- Q ss_conf 999999997898636898709998599858999998626-970899720011357753110------------012001- Q gi|254780322|r 30 DRVAKEIAFRLNMINQTFENALELHGITGIVGYTCMETK-KIHRMIRAEISTEFSTLKREV------------ISCPLE- 95 (273) Q Consensus 30 ~~~a~~l~~~l~~~~~~~~~vLdlGcGtG~~~~~l~~~~-~~~~v~~~D~s~~~~~~~~~~------------~~~d~e- 95 (273) T Consensus 30 ~~~g~-~L~~l~~~~-~ak~iLEiGT~~GySal~lA~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gdA~~ 107 (204) T pfam01596 30 PEEGQ-FLSMLVKLV-GAKRTLEIGVFTGYSLLATALALPEDGKITACDIDREAYEIGLPFIQKAGVADKIEFRVGDALK 107 (204) T ss_pred HHHHH-HHHHHHHHH-CCCEEEEEECCCCHHHHHHHHHCCCCCEEEEEEECHHHHHHHHHHHHHCCCCCEEEEEEECHHH T ss_conf 99999-999999975-9878999834325999999984899968999980489999999999977987447999874999 Q ss_pred HHC-----CCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHCCCCEEEEEE Q ss_conf 101-----433352226666674222346999999999818787089840 Q gi|254780322|r 96 EIP-----SISQSVDLILSPLNLHIINDTLEMFSKINHMLKPGGMFLAAI 140 (273) Q Consensus 96 ~l~-----~~~~sfDli~s~~~l~w~~d~~~~l~~~~r~LkpgG~~~~s~ 140 (273) T Consensus 108 ~l~~l~~~~~~~~fD~vFiDad---K~~Y~~y~e~~~~lL~~gGiii~DN 154 (204) T pfam01596 108 TLEQLVEDKPLGEFDFAFVDAD---KSSYPNYYERLLELVKVGGLIAIDN 154 (204) T ss_pred HHHHHHHCCCCCCCCEEEEECC---HHHHHHHHHHHHHHHCCCEEEEEEC T ss_conf 9999984477776438998188---8777999999998636980999944 |
Members of this family are O-methyltransferases. The family includes catechol o-methyltransferase, caffeoyl-CoA O-methyltransferase, and a family of bacterial O-methyltransferases that may be involved in antibiotic production. |
| >pfam01739 CheR CheR methyltransferase, SAM binding domain | Back alignment and domain information |
|---|
Probab=98.54 E-value=5.2e-07 Score=60.23 Aligned_cols=116 Identities=16% Similarity=0.219 Sum_probs=76.6 Q ss_pred HHHHHHHHHHHHHHCC-CCCCCEEEECCCCCHHHHHHH----HHC-----CCCEEEEECCHHHHHHHHHH---------- Q ss_conf 9999999997898636-898709998599858999998----626-----97089972001135775311---------- Q gi|254780322|r 29 LDRVAKEIAFRLNMIN-QTFENALELHGITGIVGYTCM----ETK-----KIHRMIRAEISTEFSTLKRE---------- 88 (273) Q Consensus 29 ~~~~a~~l~~~l~~~~-~~~~~vLdlGcGtG~~~~~l~----~~~-----~~~~v~~~D~s~~~~~~~~~---------- 88 (273) T Consensus 12 f~~l~~~ilp~l~~~~~~~~lrIWsagCStGEE~YSlAi~l~e~~~~~~~~~~~I~atDI~~~~l~~Ar~G~Y~~~~~~~ 91 (194) T pfam01739 12 FEELEKKVLPELAQARNSRRVRIWSAGCSSGEEPYSLAMLLAETLPNALPWDFKILATDIDLSALEKARAGVYPERELEG 91 (194) T ss_pred HHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHCCCCHHHHHC T ss_conf 99999998799985288995599973688995189999999997432578744999973988999999878988999845 Q ss_pred -----------------------------CCCCCHHHHCCCCCCCCHHHHHHHHHCCCCH--HHHHHHHHHHHCCCCEEE Q ss_conf -----------------------------0012001101433352226666674222346--999999999818787089 Q gi|254780322|r 89 -----------------------------VISCPLEEIPSISQSVDLILSPLNLHIINDT--LEMFSKINHMLKPGGMFL 137 (273) Q Consensus 89 -----------------------------~~~~d~e~l~~~~~sfDli~s~~~l~w~~d~--~~~l~~~~r~LkpgG~~~ 137 (273) T Consensus 92 ~p~~~~~ryF~~~~~~~~~i~~~lr~~V~F~~~NL~~~~~~-~~~DlIfCRNVlIYF~~~~~~~vl~~l~~~L~~gG~L~ 170 (194) T pfam01739 92 LPPELLRRYFTKGAGGGYRVKPEIKEMVLFEYHNLLDYPPL-GDFDVIFCRNVLIYFDEETQRKILNRFASALKPGGYLF 170 (194) T ss_pred CCHHHHHHHCCCCCCCCEEECHHHHCCCEEEECCCCCCCCC-CCEEEEEECCEEEECCHHHHHHHHHHHHHHHCCCCEEE T ss_conf 99999996286078994876889971166854665568876-75039998021013799999999999999848994999 Q ss_pred EEECCCCCCH Q ss_conf 8406867633 Q gi|254780322|r 138 AAIPGIGTLH 147 (273) Q Consensus 138 ~s~~~~~~~~ 147 (273) T Consensus 171 lG--~~Esl~ 178 (194) T pfam01739 171 LG--HSESLP 178 (194) T ss_pred EE--CCCCCC T ss_conf 80--756688 |
CheR proteins are part of the chemotaxis signaling mechanism in bacteria. CheR methylates the chemotaxis receptor at specific glutamate residues. CheR is an S-adenosylmethionine- dependent methyltransferase - the C-terminal domain (this one) binds SAM. |
| >PRK10901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.41 E-value=7.4e-07 Score=59.31 Aligned_cols=113 Identities=19% Similarity=0.108 Sum_probs=79.0 Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHCCCCEEEEECCHHHHHHHHH----------HCCCCCHHH Q ss_conf 8999999999978986368987099985998589999986269708997200113577531----------100120011 Q gi|254780322|r 27 FLLDRVAKEIAFRLNMINQTFENALELHGITGIVGYTCMETKKIHRMIRAEISTEFSTLKR----------EVISCPLEE 96 (273) Q Consensus 27 ~l~~~~a~~l~~~l~~~~~~~~~vLdlGcGtG~~~~~l~~~~~~~~v~~~D~s~~~~~~~~----------~~~~~d~e~ 96 (273) T Consensus 228 ~VQD~aSql~~~ll~p--~~g~~VLD~CAaPGGKt~~la~~~~~~~v~A~D~~~~Rl~~l~~n~~Rlg~~~~v~~~d~~~ 305 (428) T PRK10901 228 TVQDASAQGCVTLLAP--QNGEHILDLCAAPGGKTTHILEVAPEAQVLAVDIDEQRLSRVYDNLKRLGMKATVKQGDGRY 305 (428) T ss_pred EEECHHHHHHHHHCCC--CCCCEEEEECCCCCHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCC T ss_conf 9817276789986498--88987987168876689999996458928999698889999999999759973999776557 Q ss_pred HC--CCCCCCCHHHHHH------HH------HCCCCH----------HHHHHHHHHHHCCCCEEEEEEC Q ss_conf 01--4333522266666------74------222346----------9999999998187870898406 Q gi|254780322|r 97 IP--SISQSVDLILSPL------NL------HIINDT----------LEMFSKINHMLKPGGMFLAAIP 141 (273) Q Consensus 97 l~--~~~~sfDli~s~~------~l------~w~~d~----------~~~l~~~~r~LkpgG~~~~s~~ 141 (273) T Consensus 306 ~~~~~~~~~fD~ILlDaPCSg~G~lrR~Pdikw~~~~~di~~l~~lQ~~iL~~a~~~lk~gG~LvYsTC 374 (428) T PRK10901 306 PSQWCGEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIAELAQLQSEILDAIWPHLKSGGTLVYATC 374 (428) T ss_pred HHHHCCCCCCCEEEECCCCCCCEEECCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEC T ss_conf 233134456787997589888724446854211289999999999999999999986688988999989 |
|
| >PRK00107 gidB glucose-inhibited division protein B; Reviewed | Back alignment and domain information |
|---|
Probab=98.28 E-value=5.8e-06 Score=54.13 Aligned_cols=115 Identities=17% Similarity=0.167 Sum_probs=79.7 Q ss_pred HHHHHHHHHHHHHH---CCC-CCCCEEEECCCCCHHHHHHHHHCCCCEEEEECCHHHHHH---HH--------HHCCCCC Q ss_conf 99999999978986---368-987099985998589999986269708997200113577---53--------1100120 Q gi|254780322|r 29 LDRVAKEIAFRLNM---INQ-TFENALELHGITGIVGYTCMETKKIHRMIRAEISTEFST---LK--------REVISCP 93 (273) Q Consensus 29 ~~~~a~~l~~~l~~---~~~-~~~~vLdlGcGtG~~~~~l~~~~~~~~v~~~D~s~~~~~---~~--------~~~~~~d 93 (273) T Consensus 48 ~~~~~rHi~DSl~~~~~~~~~~~~~vlDiGSGaGfPGiplAI~~p~~~~~Lves~~KK~~FL~~~~~~L~L~nv~v~~~R 127 (216) T PRK00107 48 EEMWVRHILDSLALLPYLQGEKPIRVLDVGSGAGFPGIPLAIARPDLQVTLVDSLGKKIAFLRQVAAELGLKNVTVVHGR 127 (216) T ss_pred HHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCHHHHHHHHCCCCCEEEECHHHHHHHHHHHHHHHCCCCCEEEEEHH T ss_conf 99999988857889873376658779970799994267899977877299973876999999999997699987998635 Q ss_pred HHHHCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCHHH Q ss_conf 01101433352226666674222346999999999818787089840686763347 Q gi|254780322|r 94 LEEIPSISQSVDLILSPLNLHIINDTLEMFSKINHMLKPGGMFLAAIPGIGTLHEL 149 (273) Q Consensus 94 ~e~l~~~~~sfDli~s~~~l~w~~d~~~~l~~~~r~LkpgG~~~~s~~~~~~~~el 149 (273) T Consensus 128 ~E~~~-~~~~fD~itsRAv----a~l~~l~~~~~~~l~~~g~~i~~-KG~~~~~Ei 177 (216) T PRK00107 128 AEEFG-QEEKFDVVTSRAV----ASLSDLVELCLPLLKPGGRFLAL-KGQDPEEEI 177 (216) T ss_pred HHCCC-CCCCCCEEEEEHH----HCHHHHHHHHHHHCCCCCEEEEE-CCCCHHHHH T ss_conf 44046-5678668986054----06999999999754889799998-799959999 |
|
| >pfam02527 GidB rRNA small subunit methyltransferase G | Back alignment and domain information |
|---|
Probab=98.22 E-value=1.4e-05 Score=51.89 Aligned_cols=118 Identities=17% Similarity=0.173 Sum_probs=83.8 Q ss_pred HHHHHHHHHHHHHH---CCCCCCCEEEECCCCCHHHHHHHHHCCCCEEEEECCHHHHHHH-----------HHHCCCCCH Q ss_conf 99999999978986---3689870999859985899999862697089972001135775-----------311001200 Q gi|254780322|r 29 LDRVAKEIAFRLNM---INQTFENALELHGITGIVGYTCMETKKIHRMIRAEISTEFSTL-----------KREVISCPL 94 (273) Q Consensus 29 ~~~~a~~l~~~l~~---~~~~~~~vLdlGcGtG~~~~~l~~~~~~~~v~~~D~s~~~~~~-----------~~~~~~~d~ 94 (273) T Consensus 28 ~~i~~rHi~DSl~~~~~~~~~~~~ilDiGSGaGfPGi~LAI~~p~~~~~LvEs~~KK~~FL~~v~~~L~L~nv~v~~~R~ 107 (184) T pfam02527 28 NELLERHLLDSLVVLEYLDNIRIKVADVGSGAGFPGIPLAIAFPDKKLTLLESLLKKINFLEELKKELNLENVTIVHARA 107 (184) T ss_pred HHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHCCCCCEEEEECCH T ss_conf 99999999999998774266798688347988846799999677855999928289999999999985999769995604 Q ss_pred HHHCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHH Q ss_conf 1101433352226666674222346999999999818787089840686763347788 Q gi|254780322|r 95 EEIPSISQSVDLILSPLNLHIINDTLEMFSKINHMLKPGGMFLAAIPGIGTLHELRKA 152 (273) Q Consensus 95 e~l~~~~~sfDli~s~~~l~w~~d~~~~l~~~~r~LkpgG~~~~s~~~~~~~~el~~~ 152 (273) T Consensus 108 E~~~~-~~~~D~v~aRA~----a~l~~ll~~~~~~l~~~g~~i~-~KG~~~~~El~~a 159 (184) T pfam02527 108 EEYQH-EEQYDVITSRAV----ASLNELTEWALPLLKPGGYFLA-YKGKQAEDEIEEL 159 (184) T ss_pred HHCCC-CCCCCEEEECHH----CCHHHHHHHHHHHCCCCCEEEE-ECCCCHHHHHHHH T ss_conf 41464-467878998100----5799999999986388989999-8899989999987 |
This is a family of bacterial glucose inhibited division proteins these are probably involved in the regulation of cell devision. GidB has been shown to be a methyltransferase G specific to the rRNA small subunit. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. GidB specifically methylates the N7 position of a guanosine in 16S rRNA. |
| >pfam09243 Rsm22 Mitochondrial small ribosomal subunit Rsm22 | Back alignment and domain information |
|---|
Probab=98.19 E-value=1.5e-05 Score=51.78 Aligned_cols=117 Identities=11% Similarity=0.058 Sum_probs=79.1 Q ss_pred HHHHHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHCC-CCEEEEECCHHHHHHHHHHCCCC-----------CHHH Q ss_conf 99999999978986368987099985998589999986269-70899720011357753110012-----------0011 Q gi|254780322|r 29 LDRVAKEIAFRLNMINQTFENALELHGITGIVGYTCMETKK-IHRMIRAEISTEFSTLKREVISC-----------PLEE 96 (273) Q Consensus 29 ~~~~a~~l~~~l~~~~~~~~~vLdlGcGtG~~~~~l~~~~~-~~~v~~~D~s~~~~~~~~~~~~~-----------d~e~ 96 (273) T Consensus 19 ~~~vl~Ei~~r~p~f--~P~slLD~GsGpGt~~wAa~~~w~~l~~~~~vd~s~~m~~l~~~L~~~~~~~~~~~~~~~~~~ 96 (275) T pfam09243 19 VRASLDELAERVPQF--APLSHLDVGAGPGTALWAASELWPGLEPATVIDASEAALAIGEELARHIPALKHAWRARDVIG 96 (275) T ss_pred HHHHHHHHHHHCCCC--CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHCCCCCCCCEECCCCCC T ss_conf 999999999867999--987577727757999999998842476899974899999999999851843454311143101 Q ss_pred HCCCCCCCCHHHHHHHHHCCCCH--HHHHHHHHHHHCCCCEEEEEECCCCCCHHH Q ss_conf 01433352226666674222346--999999999818787089840686763347 Q gi|254780322|r 97 IPSISQSVDLILSPLNLHIINDT--LEMFSKINHMLKPGGMFLAAIPGIGTLHEL 149 (273) Q Consensus 97 l~~~~~sfDli~s~~~l~w~~d~--~~~l~~~~r~LkpgG~~~~s~~~~~~~~el 149 (273) T Consensus 97 ~~~~~~~~DLVi~sy~L~El~~~~R~~~v~~LW~~~--~g~LVlVEpGtp~Gf~~ 149 (275) T pfam09243 97 AALDFEPADLVTISYVLDELTPASREKVIDNLWAKA--AQALVIVEPGTPAGWRR 149 (275) T ss_pred CCCCCCCCCEEEEECHHCCCCHHHHHHHHHHHHHHC--CCEEEEEECCCHHHHHH T ss_conf 124589878899614220799789999999999953--99799991898179999 |
Rsm22 has been identified as a mitochondrial small ribosomal subunit and is a methyltransferase. In Schizosaccharomyces pombe, Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria. |
| >PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed | Back alignment and domain information |
|---|
Probab=97.99 E-value=3.1e-05 Score=49.86 Aligned_cols=118 Identities=13% Similarity=0.146 Sum_probs=75.8 Q ss_pred CHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHH-CCCCEEEEECCHHHHHHHHH-----------HCCC Q ss_conf 20689999999999789863689870999859985899999862-69708997200113577531-----------1001 Q gi|254780322|r 24 SVYFLLDRVAKEIAFRLNMINQTFENALELHGITGIVGYTCMET-KKIHRMIRAEISTEFSTLKR-----------EVIS 91 (273) Q Consensus 24 ~~~~l~~~~a~~l~~~l~~~~~~~~~vLdlGcGtG~~~~~l~~~-~~~~~v~~~D~s~~~~~~~~-----------~~~~ 91 (273) T Consensus 91 G~~yiQe~ssm~~~~~l~~~p~pge~VLDlCAAPGGKtt~la~~m~~~G~lvAnd~~~~R~~~L~~n~~r~G~~n~~vt~ 170 (471) T PRK11933 91 GLFYIQEASSMLPVAALFADDNAPQRVLDMAAAPGSKTTQIAALMNNQGALVANEYSASRVKVLHANISRCGVSNVALTH 170 (471) T ss_pred CEEEEECHHHHHHHHHHCCCCCCCCEEEEECCCCCHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCEEEEE T ss_conf 54999776885578885248899998999577854899999997589966999838899999999999971998479993 Q ss_pred CCHHHH-CCCCCCCCHHHHHH--------------HHHCCCCH--------HHHHHHHHHHHCCCCEEEEEEC Q ss_conf 200110-14333522266666--------------74222346--------9999999998187870898406 Q gi|254780322|r 92 CPLEEI-PSISQSVDLILSPL--------------NLHIINDT--------LEMFSKINHMLKPGGMFLAAIP 141 (273) Q Consensus 92 ~d~e~l-~~~~~sfDli~s~~--------------~l~w~~d~--------~~~l~~~~r~LkpgG~~~~s~~ 141 (273) T Consensus 171 ~d~~~~~~~~~~~FD~ILvDaPCSG~G~~rk~p~~~~~w~~~~~~~~~~~Q~~iL~~A~~~LkpGG~LVYSTC 243 (471) T PRK11933 171 FDGRVFGAALPEMFDAILLDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTC 243 (471) T ss_pred CCHHHHHHHCCCCCCEEEECCCCCCCEEECCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECC T ss_conf 5866740323010667998788888733555975764189879999999999999999987388968999817 |
|
| >COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=97.88 E-value=4.8e-05 Score=48.75 Aligned_cols=106 Identities=17% Similarity=0.097 Sum_probs=77.3 Q ss_pred HHHHHHHHHHHHHHCCCC---CCCEEEECCCCCHHHHHHHHHCCCCEEEEECCHHHHHH---HH--------HHCCCCCH Q ss_conf 999999999789863689---87099985998589999986269708997200113577---53--------11001200 Q gi|254780322|r 29 LDRVAKEIAFRLNMINQT---FENALELHGITGIVGYTCMETKKIHRMIRAEISTEFST---LK--------REVISCPL 94 (273) Q Consensus 29 ~~~~a~~l~~~l~~~~~~---~~~vLdlGcGtG~~~~~l~~~~~~~~v~~~D~s~~~~~---~~--------~~~~~~d~ 94 (273) T Consensus 47 ~e~~~rHilDSl~~~~~~~~~~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~L~nv~i~~~Ra 126 (215) T COG0357 47 EELWQRHILDSLVLLPYLDGKAKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELGLENVEIVHGRA 126 (215) T ss_pred HHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHHHCCCCEEEEHHHH T ss_conf 89999999998646650256688799857999973176888566881899716750799999999985999749863127 Q ss_pred HHHCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHCCCCEEEE Q ss_conf 11014333522266666742223469999999998187870898 Q gi|254780322|r 95 EEIPSISQSVDLILSPLNLHIINDTLEMFSKINHMLKPGGMFLA 138 (273) Q Consensus 95 e~l~~~~~sfDli~s~~~l~w~~d~~~~l~~~~r~LkpgG~~~~ 138 (273) T Consensus 127 E~~~~~~~~~D~vtsRAv----a~L~~l~e~~~pllk~~g~~~~ 166 (215) T COG0357 127 EEFGQEKKQYDVVTSRAV----ASLNVLLELCLPLLKVGGGFLA 166 (215) T ss_pred HHCCCCCCCCCEEEEEEE----CCHHHHHHHHHHHCCCCCCCHH T ss_conf 660144665758985420----2568899999984346883202 |
|
| >pfam10672 Methyltrans_SAM S-adenosylmethionine-dependent methyltransferase | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.00051 Score=42.79 Aligned_cols=108 Identities=16% Similarity=0.227 Sum_probs=71.7 Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHCCCCEEEEECCHHHHHHHHHH-------------CCCCC Q ss_conf 89999999999789863689870999859985899999862697089972001135775311-------------00120 Q gi|254780322|r 27 FLLDRVAKEIAFRLNMINQTFENALELHGITGIVGYTCMETKKIHRMIRAEISTEFSTLKRE-------------VISCP 93 (273) Q Consensus 27 ~l~~~~a~~l~~~l~~~~~~~~~vLdlGcGtG~~~~~l~~~~~~~~v~~~D~s~~~~~~~~~-------------~~~~d 93 (273) T Consensus 108 flDqR~nR~~~~~~----~~g~rvLn~Fsytg~fsv~A~~~-GA~~v~~vD~S~~al~~a~~N~~lN~~~~~~~~~~~~D 182 (286) T pfam10672 108 FLDMRLGRRWVQEN----AKGKNVLNLFAYTCGFSVAAIAG-GASQVVNVDMARGSLSKGRDNHRLNGHDLGRVSFLGHD 182 (286) T ss_pred EHHHHHHHHHHHHH----CCCCCEEEECCCCCHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHCCCCCCCEEEEEEH T ss_conf 34238889999987----28983253114786999998767-98779999198899999999999769995436999830 Q ss_pred HHH-HC--CCCCCCCHHHH--------HHHHHCCCCHHHHHHHHHHHHCCCCEEEEEEC Q ss_conf 011-01--43335222666--------66742223469999999998187870898406 Q gi|254780322|r 94 LEE-IP--SISQSVDLILS--------PLNLHIINDTLEMFSKINHMLKPGGMFLAAIP 141 (273) Q Consensus 94 ~e~-l~--~~~~sfDli~s--------~~~l~w~~d~~~~l~~~~r~LkpgG~~~~s~~ 141 (273) T Consensus 183 ~f~~l~~~~~~~~fD~VilDPPsf~k~~~~~--~~~Y~~l~~~a~~ll~~gG~L~~~s~ 239 (286) T pfam10672 183 IFKSWGKIKKLGPYDLVIIDPPSFQKGSFAL--TKDYKKILRRLPELLVEGGTVLACVN 239 (286) T ss_pred HHHHHHHHHCCCCCCEEEECCCCCCCCHHHH--HHHHHHHHHHHHHHCCCCCEEEEECC T ss_conf 9999999861799987998799988872478--87899999999986089968999818 |
Members of this family are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. |
| >pfam01189 Nol1_Nop2_Fmu NOL1/NOP2/sun family | Back alignment and domain information |
|---|
Probab=97.68 E-value=8.6e-05 Score=47.28 Aligned_cols=116 Identities=16% Similarity=0.134 Sum_probs=76.4 Q ss_pred CHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHC-CCCEEEEECCHHHHHHHHHH-----------CCC Q ss_conf 206899999999997898636898709998599858999998626-97089972001135775311-----------001 Q gi|254780322|r 24 SVYFLLDRVAKEIAFRLNMINQTFENALELHGITGIVGYTCMETK-KIHRMIRAEISTEFSTLKRE-----------VIS 91 (273) Q Consensus 24 ~~~~l~~~~a~~l~~~l~~~~~~~~~vLdlGcGtG~~~~~l~~~~-~~~~v~~~D~s~~~~~~~~~-----------~~~ 91 (273) T Consensus 64 G~~~vQD~aS~l~~~~L~--p~~g~~VLD~CAaPGgKt~~la~l~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~~~~~~ 141 (277) T pfam01189 64 GAVTVQDASSQLDAIALN--PQEDEFILDMCAAPGGKTTHIAELMKNEGTVVAVDRNKQRLKRVYANIQRLGVFNIIVQE 141 (277) T ss_pred CEEEEECHHHHHHHHHHC--CCCCCEEEEECCCCCCHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHCCCCCEEEEE T ss_conf 179998806778999718--899998988367888169999987589877998379789999999999975997479996 Q ss_pred CCHHHH--CCCCCCCCHHHHHHH------------HHCCCCH----------HHHHHHHHHHHCCCCEEEEEEC Q ss_conf 200110--143335222666667------------4222346----------9999999998187870898406 Q gi|254780322|r 92 CPLEEI--PSISQSVDLILSPLN------------LHIINDT----------LEMFSKINHMLKPGGMFLAAIP 141 (273) Q Consensus 92 ~d~e~l--~~~~~sfDli~s~~~------------l~w~~d~----------~~~l~~~~r~LkpgG~~~~s~~ 141 (273) T Consensus 142 ~d~~~~~~~~~~~~fD~vLvDaPCSg~G~~rr~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lk~gG~lvYsTC 215 (277) T pfam01189 142 GDARQIDQKLLGGEFDRILLDAPCSGTGVIRRDPDIKWLRREADIAQLAELQKELLKAAWDLVKPGGVLVYSTC 215 (277) T ss_pred CCCCCCCCCCCCCCCCEEEECCCCCCCCEECCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEC T ss_conf 64445574346666657997289889863455853121199999999999999999999997176998999949 |
|
| >TIGR03438 probable methyltransferase | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.00095 Score=41.18 Aligned_cols=121 Identities=17% Similarity=0.196 Sum_probs=72.7 Q ss_pred HHHHHHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHC-CCCEEEEECCHHHHHHHHHHC------------CCCCH Q ss_conf 99999999997898636898709998599858999998626-970899720011357753110------------01200 Q gi|254780322|r 28 LLDRVAKEIAFRLNMINQTFENALELHGITGIVGYTCMETK-KIHRMIRAEISTEFSTLKREV------------ISCPL 94 (273) Q Consensus 28 l~~~~a~~l~~~l~~~~~~~~~vLdlGcGtG~~~~~l~~~~-~~~~v~~~D~s~~~~~~~~~~------------~~~d~ 94 (273) T Consensus 49 IL~~~~~~Ia~~~---~-~~~~lIElGsG~~~Kt~~LL~al~~~~~Y~plDIS~~~L~~s~~~l~~~~p~l~v~~v~~dy 124 (301) T TIGR03438 49 ILERHADEIAAAT---G-AGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADF 124 (301) T ss_pred HHHHHHHHHHHHC---C-CCCEEEECCCCCCHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHCCCCEEEEEEECH T ss_conf 9998899999862---7-67647731788623789999986215638877568999999999999778997689996333 Q ss_pred HH-HCCCCC--CC-CHHHH-HHHHHCC--CCHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHH Q ss_conf 11-014333--52-22666-6674222--346999999999818787089840686763347788 Q gi|254780322|r 95 EE-IPSISQ--SV-DLILS-PLNLHII--NDTLEMFSKINHMLKPGGMFLAAIPGIGTLHELRKA 152 (273) Q Consensus 95 e~-l~~~~~--sf-Dli~s-~~~l~w~--~d~~~~l~~~~r~LkpgG~~~~s~~~~~~~~el~~~ 152 (273) T Consensus 125 ~~~l~~~~~~~~~~rl~~flGSsIGNf~~~ea~~fL~~~~~~l~~~d~lLiG~Dl~Kd~~~l~~A 189 (301) T TIGR03438 125 TQPLALPPEPAAGRRLGFFPGSTIGNFTPEEAVAFLRRIRQLLGPGGGLLIGVDLVKDPAVLEAA 189 (301) T ss_pred HCHHHCCCCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHH T ss_conf 15744566557887589970754478998999999999999719998489940445698999987 |
This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases |
| >TIGR00138 gidB methyltransferase GidB; InterPro: IPR003682 GidB (glucose-inhibited division protein B) appears to be present and in a single copy in all complete eubacterial genomes so far | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.00026 Score=44.49 Aligned_cols=117 Identities=16% Similarity=0.209 Sum_probs=79.1 Q ss_pred HHHHHHHHHHHHHCCC-----C---CCCEEEECCCCCHHHHHHH-HHCCCCEEEEECCHHHH---HHHH--------HHC Q ss_conf 9999999978986368-----9---8709998599858999998-62697089972001135---7753--------110 Q gi|254780322|r 30 DRVAKEIAFRLNMINQ-----T---FENALELHGITGIVGYTCM-ETKKIHRMIRAEISTEF---STLK--------REV 89 (273) Q Consensus 30 ~~~a~~l~~~l~~~~~-----~---~~~vLdlGcGtG~~~~~l~-~~~~~~~v~~~D~s~~~---~~~~--------~~~ 89 (273) T Consensus 25 ~~~~~h~lDSl~~~~~~~~~~~~r~~~~~~DiGSG~GfPGipL~Ci~~p~~~~~Lles~~KK~~FL~~v~~~L~L~N~~i 104 (197) T TIGR00138 25 EIIQRHLLDSLKLLELFDISKNQRTGKKVIDIGSGAGFPGIPLACILRPELKLTLLESNKKKVNFLKEVKKELGLNNVEI 104 (197) T ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHCCCCCHH T ss_conf 78776402224330000245666633126773478971456534220576428984277406899999999838998242 Q ss_pred CCCCHHHH--CCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHH Q ss_conf 01200110--143335222666667422234699999999981878708984068676334778 Q gi|254780322|r 90 ISCPLEEI--PSISQSVDLILSPLNLHIINDTLEMFSKINHMLKPGGMFLAAIPGIGTLHELRK 151 (273) Q Consensus 90 ~~~d~e~l--~~~~~sfDli~s~~~l~w~~d~~~~l~~~~r~LkpgG~~~~s~~~~~~~~el~~ 151 (273) T Consensus 105 ~~~R~E~~g~~~~~~~~D~~~~RAl~----~l~~~~e~~~~L~~~~G~~~~-~KG~~~~~E~~~ 163 (197) T TIGR00138 105 LNGRVEDLGSKQHEEQFDVITSRALV----SLNELLELTLPLLKVGGYFLA-YKGKYLEDEIEE 163 (197) T ss_pred EEHHHHHCCCCCCCCCCCEEEECCCH----HHHHHHHHHHHCCCCCCEEEE-ECCCCHHHHHHC T ss_conf 00112550554533357878980310----246888866303788978999-708665888760 |
Its mode of action is unknown, but a methytransferase fold is reported from the crystal structure. It may be a family of bacterial glucose inhibited division proteins that are involved in the regulation of cell division .; GO: 0007049 cell cycle. |
| >COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.0031 Score=38.18 Aligned_cols=114 Identities=18% Similarity=0.185 Sum_probs=72.6 Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHCCC--CEEEEECCHHHHHHHHH-----------HCCCC Q ss_conf 689999999999789863689870999859985899999862697--08997200113577531-----------10012 Q gi|254780322|r 26 YFLLDRVAKEIAFRLNMINQTFENALELHGITGIVGYTCMETKKI--HRMIRAEISTEFSTLKR-----------EVISC 92 (273) Q Consensus 26 ~~l~~~~a~~l~~~l~~~~~~~~~vLdlGcGtG~~~~~l~~~~~~--~~v~~~D~s~~~~~~~~-----------~~~~~ 92 (273) T Consensus 138 ~~vQd~sS~l~a~~L~--p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~nv~~~~~ 215 (355) T COG0144 138 IYVQDEASQLPALVLD--PKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRNVIVVNK 215 (355) T ss_pred EEEECHHHHHHHHHCC--CCCCCEEEECCCCCCHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHHHHCCCCEEEEEC T ss_conf 9996778766799719--99979688807999769999999668998769974498789999999999719983489951 Q ss_pred CHHHHC---CCCCCCCHHHH-----HHHHH-------CCCCH----------HHHHHHHHHHHCCCCEEEEEEC Q ss_conf 001101---43335222666-----66742-------22346----------9999999998187870898406 Q gi|254780322|r 93 PLEEIP---SISQSVDLILS-----PLNLH-------IINDT----------LEMFSKINHMLKPGGMFLAAIP 141 (273) Q Consensus 93 d~e~l~---~~~~sfDli~s-----~~~l~-------w~~d~----------~~~l~~~~r~LkpgG~~~~s~~ 141 (273) T Consensus 216 d~~~~~~~~~~~~~fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTC 289 (355) T COG0144 216 DARRLAELLPGGEKFDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTC 289 (355) T ss_pred CCCCCCCCCCCCCCCCEEEECCCCCCCEEECCCCCHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEC T ss_conf 33014311345577785998799987711335812320389999999999999999999984487988999902 |
|
| >COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=96.50 E-value=0.0034 Score=37.93 Aligned_cols=123 Identities=11% Similarity=0.075 Sum_probs=78.5 Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHCCC----------------------- Q ss_conf 776631746220689999999999789863689870999859985899999862697----------------------- Q gi|254780322|r 14 RLRSFRQKDFSVYFLLDRVAKEIAFRLNMINQTFENALELHGITGIVGYTCMETKKI----------------------- 70 (273) Q Consensus 14 ~~ra~~~~~~~~~~l~~~~a~~l~~~l~~~~~~~~~vLdlGcGtG~~~~~l~~~~~~----------------------- 70 (273) T Consensus 162 hkRGyR~~~g~Ap-LketLAaAil~-lagw~-~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~ 238 (381) T COG0116 162 HKRGYRVYDGPAP-LKETLAAAILL-LAGWK-PDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWD 238 (381) T ss_pred HHCCCCCCCCCCC-CHHHHHHHHHH-HCCCC-CCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCHHHHH T ss_conf 1065614688878-56999999999-73999-998341688773479999997344568763322004554321388899 Q ss_pred ---------C-------EEEEECCHHHHHHHHH------------HCCCCCHHHHCCCCCCCCHHHHHHHHH----CCCC Q ss_conf ---------0-------8997200113577531------------100120011014333522266666742----2234 Q gi|254780322|r 71 ---------H-------RMIRAEISTEFSTLKR------------EVISCPLEEIPSISQSVDLILSPLNLH----IIND 118 (273) Q Consensus 71 ---------~-------~v~~~D~s~~~~~~~~------------~~~~~d~e~l~~~~~sfDli~s~~~l~----w~~d 118 (273) T Consensus 239 ~~~~ea~~~a~~~~~~~~~~G~Did~r~i~~Ak~NA~~AGv~d~I~f~~~d~~~l~~~~~~~gvvI~NPPYGeRlg~~~~ 318 (381) T COG0116 239 KLREEAEERARRGKELPIIYGSDIDPRHIEGAKANARAAGVGDLIEFKQADATDLKEPLEEYGVVISNPPYGERLGSEAL 318 (381) T ss_pred HHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHCCCCCEEEEEECCHHHCCCCCCCCCEEEECCCCHHHCCCHHH T ss_conf 99999999865147666589874898999999998997698832899974432166876669989958983011177046 Q ss_pred HHHHH----HHHHHHHCCCCEEEEE Q ss_conf 69999----9999981878708984 Q gi|254780322|r 119 TLEMF----SKINHMLKPGGMFLAA 139 (273) Q Consensus 119 ~~~~l----~~~~r~LkpgG~~~~s 139 (273) T Consensus 319 v~~LY~~fg~~lk~~~~~ws~~v~t 343 (381) T COG0116 319 VAKLYREFGRTLKRLLAGWSRYVFT 343 (381) T ss_pred HHHHHHHHHHHHHHHHCCCCEEEEE T ss_conf 9999999999999872577369997 |
|
| >TIGR00563 rsmB ribosomal RNA small subunit methyltransferase B; InterPro: IPR004573 This family consists of bacterial sequences related to Escherichia coli rsmB, an rRNA SAM-dependent methyltransferase | Back alignment and domain information |
|---|
Probab=96.45 E-value=0.021 Score=33.36 Aligned_cols=111 Identities=16% Similarity=0.129 Sum_probs=77.9 Q ss_pred HHHHHHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHCC-CCEEEEECCHHHHHHHHHH-----------C--CCCC Q ss_conf 999999999978986368987099985998589999986269-7089972001135775311-----------0--0120 Q gi|254780322|r 28 LLDRVAKEIAFRLNMINQTFENALELHGITGIVGYTCMETKK-IHRMIRAEISTEFSTLKRE-----------V--ISCP 93 (273) Q Consensus 28 l~~~~a~~l~~~l~~~~~~~~~vLdlGcGtG~~~~~l~~~~~-~~~v~~~D~s~~~~~~~~~-----------~--~~~d 93 (273) T Consensus 255 vQD~Saq~va~~L~--P~~~E~iLD~CAAPGGKttHI~EL~~~~g~v~a~D~~~~rl~~~~~~~~RLGl~~i~~~~~~~~ 332 (487) T TIGR00563 255 VQDASAQWVATLLD--PKNEETILDACAAPGGKTTHIAELMPDQGQVVALDLHKHRLKRVKENLDRLGLTIIKVEEVDGD 332 (487) T ss_pred HHHHHHHHHHHHHC--CCCCCEEEEEECCCCCHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHHCCEEEEEEEECCC T ss_conf 32168999999738--8988747731148457047677424797208988621257889999998618837887720256 Q ss_pred HHHHCC---CCC----CC-----CHHHHHHH-HHCCCCH----------------HHHHHHHHHHHCCCCEEEEEE Q ss_conf 011014---333----52-----22666667-4222346----------------999999999818787089840 Q gi|254780322|r 94 LEEIPS---ISQ----SV-----DLILSPLN-LHIINDT----------------LEMFSKINHMLKPGGMFLAAI 140 (273) Q Consensus 94 ~e~l~~---~~~----sf-----Dli~s~~~-l~w~~d~----------------~~~l~~~~r~LkpgG~~~~s~ 140 (273) T Consensus 333 ~~~~~~W~~e~~ksaa~fDRiLlDaPCSg~GvirR~PD~kw~~~~~diA~L~~LQ~~iL~aiaP~vK~GGtLvYsT 408 (487) T TIGR00563 333 KAGPKEWLAEVEKSAAQFDRILLDAPCSGTGVIRRHPDIKWLRKPADIARLAELQKEILKAIAPLVKKGGTLVYST 408 (487) T ss_pred CCCCCCCCCCCHHHHHHHCEEEECCCCCCCCCEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEE T ss_conf 7766544452010233314215607877443300178755566856517899999999998856535797588861 |
All, are likely to be functionally equivalent and based on comparison of core motifs would appear to belong to a larger superfamily of S-adenosyl-methionine (AdoMet)-dependent RNA m5C methyltransferases . In E. coli, originally, the reading frame, encoding this protein, was interpreted as two reading frames, fmu and fmv. It has since been renamed, rsmB (Alternate Gene Symbols: rrmB, sun, fmu, fmv, yhdB). The recombinant protein, commonly referred to as Fmu, has been demonstrated to methylate only C967 of the 16S ribosomal RNA and to produce only m5C at that position. . The structure of the E. coli protein (Fmu) has been determined . Fmu contains three subdomains which share structural homology to DNA m5C methyltransferases and two RNA binding protein families. The N-terminal sequence of Fmu shares homology to another (noncatalytic) RNA binding protein, e.g. the ribosomal RNA antiterminator protein NusB (IPR011605 from INTERPRO). The catalytic lobe of Fmu, N1 domain, comprises the conserved core identified in all of the putative RNA m5C MTase sequences. Although the N1 domain is structurally homologous to known RNA binding proteins, there is no clear sequence motif that defines its role in RNA binding and recognition. At the functional centre of the catalytic lobe is the MTase domain of Fmu (residues 232-429), which adopts a fold typical of known AdoMet-dependent methyltransferases. In spite of the lack of a conserved RNA binding motif in the N1 domain, the close association of the N1 and MTase domains suggest that any RNA bound in the active site of the MTase domain is likely to interact with the N1 domain. ; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing. |
| >pfam05185 PRMT5 PRMT5 arginine-N-methyltransferase | Back alignment and domain information |
|---|
Probab=95.83 E-value=0.084 Score=29.85 Aligned_cols=111 Identities=18% Similarity=0.174 Sum_probs=75.7 Q ss_pred HHHHHHHHHHHHHHHHHHCCC--CCCCEEEECCCCCHHHHHHHH----HCCCCEEEEECCHHHHHH--HHH--------- Q ss_conf 068999999999978986368--987099985998589999986----269708997200113577--531--------- Q gi|254780322|r 25 VYFLLDRVAKEIAFRLNMINQ--TFENALELHGITGIVGYTCME----TKKIHRMIRAEISTEFST--LKR--------- 87 (273) Q Consensus 25 ~~~l~~~~a~~l~~~l~~~~~--~~~~vLdlGcGtG~~~~~l~~----~~~~~~v~~~D~s~~~~~--~~~--------- 87 (273) T Consensus 163 Y~~Ye~AI~~aL~D~~~~~~~~~~~~vI~VvGAGRGPLV~~~l~A~~~~~~~v~i~AVEKNpnA~vtL~~r~n~~~W~~~ 242 (447) T pfam05185 163 YDQYERAIRKALLDWVPEKKKTSGTLVILVVGAGRGPLVDRALRAAEETGRKVKIYAVEKNPNAVVTLQKRVNFEEWGDK 242 (447) T ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHHHHHHHCCCC T ss_conf 99999999999986330013677756999985896489999999999819966999995687799999998505431780 Q ss_pred -HCCCCCHHHHCCCCCCCCHHHHHHHHHCCCCH---HHHHHHHHHHHCCCCEEE Q ss_conf -10012001101433352226666674222346---999999999818787089 Q gi|254780322|r 88 -EVISCPLEEIPSISQSVDLILSPLNLHIINDT---LEMFSKINHMLKPGGMFL 137 (273) Q Consensus 88 -~~~~~d~e~l~~~~~sfDli~s~~~l~w~~d~---~~~l~~~~r~LkpgG~~~ 137 (273) T Consensus 243 V~ii~~DMR~w~~p-~k~Di~VSEL-LGSFGDNELSPECLdg~q~~lk~~gIsI 294 (447) T pfam05185 243 VTLISSDMREWKGP-EKADILVSEL-LGSFGDNELSPECLDGAQRFLKPDGISI 294 (447) T ss_pred EEEEECCHHCCCCC-CCCCEEEEEC-CCCCCCCCCCHHHHHHHHHHCCCCCEEE T ss_conf 69990800057998-7735897521-1666665579778778997468984682 |
The human homologue of yeast Skb1 (Shk1 kinase-binding protein 1) is PRMT5, an arginine-N-methyltransferase. These proteins appear to be key mitotic regulators. They play a role in Jak signalling in higher eukaryotes. |
| >TIGR00692 tdh L-threonine 3-dehydrogenase; InterPro: IPR004627 L-threonine 3-dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=95.31 E-value=0.053 Score=30.98 Aligned_cols=109 Identities=12% Similarity=0.141 Sum_probs=78.1 Q ss_pred CCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCC-CHHHHHHHHHCCCCEEEEECCHHHHHHHHHHC-----CC---C Q ss_conf 622068999999999978986368987099985998-58999998626970899720011357753110-----01---2 Q gi|254780322|r 22 DFSVYFLLDRVAKEIAFRLNMINQTFENALELHGIT-GIVGYTCMETKKIHRMIRAEISTEFSTLKREV-----IS---C 92 (273) Q Consensus 22 ~~~~~~l~~~~a~~l~~~l~~~~~~~~~vLdlGcGt-G~~~~~l~~~~~~~~v~~~D~s~~~~~~~~~~-----~~---~ 92 (273) T Consensus 139 p~~A~-iqePlGNAVhTvL~-~~~~G~~vlv~GaGPiGlma~AVAKa~GA~~Vi~~d~neyRleLAkk~Gat~~vn~~kE 216 (341) T TIGR00692 139 PELAA-IQEPLGNAVHTVLE-SDLAGEDVLVIGAGPIGLMAVAVAKAAGARNVIVIDKNEYRLELAKKMGATRVVNVAKE 216 (341) T ss_pred CCHHH-HHCCCCHHHHHHHC-CCCCCCCEEEECCCHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHCCCCEEEECCCC T ss_conf 01586-61541104446525-77688718998577478999999877278405996586479999987098658701014 Q ss_pred C----HHHHCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHCCCCEEEEE Q ss_conf 0----0110143335222666667422234699999999981878708984 Q gi|254780322|r 93 P----LEEIPSISQSVDLILSPLNLHIINDTLEMFSKINHMLKPGGMFLAA 139 (273) Q Consensus 93 d----~e~l~~~~~sfDli~s~~~l~w~~d~~~~l~~~~r~LkpgG~~~~s 139 (273) T Consensus 217 d~~k~v~~lt~-geG~Dv~lEmSG------aP~A~~~gL~~~~~gGR~~~L 260 (341) T TIGR00692 217 DLVKVVAELTS-GEGVDVVLEMSG------APKALEQGLDAVANGGRVALL 260 (341) T ss_pred CHHHHHHHHCC-CCCEEEEEECCC------CCHHHHHHHHHHCCCCEEEEC T ss_conf 76898884038-896479986489------917999999985068808981 |
1.1.103 from EC) is a tetrameric, zinc-binding, NAD-dependent enzyme of threonine catabolism. It catalyses the conversion of L-threonine and NAD+ to L-2-amino-3-oxobutanoate and NADH. In Escherichia coli His-90 modulates substrate specificity and is believed part of the active site. Closely related proteins include sorbitol dehydrogenase, xylitol dehydrogenase, and benzyl alcohol dehydrogenase. Eukaryotic examples of this enzyme have been demonstrated experimentally but are not detected by this HMM. ; GO: 0008270 zinc ion binding, 0008743 L-threonine 3-dehydrogenase activity, 0006567 threonine catabolic process. |
| >COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=95.18 E-value=0.13 Score=28.64 Aligned_cols=118 Identities=15% Similarity=0.066 Sum_probs=71.6 Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHCC----CCEEEEECCHHHHHHHHHHC----------- Q ss_conf 068999999999978986368987099985998589999986269----70899720011357753110----------- Q gi|254780322|r 25 VYFLLDRVAKEIAFRLNMINQTFENALELHGITGIVGYTCMETKK----IHRMIRAEISTEFSTLKREV----------- 89 (273) Q Consensus 25 ~~~l~~~~a~~l~~~l~~~~~~~~~vLdlGcGtG~~~~~l~~~~~----~~~v~~~D~s~~~~~~~~~~----------- 89 (273) T Consensus 167 EfyTP~~v~~liv~~l~~--~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi~~~~~ 244 (489) T COG0286 167 EFYTPREVSELIVELLDP--EPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGIEGDAN 244 (489) T ss_pred CCCCHHHHHHHHHHHCCC--CCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEECCHHHHHHHHHHHHHHCCCCCCC T ss_conf 605879999999997577--656523473354037999999999751555049989566889999996116627874223 Q ss_pred -CCCCH-HHHCC----CCCCCCHHHHHHH---HHCCCCH----------------------HHHHHHHHHHHCCCCEEEE Q ss_conf -01200-11014----3335222666667---4222346----------------------9999999998187870898 Q gi|254780322|r 90 -ISCPL-EEIPS----ISQSVDLILSPLN---LHIINDT----------------------LEMFSKINHMLKPGGMFLA 138 (273) Q Consensus 90 -~~~d~-e~l~~----~~~sfDli~s~~~---l~w~~d~----------------------~~~l~~~~r~LkpgG~~~~ 138 (273) T Consensus 245 i~~~dtl~~~~~~~~~~~~~~D~viaNPPf~~~~w~~~~~~~~~~~~~~~~g~~~~~~~~d~afi~h~~~~l~~~g~aai 324 (489) T COG0286 245 IRHGDTLSNPKHDDKDDKGKFDFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSADLAFLQHILYKLKPGGRAAI 324 (489) T ss_pred CCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEE T ss_conf 43344236873323466555016865799554443443310024320002577888952789999999997186770589 Q ss_pred EECCCC Q ss_conf 406867 Q gi|254780322|r 139 AIPGIG 144 (273) Q Consensus 139 s~~~~~ 144 (273) T Consensus 325 vl~~gv 330 (489) T COG0286 325 VLPDGV 330 (489) T ss_pred EECCCC T ss_conf 925886 |
|
| >KOG0822 consensus | Back alignment and domain information |
|---|
Probab=95.01 E-value=0.22 Score=27.45 Aligned_cols=113 Identities=19% Similarity=0.209 Sum_probs=78.4 Q ss_pred CHHHHHHHHHHHHHHHHHHCCC-CCCCEEEECCCCCHHHHHHHH----HCCCCEEEEECCHHHHHHH--HH--------- Q ss_conf 2068999999999978986368-987099985998589999986----2697089972001135775--31--------- Q gi|254780322|r 24 SVYFLLDRVAKEIAFRLNMINQ-TFENALELHGITGIVGYTCME----TKKIHRMIRAEISTEFSTL--KR--------- 87 (273) Q Consensus 24 ~~~~l~~~~a~~l~~~l~~~~~-~~~~vLdlGcGtG~~~~~l~~----~~~~~~v~~~D~s~~~~~~--~~--------- 87 (273) T Consensus 344 KY~~Yq~Ai~~AL~Drvpd~~a~~~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~~n~~~W~~~V 423 (649) T KOG0822 344 KYDQYQQAILKALLDRVPDESAKTTTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQNRNFECWDNRV 423 (649) T ss_pred HHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHCHHHHCCEE T ss_conf 79999999999997547501147328999963887607889999998724715799993385440424542436546816 Q ss_pred HCCCCCHHHHCCCCCCCCHHHHHHHHHCCCCH---HHHHHHHHHHHCCCCEEE Q ss_conf 10012001101433352226666674222346---999999999818787089 Q gi|254780322|r 88 EVISCPLEEIPSISQSVDLILSPLNLHIINDT---LEMFSKINHMLKPGGMFL 137 (273) Q Consensus 88 ~~~~~d~e~l~~~~~sfDli~s~~~l~w~~d~---~~~l~~~~r~LkpgG~~~ 137 (273) T Consensus 424 tii~~DMR~w~ap~eq~DI~VSEL-LGSFGDNELSPECLDG~q~fLkpdgIsI 475 (649) T KOG0822 424 TIISSDMRKWNAPREQADIIVSEL-LGSFGDNELSPECLDGAQKFLKPDGISI 475 (649) T ss_pred EEEECCCCCCCCCHHHCCCHHHHH-HCCCCCCCCCHHHHHHHHHHCCCCCEEC T ss_conf 999343124688444212039976-4224676679778777885158885575 |
|
| >COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=94.46 E-value=0.15 Score=28.36 Aligned_cols=110 Identities=20% Similarity=0.150 Sum_probs=70.4 Q ss_pred HHHHHHHHHHHHHCC-CCCCCEEEECCCCCHHHHHHHHHCCCCEEEEECCHHHHHHH------HHH---CCCCCHHHHC- Q ss_conf 999999997898636-89870999859985899999862697089972001135775------311---0012001101- Q gi|254780322|r 30 DRVAKEIAFRLNMIN-QTFENALELHGITGIVGYTCMETKKIHRMIRAEISTEFSTL------KRE---VISCPLEEIP- 98 (273) Q Consensus 30 ~~~a~~l~~~l~~~~-~~~~~vLdlGcGtG~~~~~l~~~~~~~~v~~~D~s~~~~~~------~~~---~~~~d~e~l~- 98 (273) T Consensus 60 KLaAa-Il~Gl~~~pi~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~R~Ni~PIL~DA~~P~~ 138 (231) T COG1889 60 KLAAA-ILKGLKNFPIKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEKRPNIIPILEDARKPEK 138 (231) T ss_pred HHHHH-HHCCCCCCCCCCCCEEEEEECCCCCCHHHHHHCCCCCCEEEEEECCHHHHHHHHHHHHCCCCEEEECCCCCCHH T ss_conf 77999-97370027769998789950367985767776047870899996444699999998747874002013688377 Q ss_pred --CCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHCCCCEEEEEECC Q ss_conf --43335222666667422234699999999981878708984068 Q gi|254780322|r 99 --SISQSVDLILSPLNLHIINDTLEMFSKINHMLKPGGMFLAAIPG 142 (273) Q Consensus 99 --~~~~sfDli~s~~~l~w~~d~~~~l~~~~r~LkpgG~~~~s~~~ 142 (273) T Consensus 139 Y~~~Ve~VDviy~DVAQ--p~Qa~I~~~Na~~FLk~~G~~~i~iKA 182 (231) T COG1889 139 YRHLVEKVDVIYQDVAQ--PNQAEILADNAEFFLKKGGYVVIAIKA 182 (231) T ss_pred HHHHCCCCCEEEEECCC--CHHHHHHHHHHHHHCCCCCEEEEEEEE T ss_conf 65312454389983688--107899998899732169739999985 |
|
| >PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.95 E-value=7.9e-28 Score=181.65 Aligned_cols=144 Identities=22% Similarity=0.337 Sum_probs=117.7 Q ss_pred CCCCCEEEECCCCCHHHHHHHHH-CCCCEEEEECCHHHHHHHHH-----------HCCCCCHHHHCCCCCCCCHHHHHHH Q ss_conf 89870999859985899999862-69708997200113577531-----------1001200110143335222666667 Q gi|254780322|r 45 QTFENALELHGITGIVGYTCMET-KKIHRMIRAEISTEFSTLKR-----------EVISCPLEEIPSISQSVDLILSPLN 112 (273) Q Consensus 45 ~~~~~vLdlGcGtG~~~~~l~~~-~~~~~v~~~D~s~~~~~~~~-----------~~~~~d~e~l~~~~~sfDli~s~~~ 112 (273) T Consensus 72 ~pGe~VLDLGcG~G~d~~~aA~~VG~~G~ViGVD~s~~ML~~Ar~~a~~~G~~NVeF~~Gdae~LPl~D~SfDvViSncV 151 (258) T PRK11873 72 KPGETVLDLGSGAGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEALPVADGSVDVIISNCV 151 (258) T ss_pred CCCCEEEEECCCCCHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCEEEEEECCE T ss_conf 99998999478877759999998699977999859999999999999975997559999555313689883519988246 Q ss_pred HHCCCCHHHHHHHHHHHHCCCCEEEEEECCCC-CCHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCCEEE Q ss_conf 42223469999999998187870898406867-63347788998754542686642167459999999998508985467 Q gi|254780322|r 113 LHIINDTLEMFSKINHMLKPGGMFLAAIPGIG-TLHELRKALLKAETELTGGASPRVIPFMDIKSAGTLMEKSGFISPII 191 (273) Q Consensus 113 l~w~~d~~~~l~~~~r~LkpgG~~~~s~~~~~-~~~el~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~agf~~~~~ 191 (273) T Consensus 152 lnl~pDk~~vl~E~~RVLKPGGRl~ISDiv~~~~lP~~---~r~-d~~l~~~C---iaGA~~~~~~~~~l~~aGF~~i~i 224 (258) T PRK11873 152 INLSPDKERVFREAFRVLKPGGRFAISDVVLTGELPEE---LRN-DAALYAGC---VAGALSVEEYLAMLAEAGFVDITI 224 (258) T ss_pred EECCCCHHHHHHHHHHHCCCCCEEEEEEEECCCCCCHH---HHH-CHHHHHCC---CCCCCCHHHHHHHHHHCCCCCEEE T ss_conf 76079879999999996288978999974127779999---985-98987312---036685999999999769983299 Q ss_pred EEEE Q ss_conf 7313 Q gi|254780322|r 192 DQDT 195 (273) Q Consensus 192 ~~~~ 195 (273) T Consensus 225 ~~~~ 228 (258) T PRK11873 225 EPKR 228 (258) T ss_pred EECH T ss_conf 8553 |
|
| >smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes | Back alignment and domain information |
|---|
Probab=99.92 E-value=5.9e-25 Score=164.91 Aligned_cols=130 Identities=18% Similarity=0.166 Sum_probs=109.5 Q ss_pred CCEEEECCCCCHHHHHHHHHCCCCEEEEECCHHHHHHHHHH------------CCCCCHHHHCCCCCCCCHHHHHHHHHC Q ss_conf 70999859985899999862697089972001135775311------------001200110143335222666667422 Q gi|254780322|r 48 ENALELHGITGIVGYTCMETKKIHRMIRAEISTEFSTLKRE------------VISCPLEEIPSISQSVDLILSPLNLHI 115 (273) Q Consensus 48 ~~vLdlGcGtG~~~~~l~~~~~~~~v~~~D~s~~~~~~~~~------------~~~~d~e~l~~~~~sfDli~s~~~l~w 115 (273) T Consensus 1 krVLDiGCG~G~~~~~LA~~~p~~~v~GvDiS~~~ie~Ar~r~~~~gl~~rv~~~~~Da~~lpf~d-~FD~V~s~evl~H 79 (224) T smart00828 1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDPFPD-TYDLVFGFEVIHH 79 (224) T ss_pred CEEEEEECCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCCCCCCEEEEECCHHCCCCCC-CCCEEEHHHHHHC T ss_conf 908998366888899999977998899997999999999999997299865147852110399999-8356768535765 Q ss_pred CCCHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCCEEE Q ss_conf 2346999999999818787089840686763347788998754542686642167459999999998508985467 Q gi|254780322|r 116 INDTLEMFSKINHMLKPGGMFLAAIPGIGTLHELRKALLKAETELTGGASPRVIPFMDIKSAGTLMEKSGFISPII 191 (273) Q Consensus 116 ~~d~~~~l~~~~r~LkpgG~~~~s~~~~~~~~el~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~agf~~~~~ 191 (273) T Consensus 80 i~D~~~~l~ei~RvLKPGG~lviaD~~~n~~~~i~~-------------~~~~~~~~t~~eW~~ll~~~~l~~~~~ 142 (224) T smart00828 80 IKDKMDLFSNISRHLKDGGHLVLADFIANLLSAIEH-------------EETTSYLVTREEWAELLARNNLRVVEG 142 (224) T ss_pred CCCHHHHHHHHHHHCCCCEEEEEEEEECCCCCCCCC-------------CCCCCCCCCHHHHHHHHHHCCCEEEEE T ss_conf 399999999999871798499999853378887778-------------763002478999999997678536652 |
|
| >COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.5e-18 Score=126.24 Aligned_cols=141 Identities=13% Similarity=0.142 Sum_probs=105.7 Q ss_pred CCCCCEEEECCCCCHHHHHHHHHCCCCEEEEECCHHHHHHHHH----------HCCCCCHHHHCCCCCCCCHHHHHHHHH Q ss_conf 8987099985998589999986269708997200113577531----------100120011014333522266666742 Q gi|254780322|r 45 QTFENALELHGITGIVGYTCMETKKIHRMIRAEISTEFSTLKR----------EVISCPLEEIPSISQSVDLILSPLNLH 114 (273) Q Consensus 45 ~~~~~vLdlGcGtG~~~~~l~~~~~~~~v~~~D~s~~~~~~~~----------~~~~~d~e~l~~~~~sfDli~s~~~l~ 114 (273) T Consensus 58 l~g~~vLDvGCGgG~Lse~mAr~G--a~VtgiD~se~~I~~Ak~ha~e~gv~i~y~~~~~edl~~~~~~FDvV~cmEVlE 135 (243) T COG2227 58 LPGLRVLDVGCGGGILSEPLARLG--ASVTGIDASEKPIEVAKLHALESGVNIDYRQATVEDLASAGGQFDVVTCMEVLE 135 (243) T ss_pred CCCCEEEEECCCCCHHHHHHHHCC--CEEEEECCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCEEEEHHHHH T ss_conf 777708874588328649999779--946974387677899987544246322522332999972489744897735877 Q ss_pred CCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHH--HHCCCCCCCCCCCCHHHHHHHHHHCCCCC Q ss_conf 223469999999998187870898406867633477889987545--42686642167459999999998508985 Q gi|254780322|r 115 IINDTLEMFSKINHMLKPGGMFLAAIPGIGTLHELRKALLKAETE--LTGGASPRVIPFMDIKSAGTLMEKSGFIS 188 (273) Q Consensus 115 w~~d~~~~l~~~~r~LkpgG~~~~s~~~~~~~~el~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~ll~~agf~~ 188 (273) T Consensus 136 Hv~dp~~~~~~c~~lvkP~G~lf~STin-rt~ka~~~~i~~ae~vl~~vP~gTH~~~k~irp~El~~~~~~~~~~~ 210 (243) T COG2227 136 HVPDPESFLRACAKLVKPGGILFLSTIN-RTLKAYLLAIIGAEYVLRIVPKGTHDYRKFIKPAELIRWLLGANLKI 210 (243) T ss_pred CCCCHHHHHHHHHHHCCCCCEEEEECCC-CCHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCHHHHHHHCCCCCCEE T ss_conf 1699999999999862999289994201-38899999999899998745886335888619899987323579358 |
|
| >pfam07021 MetW Methionine biosynthesis protein MetW | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.5e-17 Score=120.45 Aligned_cols=138 Identities=16% Similarity=0.122 Sum_probs=103.6 Q ss_pred CCCCCEEEECCCCCHHHHHHHHHCCCCEEEEECCHHHHHHHHH----HCCCCCHHH--HCCCCCCCCHHHHHHHHHCCCC Q ss_conf 8987099985998589999986269708997200113577531----100120011--0143335222666667422234 Q gi|254780322|r 45 QTFENALELHGITGIVGYTCMETKKIHRMIRAEISTEFSTLKR----EVISCPLEE--IPSISQSVDLILSPLNLHIIND 118 (273) Q Consensus 45 ~~~~~vLdlGcGtG~~~~~l~~~~~~~~v~~~D~s~~~~~~~~----~~~~~d~e~--l~~~~~sfDli~s~~~l~w~~d 118 (273) T Consensus 12 ~~~srVLDlGCG~G~ll~~L~~~-k~v~~~GvEid~~~v~~a~~kg~~Vi~~D~d~~l~~f~d~sFD~VIls~vLqhl~~ 90 (193) T pfam07021 12 PPGSRVLDLGCGDGSLLYLLQEE-KQVDGRGIELDAAGVAECVAKGLSVIQGDADKGLEHFPDKSFDYVILSQTLQATRN 90 (193) T ss_pred CCCCEEEEECCCCCHHHHHHHHC-CCCCEEEECCCHHHHHHHHHCCCCEECCCHHHCHHHCCCCCCCEEEHHHHHHHHCC T ss_conf 89698998368898999999876-69876983389999999986479545077445974577678037869879987528 Q ss_pred HHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHH-HHH-------HCC-CCCCCCCCCCHHHHHHHHHHCCCCCE Q ss_conf 699999999981878708984068676334778899875-454-------268-66421674599999999985089854 Q gi|254780322|r 119 TLEMFSKINHMLKPGGMFLAAIPGIGTLHELRKALLKAE-TEL-------TGG-ASPRVIPFMDIKSAGTLMEKSGFISP 189 (273) Q Consensus 119 ~~~~l~~~~r~LkpgG~~~~s~~~~~~~~el~~~~~~a~-~~~-------~~~-~~~~~~~~~~~~~~~~ll~~agf~~~ 189 (273) T Consensus 91 P~~vL~EmlRV---gk~~IVSfPN---f~hw~~R~~ll~~GrmPvt~~lp~~WydTpn-ih~~Ti~DFe~lc~~~~i~I~ 163 (193) T pfam07021 91 PREVLDELLRI---GRRAIVSFPN---FGHWRVRWSLLSRGRMPVTDLLPYTWYDTPN-IHFCTIRDFEELCEELNLKVE 163 (193) T ss_pred CHHHHHHHHHH---CCEEEEEECC---HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC-CCCCCHHHHHHHHHHCCCEEE T ss_conf 19999998512---6869999436---1479999999947875558999976148998-474459999999998899899 Q ss_pred E Q ss_conf 6 Q gi|254780322|r 190 I 190 (273) Q Consensus 190 ~ 190 (273) T Consensus 164 ~ 164 (193) T pfam07021 164 D 164 (193) T ss_pred E T ss_conf 9 |
This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In Pseudomonas putida, as in gram-positive bacteria and certain fungi, the second and third steps are a direct sulfhydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells. |
| >KOG1270 consensus | Back alignment and domain information |
|---|
Probab=99.71 E-value=6e-17 Score=118.21 Aligned_cols=137 Identities=14% Similarity=0.193 Sum_probs=102.4 Q ss_pred CCEEEECCCCCHHHHHHHHHCCCCEEEEECCHHHHHHHHHH-----------------CCCCCHHHHCCCCCCCCHHHHH Q ss_conf 70999859985899999862697089972001135775311-----------------0012001101433352226666 Q gi|254780322|r 48 ENALELHGITGIVGYTCMETKKIHRMIRAEISTEFSTLKRE-----------------VISCPLEEIPSISQSVDLILSP 110 (273) Q Consensus 48 ~~vLdlGcGtG~~~~~l~~~~~~~~v~~~D~s~~~~~~~~~-----------------~~~~d~e~l~~~~~sfDli~s~ 110 (273) T Consensus 91 ~~ilDvGCGgGLLSepLArlg--a~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~~---~~fDaVvcs 165 (282) T KOG1270 91 MKILDVGCGGGLLSEPLARLG--AQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGLT---GKFDAVVCS 165 (282) T ss_pred CEEEEECCCCCCCCHHHHHHC--CEEEEECCHHHHHHHHHHHHHCCCHHCCCCCEEEEHHHCCHHHCC---CCCCEEEEH T ss_conf 647872367550232357508--856852655999999987510490330564146302015332145---656454419 Q ss_pred HHHHCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHH--HCCCCCCCCCCCCHHHHHHHHHHCCCCC Q ss_conf 67422234699999999981878708984068676334778899875454--2686642167459999999998508985 Q gi|254780322|r 111 LNLHIINDTLEMFSKINHMLKPGGMFLAAIPGIGTLHELRKALLKAETEL--TGGASPRVIPFMDIKSAGTLMEKSGFIS 188 (273) Q Consensus 111 ~~l~w~~d~~~~l~~~~r~LkpgG~~~~s~~~~~~~~el~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~ll~~agf~~ 188 (273) T Consensus 166 evleHV~dp~~~l~~l~~~lkP~G~lfittinrt~lS-~~~~i~~~E~vl~ivp~Gth~~ekfi~p~e~~~~l~~~~~~v 244 (282) T KOG1270 166 EVLEHVKDPQEFLNCLSALLKPNGRLFITTINRTILS-FAGTIFLAEIVLRIVPKGTHTWEKFINPEELTSILNANGAQV 244 (282) T ss_pred HHHHHHHCHHHHHHHHHHHHCCCCCEEEEEHHHHHHH-HHCCCCHHHHHHHHCCCCCCCHHHCCCHHHHHHHHHHCCCCH T ss_conf 8999874789999999998488982586411233777-622112999988645888757787089999999998638534 Q ss_pred EE Q ss_conf 46 Q gi|254780322|r 189 PI 190 (273) Q Consensus 189 ~~ 190 (273) T Consensus 245 ~~ 246 (282) T KOG1270 245 ND 246 (282) T ss_pred HH T ss_conf 31 |
|
| >KOG4300 consensus | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.1e-16 Score=116.77 Aligned_cols=146 Identities=16% Similarity=0.183 Sum_probs=109.8 Q ss_pred CCEEEECCCCCHHHHHHHHHCCCCEEEEECCHHHHHHHHH------------HCCCCCHHHHC-CCCCCCCHHHHHHHHH Q ss_conf 7099985998589999986269708997200113577531------------10012001101-4333522266666742 Q gi|254780322|r 48 ENALELHGITGIVGYTCMETKKIHRMIRAEISTEFSTLKR------------EVISCPLEEIP-SISQSVDLILSPLNLH 114 (273) Q Consensus 48 ~~vLdlGcGtG~~~~~l~~~~~~~~v~~~D~s~~~~~~~~------------~~~~~d~e~l~-~~~~sfDli~s~~~l~ 114 (273) T Consensus 78 ~~vLEvgcGtG~Nfkfy-~~~p~~svt~lDpn~~mee~~~ks~~E~k~~~~~~fvva~ge~l~~l~d~s~DtVV~TlvLC 156 (252) T KOG4300 78 GDVLEVGCGTGANFKFY-PWKPINSVTCLDPNEKMEEIADKSAAEKKPLQVERFVVADGENLPQLADGSYDTVVCTLVLC 156 (252) T ss_pred CCEEEECCCCCCCCCCC-CCCCCCEEEEECCCHHHHHHHHHHHHHCCCCCEEEEEEECHHCCCCCCCCCEEEEEEEEEEE T ss_conf 13699614688885355-57888568986784879999998886425720577785052107421367711577788872 Q ss_pred CCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEEEE Q ss_conf 22346999999999818787089840686763347788998754542686642167459999999998508985467731 Q gi|254780322|r 115 IINDTLEMFSKINHMLKPGGMFLAAIPGIGTLHELRKALLKAETELTGGASPRVIPFMDIKSAGTLMEKSGFISPIIDQD 194 (273) Q Consensus 115 w~~d~~~~l~~~~r~LkpgG~~~~s~~~~~~~~el~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~agf~~~~~~~~ 194 (273) T Consensus 157 Sve~~~k~L~e~~rlLRpgG~iifiEHva~~y~~~n~i~q~v~ep~-~-~~~~dGC~-ltrd~~e~Leda~f~~~~~kr~ 233 (252) T KOG4300 157 SVEDPVKQLNEVRRLLRPGGRIIFIEHVAGEYGFWNRILQQVAEPL-W-HLESDGCV-LTRDTGELLEDAEFSIDSCKRF 233 (252) T ss_pred CCCCHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHCHH-H-HEECCCEE-EEHHHHHHHHHCCCCCCHHHCC T ss_conf 0577999999988750889589997212442108999999874556-6-50234458-7645777755330441111002 Q ss_pred EEE Q ss_conf 368 Q gi|254780322|r 195 TYT 197 (273) Q Consensus 195 ~~~ 197 (273) T Consensus 234 ~~~ 236 (252) T KOG4300 234 NFG 236 (252) T ss_pred CCC T ss_conf 688 |
|
| >COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.61 E-value=3.4e-15 Score=107.95 Aligned_cols=148 Identities=20% Similarity=0.233 Sum_probs=109.0 Q ss_pred HHHHHHHCCC-CCCCEEEECCCCCHHHHHHHHHCCCCEEEEECCHHHHHHHHHHC------CCCCHH-HHC-CCCCCCCH Q ss_conf 9978986368-98709998599858999998626970899720011357753110------012001-101-43335222 Q gi|254780322|r 36 IAFRLNMINQ-TFENALELHGITGIVGYTCMETKKIHRMIRAEISTEFSTLKREV------ISCPLE-EIP-SISQSVDL 106 (273) Q Consensus 36 l~~~l~~~~~-~~~~vLdlGcGtG~~~~~l~~~~~~~~v~~~D~s~~~~~~~~~~------~~~d~e-~l~-~~~~sfDl 106 (273) T Consensus 114 l~emI~~~~~g~F~~~lDLGCGTGL~G~~lR~~a--~~ltGvDiS~nMl~kA~eKg~YD~L~~Aea~~Fl~~~~~er~DL 191 (287) T COG4976 114 LAEMIGKADLGPFRRMLDLGCGTGLTGEALRDMA--DRLTGVDISENMLAKAHEKGLYDTLYVAEAVLFLEDLTQERFDL 191 (287) T ss_pred HHHHHHHCCCCCCCEEEECCCCCCCCCHHHHHHH--HHCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCC T ss_conf 9999975157762023442667676627678888--65127762699999988624157888989998755226776430 Q ss_pred HHHHHHHHCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCC Q ss_conf 66666742223469999999998187870898406867633477889987545426866421674599999999985089 Q gi|254780322|r 107 ILSPLNLHIINDTLEMFSKINHMLKPGGMFLAAIPGIGTLHELRKALLKAETELTGGASPRVIPFMDIKSAGTLMEKSGF 186 (273) Q Consensus 107 i~s~~~l~w~~d~~~~l~~~~r~LkpgG~~~~s~~~~~~~~el~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~agf 186 (273) T Consensus 192 i~AaDVl~YlG~Le~~~~~aa~~L~~gGlfaFSvE~l~~~~~-----------f~l~ps~Ry--AH~~~YVr~~l~~~Gl 258 (287) T COG4976 192 IVAADVLPYLGALEGLFAGAAGLLAPGGLFAFSVETLPDDGG-----------FVLGPSQRY--AHSESYVRALLAASGL 258 (287) T ss_pred HHHHHHHHHHCCHHHHHHHHHHHCCCCCEEEEEECCCCCCCC-----------EECCHHHHH--CCCHHHHHHHHHHCCC T ss_conf 124567886400346899999855898648987231677787-----------321646532--2522899999974596 Q ss_pred CCEEEEEEEEEE Q ss_conf 854677313688 Q gi|254780322|r 187 ISPIIDQDTYTV 198 (273) Q Consensus 187 ~~~~~~~~~~~~ 198 (273) T Consensus 259 ~~i~~~~ttiR~ 270 (287) T COG4976 259 EVIAIEDTTIRR 270 (287) T ss_pred EEEEEECCCCHH T ss_conf 278742430033 |
|
| >pfam08003 Methyltransf_9 Protein of unknown function (DUF1698) | Back alignment and domain information |
|---|
Probab=99.56 E-value=2.1e-14 Score=103.31 Aligned_cols=152 Identities=14% Similarity=0.119 Sum_probs=107.6 Q ss_pred HHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHCCCCEEEEECCHHHHHHH--HH-H---------CCCCCHHHHCCCCCC Q ss_conf 99789863689870999859985899999862697089972001135775--31-1---------001200110143335 Q gi|254780322|r 36 IAFRLNMINQTFENALELHGITGIVGYTCMETKKIHRMIRAEISTEFSTL--KR-E---------VISCPLEEIPSISQS 103 (273) Q Consensus 36 l~~~l~~~~~~~~~vLdlGcGtG~~~~~l~~~~~~~~v~~~D~s~~~~~~--~~-~---------~~~~d~e~l~~~~~s 103 (273) T Consensus 107 l~~~i~~--L~gk~VlDVGcgNGYy~~RMlg~ga-~~viGiDPs~lf~~QF~ai~~~~~~~~~~~~lPlg~E~lp~~-~~ 182 (315) T pfam08003 107 VLPHLSP--LKGRTILDVGCGNGYHMWRMLGEGA-ALVVGIDPSELFLCQFEAVRKLLGNDQRAHLLPLGIEQLPAL-EA 182 (315) T ss_pred HHHHHCC--CCCCEEEECCCCCHHHHHHHHHCCC-CEEEEECCHHHHHHHHHHHHHHCCCCCCEEEECCCHHHCCCC-CC T ss_conf 8734224--2689887517786499998622399-879988981999999999999708987568853676548663-42 Q ss_pred CCHHHHHHHHHCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHH Q ss_conf 22266666742223469999999998187870898406867633477889987545426866421674599999999985 Q gi|254780322|r 104 VDLILSPLNLHIINDTLEMFSKINHMLKPGGMFLAAIPGIGTLHELRKALLKAETELTGGASPRVIPFMDIKSAGTLMEK 183 (273) Q Consensus 104 fDli~s~~~l~w~~d~~~~l~~~~r~LkpgG~~~~s~~~~~~~~el~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~ 183 (273) T Consensus 183 FDtVFsMGVLYHrrsP~~hL~~Lk~~L~~gGeLvLETlvi~gd~~~~L----~P~~rYA-~M~NV~fiPS~~~L~~Wl~r 257 (315) T pfam08003 183 FDTVFSMGVLYHRRSPLDHLLQLKDQLVKGGELVLETLVIEGDENTVL----VPGDRYA-QMRNVYFIPSAAALKNWLEK 257 (315) T ss_pred CCEEEEEEEEECCCCHHHHHHHHHHHCCCCCEEEEEEEEECCCCCEEE----CCCCCCC-CCCCCEECCCHHHHHHHHHH T ss_conf 155776544432689899999999852879789999877659887256----7885414-79875454788999999998 Q ss_pred CCCCCEEEEEEEE Q ss_conf 0898546773136 Q gi|254780322|r 184 SGFISPIIDQDTY 196 (273) Q Consensus 184 agf~~~~~~~~~~ 196 (273) T Consensus 258 ~GF~~i~~vd~~~ 270 (315) T pfam08003 258 CGFVDVRIVDVSV 270 (315) T ss_pred CCCCEEEEEECCC T ss_conf 5993278887787 |
This family contains many hypothetical proteins. It also includes two putative methyltransferase proteins. |
| >TIGR02081 metW methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins | Back alignment and domain information |
|---|
Probab=99.49 E-value=2.3e-13 Score=97.28 Aligned_cols=144 Identities=17% Similarity=0.143 Sum_probs=100.2 Q ss_pred HHHCCCCCCCEEEECCCCCHHHHHHHHHC-CCC------EEEEECCHHHHHHHH----HHCCCCCHHH-H-CCCCCCCCH Q ss_conf 98636898709998599858999998626-970------899720011357753----1100120011-0-143335222 Q gi|254780322|r 40 LNMINQTFENALELHGITGIVGYTCMETK-KIH------RMIRAEISTEFSTLK----REVISCPLEE-I-PSISQSVDL 106 (273) Q Consensus 40 l~~~~~~~~~vLdlGcGtG~~~~~l~~~~-~~~------~v~~~D~s~~~~~~~----~~~~~~d~e~-l-~~~~~sfDl 106 (273) T Consensus 8 ~~~I-p~GSRVLDLGCGdG~LL~~L~d~k~v~GPPttehRL~G~Eid~~~v~Ac~~RGv~VIq~Dld~GL~~F~D~~FD~ 86 (205) T TIGR02081 8 LDLI-PPGSRVLDLGCGDGELLALLRDEKQVRGPPTTEHRLYGIEIDQDGVLACVARGVSVIQGDLDEGLEAFPDKSFDY 86 (205) T ss_pred HHHC-CCCCEEEEECCCCHHHHHHHHHHCCCCCCCCCCCEEEEEEECHHHHHHHHHCCCCEECCCCCCCCCCCCCCCCCE T ss_conf 8616-888736410168878999999743789888712000102345445999986252013006003401167887662 Q ss_pred HHHHHHHHCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHH-HHH-HHC-CCCCCCC----CCCCHHHHHH Q ss_conf 66666742223469999999998187870898406867633477889987-545-426-8664216----7459999999 Q gi|254780322|r 107 ILSPLNLHIINDTLEMFSKINHMLKPGGMFLAAIPGIGTLHELRKALLKA-ETE-LTG-GASPRVI----PFMDIKSAGT 179 (273) Q Consensus 107 i~s~~~l~w~~d~~~~l~~~~r~LkpgG~~~~s~~~~~~~~el~~~~~~a-~~~-~~~-~~~~~~~----~~~~~~~~~~ 179 (273) T Consensus 87 ViLsQTLQa~~Np~~iL~EmLRvg~---~aIVSFPN-FGyW~~R~~i~~~GRMPkVt~~lPY~WynTPNiHfcT~~DF~~ 162 (205) T TIGR02081 87 VILSQTLQATRNPEEILDEMLRVGR---RAIVSFPN-FGYWRVRWSILTGGRMPKVTDELPYEWYNTPNIHFCTLADFEE 162 (205) T ss_pred EEECHHHHHHHCHHHHHHHHHHHCC---EEEEECCC-CCCHHCHHHEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH T ss_conf 5421356642256899988776738---51560588-7711010311107858878878788888888753233778999 Q ss_pred HHHHCCCCC Q ss_conf 998508985 Q gi|254780322|r 180 LMEKSGFIS 188 (273) Q Consensus 180 ll~~agf~~ 188 (273) T Consensus 163 L~~~~~~~i 171 (205) T TIGR02081 163 LCEELNLRI 171 (205) T ss_pred HHHHCCCEE T ss_conf 998719651 |
Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In Pseudomonas putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells . . |
| >KOG2361 consensus | Back alignment and domain information |
|---|
Probab=99.32 E-value=3.4e-12 Score=90.44 Aligned_cols=153 Identities=20% Similarity=0.210 Sum_probs=111.3 Q ss_pred CCCCEEEECCCCCHHHHHHHHHCCC--CEEEEECCHHHHHHHHHH-------C---CCCCH----HHHCCCCCCCCHHHH Q ss_conf 9870999859985899999862697--089972001135775311-------0---01200----110143335222666 Q gi|254780322|r 46 TFENALELHGITGIVGYTCMETKKI--HRMIRAEISTEFSTLKRE-------V---ISCPL----EEIPSISQSVDLILS 109 (273) Q Consensus 46 ~~~~vLdlGcGtG~~~~~l~~~~~~--~~v~~~D~s~~~~~~~~~-------~---~~~d~----e~l~~~~~sfDli~s 109 (273) T Consensus 71 ~~~~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e~~~~afv~Dlt~~~~~~~~~~~svD~it~ 150 (264) T KOG2361 71 SAETILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDESRVEAFVWDLTSPSLKEPPEEGSVDIITL 150 (264) T ss_pred CHHHHEEECCCCCCCCCHHHHCCCCCCEEEEECCCCHHHHHHHHHCCCCCHHHHCCCCEECCCHHCCCCCCCCCCCEEEE T ss_conf 73451122247775122444248998738997489868999987363326455012000165601037888676334789 Q ss_pred HHHHHCC--CCHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHH-HHHHHHCCCCCCCCCCCCHHHHHHHHHHCCC Q ss_conf 6674222--346999999999818787089840686763347788998-7545426866421674599999999985089 Q gi|254780322|r 110 PLNLHII--NDTLEMFSKINHMLKPGGMFLAAIPGIGTLHELRKALLK-AETELTGGASPRVIPFMDIKSAGTLMEKSGF 186 (273) Q Consensus 110 ~~~l~w~--~d~~~~l~~~~r~LkpgG~~~~s~~~~~~~~el~~~~~~-a~~~~~~~~~~~~~~~~~~~~~~~ll~~agf 186 (273) T Consensus 151 IFvLSAi~pek~~~a~~nl~~llKPGG~llfrDYg~~DlaqlRF~~~~~i~~nfYVRgDGT~~YfF~~eeL~~~f~~agf 230 (264) T KOG2361 151 IFVLSAIHPEKMQSVIKNLRTLLKPGGSLLFRDYGRYDLAQLRFKKGQCISENFYVRGDGTRAYFFTEEELDELFTKAGF 230 (264) T ss_pred EEEEECCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHCCCCCEEECCEEECCCCCEEEECCHHHHHHHHHHCCC T ss_conf 99875148477899999999974888679984145434788751577432014588169966522368899999875153 Q ss_pred CCEEEEEEEEEE Q ss_conf 854677313688 Q gi|254780322|r 187 ISPIIDQDTYTV 198 (273) Q Consensus 187 ~~~~~~~~~~~~ 198 (273) T Consensus 231 ~~~~~~~~~rl~ 242 (264) T KOG2361 231 EEVQLEVDCRLL 242 (264) T ss_pred CHHCCCCEEEEE T ss_conf 210044103455 |
|
| >pfam05148 Methyltransf_8 Hypothetical methyltransferase | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.4e-11 Score=86.82 Aligned_cols=126 Identities=19% Similarity=0.234 Sum_probs=96.0 Q ss_pred HHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHCCCCEEEEECCHHHHHHHHHHCCCCCHHHHCCCCCCCCHHHHHHHHH Q ss_conf 99978986368987099985998589999986269708997200113577531100120011014333522266666742 Q gi|254780322|r 35 EIAFRLNMINQTFENALELHGITGIVGYTCMETKKIHRMIRAEISTEFSTLKREVISCPLEEIPSISQSVDLILSPLNLH 114 (273) Q Consensus 35 ~l~~~l~~~~~~~~~vLdlGcGtG~~~~~l~~~~~~~~v~~~D~s~~~~~~~~~~~~~d~e~l~~~~~sfDli~s~~~l~ 114 (273) T Consensus 57 ~iI~~lk~~p~-~~vIaD~GCGdA~lA~~~~~~---~kV~SfDLv----a~n~~Vt~cDi~~~PL~d~svDvaVfCLSLM 128 (214) T pfam05148 57 VIIRKLKRRPG-NGVIADLGCGEARIAFRKREF---ENVHSFDLV----AVNKRVIPCDMARVPLEDESVDVAVFCLSLM 128 (214) T ss_pred HHHHHHHHCCC-CEEEEECCCCHHHHHHHCCCC---CEEEEEECC----CCCCCCCCCCCCCCCCCCCCEEEEEEEHHHH T ss_conf 99999984899-718997588657999864678---738851325----6898835135336878877263687758762 Q ss_pred CCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEEEE Q ss_conf 22346999999999818787089840686763347788998754542686642167459999999998508985467731 Q gi|254780322|r 115 IINDTLEMFSKINHMLKPGGMFLAAIPGIGTLHELRKALLKAETELTGGASPRVIPFMDIKSAGTLMEKSGFISPIIDQD 194 (273) Q Consensus 115 w~~d~~~~l~~~~r~LkpgG~~~~s~~~~~~~~el~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~agf~~~~~~~~ 194 (273) T Consensus 129 GT-N~~~fi~EA~RvLk~~G~L~IAEV--------------------------~SRf~~~~~Fv~~~~~~GF~~~~~d~~ 181 (214) T pfam05148 129 GT-NIADFLKEANRILKNGGLLKIAEV--------------------------RSRFPSVGLFERAFTKLGFEVEHVDLS 181 (214) T ss_pred CC-CHHHHHHHHHHHCCCCCEEEEEEE--------------------------ECCCCCHHHHHHHHHHCCCEEEEEECC T ss_conf 88-779999998760310878999997--------------------------401689899999999759767753068 Q ss_pred E Q ss_conf 3 Q gi|254780322|r 195 T 195 (273) Q Consensus 195 ~ 195 (273) T Consensus 182 n 182 (214) T pfam05148 182 N 182 (214) T ss_pred C T ss_conf 8 |
This family consists of several uncharacterized eukaryotic proteins which are related to methyltransferases pfam01209. |
| >pfam05219 DREV DREV methyltransferase | Back alignment and domain information |
|---|
Probab=99.29 E-value=2.8e-11 Score=85.09 Aligned_cols=145 Identities=17% Similarity=0.101 Sum_probs=99.3 Q ss_pred CCCEEEECCCCCHHHHHHHHHCCCCEEEEECCHHHHHHH--HHHCCCCCHHHHCCCCCCCCHHHHHHHHHCCCCHHHHHH Q ss_conf 870999859985899999862697089972001135775--311001200110143335222666667422234699999 Q gi|254780322|r 47 FENALELHGITGIVGYTCMETKKIHRMIRAEISTEFSTL--KREVISCPLEEIPSISQSVDLILSPLNLHIINDTLEMFS 124 (273) Q Consensus 47 ~~~vLdlGcGtG~~~~~l~~~~~~~~v~~~D~s~~~~~~--~~~~~~~d~e~l~~~~~sfDli~s~~~l~w~~d~~~~l~ 124 (273) T Consensus 95 ~~~LLDlGAGdG~VT~~la~~F~--~V~aTE~S~~Mr~rL~~rgf~vl~~~~~~~~~~~fDvIscLNvLDRc~~P~~LL~ 172 (265) T pfam05219 95 PVTLLDLGAGDGEITLRMAPTFE--EVYATELSWTMRDRLKKKNYNVLTEIEWQETDVNLDLILCLNLLDRCFDPFKLLE 172 (265) T ss_pred CCEEEEECCCCCHHHHHHHHHHC--EEEEEECCHHHHHHHHHCCCEEEEEHHCCCCCCCEEEEHHHHHHHCCCCHHHHHH T ss_conf 66478835899789999997523--5888727899999999759868750120356874455422244531388699999 Q ss_pred HHHHHHCCCCEEEEEECCCCCCH-HHHHHHHHHHHHHHCCCCCCCCCCC-CHHHHHHHHHHCCCCCEEEEEEEE Q ss_conf 99998187870898406867633-4778899875454268664216745-999999999850898546773136 Q gi|254780322|r 125 KINHMLKPGGMFLAAIPGIGTLH-ELRKALLKAETELTGGASPRVIPFM-DIKSAGTLMEKSGFISPIIDQDTY 196 (273) Q Consensus 125 ~~~r~LkpgG~~~~s~~~~~~~~-el~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~~ll~~agf~~~~~~~~~~ 196 (273) T Consensus 173 ~i~~~L~P~G~lilAvVlPf~pyVE~~~-~~~--~~p~e~l~~~g~~~E~~v~~l~~vl~p~GF~v~~~tR~PY 243 (265) T pfam05219 173 DIHLALAPNGRVIVALVLPYMHYVETNT-GSH--LPPRPLLENNGASFEEEVARFMEVFENAGFRVEAWTRLPY 243 (265) T ss_pred HHHHHCCCCCEEEEEEEECCCCEEECCC-CCC--CCCHHHCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCC T ss_conf 9997249996799999825620177589-877--9952113789980999999999987607957888732673 |
This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown. However, these proteins appear to be related to other methyltransferases (Bateman A pers obs). |
| >KOG2899 consensus | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.4e-10 Score=81.12 Aligned_cols=140 Identities=18% Similarity=0.241 Sum_probs=91.3 Q ss_pred HHHHHCCCC---CCCEEEECCCCCHHHHHHHHHCCCCEEEEECCHHHHHHHHHHCCC----------------------- Q ss_conf 789863689---870999859985899999862697089972001135775311001----------------------- Q gi|254780322|r 38 FRLNMINQT---FENALELHGITGIVGYTCMETKKIHRMIRAEISTEFSTLKREVIS----------------------- 91 (273) Q Consensus 38 ~~l~~~~~~---~~~vLdlGcGtG~~~~~l~~~~~~~~v~~~D~s~~~~~~~~~~~~----------------------- 91 (273) T Consensus 47 ~rLk~L~~~~f~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~ 126 (288) T KOG2899 47 PRLKVLEKDWFEPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGP 126 (288) T ss_pred HHHHHCCCCCCCCCEEEECCCCCCHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC T ss_conf 34431354224762057506775465899998606433467615689999999735660101033457875433544454 Q ss_pred ----------------------------CCHHHHCCCCCCCCHHHHHHHHHCC------CCHHHHHHHHHHHHCCCCEEE Q ss_conf ----------------------------2001101433352226666674222------346999999999818787089 Q gi|254780322|r 92 ----------------------------CPLEEIPSISQSVDLILSPLNLHII------NDTLEMFSKINHMLKPGGMFL 137 (273) Q Consensus 92 ----------------------------~d~e~l~~~~~sfDli~s~~~l~w~------~d~~~~l~~~~r~LkpgG~~~ 137 (273) T Consensus 127 is~~~~a~~a~t~~~p~n~~f~~~n~vle~~dfl~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLv 206 (288) T KOG2899 127 ISQRNEADRAFTTDFPDNVWFQKENYVLESDDFLDMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILV 206 (288) T ss_pred CCCCCCCCCCCCCCCCCCHHCCCCCEEEECCHHHHHCCCCCCEEEEEEEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEE T ss_conf 10124466510036772010132337986004555056542279997733467645645789999999998608685799 Q ss_pred EEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHC Q ss_conf 84068676334778899875454268664216745999999999850 Q gi|254780322|r 138 AAIPGIGTLHELRKALLKAETELTGGASPRVIPFMDIKSAGTLMEKS 184 (273) Q Consensus 138 ~s~~~~~~~~el~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~a 184 (273) T Consensus 207 vE------PQpWk-sY~kaar~~e~~~~ny~~i~lkp~~f~~~l~q~ 246 (288) T KOG2899 207 VE------PQPWK-SYKKAARRSEKLAANYFKIFLKPEDFEDWLNQI 246 (288) T ss_pred EC------CCCHH-HHHHHHHHHHHHHCCCCCEECCHHHHHHHHHHH T ss_conf 75------88617-799999999986058401032888987654202 |
|
| >KOG3045 consensus | Back alignment and domain information |
|---|
Probab=99.14 E-value=2.5e-10 Score=79.55 Aligned_cols=128 Identities=20% Similarity=0.254 Sum_probs=93.8 Q ss_pred HHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHCCCCEEEEECCHHHHHHHHHHCCCCCHHHHCCCCCCCCHHHHHHHH Q ss_conf 99997898636898709998599858999998626970899720011357753110012001101433352226666674 Q gi|254780322|r 34 KEIAFRLNMINQTFENALELHGITGIVGYTCMETKKIHRMIRAEISTEFSTLKREVISCPLEEIPSISQSVDLILSPLNL 113 (273) Q Consensus 34 ~~l~~~l~~~~~~~~~vLdlGcGtG~~~~~l~~~~~~~~v~~~D~s~~~~~~~~~~~~~d~e~l~~~~~sfDli~s~~~l 113 (273) T Consensus 169 d~ii~~ik~r~-~~~vIaD~GCGEakiA~-----~~~~kV~SfDL~a----~~~~V~~cDm~~vPl~d~svDvaV~CLSL 238 (325) T KOG3045 169 DVIIRKIKRRP-KNIVIADFGCGEAKIAS-----SERHKVHSFDLVA----VNERVIACDMRNVPLEDESVDVAVFCLSL 238 (325) T ss_pred HHHHHHHHHCC-CCEEEEECCCCHHHHHH-----CCCCCEEEEEEEC----CCCCEEECCCCCCCCCCCCCCEEEEEHHH T ss_conf 99999997176-76478853664233320-----4666504663002----78853532244786766754478752755 Q ss_pred HCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEEE Q ss_conf 22234699999999981878708984068676334778899875454268664216745999999999850898546773 Q gi|254780322|r 114 HIINDTLEMFSKINHMLKPGGMFLAAIPGIGTLHELRKALLKAETELTGGASPRVIPFMDIKSAGTLMEKSGFISPIIDQ 193 (273) Q Consensus 114 ~w~~d~~~~l~~~~r~LkpgG~~~~s~~~~~~~~el~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~agf~~~~~~~ 193 (273) T Consensus 239 Mgt-n~~df~kEa~RiLk~gG~l~IAEv--------------------------~SRf~dv~~f~r~l~~lGF~~~~~d~ 291 (325) T KOG3045 239 MGT-NLADFIKEANRILKPGGLLYIAEV--------------------------KSRFSDVKGFVRALTKLGFDVKHKDV 291 (325) T ss_pred HCC-CHHHHHHHHHHHHCCCCEEEEEEH--------------------------HHHCCCHHHHHHHHHHCCCEEEEHHH T ss_conf 343-389999999887335866999860--------------------------22134088999999872870221100 Q ss_pred EEEEE Q ss_conf 13688 Q gi|254780322|r 194 DTYTV 198 (273) Q Consensus 194 ~~~~~ 198 (273) T Consensus 292 ~n~~F 296 (325) T KOG3045 292 SNKYF 296 (325) T ss_pred HCCEE T ss_conf 00418 |
|
| >TIGR00452 TIGR00452 methyltransferase, putative; InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.08 E-value=3.3e-10 Score=78.87 Aligned_cols=152 Identities=13% Similarity=0.095 Sum_probs=105.9 Q ss_pred HHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHCCCCEEEEECCHHHHHHH---HHHC---------CCCCHHHHCCCC-C Q ss_conf 99789863689870999859985899999862697089972001135775---3110---------012001101433-3 Q gi|254780322|r 36 IAFRLNMINQTFENALELHGITGIVGYTCMETKKIHRMIRAEISTEFSTL---KREV---------ISCPLEEIPSIS-Q 102 (273) Q Consensus 36 l~~~l~~~~~~~~~vLdlGcGtG~~~~~l~~~~~~~~v~~~D~s~~~~~~---~~~~---------~~~d~e~l~~~~-~ 102 (273) T Consensus 113 ~l~~~~pL--~~~~i~DVGC~~GY~~~~M~~~Gak-~~VG~DP~~L~~~QFE~~~~ll~~~~~~~l~~LGiE~l~~~~pn 189 (316) T TIGR00452 113 VLPHLSPL--KGRTILDVGCGSGYHLWRMLGEGAK-LLVGIDPTELFLCQFEAVRKLLDNDKRAILLPLGIEQLQELKPN 189 (316) T ss_pred HCCCCCCC--CCCEEEEECCCCHHHHHHHHHCCCC-EEEECCHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHCCCC T ss_conf 31246654--5777898336870688977620782-78743657899999999998724235575403670222320764 Q ss_pred CCCHHHHHHHHHCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHH Q ss_conf 52226666674222346999999999818787089840686763347788998754542686642167459999999998 Q gi|254780322|r 103 SVDLILSPLNLHIINDTLEMFSKINHMLKPGGMFLAAIPGIGTLHELRKALLKAETELTGGASPRVIPFMDIKSAGTLME 182 (273) Q Consensus 103 sfDli~s~~~l~w~~d~~~~l~~~~r~LkpgG~~~~s~~~~~~~~el~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~ 182 (273) T Consensus 190 AFD~vFs~GVLYHRkSPLe~L~~L~~~L~~~GELVL~TLviD~d~~~~LvP----~~~YA-kMkNVYFIPSv~aL~~Wl~ 264 (316) T TIGR00452 190 AFDTVFSLGVLYHRKSPLEHLKQLKDQLVKKGELVLETLVIDGDLNTVLVP----KDRYA-KMKNVYFIPSVSALKNWLE 264 (316) T ss_pred CCEEEEECCHHHCCCCCHHHHHHHHHHHHHCCCEEEEEEEECCCCCEEECC----CCCCC-CEEEEEEHHHHHHHHHHHH T ss_conf 120312202021155708999999999875793586534660776758647----54442-2000142023899988887 Q ss_pred HCCCCCEEEEEEE Q ss_conf 5089854677313 Q gi|254780322|r 183 KSGFISPIIDQDT 195 (273) Q Consensus 183 ~agf~~~~~~~~~ 195 (273) T Consensus 265 kvGF~~~~i~~V~ 277 (316) T TIGR00452 265 KVGFENVRILDVL 277 (316) T ss_pred HCCCCEEEEEEEE T ss_conf 4495314787510 |
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order . Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI ), shared by other AdoMet-Mtases , is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments , although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases , , , . The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences . This is a set of proteobacterial proteins, which have homology in their central region to a large number of methyltransferases active on a variety of substrates. . |
| >pfam05891 Hydroxy-O-Methy Putative hydroxyindole-O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.94 E-value=6.1e-09 Score=71.49 Aligned_cols=131 Identities=15% Similarity=0.121 Sum_probs=92.8 Q ss_pred CCCEEEECCCCCHHHHHHHHHCCCCEEEEECCHHHHHHHHHHCC-----------CCCHHHHCCCCCCCCHHHHHHHHHC Q ss_conf 87099985998589999986269708997200113577531100-----------1200110143335222666667422 Q gi|254780322|r 47 FENALELHGITGIVGYTCMETKKIHRMIRAEISTEFSTLKREVI-----------SCPLEEIPSISQSVDLILSPLNLHI 115 (273) Q Consensus 47 ~~~vLdlGcGtG~~~~~l~~~~~~~~v~~~D~s~~~~~~~~~~~-----------~~d~e~l~~~~~sfDli~s~~~l~w 115 (273) T Consensus 56 ~~~alDcGAGIGRVTk~lL~~~-f~~VDlVEpv~~Fl~~ak~~l~~~~~~~~~~~~~gLQdf~P~~~~YD~IW~QW~~gh 134 (217) T pfam05891 56 HLVALDCGAGIGRVTKNLLLPL-FSKVDLVEPVEDFLAKAKEYLAEEKKKVGNFFCVGLQDFTPEEGRYDLIWIQWCIGH 134 (217) T ss_pred CCEEEECCCCCCEECHHHHHHH-CCEEEEECCCHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCEEEEEEEHHHHCC T ss_conf 3266542676361126678875-481357544499999999987403797653897361016899981769980584521 Q ss_pred CCC--HHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEE Q ss_conf 234--69999999998187870898406867633477889987545426866421674599999999985089854677 Q gi|254780322|r 116 IND--TLEMFSKINHMLKPGGMFLAAIPGIGTLHELRKALLKAETELTGGASPRVIPFMDIKSAGTLMEKSGFISPIID 192 (273) Q Consensus 116 ~~d--~~~~l~~~~r~LkpgG~~~~s~~~~~~~~el~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~agf~~~~~~ 192 (273) T Consensus 135 LtD~dlv~Fl~RCk~~L~~~G~IvvKEN~~~~~~~----~D~~--------DsSv--TRs~~~~~~lF~~AGl~~v~~~ 199 (217) T pfam05891 135 LTDEDLVAFLKRCKSGLKPNGIIVIKENVTQEGVI----FDDV--------DSSV--TRGEASFRKIFKKAGLKLVAEE 199 (217) T ss_pred CCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCE----ECCC--------CCCC--CCCHHHHHHHHHHCCCEEEEHH T ss_conf 88899999999999847898649984223677774----1565--------4543--1779999999998598566043 |
This family of proteins is a putative hydroxyindole-O-methyltransferase and by homology, is expected to catalyse the conversion of N-acetyl serotonin to melatonin. The protein is expressed in the tail neuron PVT and in uterine cells [worm-base]. |
| >pfam06080 DUF938 Protein of unknown function (DUF938) | Back alignment and domain information |
|---|
Probab=98.82 E-value=5.8e-08 Score=65.79 Aligned_cols=137 Identities=19% Similarity=0.192 Sum_probs=91.7 Q ss_pred CCCCCEEEECCCCCHHHHHHHHHCCCCEEEEECCHHHHHH-H-HH----------HCCCCCHH--HHCC---CCCCCCHH Q ss_conf 8987099985998589999986269708997200113577-5-31----------10012001--1014---33352226 Q gi|254780322|r 45 QTFENALELHGITGIVGYTCMETKKIHRMIRAEISTEFST-L-KR----------EVISCPLE--EIPS---ISQSVDLI 107 (273) Q Consensus 45 ~~~~~vLdlGcGtG~~~~~l~~~~~~~~v~~~D~s~~~~~-~-~~----------~~~~~d~e--~l~~---~~~sfDli 107 (273) T Consensus 24 ~~~~~VLEIaSGTGQHav~fA~~lP~l~WqPSD~~~~~~~sI~aw~~~~~l~Nl~~P~~LDv~~~~w~~~~~~~~~~dai 103 (201) T pfam06080 24 KTTERVLEIASGTGQHAVFFAPLLPNLTWQPSDPDPNLRGSIAAWADQQGLRNLRPPLHLDVTRPPWPVEAPAPASYDAI 103 (201) T ss_pred CCCCCEEEECCCCHHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCCCCCCCCCCHH T ss_conf 47885799768726999999987899885158888778999999987437776688737632789987555667660023 Q ss_pred HHHHHHHCCC--CHHHHHHHHHHHHCCCCEEEE----EECCCCC---CHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHH Q ss_conf 6666742223--469999999998187870898----4068676---334778899875454268664216745999999 Q gi|254780322|r 108 LSPLNLHIIN--DTLEMFSKINHMLKPGGMFLA----AIPGIGT---LHELRKALLKAETELTGGASPRVIPFMDIKSAG 178 (273) Q Consensus 108 ~s~~~l~w~~--d~~~~l~~~~r~LkpgG~~~~----s~~~~~~---~~el~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 178 (273) T Consensus 104 ~~iN~lHI~pw~~~~~lf~ga~~~L~~gG~l~lYGPF~~~G~~ts~SN~~FD~~Lr~~d--------p~-~GiRD~e~v~ 174 (201) T pfam06080 104 FSINMIHISPWSCVEGLFRGAGRLLPPGGVLYIYGPYNQDGELTSDSNRDFDRSLRQRD--------PE-WGIRDIEDVI 174 (201) T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCEECCCHHHHHHHHHHHCC--------CC-CCCCCHHHHH T ss_conf 30025773789999999999999851588268746502599768825899999998509--------63-3783899999 Q ss_pred HHHHHCCCCCEE Q ss_conf 999850898546 Q gi|254780322|r 179 TLMEKSGFISPI 190 (273) Q Consensus 179 ~ll~~agf~~~~ 190 (273) T Consensus 175 ~lA~~~GL~l~~ 186 (201) T pfam06080 175 ALAAAQGLQLVK 186 (201) T ss_pred HHHHHCCCCCCC T ss_conf 999987997686 |
This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown. |
| >TIGR00417 speE spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase ( |
|---|
Probab=98.57 E-value=1.5e-07 Score=63.38 Aligned_cols=144 Identities=15% Similarity=0.210 Sum_probs=106.6 Q ss_pred HHHHHHHHHCCC-CCCCEEEECCCCCHHHHHHHHHCCCCEEEEECCHHHHHHHHHHCCC----------------CCH-H Q ss_conf 999978986368-9870999859985899999862697089972001135775311001----------------200-1 Q gi|254780322|r 34 KEIAFRLNMINQ-TFENALELHGITGIVGYTCMETKKIHRMIRAEISTEFSTLKREVIS----------------CPL-E 95 (273) Q Consensus 34 ~~l~~~l~~~~~-~~~~vLdlGcGtG~~~~~l~~~~~~~~v~~~D~s~~~~~~~~~~~~----------------~d~-e 95 (273) T Consensus 62 hEMi~HvpL~~H~NPk~VLvIGGGDGG~lREV~KH~sVE~~~lVdID~~VI~~srkyLP~~~~g~~dderv~~~i~DG~~ 141 (284) T TIGR00417 62 HEMIAHVPLFAHPNPKKVLVIGGGDGGVLREVVKHKSVEKATLVDIDEKVIELSRKYLPKLAAGSFDDERVDLAIDDGFK 141 (284) T ss_pred HHHHHHHHHHCCCCCCEEEEEECCCCCEEEEEEECCCCCEEEEEECCHHHHHHHHHHCHHHHCCCCCCCEEEEEECCCHH T ss_conf 78998756536898854789963888468788755981679999727478999888261210566588803589825179 Q ss_pred HHCCC-----CCCCCHHHHHHHHHCCCCH---------HHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHH Q ss_conf 10143-----3352226666674222346---------999999999818787089840686763347788998754542 Q gi|254780322|r 96 EIPSI-----SQSVDLILSPLNLHIINDT---------LEMFSKINHMLKPGGMFLAAIPGIGTLHELRKALLKAETELT 161 (273) Q Consensus 96 ~l~~~-----~~sfDli~s~~~l~w~~d~---------~~~l~~~~r~LkpgG~~~~s~~~~~~~~el~~~~~~a~~~~~ 161 (273) T Consensus 142 fl~~~Gasdv~~~fDVIIvDst-----DPvGPa~~LF~~~Fy~~~~~aL~~~Gv~v~Qss-------------------- 196 (284) T TIGR00417 142 FLRDTGASDVEKKFDVIIVDST-----DPVGPAETLFTKEFYELLKKALNEDGVIVAQSS-------------------- 196 (284) T ss_pred HHHHCCCCCCCCCCCEEEEECC-----CCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECC-------------------- T ss_conf 8976152222121447997277-----895655410217999999985299988998027-------------------- Q ss_pred CCCCCCCCCCCC---HHHHHHHHHHCCCCCEEEEEEEEEEECCCHHHHHHHHH Q ss_conf 686642167459---99999999850898546773136883589899999999 Q gi|254780322|r 162 GGASPRVIPFMD---IKSAGTLMEKSGFISPIIDQDTYTVYYKSMLHLMHDLR 211 (273) Q Consensus 162 ~~~~~~~~~~~~---~~~~~~ll~~agf~~~~~~~~~~~~~~~~~~~l~~~lk 211 (273) T Consensus 197 ------~s~~~~~~~~~d~~r~~~~~~F~~~~~y~~~iPTYp~G---~~~F~~ 240 (284) T TIGR00417 197 ------ESPWLQLELIKDLKRKVKEVPFPITEYYTAAIPTYPSG---LWSFII 240 (284) T ss_pred ------CCCCCCHHHHHHHHHHHHHCCCCCCEEEEEECCCCHHH---HHHHHH T ss_conf ------88432748888788877526897530466407865023---545322 |
5.1.16" />), spermine synthase ( |
| >pfam12147 Hydrolase_5 Putative lysophospholipase | Back alignment and domain information |
|---|
Probab=98.40 E-value=1.2e-05 Score=52.17 Aligned_cols=147 Identities=12% Similarity=0.113 Sum_probs=101.5 Q ss_pred CCCCEEEECCCCCHHHHHHHHHCCC--CEEEEECCHHHHHHHHHH------------CCCCCH---HHHCCCCCCCCHHH Q ss_conf 9870999859985899999862697--089972001135775311------------001200---11014333522266 Q gi|254780322|r 46 TFENALELHGITGIVGYTCMETKKI--HRMIRAEISTEFSTLKRE------------VISCPL---EEIPSISQSVDLIL 108 (273) Q Consensus 46 ~~~~vLdlGcGtG~~~~~l~~~~~~--~~v~~~D~s~~~~~~~~~------------~~~~d~---e~l~~~~~sfDli~ 108 (273) T Consensus 135 ~~v~ilDIAaG~GRYvldal~~~~~~~~~illRDys~~NV~~G~~li~ergl~~ia~Fe~gdAFd~~~la~l~p~P~l~I 214 (311) T pfam12147 135 RPVRILDIAAGHGRYVLDALAKAPQRPDSILLRDYSPLNVEQGRALIAERGLEDIARFEQGDAFDPASLAALTPAPTLAI 214 (311) T ss_pred CCEEEEEECCCCCHHHHHHHHHCCCCCCEEEECCCCHHHHHHHHHHHHHCCCCHHEEEEECCCCCHHHHHCCCCCCCEEE T ss_conf 95699985168616299999857988745885148887799999999974962000674057679767632699997899 Q ss_pred HHHHHHCCCCHH---HHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCC Q ss_conf 666742223469---99999999818787089840686763347788998754542686642167459999999998508 Q gi|254780322|r 109 SPLNLHIINDTL---EMFSKINHMLKPGGMFLAAIPGIGTLHELRKALLKAETELTGGASPRVIPFMDIKSAGTLMEKSG 185 (273) Q Consensus 109 s~~~l~w~~d~~---~~l~~~~r~LkpgG~~~~s~~~~~~~~el~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~ag 185 (273) T Consensus 215 VSGLyELF~dN~lv~~sl~Gl~~ai~~gGyLIYT--gQPWHPQLe~IAr~LtSHr~--G~aWVMRrRsQ~EmD~Lv~~aG 290 (311) T pfam12147 215 VSGLYELFPDNDLVRRSLAGLAQAVEPGGYLIYT--GQPWHPQLEMIARALTSHRG--GEAWVMRRRSQAEMDELVEAAG 290 (311) T ss_pred EECHHHHCCCHHHHHHHHHHHHHHCCCCCEEEEC--CCCCCHHHHHHHHHHHCCCC--CCCCEEEECCHHHHHHHHHHCC T ss_conf 7012663687299999999999750899789982--99886679999999725668--8867677367999999999819 Q ss_pred CCCEEEEEEEE Q ss_conf 98546773136 Q gi|254780322|r 186 FISPIIDQDTY 196 (273) Q Consensus 186 f~~~~~~~~~~ 196 (273) T Consensus 291 f~K~~q~iD~~ 301 (311) T pfam12147 291 FRKIAQRIDEW 301 (311) T ss_pred CCHHHHEECCC T ss_conf 72155502367 |
This domain is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with pfam00561. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. |
| >COG2521 Predicted archaeal methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.35 E-value=2.1e-06 Score=56.69 Aligned_cols=135 Identities=16% Similarity=0.160 Sum_probs=88.3 Q ss_pred HHHC-CCCCCCEEEECCCCCHHHHHHHHHCCCCEEEEECCHHHHHH-------------HHHHCCCCCHHHH--CCCCCC Q ss_conf 9863-68987099985998589999986269708997200113577-------------5311001200110--143335 Q gi|254780322|r 40 LNMI-NQTFENALELHGITGIVGYTCMETKKIHRMIRAEISTEFST-------------LKREVISCPLEEI--PSISQS 103 (273) Q Consensus 40 l~~~-~~~~~~vLdlGcGtG~~~~~l~~~~~~~~v~~~D~s~~~~~-------------~~~~~~~~d~e~l--~~~~~s 103 (273) T Consensus 127 v~~V~~~~G~rVLDtC~GLGYtAi~a~~rGA~-~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~~~D~s 205 (287) T COG2521 127 VELVKVKRGERVLDTCTGLGYTAIEALERGAI-HVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEVVKDFDDES 205 (287) T ss_pred HHEECCCCCCEEEEECCCCCHHHHHHHHCCCC-EEEEEEECCCEEEEECCCCCCCCCCCCCCEEECCCHHHHHHCCCCCC T ss_conf 62444366878443246713899999875874-89999608772774135889842020031786165999974188653 Q ss_pred CCHHHHH---HHHHCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHH Q ss_conf 2226666---6742223469999999998187870898406867633477889987545426866421674599999999 Q gi|254780322|r 104 VDLILSP---LNLHIINDTLEMFSKINHMLKPGGMFLAAIPGIGTLHELRKALLKAETELTGGASPRVIPFMDIKSAGTL 180 (273) Q Consensus 104 fDli~s~---~~l~w~~d~~~~l~~~~r~LkpgG~~~~s~~~~~~~~el~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l 180 (273) T Consensus 206 fDaIiHDPPRfS~AgeLYseefY~El~RiLkrgGrlFHYvG~Pg~ryrG~------------------d~---~~gVa~R 264 (287) T COG2521 206 FDAIIHDPPRFSLAGELYSEEFYRELYRILKRGGRLFHYVGNPGKRYRGL------------------DL---PKGVAER 264 (287) T ss_pred CCEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCC------------------CH---HHHHHHH T ss_conf 01686079733102357689999999997076980799727987402467------------------71---4789999 Q ss_pred HHHCCCCCEEEEEEEE Q ss_conf 9850898546773136 Q gi|254780322|r 181 MEKSGFISPIIDQDTY 196 (273) Q Consensus 181 l~~agf~~~~~~~~~~ 196 (273) T Consensus 265 Lr~vGF~~v~~~~~~~ 280 (287) T COG2521 265 LRRVGFEVVKKVREAL 280 (287) T ss_pred HHHCCCEEEEEEHHCC T ss_conf 9861734443232106 |
|
| >pfam05724 TPMT Thiopurine S-methyltransferase (TPMT) | Back alignment and domain information |
|---|
Probab=98.29 E-value=4.1e-06 Score=55.01 Aligned_cols=129 Identities=18% Similarity=0.122 Sum_probs=89.7 Q ss_pred CCCCEEEECCCCCHHHHHHHHHCCCCEEEEECCHHHHHHHH-----------------------HHCCCCCHHHHCCC-C Q ss_conf 98709998599858999998626970899720011357753-----------------------11001200110143-3 Q gi|254780322|r 46 TFENALELHGITGIVGYTCMETKKIHRMIRAEISTEFSTLK-----------------------REVISCPLEEIPSI-S 101 (273) Q Consensus 46 ~~~~vLdlGcGtG~~~~~l~~~~~~~~v~~~D~s~~~~~~~-----------------------~~~~~~d~e~l~~~-~ 101 (273) T Consensus 22 ~~~rvlVPlCGks~D~~wLa~~G~--~VvGvels~~Av~~ff~e~~~~~~~~~~~~~~~~~~~~i~i~~gD~F~l~~~~~ 99 (203) T pfam05724 22 PGLRVLVPLCGKALDMVWLAEQGH--FVVGVEISELAVEKFFAEANLSPPITELSGFKEYRAGGIELLCGDFFTLPREEL 99 (203) T ss_pred CCCEEEEECCCCHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHCCCCCCCEECCCCEEECCCCEEEEECCHHCCCHHHC T ss_conf 998899968998599999983898--489995679999999997378875101366213205864899773213784346 Q ss_pred CCCCHHHHHHHHHCCCCH--HHHHHHHHHHHCCCCEEEEEE-CCCCCCHHHHHHHHHHHHHHHCCCCCCCCCC-CCHHHH Q ss_conf 352226666674222346--999999999818787089840-6867633477889987545426866421674-599999 Q gi|254780322|r 102 QSVDLILSPLNLHIINDT--LEMFSKINHMLKPGGMFLAAI-PGIGTLHELRKALLKAETELTGGASPRVIPF-MDIKSA 177 (273) Q Consensus 102 ~sfDli~s~~~l~w~~d~--~~~l~~~~r~LkpgG~~~~s~-~~~~~~~el~~~~~~a~~~~~~~~~~~~~~~-~~~~~~ 177 (273) T Consensus 100 g~fD~IyDraal~ALpp~~R~~Ya~~l~~lL~pgg~~lLitl~y~~~~~-------------~-G-----PPfsv~~~Ev 160 (203) T pfam05724 100 GKFDLIYDRAALCALPPEMRPRYAKQMYELLPPGGEGLLITLDYPQTDH-------------E-G-----PPFSVPAAEL 160 (203) T ss_pred CCCCEEEEECCEEECCHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCC-------------C-C-----CCCCCCHHHH T ss_conf 8734899703235389899999999999971899669999997386557-------------9-9-----4898999999 Q ss_pred HHHHHHCCCCCEEEEEEEE Q ss_conf 9999850898546773136 Q gi|254780322|r 178 GTLMEKSGFISPIIDQDTY 196 (273) Q Consensus 178 ~~ll~~agf~~~~~~~~~~ 196 (273) T Consensus 161 ~~lf~-~~f~i~~L~~~d~ 178 (203) T pfam05724 161 EALFG-GGWKVARLEREDA 178 (203) T ss_pred HHHHC-CCCEEEEEEEECC T ss_conf 98708-9856999650044 |
This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulfhydryl compounds, including anticancer and immunosuppressive thiopurines. |
| >TIGR00537 hemK_rel_arch methylase, putative; InterPro: IPR004557 These proteins exhibit homology to the Saccharomyces cerevisiae (yeast) ORF YDR140w (FYV9) | Back alignment and domain information |
|---|
Probab=98.29 E-value=9.3e-06 Score=52.90 Aligned_cols=129 Identities=22% Similarity=0.275 Sum_probs=81.4 Q ss_pred HHHHHHHCCCCCCC-EEEECCCCCHHHHHHHHHCCCCEEEEECCHHHHHHHHHH----------CCCCCHHHHCCCCCCC Q ss_conf 99789863689870-999859985899999862697089972001135775311----------0012001101433352 Q gi|254780322|r 36 IAFRLNMINQTFEN-ALELHGITGIVGYTCMETKKIHRMIRAEISTEFSTLKRE----------VISCPLEEIPSISQSV 104 (273) Q Consensus 36 l~~~l~~~~~~~~~-vLdlGcGtG~~~~~l~~~~~~~~v~~~D~s~~~~~~~~~----------~~~~d~e~l~~~~~sf 104 (273) T Consensus 12 L~~nL~~~--k~ddeVlEiG~GtGlvair~~~Kg~k-~i~~tDinP~Avk~~~~NA~~N~~~l~v~~~Dlf~~-v~geKF 87 (183) T TIGR00537 12 LEANLREL--KPDDEVLEIGAGTGLVAIRLKEKGKK-KILTTDINPFAVKLLRENAKLNNVELDVLETDLFEG-VRGEKF 87 (183) T ss_pred HHHHHHHH--CCCCEEEEEECCHHHHHHHHHCCCCC-EEEEEECCHHHHHHHHHCCHHCCCCEEEEECCCCCC-CCCCCE T ss_conf 99986751--69952899716804899998515882-078863687999987731000266404761113578-555510 Q ss_pred CHHHHHH-HHHCCCCH--------------------HHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCC Q ss_conf 2266666-74222346--------------------99999999981878708984068676334778899875454268 Q gi|254780322|r 105 DLILSPL-NLHIINDT--------------------LEMFSKINHMLKPGGMFLAAIPGIGTLHELRKALLKAETELTGG 163 (273) Q Consensus 105 Dli~s~~-~l~w~~d~--------------------~~~l~~~~r~LkpgG~~~~s~~~~~~~~el~~~~~~a~~~~~~~ 163 (273) T Consensus 88 dviLFNpPYlp~~~d~~~gd~Ld~A~dGGkdGr~vidrFldelp~~lk~gGrv~l~~----------------------- 144 (183) T TIGR00537 88 DVILFNPPYLPLEDDEKRGDYLDLAIDGGKDGRKVIDRFLDELPEYLKEGGRVQLIQ----------------------- 144 (183) T ss_pred EEEEECCCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEE----------------------- T ss_conf 277307898888765234766443331787305788888765688870599899996----------------------- Q ss_pred CCCCCCCCCCHHHHHHHHHHCCCCCEEEEEEEE Q ss_conf 664216745999999999850898546773136 Q gi|254780322|r 164 ASPRVIPFMDIKSAGTLMEKSGFISPIIDQDTY 196 (273) Q Consensus 164 ~~~~~~~~~~~~~~~~ll~~agf~~~~~~~~~~ 196 (273) T Consensus 145 -----SSl~~e~~~~~kl~~~GF~~ei~a~~~~ 172 (183) T TIGR00537 145 -----SSLSDEKDTLDKLDELGFKVEIVAERKL 172 (183) T ss_pred -----ECCCCCHHHHHHHHHCCCCEEEEECCCC T ss_conf -----0668868899887615884799863678 |
No known function has been described for this yeast ORF though the null mutant is viable and exhibits K1 killer toxin hypersensitivity. Members of this entry are weakly related to the yeast ORF YNL063w which is a putative S-adenosyl-methionine-dependent methyltransferase . Members of this entry are found in archaeal, bacterial and eukaryotic lineages.; GO: 0008168 methyltransferase activity. |
| >COG4627 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.98 E-value=7.3e-06 Score=53.53 Aligned_cols=130 Identities=15% Similarity=0.196 Sum_probs=78.1 Q ss_pred CEEEECCCCCHHHHHHHHHCCCCEEEEECCHHHHHHHHHHCCCCCHHHHCCCCCCCCHHHHHHHHHCC--CCHHHHHHHH Q ss_conf 09998599858999998626970899720011357753110012001101433352226666674222--3469999999 Q gi|254780322|r 49 NALELHGITGIVGYTCMETKKIHRMIRAEISTEFSTLKREVISCPLEEIPSISQSVDLILSPLNLHII--NDTLEMFSKI 126 (273) Q Consensus 49 ~vLdlGcGtG~~~~~l~~~~~~~~v~~~D~s~~~~~~~~~~~~~d~e~l~~~~~sfDli~s~~~l~w~--~d~~~~l~~~ 126 (273) T Consensus 5 ~kv~ig~G~~r~-------np--gWi~~d~ed~~---~vdlvc~As~e~~F~dns~d~iyaeHvlEHlt~~Eg~~alkec 72 (185) T COG4627 5 EKVKIGAGGKRV-------NP--GWIITDVEDRP---EVDLVCRASNESMFEDNSVDAIYAEHVLEHLTYDEGTSALKEC 72 (185) T ss_pred EEEEEECCCCCC-------CC--CCEEEEHHCCC---CCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 689983166325-------88--73661310165---3213121455445887606789999999887699889999999 Q ss_pred HHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCC-CCCCC-CHHHHHHHHHHCCCCCEEEEE Q ss_conf 99818787089840686763347788998754542686642-16745-999999999850898546773 Q gi|254780322|r 127 NHMLKPGGMFLAAIPGIGTLHELRKALLKAETELTGGASPR-VIPFM-DIKSAGTLMEKSGFISPIIDQ 193 (273) Q Consensus 127 ~r~LkpgG~~~~s~~~~~~~~el~~~~~~a~~~~~~~~~~~-~~~~~-~~~~~~~ll~~agf~~~~~~~ 193 (273) T Consensus 73 hr~Lrp~G~LriAvPdl~f~~~~Y~~~---vqvggpgpndhP~~r~v~t~r~m~n~~m~~~~~~kl~e~ 138 (185) T COG4627 73 HRFLRPGGKLRIAVPDLKFLDWLYQHD---VQVGGPGPNDHPLHRIVKTMRMMFNGFMDAGFVVKLLEY 138 (185) T ss_pred HHHHCCCCEEEEECCCCCHHHHHHHHH---HHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHEEHHHHH T ss_conf 997086758999748752047777445---530698988880789999999998788763012216657 |
|
| >TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU; InterPro: IPR014088 Members of this protein family include S-adenosylmethionine-dependent C-20 methyltransferase (BchU), part of the pathway of bacteriochlorophyll c production in photosynthetic green sulphur bacteria | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.00022 Score=44.92 Aligned_cols=137 Identities=18% Similarity=0.179 Sum_probs=97.2 Q ss_pred CCCEEEECCCCCHHHHHHHHHCCCCEEEEECCHHHHHHHHH------------HCCCCCHHHHCCCCCCCCHHHHHHHHH Q ss_conf 87099985998589999986269708997200113577531------------100120011014333522266666742 Q gi|254780322|r 47 FENALELHGITGIVGYTCMETKKIHRMIRAEISTEFSTLKR------------EVISCPLEEIPSISQSVDLILSPLNLH 114 (273) Q Consensus 47 ~~~vLdlGcGtG~~~~~l~~~~~~~~v~~~D~s~~~~~~~~------------~~~~~d~e~l~~~~~sfDli~s~~~l~ 114 (273) T Consensus 150 V~~lIDVGGGIGDI~AAl~~~FP~L~~T~~NL-P~A~DLV~EN~A~KG~ADR~~~~A~D~Y~E~YP~~--DAVLF~RILY 226 (306) T TIGR02716 150 VKKLIDVGGGIGDIAAALLKAFPELDVTLLNL-PSALDLVRENVAEKGLADRIRGVAVDIYKESYPEA--DAVLFSRILY 226 (306) T ss_pred CCEEEECCCCHHHHHHHHHHHCCCCCEEEECC-CCHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCC--HHHHHHHHHH T ss_conf 32543338887789999997377523231205-40556776655414510046631565033875771--1656778876 Q ss_pred CCCCHH--HHHHHHHHHHCCCCEEE-----EEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCC Q ss_conf 223469--99999999818787089-----84068676334778899875454268664216745999999999850898 Q gi|254780322|r 115 IINDTL--EMFSKINHMLKPGGMFL-----AAIPGIGTLHELRKALLKAETELTGGASPRVIPFMDIKSAGTLMEKSGFI 187 (273) Q Consensus 115 w~~d~~--~~l~~~~r~LkpgG~~~-----~s~~~~~~~~el~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~agf~ 187 (273) T Consensus 227 ~~N~Ql~T~l~~KAyDAl~SGGR~LILDMVI~DP~~PNyDYL~HY~~~------~GM~FSVL~FK~~A~Y~~~L~~~Gy~ 300 (306) T TIGR02716 227 SANEQLSTILLKKAYDALRSGGRLLILDMVIDDPENPNYDYLSHYLLA------IGMGFSVLEFKDQAVYKDLLRSLGYK 300 (306) T ss_pred HHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCCCCCCHHHHHHHHHH------CCCCCHHHHHHHCCCCHHHHHHCCCC T ss_conf 446789999999887522578807865434318567771468999987------16661012110023007999855972 Q ss_pred CEEEE Q ss_conf 54677 Q gi|254780322|r 188 SPIID 192 (273) Q Consensus 188 ~~~~~ 192 (273) T Consensus 301 DVTl~ 305 (306) T TIGR02716 301 DVTLV 305 (306) T ss_pred EEECC T ss_conf 01015 |
The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produce bacteriochlorophyll d.. |
| >pfam03492 Methyltransf_7 SAM dependent carboxyl methyltransferase | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.00011 Score=46.68 Aligned_cols=148 Identities=12% Similarity=0.114 Sum_probs=80.5 Q ss_pred CCCCEEEECCCCCHHHHHHHH--------H--------CCCCEEEEECCHHHHHH---H---------HHHCC---CCCH Q ss_conf 987099985998589999986--------2--------69708997200113577---5---------31100---1200 Q gi|254780322|r 46 TFENALELHGITGIVGYTCME--------T--------KKIHRMIRAEISTEFST---L---------KREVI---SCPL 94 (273) Q Consensus 46 ~~~~vLdlGcGtG~~~~~l~~--------~--------~~~~~v~~~D~s~~~~~---~---------~~~~~---~~d~ 94 (273) T Consensus 16 ~~~~IADlGCSsGpNtl~~vs~ii~~i~~~~~~~~~~~~pE~qvf~NDLP~NDFNtlF~sLp~~~~~~~~~f~~gvpGSF 95 (331) T pfam03492 16 NSIKIADLGCSSGPNTFLAVSNIIDTVEKKYQKENILEPPEFQVFFNDLPSNDFNTLFKLLPPFQKKKRSYFVSGVPGSF 95 (331) T ss_pred CCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCHHHHHHHCCHHHCCCCCEEEEECCCCC T ss_conf 85599981799975289999999999999986417999973899867899862788874084011378876999658643 Q ss_pred HHHCCCCCCCCHHHHHHHHHCCCCHHHHH---------------------------------------HHHHHHHCCCCE Q ss_conf 11014333522266666742223469999---------------------------------------999998187870 Q gi|254780322|r 95 EEIPSISQSVDLILSPLNLHIINDTLEMF---------------------------------------SKINHMLKPGGM 135 (273) Q Consensus 95 e~l~~~~~sfDli~s~~~l~w~~d~~~~l---------------------------------------~~~~r~LkpgG~ 135 (273) T Consensus 96 y~RLfP~~Slh~~~Ss~slHWLS~vP~~l~~~~~~~~Nkg~I~i~~~s~~~V~~AY~~Qf~~D~~~FL~~Ra~Elv~GG~ 175 (331) T pfam03492 96 YGRLFPRNSLHFVHSSYSLHWLSQVPKGLEDKESPAWNKGNIYISGASPEEVYKAYLDQFKKDFSLFLRARAEELVSGGL 175 (331) T ss_pred CCCCCCCCCEEEEEEHHHHHHHHHCCHHHHCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCE T ss_conf 25557876458875322567764087001067875567885697169988999999999999999999988998546865 Q ss_pred EEEEECCCCCCHH-------HHHHHHHHHH-HHHCCCC--------CCCCCCCCHHHHHHHHHHCC-CCCEEEEE Q ss_conf 8984068676334-------7788998754-5426866--------42167459999999998508-98546773 Q gi|254780322|r 136 FLAAIPGIGTLHE-------LRKALLKAET-ELTGGAS--------PRVIPFMDIKSAGTLMEKSG-FISPIIDQ 193 (273) Q Consensus 136 ~~~s~~~~~~~~e-------l~~~~~~a~~-~~~~~~~--------~~~~~~~~~~~~~~ll~~ag-f~~~~~~~ 193 (273) T Consensus 176 mvl~~~Gr~~~d~~~~~~~~~~~ll~~aL~dlv~eGlI~eekldsFNiP~Y~ps~eEv~~~Ie~eGsF~I~~le~ 250 (331) T pfam03492 176 MVLTFLGRPSVDPSETECGIFWDLLGDALNDLVSEGLIEEEKLDSFNIPIYAPSPEEVKEIIEKEGSFTIERLEI 250 (331) T ss_pred EEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHCCCEEEEEEEE T ss_conf 999960568998665664439999999999999859967999832488760799999999971069756567798 |
This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine. |
| >COG4798 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.0011 Score=40.71 Aligned_cols=129 Identities=19% Similarity=0.191 Sum_probs=75.8 Q ss_pred CCCCEEEECCCCCHHHHHHHHH-CCCCEEEEECCHHH----------HHHHHHH-------CCCCCHHHHCCCCCCCCHH Q ss_conf 9870999859985899999862-69708997200113----------5775311-------0012001101433352226 Q gi|254780322|r 46 TFENALELHGITGIVGYTCMET-KKIHRMIRAEISTE----------FSTLKRE-------VISCPLEEIPSISQSVDLI 107 (273) Q Consensus 46 ~~~~vLdlGcGtG~~~~~l~~~-~~~~~v~~~D~s~~----------~~~~~~~-------~~~~d~e~l~~~~~sfDli 107 (273) T Consensus 48 pg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~aN~e~~~~~~~A~~-~pq~~d~~ 126 (238) T COG4798 48 PGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPVYANVEVIGKPLVALG-APQKLDLV 126 (238) T ss_pred CCCEEEEEECCCCCHHHHHCHHCCCCEEEEEECCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCC-CCCCCCCC T ss_conf 99879998348850744411002875059885643432510140366666664222310455277500458-99765413 Q ss_pred HHHHHHHC-------CCCHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHH Q ss_conf 66667422-------23469999999998187870898406867633477889987545426866421674599999999 Q gi|254780322|r 108 LSPLNLHI-------INDTLEMFSKINHMLKPGGMFLAAIPGIGTLHELRKALLKAETELTGGASPRVIPFMDIKSAGTL 180 (273) Q Consensus 108 ~s~~~l~w-------~~d~~~~l~~~~r~LkpgG~~~~s~~~~~~~~el~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l 180 (273) T Consensus 127 ~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKPGGv~~V~dH~a~pG~~~~dt~----------~----~~ri~~a~V~a~ 192 (238) T COG4798 127 PTAQNYHDMHNKNIHPATAAKVNAAVFKALKPGGVYLVEDHRADPGSGLSDTI----------T----LHRIDPAVVIAE 192 (238) T ss_pred CCCHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCHHH----------H----HCCCCHHHHHHH T ss_conf 32111100110456852499999999985388847998740246898800224----------4----336575899999 Q ss_pred HHHCCCCCE Q ss_conf 985089854 Q gi|254780322|r 181 MEKSGFISP 189 (273) Q Consensus 181 l~~agf~~~ 189 (273) T Consensus 193 veaaGFkl~ 201 (238) T COG4798 193 VEAAGFKLE 201 (238) T ss_pred HHHHCCEEE T ss_conf 985132551 |
|
| >pfam04672 DUF574 Protein of unknown function (DUF574) | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.0015 Score=40.10 Aligned_cols=134 Identities=13% Similarity=0.159 Sum_probs=84.1 Q ss_pred CCEEEECCCC---CHHHHHHHHHCCCCEEEEECCHHHHHHHHHH-----------CCCCCHHHHC------CCCCCCCH- Q ss_conf 7099985998---5899999862697089972001135775311-----------0012001101------43335222- Q gi|254780322|r 48 ENALELHGIT---GIVGYTCMETKKIHRMIRAEISTEFSTLKRE-----------VISCPLEEIP------SISQSVDL- 106 (273) Q Consensus 48 ~~vLdlGcGt---G~~~~~l~~~~~~~~v~~~D~s~~~~~~~~~-----------~~~~d~e~l~------~~~~sfDl- 106 (273) T Consensus 71 rQFLDlGsGlPT~~nvHeVAq~~~P~aRVVYVD~DPvvlaHaraLL~~~~~~~t~~v~aDlrdp~~iL~~p~~~~~lD~~ 150 (268) T pfam04672 71 RQFLDIGTGLPTEPNVHQVAQRVAPESRVVYVDNDPIVLTHARALLTSTPEGATDYIHADVRDPEEILEHPEARRTLDFD 150 (268) T ss_pred EEEEEECCCCCCCCCCCHHHHHCCCCCEEEEECCCCHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHCCHHHHHHCCCC T ss_conf 05776056999999721466732998639998898279999999956898774699977777989986598788537878 Q ss_pred ----HHHHHHHHCCCC---HHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHH Q ss_conf ----666667422234---6999999999818787089840686763347788998754542686642167459999999 Q gi|254780322|r 107 ----ILSPLNLHIIND---TLEMFSKINHMLKPGGMFLAAIPGIGTLHELRKALLKAETELTGGASPRVIPFMDIKSAGT 179 (273) Q Consensus 107 ----i~s~~~l~w~~d---~~~~l~~~~r~LkpgG~~~~s~~~~~~~~el~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 179 (273) T Consensus 151 rPValll~~vLh~v~D~~~p~~iv~~l~d~l~pGS~L~ish~t~d~~p~~~~~~~~~~~--~~~~---p~~~Rs~~ei~~ 225 (268) T pfam04672 151 RPVALSLVAILHFVPDDDDPYGIVRRLMDALPAGSYLVLSHGTSDLNPELVEAVADVYA--KGGN---PLRLRSRAEVAR 225 (268) T ss_pred CCCHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHH--CCCC---CCCCCCHHHHHH T ss_conf 86134533443457861049999999997269976599984358888889999999997--0799---864059999999 Q ss_pred HHHHCCCCC Q ss_conf 998508985 Q gi|254780322|r 180 LMEKSGFIS 188 (273) Q Consensus 180 ll~~agf~~ 188 (273) T Consensus 226 ~f~--g~el 232 (268) T pfam04672 226 FFD--GLEL 232 (268) T ss_pred HCC--CCCC T ss_conf 759--9840 |
Family of uncharacterized proteins. |
| >COG2520 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.033 Score=32.20 Aligned_cols=136 Identities=16% Similarity=0.120 Sum_probs=91.8 Q ss_pred HHHHCCCCCCCEEEECCCCCHHHHHHHHHCCCCEEEEECCHHHHHH---HHH---------HCCCCCHHHHCCCCCCCCH Q ss_conf 8986368987099985998589999986269708997200113577---531---------1001200110143335222 Q gi|254780322|r 39 RLNMINQTFENALELHGITGIVGYTCMETKKIHRMIRAEISTEFST---LKR---------EVISCPLEEIPSISQSVDL 106 (273) Q Consensus 39 ~l~~~~~~~~~vLdlGcGtG~~~~~l~~~~~~~~v~~~D~s~~~~~---~~~---------~~~~~d~e~l~~~~~sfDl 106 (273) T Consensus 181 Rva~~v~~GE~V~DmFAGVGpfsi~~Ak~g~~~-V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~~~~~aDr 259 (341) T COG2520 181 RVAELVKEGETVLDMFAGVGPFSIPIAKKGRPK-VYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAPELGVADR 259 (341) T ss_pred HHHHHHCCCCEEEECCCCCCCCHHHHHHCCCCE-EEEEECCHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHCCCCCCE T ss_conf 998630699889983578654012466547863-9999459899999999998557655156796648885020466788 Q ss_pred HHHHHHHHCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCC Q ss_conf 66666742223469999999998187870898406867633477889987545426866421674599999999985089 Q gi|254780322|r 107 ILSPLNLHIINDTLEMFSKINHMLKPGGMFLAAIPGIGTLHELRKALLKAETELTGGASPRVIPFMDIKSAGTLMEKSGF 186 (273) Q Consensus 107 i~s~~~l~w~~d~~~~l~~~~r~LkpgG~~~~s~~~~~~~~el~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~agf 186 (273) T Consensus 260 Iim~~p~----~a~~fl~~A~~~~k~~g~iHyy~~~~e~~~~~~----------------------~~~~i~~~~~~~~~ 313 (341) T COG2520 260 IIMGLPK----SAHEFLPLALELLKDGGIIHYYEFVPEDDIEER----------------------PEKRIKSAARKGGY 313 (341) T ss_pred EEECCCC----CCHHHHHHHHHHHHCCCEEEEEECCCHHHCCCC----------------------HHHHHHHHHHHCCC T ss_conf 9838987----202338999998514867999962243411112----------------------59999998764367 Q ss_pred CCEEEEEEEEEEECC Q ss_conf 854677313688358 Q gi|254780322|r 187 ISPIIDQDTYTVYYK 201 (273) Q Consensus 187 ~~~~~~~~~~~~~~~ 201 (273) T Consensus 314 ~~~v~~~r~VksysP 328 (341) T COG2520 314 KVEVLKVRRVKSYSP 328 (341) T ss_pred CCEEEEEEEECCCCC T ss_conf 632788999323189 |
|
| >pfam08241 Methyltransf_11 Methyltransferase domain | Back alignment and domain information |
|---|
Probab=99.79 E-value=9.7e-20 Score=134.47 Aligned_cols=87 Identities=25% Similarity=0.402 Sum_probs=79.7 Q ss_pred EEECCCCCHHHHHHHHHCCCCEEEEECCHHHHHHHHHH--------CCCCCHHHHCCCCCCCCHHHHHHHHHCCCCHHHH Q ss_conf 99859985899999862697089972001135775311--------0012001101433352226666674222346999 Q gi|254780322|r 51 LELHGITGIVGYTCMETKKIHRMIRAEISTEFSTLKRE--------VISCPLEEIPSISQSVDLILSPLNLHIINDTLEM 122 (273) Q Consensus 51 LdlGcGtG~~~~~l~~~~~~~~v~~~D~s~~~~~~~~~--------~~~~d~e~l~~~~~sfDli~s~~~l~w~~d~~~~ 122 (273) T Consensus 1 LDiGcG~G~~~~~l~~~-~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~I~~~~~l~~~~~~~~~ 79 (95) T pfam08241 1 LDVGCGTGLLTEALARL-PGAQVTGVDLSPEMLALARKRAQEDGLTFVVGDAEDLPFPDESFDVVVSSLVLHHLPDPERA 79 (95) T ss_pred CCCCCCCCHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCEEEECCCHHHCCCHHHH T ss_conf 96462499999999845-79999999497899877663102669479980332467554568599983306646899999 Q ss_pred HHHHHHHHCCCCEEEE Q ss_conf 9999998187870898 Q gi|254780322|r 123 FSKINHMLKPGGMFLA 138 (273) Q Consensus 123 l~~~~r~LkpgG~~~~ 138 (273) T Consensus 80 l~~~~r~LkpgG~l~i 95 (95) T pfam08241 80 LREIARVLKPGGKLVI 95 (95) T ss_pred HHHHHHHCCCCEEEEC T ss_conf 9999987786949979 |
Members of this family are SAM dependent methyltransferases. |
| >pfam08242 Methyltransf_12 Methyltransferase domain | Back alignment and domain information |
|---|
Probab=99.77 E-value=3.7e-19 Score=131.08 Aligned_cols=86 Identities=22% Similarity=0.272 Sum_probs=75.9 Q ss_pred EEECCCCCHHHHHHHHHCCCCEEEEECCHHHHHHHHHHCC------------CCCHHHHCCCCCCCCHHHHHHHHHCCCC Q ss_conf 9985998589999986269708997200113577531100------------1200110143335222666667422234 Q gi|254780322|r 51 LELHGITGIVGYTCMETKKIHRMIRAEISTEFSTLKREVI------------SCPLEEIPSISQSVDLILSPLNLHIIND 118 (273) Q Consensus 51 LdlGcGtG~~~~~l~~~~~~~~v~~~D~s~~~~~~~~~~~------------~~d~e~l~~~~~sfDli~s~~~l~w~~d 118 (273) T Consensus 1 LDvGcG~G~~~~~l~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~~~vl~~~~~ 80 (98) T pfam08242 1 LDIGCGTGTLLRALLEALPGLEYTGVDISPAALEAAAERLAALGLLDAVRVRLDVLDAIDLDPGSFDVVVASNVLHHLAD 80 (98) T ss_pred CCCCCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHCCCCCHHHEEECCCHHHCCCCCCCEEEECCCHHHCCC T ss_conf 98863379999999987899889998598899999999998713453111000000022203589889961041772589 Q ss_pred HHHHHHHHHHHHCCCCEE Q ss_conf 699999999981878708 Q gi|254780322|r 119 TLEMFSKINHMLKPGGMF 136 (273) Q Consensus 119 ~~~~l~~~~r~LkpgG~~ 136 (273) T Consensus 81 ~~~~l~~~~r~LkpgG~l 98 (98) T pfam08242 81 PRAVLRNLRRLLKPGGVL 98 (98) T ss_pred HHHHHHHHHHHCCCCCCC T ss_conf 999999999974999899 |
Members of this family are SAM dependent methyltransferases. |
| >cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy) | Back alignment and domain information |
|---|
Probab=99.72 E-value=8.4e-18 Score=123.17 Aligned_cols=92 Identities=28% Similarity=0.421 Sum_probs=79.4 Q ss_pred CEEEECCCCCHHHHHHHHHCCCCEEEEECCHHHHHHHHH-----------HCCCCCHHHHC-CCCCCCCHHHHHHHHHCC Q ss_conf 099985998589999986269708997200113577531-----------10012001101-433352226666674222 Q gi|254780322|r 49 NALELHGITGIVGYTCMETKKIHRMIRAEISTEFSTLKR-----------EVISCPLEEIP-SISQSVDLILSPLNLHII 116 (273) Q Consensus 49 ~vLdlGcGtG~~~~~l~~~~~~~~v~~~D~s~~~~~~~~-----------~~~~~d~e~l~-~~~~sfDli~s~~~l~w~ 116 (273) T Consensus 1 rVLDiGcG~G~~~~~l~~~-~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~V~~~~~~~~~ 79 (107) T cd02440 1 RVLDLGCGTGALALALASG-PGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPPEADESFDVIISDPPLHHL 79 (107) T ss_pred CEEEEECCCCHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHCCCCCEEEECCCHHHCCHHHCCCEEEEEEECCEECC T ss_conf 9999988879999999956-898899998988899999998753278864671488678863205753199991750106 Q ss_pred -CCHHHHHHHHHHHHCCCCEEEEEEC Q ss_conf -3469999999998187870898406 Q gi|254780322|r 117 -NDTLEMFSKINHMLKPGGMFLAAIP 141 (273) Q Consensus 117 -~d~~~~l~~~~r~LkpgG~~~~s~~ 141 (273) T Consensus 80 ~~~~~~~l~~~~~~LkpgG~~~is~~ 105 (107) T cd02440 80 VEDLARFLEEARRLLKPGGVLVLTLV 105 (107) T ss_pred CCCHHHHHHHHHHHCCCCCEEEEEEE T ss_conf 51899999999987485819999998 |
There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). |
| >PRK11207 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=3.7e-14 Score=101.92 Aligned_cols=93 Identities=15% Similarity=0.126 Sum_probs=78.7 Q ss_pred CCCCEEEECCCCCHHHHHHHHHCCCCEEEEECCHHHHHHHHH-----------HCCCCCHHHHCCCCCCCCHHHHHHHHH Q ss_conf 987099985998589999986269708997200113577531-----------100120011014333522266666742 Q gi|254780322|r 46 TFENALELHGITGIVGYTCMETKKIHRMIRAEISTEFSTLKR-----------EVISCPLEEIPSISQSVDLILSPLNLH 114 (273) Q Consensus 46 ~~~~vLdlGcGtG~~~~~l~~~~~~~~v~~~D~s~~~~~~~~-----------~~~~~d~e~l~~~~~sfDli~s~~~l~ 114 (273) T Consensus 30 ~~g~~LDlgcG~Grna~~La~~G~--~VtavD~s~~al~~~~~~a~~~~l~~v~~~~~Dl~~~~~-~~~yDlIlstvv~~ 106 (198) T PRK11207 30 KPGRTLDLGCGNGRNSLYLAANGY--DVTAWDKNPMSIANLERIKAAENLDNLHTRVVDLNNLTF-DGEYDFILSTVVLM 106 (198) T ss_pred CCCCEEEECCCCCHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHHCCCCEEEEEEECCCCCCC-CCCCCEEEEEEEEE T ss_conf 997477724788786999986898--599997999999999999987599824656203123887-77705897864521 Q ss_pred CCC--CHHHHHHHHHHHHCCCCEEEEEEC Q ss_conf 223--469999999998187870898406 Q gi|254780322|r 115 IIN--DTLEMFSKINHMLKPGGMFLAAIP 141 (273) Q Consensus 115 w~~--d~~~~l~~~~r~LkpgG~~~~s~~ 141 (273) T Consensus 107 fl~p~~~p~iia~mq~~t~PGG~~LIV~~ 135 (198) T PRK11207 107 FLEAKTIPGLIANMQRCTKPGGYNLIVAA 135 (198) T ss_pred ECCHHHHHHHHHHHHHHCCCCCEEEEEEE T ss_conf 04866789999999996089948999997 |
|
| >PRK06202 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.9e-12 Score=91.97 Aligned_cols=88 Identities=11% Similarity=0.085 Sum_probs=70.3 Q ss_pred CCCCCCEEEECCCCCHHHHHHHHH----CCCCEEEEECCHHHHHHHHHH--------CCCCCHHHHCCCCCCCCHHHHHH Q ss_conf 689870999859985899999862----697089972001135775311--------00120011014333522266666 Q gi|254780322|r 44 NQTFENALELHGITGIVGYTCMET----KKIHRMIRAEISTEFSTLKRE--------VISCPLEEIPSISQSVDLILSPL 111 (273) Q Consensus 44 ~~~~~~vLdlGcGtG~~~~~l~~~----~~~~~v~~~D~s~~~~~~~~~--------~~~~d~e~l~~~~~sfDli~s~~ 111 (273) T Consensus 59 ~~r~~~VLDlGcG~Gdl~~~lar~a~~~g~~l~v~GiD~~~~ai~~Ar~~a~~~~~~~~~~~~d~l~~~~~~~DvV~~sl 138 (233) T PRK06202 59 PDRPLTVLDLGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAIRFARANARRRGVTFRFAVSDELVAEGERFDVVYSNH 138 (233) T ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHCCCCCCCEEEEEHHHHCCCCCCCCEEEHHH T ss_conf 78872899834787579999999997559963899977988999999873403698369973432024578875760324 Q ss_pred HHHCCCCHH--HHHHHHHHHHC Q ss_conf 742223469--99999999818 Q gi|254780322|r 112 NLHIINDTL--EMFSKINHMLK 131 (273) Q Consensus 112 ~l~w~~d~~--~~l~~~~r~Lk 131 (273) T Consensus 139 ~LHHf~d~ql~~ll~~~~~~ar 160 (233) T PRK06202 139 FLHHLDDADVVRLLADMAALAR 160 (233) T ss_pred HHHCCCHHHHHHHHHHHHHHCC T ss_conf 6864982999999999998638 |
|
| >pfam03848 TehB Tellurite resistance protein TehB | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.1e-11 Score=87.55 Aligned_cols=95 Identities=13% Similarity=0.049 Sum_probs=81.2 Q ss_pred CCCCCEEEECCCCCHHHHHHHHHCCCCEEEEECCHHHHHHHHH----------HCCCCCHHHHCCCCCCCCHHHHHHHHH Q ss_conf 8987099985998589999986269708997200113577531----------100120011014333522266666742 Q gi|254780322|r 45 QTFENALELHGITGIVGYTCMETKKIHRMIRAEISTEFSTLKR----------EVISCPLEEIPSISQSVDLILSPLNLH 114 (273) Q Consensus 45 ~~~~~vLdlGcGtG~~~~~l~~~~~~~~v~~~D~s~~~~~~~~----------~~~~~d~e~l~~~~~sfDli~s~~~l~ 114 (273) T Consensus 29 i~pgk~LDlgcG~GRNslyLa~~G~--~VtavD~n~~aL~~l~~ia~~e~l~i~~~~~Din~~~~~e-~YD~IisTVvfm 105 (192) T pfam03848 29 VKPGKALDLGCGQGRNSLFLSLLGY--DVTAVDHNENSIANLQDIKEKENLDIPTALYDINSASIDE-NYDFILSTVVLM 105 (192) T ss_pred CCCCCEEEECCCCCHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCC-CCCEEEEEEEEE T ss_conf 7997466604789731899986899--1799979999999999999970997526873155568767-768798888777 Q ss_pred CCCC--HHHHHHHHHHHHCCCCEEEEEECC Q ss_conf 2234--699999999981878708984068 Q gi|254780322|r 115 IIND--TLEMFSKINHMLKPGGMFLAAIPG 142 (273) Q Consensus 115 w~~d--~~~~l~~~~r~LkpgG~~~~s~~~ 142 (273) T Consensus 106 FL~~~~ip~iI~~mq~~T~pGGynlIv~am 135 (192) T pfam03848 106 FLQAERIPAIIANMQEHTNVGGYNLIVAAM 135 (192) T ss_pred ECCHHHHHHHHHHHHHHCCCCCEEEEEEEE T ss_conf 318678779999999852899889999761 |
|
| >COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.26 E-value=3.2e-11 Score=84.76 Aligned_cols=102 Identities=16% Similarity=0.226 Sum_probs=75.2 Q ss_pred HHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHCCCCEEEEECCHHHHHHHHHHCCCCC----------HHHHCCCC-CCC Q ss_conf 9978986368987099985998589999986269708997200113577531100120----------01101433-352 Q gi|254780322|r 36 IAFRLNMINQTFENALELHGITGIVGYTCMETKKIHRMIRAEISTEFSTLKREVISCP----------LEEIPSIS-QSV 104 (273) Q Consensus 36 l~~~l~~~~~~~~~vLdlGcGtG~~~~~l~~~~~~~~v~~~D~s~~~~~~~~~~~~~d----------~e~l~~~~-~sf 104 (273) T Consensus 152 cL~~Le~~~~~g~~vlDvGcGSGILaIAa~kLGA-~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~~~~~~~~~ 230 (300) T COG2264 152 CLEALEKLLKKGKTVLDVGCGSGILAIAAAKLGA-KKVVGVDIDPQAVEAARENARLNGVELLVQAKGFLLLEVPENGPF 230 (300) T ss_pred HHHHHHHHHCCCCEEEEECCCHHHHHHHHHHCCC-CEEEEECCCHHHHHHHHHHHHHCCCCHHHHCCCCCCHHHCCCCCC T ss_conf 9999998605898799826781599999998198-668997188899999999999769960220034563000136865 Q ss_pred CHHHHHHHHHCCCCHHHHHHHHHHHHCCCCEEEEEEC Q ss_conf 2266666742223469999999998187870898406 Q gi|254780322|r 105 DLILSPLNLHIINDTLEMFSKINHMLKPGGMFLAAIP 141 (273) Q Consensus 105 Dli~s~~~l~w~~d~~~~l~~~~r~LkpgG~~~~s~~ 141 (273) T Consensus 231 DvIVANILA~v---l~~La~~~~~~lkpgg~lIlSGI 264 (300) T COG2264 231 DVIVANILAEV---LVELAPDIKRLLKPGGRLILSGI 264 (300) T ss_pred CEEEEHHHHHH---HHHHHHHHHHHCCCCCEEEEEEE T ss_conf 68986052789---99999999987088936999862 |
|
| >PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.26 E-value=3.7e-11 Score=84.44 Aligned_cols=106 Identities=15% Similarity=0.195 Sum_probs=76.0 Q ss_pred HHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHCCCCEEEEECCHHHHHHHHHHCCC----CC-----HHHHCCCCC Q ss_conf 999999789863689870999859985899999862697089972001135775311001----20-----011014333 Q gi|254780322|r 32 VAKEIAFRLNMINQTFENALELHGITGIVGYTCMETKKIHRMIRAEISTEFSTLKREVIS----CP-----LEEIPSISQ 102 (273) Q Consensus 32 ~a~~l~~~l~~~~~~~~~vLdlGcGtG~~~~~l~~~~~~~~v~~~D~s~~~~~~~~~~~~----~d-----~e~l~~~~~ 102 (273) T Consensus 148 TT~lcl~~l~~~~~~~~~vLDvG~GSGILaIaA~klGa-~~v~a~DiD~~Av~~a~eN~~lN~v~~~~~~~~~~~~~~~~ 226 (298) T PRK00517 148 TTRLCLEWLEKLVLPGKTVLDVGCGSGILAIAAAKLGA-KPVLAIDIDPQAVEAARENAELNGVDDRLELYLPEDQPLEG 226 (298) T ss_pred HHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHCCC-CEEEEEECCHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCC T ss_conf 79999999984354688688715770699999997499-84999989899999999999986998426896166434467 Q ss_pred CCCHHHHHHHHHCCCCHHHHHHHHHHHHCCCCEEEEEEC Q ss_conf 522266666742223469999999998187870898406 Q gi|254780322|r 103 SVDLILSPLNLHIINDTLEMFSKINHMLKPGGMFLAAIP 141 (273) Q Consensus 103 sfDli~s~~~l~w~~d~~~~l~~~~r~LkpgG~~~~s~~ 141 (273) T Consensus 227 ~~DlvvANIla~v---l~~l~~~~~~~l~~~G~lilSGI 262 (298) T PRK00517 227 KADVIVANILANP---LIELAPDLAALVKPGGRLILSGI 262 (298) T ss_pred CCCEEEEECCHHH---HHHHHHHHHHHHCCCCEEEEECC T ss_conf 6468997315899---99999999997389979999278 |
|
| >pfam06325 PrmA Ribosomal protein L11 methyltransferase (PrmA) | Back alignment and domain information |
|---|
Probab=99.25 E-value=3e-11 Score=84.94 Aligned_cols=106 Identities=14% Similarity=0.167 Sum_probs=76.8 Q ss_pred HHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHCCCCEEEEECCHHHHHHHHHHCCCCC-----H---HHHCCCCCCC Q ss_conf 9999978986368987099985998589999986269708997200113577531100120-----0---1101433352 Q gi|254780322|r 33 AKEIAFRLNMINQTFENALELHGITGIVGYTCMETKKIHRMIRAEISTEFSTLKREVISCP-----L---EEIPSISQSV 104 (273) Q Consensus 33 a~~l~~~l~~~~~~~~~vLdlGcGtG~~~~~l~~~~~~~~v~~~D~s~~~~~~~~~~~~~d-----~---e~l~~~~~sf 104 (273) T Consensus 147 T~lcl~~l~~~~~~~~~vlD~GcGSGILaIaA~klGa-~~v~a~DiDp~Av~~a~eN~~~N~v~~~~~~~~~~~~~~~~~ 225 (294) T pfam06325 147 TALCLEALESLVKPGETVLDVGCGSGILAIAALKLGA-KKVVGVDIDPVAVRAAKENAELNGVEAQLEVYLPGDLPEGKA 225 (294) T ss_pred HHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHCCC-CCEEEEECCHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCC T ss_conf 9999999986503698678505650899999997599-968999888999999999999769983179964431556645 Q ss_pred CHHHHHHHHHCCCCHHHHHHHHHHHHCCCCEEEEEECC Q ss_conf 22666667422234699999999981878708984068 Q gi|254780322|r 105 DLILSPLNLHIINDTLEMFSKINHMLKPGGMFLAAIPG 142 (273) Q Consensus 105 Dli~s~~~l~w~~d~~~~l~~~~r~LkpgG~~~~s~~~ 142 (273) T Consensus 226 DlIvANIla~~L---~~l~~~~~~~l~~~G~lilSGil 260 (294) T pfam06325 226 DVVVANILADPL---IELAPDIYALVKPGGYLILSGIL 260 (294) T ss_pred CEEEEHHCHHHH---HHHHHHHHHHHCCCCEEEECCCC T ss_conf 789841089999---99999999973899899991782 |
This family consists of several Ribosomal protein L11 methyltransferase (EC:2.1.1.-) sequences. |
| >pfam05401 NodS Nodulation protein S (NodS) | Back alignment and domain information |
|---|
Probab=99.20 E-value=4e-11 Score=84.24 Aligned_cols=104 Identities=17% Similarity=0.160 Sum_probs=84.1 Q ss_pred CCCCCCCEEEECCCCCHHHHHHHHHCCCCEEEEECCHHHHHHHHHHCC---------CCCHHHHCCCCCCCCHHHHHHHH Q ss_conf 368987099985998589999986269708997200113577531100---------12001101433352226666674 Q gi|254780322|r 43 INQTFENALELHGITGIVGYTCMETKKIHRMIRAEISTEFSTLKREVI---------SCPLEEIPSISQSVDLILSPLNL 113 (273) Q Consensus 43 ~~~~~~~vLdlGcGtG~~~~~l~~~~~~~~v~~~D~s~~~~~~~~~~~---------~~d~e~l~~~~~sfDli~s~~~l 113 (273) T Consensus 40 p~~ry~~alE~GCa~G~lT~~LA~RC--drLla~Dvs~~Av~~Ar~Rla~~~hV~v~~~~vp~-~wP~~~FDLIV~SEVl 116 (201) T pfam05401 40 AQGTIANALEVGCAAGAFTERLAPYC--QRLTVIDVMPEAIARARLRMKKWSHISWIVSDVQQ-FSTNELFDLIVVAEVL 116 (201) T ss_pred CCHHHHHHCCCCCCCCHHHHHHHHHH--HHHHHHCCCHHHHHHHHHHHCCCCCCEEEECCCCC-CCCCCCEEEEEEEHHH T ss_conf 83433002043566248789999987--46732136299999999985579982898256666-5998886279751477 Q ss_pred HCC---CCHHHHHHHHHHHHCCCCEEEEEECCCCCCHHH Q ss_conf 222---346999999999818787089840686763347 Q gi|254780322|r 114 HII---NDTLEMFSKINHMLKPGGMFLAAIPGIGTLHEL 149 (273) Q Consensus 114 ~w~---~d~~~~l~~~~r~LkpgG~~~~s~~~~~~~~el 149 (273) T Consensus 117 YYL~d~a~lr~~~~~~v~~LaP~G~Lvfgsarda~crrw 155 (201) T pfam05401 117 YYLGDVAEMRGAVRNLVSMLAPDGQLVFGSARDANCRRW 155 (201) T ss_pred HHHCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHH T ss_conf 861879999999999999718996599730451066551 |
This family consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors. |
| >pfam03291 Pox_MCEL mRNA capping enzyme | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.9e-10 Score=80.33 Aligned_cols=102 Identities=17% Similarity=0.206 Sum_probs=77.2 Q ss_pred CCCCEEEECCCCCHHHHHHHHHCCCCEEEEECCHHHHHHHHHH---------------------CCCCCH------HHHC Q ss_conf 9870999859985899999862697089972001135775311---------------------001200------1101 Q gi|254780322|r 46 TFENALELHGITGIVGYTCMETKKIHRMIRAEISTEFSTLKRE---------------------VISCPL------EEIP 98 (273) Q Consensus 46 ~~~~vLdlGcGtG~~~~~l~~~~~~~~v~~~D~s~~~~~~~~~---------------------~~~~d~------e~l~ 98 (273) T Consensus 63 ~~~~VLDl~CGkGGDL~Kw~~~-~i~~~vgiDis~~sI~~A~~RY~~~~~~~~~~~~~~~f~~~f~~~D~~~~~l~~~~~ 141 (327) T pfam03291 63 PKRKVLDLDCGKGGDLEKYFKG-GISGLIGTDIAEVSIEQAQERYNDLNSRSKSKYYKFDFIAEFITGDCFVSSVREVFE 141 (327) T ss_pred CCCEEEEECCCCCCCHHHHHHC-CCCEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCHHHHHHHCC T ss_conf 8987998368664457889747-986899966899999999999998642114444566750012315621567877535 Q ss_pred CCCCCCCHHHHHHHHHCCCC----HHHHHHHHHHHHCCCCEEEEEECCCCCCHH Q ss_conf 43335222666667422234----699999999981878708984068676334 Q gi|254780322|r 99 SISQSVDLILSPLNLHIIND----TLEMFSKINHMLKPGGMFLAAIPGIGTLHE 148 (273) Q Consensus 99 ~~~~sfDli~s~~~l~w~~d----~~~~l~~~~r~LkpgG~~~~s~~~~~~~~e 148 (273) T Consensus 142 ~~~~~FDvVS~QFAiHY~Fese~~a~~~l~Nvs~~Lk~GG~FIGT~~d~~~i~~ 195 (327) T pfam03291 142 PGQRKFDIVSWQFAIHYSFESEEKARTMLRNLAELLASGGKFIGTTPDGDFIIK 195 (327) T ss_pred CCCCCCCEEEHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHH T ss_conf 778850377517878987648999999999999860589889999667899999 |
This family of enzymes are related to pfam03919. |
| >PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional | Back alignment and domain information |
|---|
Probab=99.15 E-value=3.4e-10 Score=78.81 Aligned_cols=118 Identities=14% Similarity=0.148 Sum_probs=89.0 Q ss_pred HHHHHHHCCCCCCCEEEECCCCCHHHHHHHHH-CCCCEEEEECCHHHHHHHHHHCCCCCHHHHC--------CCCCCCCH Q ss_conf 99789863689870999859985899999862-6970899720011357753110012001101--------43335222 Q gi|254780322|r 36 IAFRLNMINQTFENALELHGITGIVGYTCMET-KKIHRMIRAEISTEFSTLKREVISCPLEEIP--------SISQSVDL 106 (273) Q Consensus 36 l~~~l~~~~~~~~~vLdlGcGtG~~~~~l~~~-~~~~~v~~~D~s~~~~~~~~~~~~~d~e~l~--------~~~~sfDl 106 (273) T Consensus 42 Id~K~~l~-~~~~~VlDLGaAPG~WsQva~~~~~~~g~VigVDl~~~~pi~gv~~i~gDi~~~~~~~~i~~~~~~~~~Dv 120 (209) T PRK11188 42 IQQSDKLF-KPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPMDPIVGVDFLQGDFRDELVLKALLERVGDSKVDV 120 (209) T ss_pred HHHHHCCC-CCCCEEEEECCCCCHHHHHHHHHCCCCCEEEEEECCCCCCCCCCEEECCCCCCHHHHHHHHHHHCCCCCCE T ss_conf 99885645-78998998068997578999997399973999865304537896764034458899999999858987308 Q ss_pred HHHHHHHHCC----CCH-------HHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHH Q ss_conf 6666674222----346-------99999999981878708984068676334778899 Q gi|254780322|r 107 ILSPLNLHII----NDT-------LEMFSKINHMLKPGGMFLAAIPGIGTLHELRKALL 154 (273) Q Consensus 107 i~s~~~l~w~----~d~-------~~~l~~~~r~LkpgG~~~~s~~~~~~~~el~~~~~ 154 (273) T Consensus 121 VlSDmAPn~tG~~~~D~~~s~~L~~~al~~a~~~Lk~gG~fv~K~F~G~~~~~~~~~~k 179 (209) T PRK11188 121 VMSDMAPNMSGTPAVDIPRAMYLVELALDMCRQVLAPGGSFVVKVFQGEGFDEYLREIR 179 (209) T ss_pred EECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCHHHHHHHHH T ss_conf 96666656678703359999999999999999862679889999964879999999997 |
|
| >pfam01135 PCMT Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) | Back alignment and domain information |
|---|
Probab=99.12 E-value=3.2e-10 Score=78.98 Aligned_cols=104 Identities=15% Similarity=0.114 Sum_probs=78.0 Q ss_pred HHHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHH-CCCCEEEEECCHHHHHHHHHH-----------CCCCCHHHHC Q ss_conf 9999999789863689870999859985899999862-697089972001135775311-----------0012001101 Q gi|254780322|r 31 RVAKEIAFRLNMINQTFENALELHGITGIVGYTCMET-KKIHRMIRAEISTEFSTLKRE-----------VISCPLEEIP 98 (273) Q Consensus 31 ~~a~~l~~~l~~~~~~~~~vLdlGcGtG~~~~~l~~~-~~~~~v~~~D~s~~~~~~~~~-----------~~~~d~e~l~ 98 (273) T Consensus 60 ~~~a~ml~~L~-l-~~g~~VLeIGtGsGY~tAlLa~l~~~~g~V~~iE~~~~l~~~A~~~l~~~~~~nV~~~~gdg~~g~ 137 (205) T pfam01135 60 HMHAMMLELLE-L-KPGMRVLEIGSGSGYLTACFARMVGEVGRVVSIEHIPELVEIARRNLEKLGLENVIVVVGDGRQGW 137 (205) T ss_pred HHHHHHHHHCC-C-CCCCEEEEECCCCCHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHCCCCEEEEECCCCCCC T ss_conf 99999999707-8-999989996699659999999983878769998358999999999999848886589845645588 Q ss_pred CCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHCCCCEEEEEECC Q ss_conf 43335222666667422234699999999981878708984068 Q gi|254780322|r 99 SISQSVDLILSPLNLHIINDTLEMFSKINHMLKPGGMFLAAIPG 142 (273) Q Consensus 99 ~~~~sfDli~s~~~l~w~~d~~~~l~~~~r~LkpgG~~~~s~~~ 142 (273) T Consensus 138 ~~~apfD~Iiv~aa~~~iP~------~l~~qL~~gGrLv~pvg~ 175 (205) T pfam01135 138 PEFAPYDAIHVGAAAPEIPE------ALIDQLKEGGRLVIPVGP 175 (205) T ss_pred CCCCCCCEEEEEEECCCCCH------HHHHHCCCCCEEEEEECC T ss_conf 33398058999750676889------999962879789999878 |
|
| >PRK06922 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.4e-10 Score=81.08 Aligned_cols=102 Identities=18% Similarity=0.131 Sum_probs=83.3 Q ss_pred CCCCEEEECCCCCHHHHHHHHHCCCCEEEEECCHHHHHHHH----------HHCCCCCHHHHC--CCCCCCCHHHHHHHH Q ss_conf 98709998599858999998626970899720011357753----------110012001101--433352226666674 Q gi|254780322|r 46 TFENALELHGITGIVGYTCMETKKIHRMIRAEISTEFSTLK----------REVISCPLEEIP--SISQSVDLILSPLNL 113 (273) Q Consensus 46 ~~~~vLdlGcGtG~~~~~l~~~~~~~~v~~~D~s~~~~~~~----------~~~~~~d~e~l~--~~~~sfDli~s~~~l 113 (273) T Consensus 420 ~G~~ivdiG~GGGVMldli~E~~p~~~i~GIDiS~NVIe~L~kkK~~e~ksW~V~~gDAL~l~d~f~~eSvdTiv~sSIl 499 (679) T PRK06922 420 KGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNEGRSWNVIKGDAINLSSSFEKESVDTIVYSSIL 499 (679) T ss_pred CCCEEEEECCCCCHHHHHHHHHCCCCCCEEEECCHHHHHHHHHHHHHCCCCCEEECCCCCCCHHHCCCCCCCEEEEHHHH T ss_conf 47679986699621487667658998614666608899999887775489842321430361543475666468742778 Q ss_pred HCC-------------CCHHHHHHHHHHHHCCCCEEEEEECCCCCCH Q ss_conf 222-------------3469999999998187870898406867633 Q gi|254780322|r 114 HII-------------NDTLEMFSKINHMLKPGGMFLAAIPGIGTLH 147 (273) Q Consensus 114 ~w~-------------~d~~~~l~~~~r~LkpgG~~~~s~~~~~~~~ 147 (273) T Consensus 500 HElfSYie~dGkkfN~~vi~~~l~Saf~vLkpGGRiIIRDGImTE~k 546 (679) T PRK06922 500 HELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDGIMTEDK 546 (679) T ss_pred HHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCH T ss_conf 88886345667134799999999999987288864999457536888 |
|
| >COG4123 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.09 E-value=3.4e-10 Score=78.80 Aligned_cols=96 Identities=21% Similarity=0.287 Sum_probs=76.1 Q ss_pred CCCEEEECCCCCHHHHHHHHHCCCCEEEEECCHHHHHHHHHH------------CCCCCHHHHC--CCCCCCCHHHHHHH Q ss_conf 870999859985899999862697089972001135775311------------0012001101--43335222666667 Q gi|254780322|r 47 FENALELHGITGIVGYTCMETKKIHRMIRAEISTEFSTLKRE------------VISCPLEEIP--SISQSVDLILSPLN 112 (273) Q Consensus 47 ~~~vLdlGcGtG~~~~~l~~~~~~~~v~~~D~s~~~~~~~~~------------~~~~d~e~l~--~~~~sfDli~s~~~ 112 (273) T Consensus 45 ~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~~~~fD~Ii~NPP 124 (248) T COG4123 45 KGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKALVFASFDLIICNPP 124 (248) T ss_pred CCEEEEECCCCCHHHHHHHCCCCCCCEEEEEECHHHHHHHHHHHHHCCCHHHEEEEHHHHHHHHHCCCCCCCCEEEECCC T ss_conf 87698836894689999745587780799981799999999988618613401676430887654236565478995989 Q ss_pred HHC------------------CCCHHHHHHHHHHHHCCCCEEEEEECC Q ss_conf 422------------------234699999999981878708984068 Q gi|254780322|r 113 LHI------------------INDTLEMFSKINHMLKPGGMFLAAIPG 142 (273) Q Consensus 113 l~w------------------~~d~~~~l~~~~r~LkpgG~~~~s~~~ 142 (273) T Consensus 125 yf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~r~ 172 (248) T COG4123 125 YFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVHRP 172 (248) T ss_pred CCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHCCCCCEEEEEECH T ss_conf 878753348674665566322288999999999974679789999558 |
|
| >KOG1975 consensus | Back alignment and domain information |
|---|
Probab=99.08 E-value=2.2e-10 Score=79.87 Aligned_cols=104 Identities=18% Similarity=0.248 Sum_probs=79.8 Q ss_pred HHCCCCCCCEEEECCCCCHHHHHHHHHCCCCEEEEECCHHHHHHHHH-----------------HCCCCCH------HHH Q ss_conf 86368987099985998589999986269708997200113577531-----------------1001200------110 Q gi|254780322|r 41 NMINQTFENALELHGITGIVGYTCMETKKIHRMIRAEISTEFSTLKR-----------------EVISCPL------EEI 97 (273) Q Consensus 41 ~~~~~~~~~vLdlGcGtG~~~~~l~~~~~~~~v~~~D~s~~~~~~~~-----------------~~~~~d~------e~l 97 (273) T Consensus 112 ~~y~~~~~~~~~LgCGKGGDLlKw~-kAgI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~ 190 (389) T KOG1975 112 NLYTKRGDDVLDLGCGKGGDLLKWD-KAGIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLL 190 (389) T ss_pred HHHHCCCCCCCEECCCCCCCHHHHH-HHCCCCEEEEEHHHCCHHHHHHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHC T ss_conf 9986122300000567762076765-514563576534340099999999999866641365169997144166898742 Q ss_pred CCCCCCCCHHHHHHHHHCC----CCHHHHHHHHHHHHCCCCEEEEEECCCCC Q ss_conf 1433352226666674222----34699999999981878708984068676 Q gi|254780322|r 98 PSISQSVDLILSPLNLHII----NDTLEMFSKINHMLKPGGMFLAAIPGIGT 145 (273) Q Consensus 98 ~~~~~sfDli~s~~~l~w~----~d~~~~l~~~~r~LkpgG~~~~s~~~~~~ 145 (273) T Consensus 191 e~~dp~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIgTiPdsd~ 242 (389) T KOG1975 191 EFKDPRFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIGTIPDSDV 242 (389) T ss_pred CCCCCCCCEEEEEEEEEEEECCHHHHHHHHHHHHHHCCCCCEEEEECCCHHH T ss_conf 5789885556554567543133888999999899635888579984696899 |
|
| >PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.07 E-value=4.4e-10 Score=78.17 Aligned_cols=102 Identities=17% Similarity=0.120 Sum_probs=78.3 Q ss_pred HHHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHH-CCCCEEEEECCHHHHHHHHHH-----------CCCCCHHHHC Q ss_conf 9999999789863689870999859985899999862-697089972001135775311-----------0012001101 Q gi|254780322|r 31 RVAKEIAFRLNMINQTFENALELHGITGIVGYTCMET-KKIHRMIRAEISTEFSTLKRE-----------VISCPLEEIP 98 (273) Q Consensus 31 ~~a~~l~~~l~~~~~~~~~vLdlGcGtG~~~~~l~~~-~~~~~v~~~D~s~~~~~~~~~-----------~~~~d~e~l~ 98 (273) T Consensus 63 ~~~a~ml~~L~-l-~~~~~VLeIGtGsGY~tAlla~lvg~~g~V~siE~~~~l~~~A~~~l~~~~~~nv~~~~gdg~~G~ 140 (214) T PRK13942 63 HMVAIMCELLD-L-DEGQKVLEIGTGSGYHAAVVAEIVGKSGKVTTIERIPELAEKAKKNLKKLGYENVEVILGDGTKGY 140 (214) T ss_pred HHHHHHHHHHC-C-CCCCEEEEECCCCCHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHCCCCEEEEECCCCCCC T ss_conf 99999999727-9-999979996799529999999974767857999717999999999998637687589856756678 Q ss_pred CCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHCCCCEEEEEE Q ss_conf 433352226666674222346999999999818787089840 Q gi|254780322|r 99 SISQSVDLILSPLNLHIINDTLEMFSKINHMLKPGGMFLAAI 140 (273) Q Consensus 99 ~~~~sfDli~s~~~l~w~~d~~~~l~~~~r~LkpgG~~~~s~ 140 (273) T Consensus 141 ~~~apfD~Iiv~aa~~~iP~------~l~~qL~~gGrLV~Pv 176 (214) T PRK13942 141 EENAPYDRIYVTAAGPDIPK------PLLEQLKDGGIMVIPV 176 (214) T ss_pred CCCCCCCEEEEEECCCCCCH------HHHHHCCCCCEEEEEE T ss_conf 44598127999851765789------9999628895899998 |
|
| >TIGR00740 TIGR00740 methyltransferase, putative; InterPro: IPR005271 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.07 E-value=8.9e-10 Score=76.37 Aligned_cols=112 Identities=15% Similarity=0.179 Sum_probs=92.1 Q ss_pred HHHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHH--CCCCEEEEECCHHHHHHHHHH------------CCCCCHHH Q ss_conf 9999999789863689870999859985899999862--697089972001135775311------------00120011 Q gi|254780322|r 31 RVAKEIAFRLNMINQTFENALELHGITGIVGYTCMET--KKIHRMIRAEISTEFSTLKRE------------VISCPLEE 96 (273) Q Consensus 31 ~~a~~l~~~l~~~~~~~~~vLdlGcGtG~~~~~l~~~--~~~~~v~~~D~s~~~~~~~~~------------~~~~d~e~ 96 (273) T Consensus 46 fI~~nL~E~~~~kslp~~~vYDLGCS~G~~~l~~~R~I~~~~~~~igIDNS~pM~~~~~~~~~~y~~~~Pv~~~~~D~~~ 125 (247) T TIGR00740 46 FIGMNLAERFVPKSLPKPLVYDLGCSTGAATLSLRRNIQQDNIKIIGIDNSMPMLERCREHIKAYKNAIPVEVLCMDIRE 125 (247) T ss_pred HHHHHHHHHHHHHCCCCCCEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHHHHHHCCCCCEEEEHHHHHH T ss_conf 99877776543311688741223343235776653046878537988418888999999999874247882320102456 Q ss_pred HCCCCCCCCHHHHHHHHHCCC--CHHHHHHHHHHHHCCCCEEEEEECCCC Q ss_conf 014333522266666742223--469999999998187870898406867 Q gi|254780322|r 97 IPSISQSVDLILSPLNLHIIN--DTLEMFSKINHMLKPGGMFLAAIPGIG 144 (273) Q Consensus 97 l~~~~~sfDli~s~~~l~w~~--d~~~~l~~~~r~LkpgG~~~~s~~~~~ 144 (273) T Consensus 126 v~~~~A--S~~~L~F~LQFl~P~~R~~LL~KIY~~L~~nGvL~lsEK~~~ 173 (247) T TIGR00740 126 VEIKNA--SMVVLNFTLQFLRPEEREALLKKIYNGLNPNGVLVLSEKFMF 173 (247) T ss_pred HHHHHH--HHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCEEEEECCHHH T ss_conf 666554--688788776047823479999998741077866886320136 |
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order . Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI ), shared by other AdoMet-Mtases , is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments , although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases , , , . The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences . The proteins of this family are restricted to the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 0dentity. It is reasonable to predict equivalent function within this subfamily. . |
| >TIGR00406 prmA ribosomal protein L11 methyltransferase; InterPro: IPR004498 Ribosomal protein L11 methyltransferase (2 | Back alignment and domain information |
|---|
Probab=99.06 E-value=2.8e-10 Score=79.25 Aligned_cols=103 Identities=15% Similarity=0.249 Sum_probs=80.4 Q ss_pred HHHHHHHHHHCCCCC--CCEEEECCCCCHHHHHHHHHCCCCEEEEECCHHHHHHHHHHCCC--------------CCHHH Q ss_conf 999997898636898--70999859985899999862697089972001135775311001--------------20011 Q gi|254780322|r 33 AKEIAFRLNMINQTF--ENALELHGITGIVGYTCMETKKIHRMIRAEISTEFSTLKREVIS--------------CPLEE 96 (273) Q Consensus 33 a~~l~~~l~~~~~~~--~~vLdlGcGtG~~~~~l~~~~~~~~v~~~D~s~~~~~~~~~~~~--------------~d~e~ 96 (273) T Consensus 181 T~LCLe~L~~~d~k~kh~~viD~GCGSGIL~IAa~~LGa-~~~~g~D~DP~Ave~~r~N~~lN~v~~~~~~~~~~~vPe~ 259 (330) T TIGR00406 181 TSLCLELLEDLDLKDKHKKVIDVGCGSGILSIAALKLGA-AKVVGIDIDPLAVESARKNAELNQVSDRLQVKLENSVPEL 259 (330) T ss_pred HHHHHHHHHCCCCCCCCCEEEEECCCHHHHHHHHHHHHH-HHEEEECCCHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCC T ss_conf 899999874014777665478712671789999997512-3112213772899999976874588645764320578753 Q ss_pred HCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHCCCCEEEEE Q ss_conf 0143335222666667422234699999999981878708984 Q gi|254780322|r 97 IPSISQSVDLILSPLNLHIINDTLEMFSKINHMLKPGGMFLAA 139 (273) Q Consensus 97 l~~~~~sfDli~s~~~l~w~~d~~~~l~~~~r~LkpgG~~~~s 139 (273) T Consensus 260 ~~~~e~~~DViVANiLA~vi---~~L~p~~~~L~~~~G~lilS 299 (330) T TIGR00406 260 EQPIEGKADVIVANILAEVI---KELYPQFSRLVKPGGHLILS 299 (330) T ss_pred CCCCCCCCCEEEECCHHHHH---HHHHHHHHHHCCCCCCEEEH T ss_conf 45322566757880024578---76413551310689965741 |
1.1 from EC) is required for the methylation of ribosomal protein L11. It forms a bifunctional operon in Escherichia coli with panF (pantothenate transport).; GO: 0008276 protein methyltransferase activity, 0006479 protein amino acid methylation. |
| >PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.2e-09 Score=75.58 Aligned_cols=105 Identities=15% Similarity=0.163 Sum_probs=78.1 Q ss_pred HHHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHH-CCCCEEEEECCHHHHHHHHHH------------CCCCCHHHH Q ss_conf 9999999789863689870999859985899999862-697089972001135775311------------001200110 Q gi|254780322|r 31 RVAKEIAFRLNMINQTFENALELHGITGIVGYTCMET-KKIHRMIRAEISTEFSTLKRE------------VISCPLEEI 97 (273) Q Consensus 31 ~~a~~l~~~l~~~~~~~~~vLdlGcGtG~~~~~l~~~-~~~~~v~~~D~s~~~~~~~~~------------~~~~d~e~l 97 (273) T Consensus 59 ~~~a~ml~~L~~--~~~~~VLeIGtGsGY~tAlla~l~~~~g~V~siE~~~~L~~~A~~~l~~l~~~n~v~v~~gdg~~G 136 (205) T PRK13944 59 HMVAMMCELIEP--RPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRG 136 (205) T ss_pred HHHHHHHHHHCC--CCCCEEEEECCCCCHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCCCCCCCEEEECCCCCC T ss_conf 999999997068--999989997898519999999983747717999536999999999999859863306797655657 Q ss_pred CCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHCCCCEEEEEECCC Q ss_conf 1433352226666674222346999999999818787089840686 Q gi|254780322|r 98 PSISQSVDLILSPLNLHIINDTLEMFSKINHMLKPGGMFLAAIPGI 143 (273) Q Consensus 98 ~~~~~sfDli~s~~~l~w~~d~~~~l~~~~r~LkpgG~~~~s~~~~ 143 (273) T Consensus 137 ~~~~apfD~Iiv~aa~~~iP~------~l~~QL~~gGrLV~Pvg~~ 176 (205) T PRK13944 137 LEKHAPFDAIIVTAAASTIPS------ALVRQLKDGGVLVIPVEEG 176 (205) T ss_pred CCCCCCCCEEEEEEECCCCCH------HHHHHCCCCCEEEEEECCC T ss_conf 743498048999850776899------9998548797999998789 |
|
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.02 E-value=6.4e-10 Score=77.20 Aligned_cols=95 Identities=21% Similarity=0.248 Sum_probs=70.9 Q ss_pred CCCEEEECCCCCHHHHHHHHHCCCCEEEEECCHHHHHHHHHH------------CCCCC-HHHHCCCCCCCCHHHHHHHH Q ss_conf 870999859985899999862697089972001135775311------------00120-01101433352226666674 Q gi|254780322|r 47 FENALELHGITGIVGYTCMETKKIHRMIRAEISTEFSTLKRE------------VISCP-LEEIPSISQSVDLILSPLNL 113 (273) Q Consensus 47 ~~~vLdlGcGtG~~~~~l~~~~~~~~v~~~D~s~~~~~~~~~------------~~~~d-~e~l~~~~~sfDli~s~~~l 113 (273) T Consensus 136 ~~~ILDLGTGSGcIaISLa~e~p~a~v~avDIS~~AL~vAk~Na~~~~v~~ri~fi~sdwfe~--l~~~kFDlIVSNPPY 213 (503) T PRK01544 136 FLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFEN--IGKQKFDFIVSNPPY 213 (503) T ss_pred CCEEEEECCCHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCCCCCCEEEEECCCHHC--CCCCCCCEEEECCCC T ss_conf 772788466679999999986789989999898999999999999808820179996553101--588872479838998 Q ss_pred HCCCC------------H--------------HHHHHHHHHHHCCCCEEEEEECCC Q ss_conf 22234------------6--------------999999999818787089840686 Q gi|254780322|r 114 HIIND------------T--------------LEMFSKINHMLKPGGMFLAAIPGI 143 (273) Q Consensus 114 ~w~~d------------~--------------~~~l~~~~r~LkpgG~~~~s~~~~ 143 (273) T Consensus 214 I~~~e~~~L~~eV~~yEP~lAL~ggeDGL~~Yr~Ia~~a~~~Lkp~G~l~lEIGy~ 269 (503) T PRK01544 214 ISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILEIGFK 269 (503) T ss_pred CCHHHHHHCCHHHHCCCCHHHHCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCC T ss_conf 87566665276653169378864887628999999998898528898899997878 |
|
| >pfam01728 FtsJ FtsJ-like methyltransferase | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.1e-09 Score=75.79 Aligned_cols=103 Identities=15% Similarity=0.153 Sum_probs=74.3 Q ss_pred CCCCCCEEEECCCCCHHHHHHHHHCCCCEEEEECCHHHHHHHHHHCCCCCHHHHC-------CCCCCCCHHHHHHHHHCC Q ss_conf 6898709998599858999998626970899720011357753110012001101-------433352226666674222 Q gi|254780322|r 44 NQTFENALELHGITGIVGYTCMETKKIHRMIRAEISTEFSTLKREVISCPLEEIP-------SISQSVDLILSPLNLHII 116 (273) Q Consensus 44 ~~~~~~vLdlGcGtG~~~~~l~~~~~~~~v~~~D~s~~~~~~~~~~~~~d~e~l~-------~~~~sfDli~s~~~l~w~ 116 (273) T Consensus 19 ~~~~~~vlDLg~aPGgwsq~~~~~~~~~~v~~vDl~~~~~~~~~~~i~gDi~~~~~~~~i~~~~~~~~DlV~sD~a~~~~ 98 (176) T pfam01728 19 KPGGKTVLDLGAAPGGFSQVLLERGAKGRVVAVDLGPMKPIQGVTFLRGDITDPETLEKLLELLPGKVDLVLCDGAPNVS 98 (176) T ss_pred CCCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEECCCCCCCCCCEEECCCCCCHHHHHHHHHHCCCCCCEEEECCCCCCC T ss_conf 87999999968999769999998566873999973446567784565167668789999999739984689733665656 Q ss_pred -----------CCHHHHHHHHHHHHCCCCEEEEEECCCCCC Q ss_conf -----------346999999999818787089840686763 Q gi|254780322|r 117 -----------NDTLEMFSKINHMLKPGGMFLAAIPGIGTL 146 (273) Q Consensus 117 -----------~d~~~~l~~~~r~LkpgG~~~~s~~~~~~~ 146 (273) T Consensus 99 g~~~~d~~~s~~L~~~~l~~a~~~L~~gG~fv~K~f~~~~~ 139 (176) T pfam01728 99 GLENTDSFISLRLVLAALLLALEVLRPGGNFVVKLFKGFEF 139 (176) T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCC T ss_conf 77334789999999999999999824376399999827876 |
This family consists of FtsJ from various bacterial and archaeal sources FtsJ is a methyltransferase, but actually has no effect on cell division. FtsJ's substrate is the 23S rRNA. The 1.5 A crystal structure of FtsJ in complex with its cofactor S-adenosylmethionine revealed that FtsJ has a methyltransferase fold. This family also includes the N terminus of flaviviral NS5 protein. It has been hypothesized that the N-terminal domain of NS5 is a methyltransferase involved in viral RNA capping. |
| >pfam03141 DUF248 Putative methyltransferase | Back alignment and domain information |
|---|
Probab=99.02 E-value=8.7e-11 Score=82.25 Aligned_cols=114 Identities=14% Similarity=0.186 Sum_probs=76.4 Q ss_pred HHHHHHHHHHHHCC--CCCCCEEEECCCCCHHHHHHHHHCCC-CEEEEECCHHHHHHHHHH----CCCC--CHHHHCCCC Q ss_conf 99999997898636--89870999859985899999862697-089972001135775311----0012--001101433 Q gi|254780322|r 31 RVAKEIAFRLNMIN--QTFENALELHGITGIVGYTCMETKKI-HRMIRAEISTEFSTLKRE----VISC--PLEEIPSIS 101 (273) Q Consensus 31 ~~a~~l~~~l~~~~--~~~~~vLdlGcGtG~~~~~l~~~~~~-~~v~~~D~s~~~~~~~~~----~~~~--d~e~l~~~~ 101 (273) T Consensus 100 ~Yid~i~~~ip~~~~~~~vRt~LDvGCGVASfGayLl~r~vltMS~AP~D~HeaQVQfALERGiPA~igvlgT~rLPyPs 179 (506) T pfam03141 100 AYIDFLAQVIPLIAWGGRVRTALDVGCGVASFGAYLLSRDVLTMSFAPKDVHEAQVQFALERGVPAMLGVLGTRRLPYPS 179 (506) T ss_pred HHHHHHHHHCCCCCCCCCEEEEEECCCCEECHHHHHHCCCCEEEEECCCCCHHHHHHHHHHCCCHHHHHHHHCCCCCCCC T ss_conf 99999998567555798568999768872103777632784588734764118889999971852566564035358875 Q ss_pred CCCCHHHHHHH-HHCCCCHHHHHHHHHHHHCCCCEEEEEECCCC Q ss_conf 35222666667-42223469999999998187870898406867 Q gi|254780322|r 102 QSVDLILSPLN-LHIINDTLEMFSKINHMLKPGGMFLAAIPGIG 144 (273) Q Consensus 102 ~sfDli~s~~~-l~w~~d~~~~l~~~~r~LkpgG~~~~s~~~~~ 144 (273) T Consensus 180 ~sFDm~HCsRC~IpW~~~dG~~LlEvdRvLRPGGYfV~S~pPv~ 223 (506) T pfam03141 180 RSFDMAHCSRCLIPWHANDGILLLEVDRVLRPGGYFVLSGPPVY 223 (506) T ss_pred CCCCHHHHCCCCCCCCCCCCEEEEEEEHCCCCCCEEEECCCCCC T ss_conf 33012442245674104797788654000047866994678655 |
Members of this family of hypothetical plant proteins are probably methyltransferases: several of the aligned sequences either match the methyltransferase profile, or contain a SAM-binding motif. A protein from Arabidopsis thaliana contains both. Several family members are described as ankyrin like. |
| >PRK12335 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=98.93 E-value=1.5e-09 Score=75.11 Aligned_cols=97 Identities=16% Similarity=0.102 Sum_probs=79.3 Q ss_pred CCCCCEEEECCCCCHHHHHHHHHCCCCEEEEECCHHHHHHHHH----------HCCCCCHHHHCCCCCCCCHHHHHHHHH Q ss_conf 8987099985998589999986269708997200113577531----------100120011014333522266666742 Q gi|254780322|r 45 QTFENALELHGITGIVGYTCMETKKIHRMIRAEISTEFSTLKR----------EVISCPLEEIPSISQSVDLILSPLNLH 114 (273) Q Consensus 45 ~~~~~vLdlGcGtG~~~~~l~~~~~~~~v~~~D~s~~~~~~~~----------~~~~~d~e~l~~~~~sfDli~s~~~l~ 114 (273) T Consensus 121 i~pgkaLDLGCG~GRNsLyLa~~Gf--dVTA~D~N~~sl~~L~~ia~~E~L~i~~~~yDIN~a~l~~-~YDfI~STVV~m 197 (289) T PRK12335 121 VKPGKALDLGCGQGRNSLYLALLGF--DVTAVDINQASLENLQQIAEKENLNIRAGSYDINSASLQE-EYDFILSTVVLM 197 (289) T ss_pred CCCCCEEEECCCCCCCHHHHHHCCC--CEEEEECCHHHHHHHHHHHHHCCCCCCCEEECCCCCCCCC-CCCEEEEEEEEE T ss_conf 6887466604788822788975798--4258868999999999999971988772575166666677-767899967886 Q ss_pred CCC--CHHHHHHHHHHHHCCCCEEEEEECCCC Q ss_conf 223--469999999998187870898406867 Q gi|254780322|r 115 IIN--DTLEMFSKINHMLKPGGMFLAAIPGIG 144 (273) Q Consensus 115 w~~--d~~~~l~~~~r~LkpgG~~~~s~~~~~ 144 (273) T Consensus 198 FL~~~~ip~iI~nMQ~~T~~gGyNlIV~am~T 229 (289) T PRK12335 198 FLNPERIPDIIKNMQEHTNPGGYNLIVCAMDT 229 (289) T ss_pred EECHHHHHHHHHHHHHHCCCCCEEEEEEECCC T ss_conf 42877869999999984479986899987147 |
|
| >KOG1269 consensus | Back alignment and domain information |
|---|
Probab=98.90 E-value=2.1e-09 Score=74.19 Aligned_cols=98 Identities=13% Similarity=0.078 Sum_probs=83.6 Q ss_pred CCCCCCEEEECCCCCHHHHHHHHHCCCCEEEEECCHHHHHHHHH------------HCCCCCHHHHCCCCCCCCHHHHHH Q ss_conf 68987099985998589999986269708997200113577531------------100120011014333522266666 Q gi|254780322|r 44 NQTFENALELHGITGIVGYTCMETKKIHRMIRAEISTEFSTLKR------------EVISCPLEEIPSISQSVDLILSPL 111 (273) Q Consensus 44 ~~~~~~vLdlGcGtG~~~~~l~~~~~~~~v~~~D~s~~~~~~~~------------~~~~~d~e~l~~~~~sfDli~s~~ 111 (273) T Consensus 108 ~~~~~~~~~~~~g~~~~~~~i~-~f~~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~fedn~fd~v~~ld 186 (364) T KOG1269 108 CFPGSKVLDVGTGVGGPSRYIA-VFKKAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMPFEDNTFDGVRFLE 186 (364) T ss_pred CCCCCCCCCCCCCCCCHHHHHH-HHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCEEHHHHHCCCCCCCCCCCEEEEE T ss_conf 7654111224767675167788-862577517876799999988777888764202352255514887746667489876 Q ss_pred HHHCCCCHHHHHHHHHHHHCCCCEEEEEECC Q ss_conf 7422234699999999981878708984068 Q gi|254780322|r 112 NLHIINDTLEMFSKINHMLKPGGMFLAAIPG 142 (273) Q Consensus 112 ~l~w~~d~~~~l~~~~r~LkpgG~~~~s~~~ 142 (273) T Consensus 187 ~~~~~~~~~~~y~Ei~rv~kpGG~~i~~e~i 217 (364) T KOG1269 187 VVCHAPDLEKVYAEIYRVLKPGGLFIVKEWI 217 (364) T ss_pred ECCCCCCHHHHHHHHHCCCCCCCEEEEHHHH T ss_conf 1244786999999885036777168848888 |
|
| >PRK07402 precorrin-6B methylase; Provisional | Back alignment and domain information |
|---|
Probab=98.87 E-value=2.6e-08 Score=67.77 Aligned_cols=103 Identities=20% Similarity=0.210 Sum_probs=75.8 Q ss_pred CCCCCEEEECCCCCHHHHHHHHHCCCCEEEEECCHHHHHHHHHH-----------CCCCCH-HHHCCCCCCCCHHHHHHH Q ss_conf 89870999859985899999862697089972001135775311-----------001200-110143335222666667 Q gi|254780322|r 45 QTFENALELHGITGIVGYTCMETKKIHRMIRAEISTEFSTLKRE-----------VISCPL-EEIPSISQSVDLILSPLN 112 (273) Q Consensus 45 ~~~~~vLdlGcGtG~~~~~l~~~~~~~~v~~~D~s~~~~~~~~~-----------~~~~d~-e~l~~~~~sfDli~s~~~ 112 (273) T Consensus 39 ~~~~~vwDIGaGtGsVsiEaa~~~~~g~V~AIE~~~~a~~li~~N~~rfgv~nv~ii~g~ape~L~~l~p~pD~vFIGG- 117 (196) T PRK07402 39 EPDSVLWDIGAGTGTIPVEAALLCPKGRVIAIERDEEVANLIRRNCDRFGVKNVEVIEGSAPECLAQLAPAPDRICIEG- 117 (196) T ss_pred CCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHCCCCCCEEEECC- T ss_conf 9999999947887799999998789988999976888999999989972999879997263666840899999999848- Q ss_pred HHCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHH Q ss_conf 422234699999999981878708984068676334778 Q gi|254780322|r 113 LHIINDTLEMFSKINHMLKPGGMFLAAIPGIGTLHELRK 151 (273) Q Consensus 113 l~w~~d~~~~l~~~~r~LkpgG~~~~s~~~~~~~~el~~ 151 (273) T Consensus 118 ---g~~l~~il~~~~~~L~pgGriVinaitLetl~~~~~ 153 (196) T PRK07402 118 ---GRPIKEILQAVWQYLKPGGRLVATASSLEGLYAISE 153 (196) T ss_pred ---CCCHHHHHHHHHHHCCCCCEEEEEEEEHHHHHHHHH T ss_conf ---968899999999867999899998570988999999 |
|
| >PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.87 E-value=8.6e-09 Score=70.61 Aligned_cols=96 Identities=14% Similarity=0.100 Sum_probs=75.3 Q ss_pred HHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHH-CCCCEEEEECCHHHHHHHHHH-----------CCCCCHHHHCCCC Q ss_conf 9999789863689870999859985899999862-697089972001135775311-----------0012001101433 Q gi|254780322|r 34 KEIAFRLNMINQTFENALELHGITGIVGYTCMET-KKIHRMIRAEISTEFSTLKRE-----------VISCPLEEIPSIS 101 (273) Q Consensus 34 ~~l~~~l~~~~~~~~~vLdlGcGtG~~~~~l~~~-~~~~~v~~~D~s~~~~~~~~~-----------~~~~d~e~l~~~~ 101 (273) T Consensus 65 A~MlElL~-l-~pg~rVLEIGTGSGYqAAlLA~Lvg~~G~V~TIE~~~~L~~~Ar~~L~~lG~~NV~vv~GDG~~G~pe~ 142 (317) T PRK13943 65 ALFMEWVG-L-DKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYGVPEF 142 (317) T ss_pred HHHHHHHC-C-CCCCEEEEECCCCCHHHHHHHHHHCCCCEEEEEEECHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCC T ss_conf 99999717-8-999868996577438999999984878759999867999999999999779986499979988888667 Q ss_pred CCCCHHHHHHHHHCCCCHHHHHHHHHHHHCCCCEEE Q ss_conf 352226666674222346999999999818787089 Q gi|254780322|r 102 QSVDLILSPLNLHIINDTLEMFSKINHMLKPGGMFL 137 (273) Q Consensus 102 ~sfDli~s~~~l~w~~d~~~~l~~~~r~LkpgG~~~ 137 (273) T Consensus 143 APYD~IIVTAaa~~IP~------aLldQLk~GGRLV 172 (317) T PRK13943 143 SPYDVIFVTVGVDEVPE------TWFTQLKEGGRVI 172 (317) T ss_pred CCCCEEEEEECCCCCCH------HHHHHCCCCCEEE T ss_conf 99778999852764899------9999618596999 |
|
| >TIGR00477 tehB tellurite resistance protein TehB; InterPro: IPR004537 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB | Back alignment and domain information |
|---|
Probab=98.86 E-value=4e-09 Score=72.58 Aligned_cols=91 Identities=14% Similarity=0.084 Sum_probs=75.4 Q ss_pred CCCCCEEEECCCCCHHHHHHHHHCCCCEEEEECCHHHHHHHH-----H------HCCCCCHHHHCCCCCCCCHHHHHHHH Q ss_conf 898709998599858999998626970899720011357753-----1------10012001101433352226666674 Q gi|254780322|r 45 QTFENALELHGITGIVGYTCMETKKIHRMIRAEISTEFSTLK-----R------EVISCPLEEIPSISQSVDLILSPLNL 113 (273) Q Consensus 45 ~~~~~vLdlGcGtG~~~~~l~~~~~~~~v~~~D~s~~~~~~~-----~------~~~~~d~e~l~~~~~sfDli~s~~~l 113 (273) T Consensus 72 v~PcKtLDLGCGqGrNsLyLsl~GY--DV~awD~n~~siA~v~~~k~~EnL~nl~t~~yDiNaa~~~e-~YDFI~sTVVf 148 (239) T TIGR00477 72 VKPCKTLDLGCGQGRNSLYLSLAGY--DVDAWDHNEASIASVEEIKEKENLDNLRTDVYDINAAALDE-DYDFILSTVVF 148 (239) T ss_pred CCCCCEEECCCCCCHHHHHHHHHCC--CCEEECCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCC-CCCEEEEEHHH T ss_conf 3798653268888537899976168--41012168668875998887626711004655433554012-78742102012 Q ss_pred HCC--CCHHHHHHHHHHHHCCCCEEEE Q ss_conf 222--3469999999998187870898 Q gi|254780322|r 114 HII--NDTLEMFSKINHMLKPGGMFLA 138 (273) Q Consensus 114 ~w~--~d~~~~l~~~~r~LkpgG~~~~ 138 (273) T Consensus 149 ~FL~a~rvP~iIanMq~hT~pGGYNLI 175 (239) T TIGR00477 149 MFLEAERVPEIIANMQEHTKPGGYNLI 175 (239) T ss_pred HHHCCCCCHHHHHHHHHHCCCCCCEEE T ss_conf 210588772678865874679873222 |
When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases . Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite.; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0046690 response to tellurium ion, 0005737 cytoplasm. |
| >COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=98.83 E-value=3.7e-08 Score=66.88 Aligned_cols=101 Identities=21% Similarity=0.205 Sum_probs=77.3 Q ss_pred CCCCCEEEECCCCCHHHHHHHHHCCCCEEEEECCHHHHHHHH---HH--------CCCCCHH-HHCCCCCCCCHHHHHHH Q ss_conf 898709998599858999998626970899720011357753---11--------0012001-10143335222666667 Q gi|254780322|r 45 QTFENALELHGITGIVGYTCMETKKIHRMIRAEISTEFSTLK---RE--------VISCPLE-EIPSISQSVDLILSPLN 112 (273) Q Consensus 45 ~~~~~vLdlGcGtG~~~~~l~~~~~~~~v~~~D~s~~~~~~~---~~--------~~~~d~e-~l~~~~~sfDli~s~~~ 112 (273) T Consensus 33 ~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~L~~~~-~~daiFIGGg 111 (187) T COG2242 33 RPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGVDNLEVVEGDAPEALPDLP-SPDAIFIGGG 111 (187) T ss_pred CCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHCCCCEEEEECCCHHHHCCCC-CCCEEEECCC T ss_conf 999989995788668999999739885599992588899999999998499967999546457636999-9999998798 Q ss_pred HHCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHH Q ss_conf 42223469999999998187870898406867633477 Q gi|254780322|r 113 LHIINDTLEMFSKINHMLKPGGMFLAAIPGIGTLHELR 150 (273) Q Consensus 113 l~w~~d~~~~l~~~~r~LkpgG~~~~s~~~~~~~~el~ 150 (273) T Consensus 112 ----~~i~~ile~~~~~l~~ggrlV~naitlE~~~~a~ 145 (187) T COG2242 112 ----GNIEEILEAAWERLKPGGRLVANAITLETLAKAL 145 (187) T ss_pred ----CCHHHHHHHHHHHCCCCCEEEEEEECHHHHHHHH T ss_conf ----7778999999997186876999860088899999 |
|
| >COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.79 E-value=1.9e-08 Score=68.62 Aligned_cols=100 Identities=16% Similarity=0.148 Sum_probs=77.0 Q ss_pred HHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHCCCCEEEEECCHHHHHHHHHH-----------CCCCCHHHHCCC Q ss_conf 999999789863689870999859985899999862697089972001135775311-----------001200110143 Q gi|254780322|r 32 VAKEIAFRLNMINQTFENALELHGITGIVGYTCMETKKIHRMIRAEISTEFSTLKRE-----------VISCPLEEIPSI 100 (273) Q Consensus 32 ~a~~l~~~l~~~~~~~~~vLdlGcGtG~~~~~l~~~~~~~~v~~~D~s~~~~~~~~~-----------~~~~d~e~l~~~ 100 (273) T Consensus 60 ~vA~m~~~L~~--~~g~~VLEIGtGsGY~aAvla~l~~--~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~gDG~~G~~~ 135 (209) T COG2518 60 MVARMLQLLEL--KPGDRVLEIGTGSGYQAAVLARLVG--RVVSIERIEELAEQARRNLETLGYENVTVRHGDGSKGWPE 135 (209) T ss_pred HHHHHHHHHCC--CCCCEEEEECCCCHHHHHHHHHHHC--EEEEEEECHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCC T ss_conf 99999997489--9998688877783099999999748--4999997199999999999976987349997885568877 Q ss_pred CCCCCHHHHHHHHHCCCCHHHHHHHHHHHHCCCCEEEEEEC Q ss_conf 33522266666742223469999999998187870898406 Q gi|254780322|r 101 SQSVDLILSPLNLHIINDTLEMFSKINHMLKPGGMFLAAIP 141 (273) Q Consensus 101 ~~sfDli~s~~~l~w~~d~~~~l~~~~r~LkpgG~~~~s~~ 141 (273) T Consensus 136 ~aPyD~I~Vtaaa~~vP~------~Ll~QL~~gGrlv~PvG 170 (209) T COG2518 136 EAPYDRIIVTAAAPEVPE------ALLDQLKPGGRLVIPVG 170 (209) T ss_pred CCCCCEEEEEECCCCCCH------HHHHHCCCCCEEEEEEC T ss_conf 798478999503577998------99985065988999985 |
|
| >PRK04457 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.76 E-value=7.2e-08 Score=65.22 Aligned_cols=117 Identities=15% Similarity=0.031 Sum_probs=86.1 Q ss_pred HHHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHCCCCEEEEECCHHHHHHHHHHC------------CCCCHH-HH Q ss_conf 99999997898636898709998599858999998626970899720011357753110------------012001-10 Q gi|254780322|r 31 RVAKEIAFRLNMINQTFENALELHGITGIVGYTCMETKKIHRMIRAEISTEFSTLKREV------------ISCPLE-EI 97 (273) Q Consensus 31 ~~a~~l~~~l~~~~~~~~~vLdlGcGtG~~~~~l~~~~~~~~v~~~D~s~~~~~~~~~~------------~~~d~e-~l 97 (273) T Consensus 52 ~Ytr~Mm~~LLf~-p~Pk~vl~iGLGgGsl~k~~~~~~P~~~i~~VEIdp~Vi~vAr~~F~lP~dd~Rl~V~~~Dg~~fv 130 (262) T PRK04457 52 SYSRAMMGFLLFN-PRPQHILQIGLGGGSFAKFIDTYLPDTRQTAVEINPQVIAVARNHFELPFEDEKFEIIEADGAEYI 130 (262) T ss_pred HHHHHHHHHHHCC-CCCCEEEEEECCHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHCCCCCCCCCEEEEECCHHHHH T ss_conf 8899999998658-997869999257019999999839867589998788999999986579999972699955389998 Q ss_pred CCCCCCCCHHHHHHHHHCC----CCHHHHHHHHHHHHCCCCEEEEEECCCCCCHH Q ss_conf 1433352226666674222----34699999999981878708984068676334 Q gi|254780322|r 98 PSISQSVDLILSPLNLHII----NDTLEMFSKINHMLKPGGMFLAAIPGIGTLHE 148 (273) Q Consensus 98 ~~~~~sfDli~s~~~l~w~----~d~~~~l~~~~r~LkpgG~~~~s~~~~~~~~e 148 (273) T Consensus 131 ~~~~~~~DvI~vD~fd~~g~~~~L~t~~Fy~~c~~~L~~~Gvlv~Nl~~~~~~~~ 185 (262) T PRK04457 131 KVFPASTDVILVDGFDGEQIVDALVTQPFFRDCRNALSSDGVFVTNLWSGDKRYQ 185 (262) T ss_pred HHCCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCCCHH T ss_conf 5486777889996889888860008299999999864989399998688998659 |
|
| >pfam10294 Methyltransf_16 Putative methyltransferase | Back alignment and domain information |
|---|
Probab=98.73 E-value=7e-08 Score=65.28 Aligned_cols=97 Identities=19% Similarity=0.110 Sum_probs=71.0 Q ss_pred CCCCEEEECCCCCHHHHHHHHHCCCCEEEEECCHHHHHHHHHHCC----------------CCC-HHHHCCCCCCCCHHH Q ss_conf 987099985998589999986269708997200113577531100----------------120-011014333522266 Q gi|254780322|r 46 TFENALELHGITGIVGYTCMETKKIHRMIRAEISTEFSTLKREVI----------------SCP-LEEIPSISQSVDLIL 108 (273) Q Consensus 46 ~~~~vLdlGcGtG~~~~~l~~~~~~~~v~~~D~s~~~~~~~~~~~----------------~~d-~e~l~~~~~sfDli~ 108 (273) T Consensus 44 ~~k~VLELGaG~GL~Gi~~a~~~~~~~V~lTD~~~-~l~~l~~Nv~~N~~~~~~v~~~~LdWg~~~~~~~~~~~~fD~Il 122 (171) T pfam10294 44 SGKNVLELGSGCGLVGIAVALLLPGASVTITDLEE-AIELMKKNIELNKALSSKVTAKVLDWGEELPDDVFDPHPVDLIL 122 (171) T ss_pred CCCEEEEECCCCCHHHHHHHHHCCCCEEEECCCHH-HHHHHHHHHHHCCCCCCCEEEEEEECCCCCCHHHCCCCCCCEEE T ss_conf 68767870566575899999857985899638378-99999999997057899669998110898843331467767899 Q ss_pred HHHHHHCCCCHHHHHHHHHHHHCCCCEEEEEECCC Q ss_conf 66674222346999999999818787089840686 Q gi|254780322|r 109 SPLNLHIINDTLEMFSKINHMLKPGGMFLAAIPGI 143 (273) Q Consensus 109 s~~~l~w~~d~~~~l~~~~r~LkpgG~~~~s~~~~ 143 (273) T Consensus 123 ~sD~iY~~~~~~~L~~ti~~ll~~~g~~lla~~~R 157 (171) T pfam10294 123 AADCVYNEDAFPLLVKTLKDLLGKETVILVAYKKR 157 (171) T ss_pred EECEEECHHHHHHHHHHHHHHHCCCCEEEEEECCC T ss_conf 71213357779999999999958998999997820 |
|
| >KOG1271 consensus | Back alignment and domain information |
|---|
Probab=98.73 E-value=1.7e-08 Score=68.89 Aligned_cols=107 Identities=18% Similarity=0.243 Sum_probs=78.1 Q ss_pred CCCCCCCEEEECCCCCHHHHHHHHHCCCCEEEEECCHHHHHHHHH------------HCCCCCHHHHCCCCCCCCHHHHH Q ss_conf 368987099985998589999986269708997200113577531------------10012001101433352226666 Q gi|254780322|r 43 INQTFENALELHGITGIVGYTCMETKKIHRMIRAEISTEFSTLKR------------EVISCPLEEIPSISQSVDLILSP 110 (273) Q Consensus 43 ~~~~~~~vLdlGcGtG~~~~~l~~~~~~~~v~~~D~s~~~~~~~~------------~~~~~d~e~l~~~~~sfDli~s~ 110 (273) T Consensus 64 v~~~A~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~~~~~~qfdlvlDK 143 (227) T KOG1271 64 VSKQADRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDPDFLSGQFDLVLDK 143 (227) T ss_pred HCCCCCCEEECCCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCEEEEEEC T ss_conf 02243211661579618899988713888864531578899999878875278853168873225775555432389605 Q ss_pred HHHHC---CCCH-----HHHHHHHHHHHCCCCEEEEEECCCCCCHHHH Q ss_conf 67422---2346-----9999999998187870898406867633477 Q gi|254780322|r 111 LNLHI---INDT-----LEMFSKINHMLKPGGMFLAAIPGIGTLHELR 150 (273) Q Consensus 111 ~~l~w---~~d~-----~~~l~~~~r~LkpgG~~~~s~~~~~~~~el~ 150 (273) T Consensus 144 GT~DAisLs~d~~~~r~~~Y~d~v~~ll~~~gifvItS-CN~T~dELv 190 (227) T KOG1271 144 GTLDAISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITS-CNFTKDELV 190 (227) T ss_pred CCEEEEECCCCCCCCCEEEEHHHHHHCCCCCCEEEEEE-CCCCHHHHH T ss_conf 74122550777766543443556863038896799985-576589999 |
|
| >KOG1331 consensus | Back alignment and domain information |
|---|
Probab=98.73 E-value=2.2e-08 Score=68.19 Aligned_cols=104 Identities=16% Similarity=0.164 Sum_probs=83.2 Q ss_pred HHHCCCCCCCEEEECCCCCHHHHHHHHHCCCCEEEEECCHHHHHHHHH-----HCCCCCHHHHCCCCCCCCHHHHHHHHH Q ss_conf 986368987099985998589999986269708997200113577531-----100120011014333522266666742 Q gi|254780322|r 40 LNMINQTFENALELHGITGIVGYTCMETKKIHRMIRAEISTEFSTLKR-----EVISCPLEEIPSISQSVDLILSPLNLH 114 (273) Q Consensus 40 l~~~~~~~~~vLdlGcGtG~~~~~l~~~~~~~~v~~~D~s~~~~~~~~-----~~~~~d~e~l~~~~~sfDli~s~~~l~ 114 (273) T Consensus 40 l~~~~~-gsv~~d~gCGngky~~----~~p~~~~ig~D~c~~l~~~ak~~~~~~~~~ad~l~~p~~~~s~d~~lsiavih 114 (293) T KOG1331 40 LDSQPT-GSVGLDVGCGNGKYLG----VNPLCLIIGCDLCTGLLGGAKRSGGDNVCRADALKLPFREESFDAALSIAVIH 114 (293) T ss_pred HHCCCC-CCEEEECCCCCCCCCC----CCCCCEEEECCHHHHHCCCCCCCCCCEEEHHHHHCCCCCCCCCCCCHHHHHHH T ss_conf 850687-6404542468765576----79863154030223220533347986256124442898787600032335444 Q ss_pred CCCCH---HHHHHHHHHHHCCCCEEEEEECCCCCCHH Q ss_conf 22346---99999999981878708984068676334 Q gi|254780322|r 115 IINDT---LEMFSKINHMLKPGGMFLAAIPGIGTLHE 148 (273) Q Consensus 115 w~~d~---~~~l~~~~r~LkpgG~~~~s~~~~~~~~e 148 (273) T Consensus 115 hlsT~~RR~~~l~e~~r~lrpgg~~lvyvwa~~q~~~ 151 (293) T KOG1331 115 HLSTRERRERALEELLRVLRPGGNALVYVWALEQHQS 151 (293) T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCEEEEEEHHHCCCC T ss_conf 4436778999999999872678856899850112474 |
|
| >COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.71 E-value=2e-07 Score=62.68 Aligned_cols=97 Identities=16% Similarity=0.061 Sum_probs=75.0 Q ss_pred CCEEEECCCCCHHHHHHHHHCCCCEEEEECCHHHHHHHHH-----------HCCCCCHHHH---CCCCCCCCHHHHHHHH Q ss_conf 7099985998589999986269708997200113577531-----------1001200110---1433352226666674 Q gi|254780322|r 48 ENALELHGITGIVGYTCMETKKIHRMIRAEISTEFSTLKR-----------EVISCPLEEI---PSISQSVDLILSPLNL 113 (273) Q Consensus 48 ~~vLdlGcGtG~~~~~l~~~~~~~~v~~~D~s~~~~~~~~-----------~~~~~d~e~l---~~~~~sfDli~s~~~l 113 (273) T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~~~l~~~~~~~sl~~I~i~FPD 129 (227) T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAVEVLDYLIPDGSLDKIYINFPD 129 (227) T ss_pred CEEEEECCCCCHHHHHHHHHCCCCCEEEEEEEHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHCCCCCCEEEEEEECCC T ss_conf 66999688898789999987898778999973489999999999829984699807799999735898856579997999 Q ss_pred HCCCCH--------HHHHHHHHHHHCCCCEEEEEECCCC Q ss_conf 222346--------9999999998187870898406867 Q gi|254780322|r 114 HIINDT--------LEMFSKINHMLKPGGMFLAAIPGIG 144 (273) Q Consensus 114 ~w~~d~--------~~~l~~~~r~LkpgG~~~~s~~~~~ 144 (273) T Consensus 130 PWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aTD~~~ 168 (227) T COG0220 130 PWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFATDNEE 168 (227) T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEEEECCHH T ss_conf 998766433214788999999997268978999726799 |
|
| >pfam02390 Methyltransf_4 Putative methyltransferase | Back alignment and domain information |
|---|
Probab=98.70 E-value=6.4e-08 Score=65.51 Aligned_cols=99 Identities=16% Similarity=0.088 Sum_probs=74.0 Q ss_pred CCCCCCEEEECCCCCHHHHHHHHHCCCCEEEEECCHHHHHHHHH------------HCCCCCHHH-HC--CCCCCCCHHH Q ss_conf 68987099985998589999986269708997200113577531------------100120011-01--4333522266 Q gi|254780322|r 44 NQTFENALELHGITGIVGYTCMETKKIHRMIRAEISTEFSTLKR------------EVISCPLEE-IP--SISQSVDLIL 108 (273) Q Consensus 44 ~~~~~~vLdlGcGtG~~~~~l~~~~~~~~v~~~D~s~~~~~~~~------------~~~~~d~e~-l~--~~~~sfDli~ 108 (273) T Consensus 18 ~~~~pi~lEIG~G~G~~l~~~A~~~p~~n~iGiEi~~~~v~~~~~k~~~~~~l~Ni~~~~~da~~~l~~~~~~~~l~~i~ 97 (199) T pfam02390 18 GNEQPLFLEIGCGMGDFLVAMAKKNPDKLFIGIEIRVPGVDKALKKIIALRGLQNLRILCGDAMKLLPNLFPDGSLQKIF 97 (199) T ss_pred CCCCCEEEEECCCCCHHHHHHHHHCCCCCEEEEEECHHHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHCCCCCEEEEE T ss_conf 99994499973688899999999789987899995059999999999984577737876047999999757988642799 Q ss_pred HHHHHHCCCCH--------HHHHHHHHHHHCCCCEEEEEECC Q ss_conf 66674222346--------99999999981878708984068 Q gi|254780322|r 109 SPLNLHIINDT--------LEMFSKINHMLKPGGMFLAAIPG 142 (273) Q Consensus 109 s~~~l~w~~d~--------~~~l~~~~r~LkpgG~~~~s~~~ 142 (273) T Consensus 98 i~FPDPWpKkrH~KRRli~~~fl~~~~~~Lk~gG~l~~~TD~ 139 (199) T pfam02390 98 INFPDPWPKKRHHKRRLLQPEFLKEYARVLKPGGVLHLATDV 139 (199) T ss_pred EECCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEEEECC T ss_conf 967999876442440007999999999963889899998289 |
This is a family of putative methyltransferases. The aligned region contains the GXGXG S-AdoMet binding site suggesting a putative methyltransferase activity. |
| >PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.68 E-value=8.6e-08 Score=64.77 Aligned_cols=98 Identities=18% Similarity=0.060 Sum_probs=75.0 Q ss_pred CCCCCEEEECCCCCHHHHHHHHHCCCCEEEEECCHHHHHHHHH-----------HCCCCCHHH-HC--CCCCCCCHHHHH Q ss_conf 8987099985998589999986269708997200113577531-----------100120011-01--433352226666 Q gi|254780322|r 45 QTFENALELHGITGIVGYTCMETKKIHRMIRAEISTEFSTLKR-----------EVISCPLEE-IP--SISQSVDLILSP 110 (273) Q Consensus 45 ~~~~~vLdlGcGtG~~~~~l~~~~~~~~v~~~D~s~~~~~~~~-----------~~~~~d~e~-l~--~~~~sfDli~s~ 110 (273) T Consensus 53 ~~~p~~lEIGfG~G~~l~~~A~~~P~~~fIGiE~~~~gv~~~~~~~~~~~l~Ni~i~~~da~~~l~~~~~~~s~~~i~i~ 132 (229) T PRK00121 53 NDAPIHLEIGFGRGEFLVEMAKANPDINFIGIEIHEPGVAKALKKIEEAGLKNLRLLCGDAVEVLEHFLPDGSLDRIYLN 132 (229) T ss_pred CCCCEEEEECCCCCHHHHHHHHHCCCCCEEEEEEEHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHCCCCCCCEEEEC T ss_conf 99943999615896999999986888868999961699999999999829983898834789999971464541404671 Q ss_pred HHHHCCCCH--------HHHHHHHHHHHCCCCEEEEEECC Q ss_conf 674222346--------99999999981878708984068 Q gi|254780322|r 111 LNLHIINDT--------LEMFSKINHMLKPGGMFLAAIPG 142 (273) Q Consensus 111 ~~l~w~~d~--------~~~l~~~~r~LkpgG~~~~s~~~ 142 (273) T Consensus 133 FPDPWpKkrH~KRRli~~~fl~~~~~~Lk~~G~i~~~TD~ 172 (229) T PRK00121 133 FPDPWPKKRHHKRRLVQPEFLELYARVLKPGGEFHFATDW 172 (229) T ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEEEECC T ss_conf 7999976320240128999999999857999889998187 |
|
| >PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=98.66 E-value=2.6e-07 Score=62.02 Aligned_cols=101 Identities=16% Similarity=0.076 Sum_probs=73.2 Q ss_pred CCCCCEEEECCCCCHHHHHHHHHCCCCEEEEECCHHHHHHHHHHC-----------CCCCHHHHCCCCCCCCHHHHHHHH Q ss_conf 898709998599858999998626970899720011357753110-----------012001101433352226666674 Q gi|254780322|r 45 QTFENALELHGITGIVGYTCMETKKIHRMIRAEISTEFSTLKREV-----------ISCPLEEIPSISQSVDLILSPLNL 113 (273) Q Consensus 45 ~~~~~vLdlGcGtG~~~~~l~~~~~~~~v~~~D~s~~~~~~~~~~-----------~~~d~e~l~~~~~sfDli~s~~~l 113 (273) T Consensus 29 ~~~~vvwDIGaGsGsvsiEaa~~~p~~~V~AvE~~~~~~~~i~~N~~~fg~~nv~~i~g~Ap-~~l~-~~pD~vFIGGs- 105 (186) T PRK08287 29 HRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPAALRLIKENRQRFGCGNIDIIPGEAP-ITLT-GKADAIFMGGS- 105 (186) T ss_pred CCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHCCCCEEEEECCCC-HHCC-CCCCEEEEECC- T ss_conf 99999999578877899999997899889999379899999999899729998799937781-1035-78984999747- Q ss_pred HCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHH Q ss_conf 2223469999999998187870898406867633477 Q gi|254780322|r 114 HIINDTLEMFSKINHMLKPGGMFLAAIPGIGTLHELR 150 (273) Q Consensus 114 ~w~~d~~~~l~~~~r~LkpgG~~~~s~~~~~~~~el~ 150 (273) T Consensus 106 --gg~l~~il~~~~~~L~~gGriVinavtlet~~~a~ 140 (186) T PRK08287 106 --GGHLTAIIDWALGHLHPGGRLVLNFILQENLHSAL 140 (186) T ss_pred --CCCHHHHHHHHHHHCCCCCEEEEEEEEHHHHHHHH T ss_conf --89889999999975799989999826087799999 |
|
| >pfam00891 Methyltransf_2 O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.66 E-value=3.3e-07 Score=61.35 Aligned_cols=93 Identities=17% Similarity=0.175 Sum_probs=73.9 Q ss_pred CCCCEEEECCCCCHHHHHHHHHCCCCEEEEECCHHHHHHHHH-----HCCCCCHHHHCCCCCCCCHHHHHHHHHCCCCHH Q ss_conf 987099985998589999986269708997200113577531-----100120011014333522266666742223469 Q gi|254780322|r 46 TFENALELHGITGIVGYTCMETKKIHRMIRAEISTEFSTLKR-----EVISCPLEEIPSISQSVDLILSPLNLHIINDTL 120 (273) Q Consensus 46 ~~~~vLdlGcGtG~~~~~l~~~~~~~~v~~~D~s~~~~~~~~-----~~~~~d~e~l~~~~~sfDli~s~~~l~w~~d~~ 120 (273) T Consensus 101 ~~~~vvDvGGG~G~~~~~i~~~~P~l~~~v~Dlp-~v~~~a~~~~rv~~~~gdff~-~~P~--aD~y~l~~vLH~w~d~~ 176 (239) T pfam00891 101 GLSSLVDVGGGTGALAAAIVRAYPHIKGIVFDLP-HVIADAPSADRVEFVGGDFFE-SVPE--ADAILLKWVLHDWSDED 176 (239) T ss_pred CCCEEEEECCCCHHHHHHHHHHCCCCEEEEEECH-HHHHHCCCCCCEEEECCCCCC-CCCC--CCEEEEEHHHCCCCHHH T ss_conf 7876899679818999999998899838986468-778627646854884487777-8888--51776401431599999 Q ss_pred --HHHHHHHHHHCCCCEEEEEECC Q ss_conf --9999999981878708984068 Q gi|254780322|r 121 --EMFSKINHMLKPGGMFLAAIPG 142 (273) Q Consensus 121 --~~l~~~~r~LkpgG~~~~s~~~ 142 (273) T Consensus 177 ~~~iL~~~~~al~~~grllI~e~v 200 (239) T pfam00891 177 CVKILKRCYEALPPGGKVIVVEMV 200 (239) T ss_pred HHHHHHHHHHHCCCCCEEEEEEEC T ss_conf 999999999977999889999744 |
This family includes a range of O-methyltransferases. These enzymes utilize S-adenosyl methionine. |
| >COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.61 E-value=1.8e-07 Score=62.84 Aligned_cols=96 Identities=19% Similarity=0.248 Sum_probs=75.5 Q ss_pred CCCCEEEECCCCCHHHHHHHH-HCCCCEEEEECCHHHHHHHHHHCC------------CCCHHHHCCCCCCCCHHHHHHH Q ss_conf 987099985998589999986-269708997200113577531100------------1200110143335222666667 Q gi|254780322|r 46 TFENALELHGITGIVGYTCME-TKKIHRMIRAEISTEFSTLKREVI------------SCPLEEIPSISQSVDLILSPLN 112 (273) Q Consensus 46 ~~~~vLdlGcGtG~~~~~l~~-~~~~~~v~~~D~s~~~~~~~~~~~------------~~d~e~l~~~~~sfDli~s~~~ 112 (273) T Consensus 94 pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~~~~-~vDav~LD-- 170 (256) T COG2519 94 PGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREGIDEE-DVDAVFLD-- 170 (256) T ss_pred CCCEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCC-CCCEEEEC-- T ss_conf 887899815680599999999648884599999527899999999998424561378705400024655-46779975-- Q ss_pred HHCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCH Q ss_conf 42223469999999998187870898406867633 Q gi|254780322|r 113 LHIINDTLEMFSKINHMLKPGGMFLAAIPGIGTLH 147 (273) Q Consensus 113 l~w~~d~~~~l~~~~r~LkpgG~~~~s~~~~~~~~ 147 (273) T Consensus 171 ---mp~PW~~le~~~~~Lkpgg~~~~y~P~veQv~ 202 (256) T COG2519 171 ---LPDPWNVLEHVSDALKPGGVVVVYSPTVEQVE 202 (256) T ss_pred ---CCCHHHHHHHHHHHHCCCCEEEEECCCHHHHH T ss_conf ---89848999999987179967999839789999 |
|
| >TIGR00438 rrmJ ribosomal RNA large subunit methyltransferase J; InterPro: IPR004512 The ribosomal RNA large subunit methyltransferase J 2 | Back alignment and domain information |
|---|
Probab=98.56 E-value=1.7e-07 Score=63.10 Aligned_cols=107 Identities=17% Similarity=0.179 Sum_probs=84.1 Q ss_pred CCCCCEEEECCCCCHHHHHHHHH-CCCCEEEEECCHHHH--HHHHHHCCCCCHH----------HHCCCCCCCCHHHHHH Q ss_conf 89870999859985899999862-697089972001135--7753110012001----------1014333522266666 Q gi|254780322|r 45 QTFENALELHGITGIVGYTCMET-KKIHRMIRAEISTEF--STLKREVISCPLE----------EIPSISQSVDLILSPL 111 (273) Q Consensus 45 ~~~~~vLdlGcGtG~~~~~l~~~-~~~~~v~~~D~s~~~--~~~~~~~~~~d~e----------~l~~~~~sfDli~s~~ 111 (273) T Consensus 31 k~G~~VlDLGAAPGGWsQva~~~~G~kG~ViA~Dl~~~k~FP~~nv~fi~GDftdee~l~ki~~~~g~dekk~DVV~SDa 110 (192) T TIGR00438 31 KPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMKGFPIENVDFIRGDFTDEEVLNKILERVGDDEKKVDVVMSDA 110 (192) T ss_pred ECCCEEEECCCCCCCHHHHHHHHHCCCCEEEEEECCCCCCCCCCCEEEEECCCCCHHHHHHHHHHCCCCCCEEEEEEECC T ss_conf 07886786578987387788776068533899854557885646614754476787899999985789874377898526 Q ss_pred HHHC----CCCH-------HHHHHHHHHHHCCCCEEEEEECCCCCCHHHHH Q ss_conf 7422----2346-------99999999981878708984068676334778 Q gi|254780322|r 112 NLHI----INDT-------LEMFSKINHMLKPGGMFLAAIPGIGTLHELRK 151 (273) Q Consensus 112 ~l~w----~~d~-------~~~l~~~~r~LkpgG~~~~s~~~~~~~~el~~ 151 (273) T Consensus 111 aP~~SG~~~iDh~Rs~dLv~~aL~ia~~vL~~~GnfvvKvFqGe~~d~y~~ 161 (192) T TIGR00438 111 APNISGIWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKVFQGEEIDEYLN 161 (192) T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCHHHHHH T ss_conf 888789875434437999999999999986158989999853742889999 |
1.1 from EC methylates the 23S rRNA. It specifically methylates the uridine in position 2552 of 23s rRNA in the 50S particle using S-adenosyl-L-methionine as a substrate. It was previously known as cell division protein ftsJ.; GO: 0016436 rRNA (uridine) methyltransferase activity, 0006364 rRNA processing. |
| >COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=98.56 E-value=9.9e-07 Score=58.58 Aligned_cols=97 Identities=23% Similarity=0.301 Sum_probs=72.3 Q ss_pred EEEECCCCCHHHHHHHHHCCC-CEEEEECCHHHHHHHHH-----------HCCCCCHHH--HCCCC-CCCCHHHHHHHHH Q ss_conf 999859985899999862697-08997200113577531-----------100120011--01433-3522266666742 Q gi|254780322|r 50 ALELHGITGIVGYTCMETKKI-HRMIRAEISTEFSTLKR-----------EVISCPLEE--IPSIS-QSVDLILSPLNLH 114 (273) Q Consensus 50 vLdlGcGtG~~~~~l~~~~~~-~~v~~~D~s~~~~~~~~-----------~~~~~d~e~--l~~~~-~sfDli~s~~~l~ 114 (273) T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 130 (257) T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEGAGLGLVDFVVADALGGVLPFEDSASFDLVISLLVLH 130 (257) T ss_pred EEEEECCCCHHH-HHHHHHCCCCEEEEECCCHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCCEEEEEEECCHHH T ss_conf 588603854689-9999735785799936888999999986300456635767604213556756666577898612344 Q ss_pred CCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCHH Q ss_conf 2234699999999981878708984068676334 Q gi|254780322|r 115 IINDTLEMFSKINHMLKPGGMFLAAIPGIGTLHE 148 (273) Q Consensus 115 w~~d~~~~l~~~~r~LkpgG~~~~s~~~~~~~~e 148 (273) T Consensus 131 ~~~-~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~ 163 (257) T COG0500 131 LLP-PAKALRELLRVLKPGGRLVLSDLLRDGLLE 163 (257) T ss_pred HHH-HHHHHHHHHHHCCCCCEEEEEECCCCCCCC T ss_conf 302-899999999870788689999624444321 |
|
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.56 E-value=2.1e-06 Score=56.72 Aligned_cols=105 Identities=12% Similarity=0.171 Sum_probs=76.0 Q ss_pred CCCCCCEEEECCCCCHHHHHHHHHCCCCEEEEECCHHHHHHHHHHC------------------CCCCHH-HHCCCCCCC Q ss_conf 6898709998599858999998626970899720011357753110------------------012001-101433352 Q gi|254780322|r 44 NQTFENALELHGITGIVGYTCMETKKIHRMIRAEISTEFSTLKREV------------------ISCPLE-EIPSISQSV 104 (273) Q Consensus 44 ~~~~~~vLdlGcGtG~~~~~l~~~~~~~~v~~~D~s~~~~~~~~~~------------------~~~d~e-~l~~~~~sf 104 (273) T Consensus 291 ~~~p~~VLiiGGGdG~a~revLk~~~ve~v~lVelD~~vv~lar~~~~l~~~n~~a~~DpRv~v~~~Da~~~l~~~~~~y 370 (516) T PRK03612 291 SPRARRVLILGGGDGLALREVLKYPDVEQVTLVDLDPAVTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLPETF 370 (516) T ss_pred CCCCCEEEEECCCCCHHHHHHHCCCCCCEEEEEECCHHHHHHHHHCCCHHHHHCCCCCCCCEEEEEHHHHHHHHHCCCCC T ss_conf 99977389983776087999864899663789951889999998572144441232349964898537899998688878 Q ss_pred CHHHHHHHHHCCCCH-----HHHHHHHHHHHCCCCEEEEEECCCCCCHH Q ss_conf 226666674222346-----99999999981878708984068676334 Q gi|254780322|r 105 DLILSPLNLHIINDT-----LEMFSKINHMLKPGGMFLAAIPGIGTLHE 148 (273) Q Consensus 105 Dli~s~~~l~w~~d~-----~~~l~~~~r~LkpgG~~~~s~~~~~~~~e 148 (273) T Consensus 371 DvIi~D~pdP~~~~~~~LYs~eFY~~~~~~L~~~G~~v~qs~Sp~~~~~ 419 (516) T PRK03612 371 DAIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQSTSPYFAPK 419 (516) T ss_pred CEEEEECCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCCCCH T ss_conf 8899818997995224675399999999844999589993689755220 |
|
| >TIGR00091 TIGR00091 tRNA (guanine-N(7)-)-methyltransferase; InterPro: IPR004395 This predicted S-adenosylmethionine-dependent methyltransferase is found in a single copy in most Bacteria | Back alignment and domain information |
|---|
Probab=98.53 E-value=1.5e-07 Score=63.44 Aligned_cols=95 Identities=14% Similarity=0.057 Sum_probs=72.4 Q ss_pred CCCCEEEECCCCCHHHHHHHHHCCCCEEEEECC--------HHHHHHHHH-------------HCCCCCHHHHCCCCCCC Q ss_conf 987099985998589999986269708997200--------113577531-------------10012001101433352 Q gi|254780322|r 46 TFENALELHGITGIVGYTCMETKKIHRMIRAEI--------STEFSTLKR-------------EVISCPLEEIPSISQSV 104 (273) Q Consensus 46 ~~~~vLdlGcGtG~~~~~l~~~~~~~~v~~~D~--------s~~~~~~~~-------------~~~~~d~e~l~~~~~sf 104 (273) T Consensus 19 ~~p~~~EIGcG~G~fl~~~A~~nP~~~flGIE~RvqvtnYv~~p~v~~a~~~~~~~g~~~~Nl~~L~~DA~~l~~--~~~ 96 (216) T TIGR00091 19 QKPLVLEIGCGKGRFLIKMAKQNPDKNFLGIEIRVQVTNYVETPIVLKAINKANKLGLKLRNLHVLCGDANELLE--KFF 96 (216) T ss_pred CCCEEEEECCCCCCCHHHHHHHCCCCCEEEEEEEEEEEEEECCCHHHHHHHHHHHHCCCHHHHHHHHCCHHHHHH--HHH T ss_conf 454489841687602689977279972777899988741022728998875576617844213522136023204--540 Q ss_pred CHH--HHHHHHHCCCCH-------------HHHHHHHHHHHCCCCEEEEEECC Q ss_conf 226--666674222346-------------99999999981878708984068 Q gi|254780322|r 105 DLI--LSPLNLHIINDT-------------LEMFSKINHMLKPGGMFLAAIPG 142 (273) Q Consensus 105 Dli--~s~~~l~w~~d~-------------~~~l~~~~r~LkpgG~~~~s~~~ 142 (273) T Consensus 97 ~~~PP~l~k~f~~FPDPW~KkRH~KRR~~~~~Fl~~~~~~L~~~G~i~~~TD~ 149 (216) T TIGR00091 97 PDGPPSLSKVFLNFPDPWPKKRHNKRRITQPHFLKEVANVLKKGGVIELKTDN 149 (216) T ss_pred CCCCCCEEEEEEECCCCCHHHHHCCCCCCCHHHHHHHHHHCCCCCEEEEECCC T ss_conf 07898045688877889510210223425678999999970459689997078 |
It is also found, with a short amino-terminal extension in eukaryotes. Its function is unknown. In Escherichia coli, this protein flanks the DNA repair protein MutY, also called micA.; GO: 0008168 methyltransferase activity. |
| >COG4122 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.52 E-value=5.9e-07 Score=59.89 Aligned_cols=103 Identities=18% Similarity=0.189 Sum_probs=77.9 Q ss_pred HHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHCC-CCEEEEECCHHHHHHHHHHC------------CC-CCH-HHHC-C Q ss_conf 9978986368987099985998589999986269-70899720011357753110------------01-200-1101-4 Q gi|254780322|r 36 IAFRLNMINQTFENALELHGITGIVGYTCMETKK-IHRMIRAEISTEFSTLKREV------------IS-CPL-EEIP-S 99 (273) Q Consensus 36 l~~~l~~~~~~~~~vLdlGcGtG~~~~~l~~~~~-~~~v~~~D~s~~~~~~~~~~------------~~-~d~-e~l~-~ 99 (273) T Consensus 50 ~L~~L~~~~-~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l~~~ 128 (219) T COG4122 50 LLRLLARLS-GPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDVLSRL 128 (219) T ss_pred HHHHHHHHC-CCCEEEEEECCCCHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHC T ss_conf 999999734-9864999635237999999963888976999707989999999999975976528988357479999733 Q ss_pred CCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHCCCCEEEEEECC Q ss_conf 3335222666667422234699999999981878708984068 Q gi|254780322|r 100 ISQSVDLILSPLNLHIINDTLEMFSKINHMLKPGGMFLAAIPG 142 (273) Q Consensus 100 ~~~sfDli~s~~~l~w~~d~~~~l~~~~r~LkpgG~~~~s~~~ 142 (273) T Consensus 129 ~~~~fDliFIDad---K~~yp~~le~~~~lLr~GGliv~DNvl 168 (219) T COG4122 129 LDGSFDLVFIDAD---KADYPEYLERALPLLRPGGLIVADNVL 168 (219) T ss_pred CCCCCCEEEEECC---HHHCHHHHHHHHHHHCCCCEEEEEECC T ss_conf 4788568998378---435999999999973789689983035 |
|
| >KOG2904 consensus | Back alignment and domain information |
|---|
Probab=98.52 E-value=1.6e-06 Score=57.36 Aligned_cols=105 Identities=18% Similarity=0.240 Sum_probs=71.1 Q ss_pred CCCEEEECCCCCHHHHHHHHHCCCCEEEEECCHHHHHHHHHHC------------C----CCCH-HHHCCCCCCCCHHHH Q ss_conf 8709998599858999998626970899720011357753110------------0----1200-110143335222666 Q gi|254780322|r 47 FENALELHGITGIVGYTCMETKKIHRMIRAEISTEFSTLKREV------------I----SCPL-EEIPSISQSVDLILS 109 (273) Q Consensus 47 ~~~vLdlGcGtG~~~~~l~~~~~~~~v~~~D~s~~~~~~~~~~------------~----~~d~-e~l~~~~~sfDli~s 109 (273) T Consensus 149 ~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~me~d~~~~~~l~~~~~dllvs 228 (328) T KOG2904 149 HTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIHNIMESDASDEHPLLEGKIDLLVS 228 (328) T ss_pred CCEEEEECCCCCHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCEEEEEC T ss_conf 66688705783188999983478734899853288999999889987415846898412220125655454575248853 Q ss_pred HHHHHCCCCH--------------------------HHHHHHHHHHHCCCCEEEEEECCCCCCHHHHH Q ss_conf 6674222346--------------------------99999999981878708984068676334778 Q gi|254780322|r 110 PLNLHIINDT--------------------------LEMFSKINHMLKPGGMFLAAIPGIGTLHELRK 151 (273) Q Consensus 110 ~~~l~w~~d~--------------------------~~~l~~~~r~LkpgG~~~~s~~~~~~~~el~~ 151 (273) T Consensus 229 NPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~le~~~~~~~~~lv~ 296 (328) T KOG2904 229 NPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQLELVERKEHSYLVR 296 (328) T ss_pred CCCCCCCCCHHHCCCHHEECCCHHHHCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHH T ss_conf 89965555122327133023744543066632699999987667545668858897335566819999 |
|
| >COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.51 E-value=1.1e-06 Score=58.34 Aligned_cols=94 Identities=17% Similarity=0.191 Sum_probs=74.4 Q ss_pred CCCCCEEEECCCCCHHHHHHHHHCCCCEEEEECCHHHHHHHHHHCC---------------CCCHH-HHCCCCCCCCHHH Q ss_conf 8987099985998589999986269708997200113577531100---------------12001-1014333522266 Q gi|254780322|r 45 QTFENALELHGITGIVGYTCMETKKIHRMIRAEISTEFSTLKREVI---------------SCPLE-EIPSISQSVDLIL 108 (273) Q Consensus 45 ~~~~~vLdlGcGtG~~~~~l~~~~~~~~v~~~D~s~~~~~~~~~~~---------------~~d~e-~l~~~~~sfDli~ 108 (273) T Consensus 75 ~~pk~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~fDvIi 154 (282) T COG0421 75 PNPKRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEKFDVII 154 (282) T ss_pred CCCCEEEEECCCCCHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHCCCCCCCCCCCCEEEEECCHHHHHHHCCCCCCEEE T ss_conf 99776999889766999999836884337999708899999998666754335797368996107999874887677899 Q ss_pred HHHHHHCCCCH------HHHHHHHHHHHCCCCEEEEEE Q ss_conf 66674222346------999999999818787089840 Q gi|254780322|r 109 SPLNLHIINDT------LEMFSKINHMLKPGGMFLAAI 140 (273) Q Consensus 109 s~~~l~w~~d~------~~~l~~~~r~LkpgG~~~~s~ 140 (273) T Consensus 155 ~D~tdp-~-gp~~~Lft~eFy~~~~~~L~~~Gi~v~q~ 190 (282) T COG0421 155 VDSTDP-V-GPAEALFTEEFYEGCRRALKEDGIFVAQA 190 (282) T ss_pred ECCCCC-C-CCCCCCCCHHHHHHHHHHCCCCCEEEEEC T ss_conf 858899-8-84302377999999998628896899944 |
|
| >COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.51 E-value=9.3e-07 Score=58.76 Aligned_cols=118 Identities=16% Similarity=0.141 Sum_probs=86.5 Q ss_pred HHHHHHHCCCCCCCEEEECCCCCHHHHHHHHH-CCCCEEEEECCHHHHHHHHHHCCCCCHHHHC--------CCCCCCCH Q ss_conf 99789863689870999859985899999862-6970899720011357753110012001101--------43335222 Q gi|254780322|r 36 IAFRLNMINQTFENALELHGITGIVGYTCMET-KKIHRMIRAEISTEFSTLKREVISCPLEEIP--------SISQSVDL 106 (273) Q Consensus 36 l~~~l~~~~~~~~~vLdlGcGtG~~~~~l~~~-~~~~~v~~~D~s~~~~~~~~~~~~~d~e~l~--------~~~~sfDl 106 (273) T Consensus 36 l~~k~~i~-~~~~~ViDLGAAPGgWsQva~~~~~~~~~vvavDi~p~~~~~~V~~iq~d~~~~~~~~~l~~~l~~~~~Dv 114 (205) T COG0293 36 LNEKFKLF-KPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMKPIPGVIFLQGDITDEDTLEKLLEALGGAPVDV 114 (205) T ss_pred HHHHCCCC-CCCCEEEECCCCCCCHHHHHHHHHCCCCCEEEEECCCCCCCCCCEEEEEECCCCCHHHHHHHHCCCCCCCE T ss_conf 98743730-58987998387998499999997388884899977545567894688413248437999998707787666 Q ss_pred HHHHHHH----HCCCCHH-------HHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHH Q ss_conf 6666674----2223469-------9999999981878708984068676334778899 Q gi|254780322|r 107 ILSPLNL----HIINDTL-------EMFSKINHMLKPGGMFLAAIPGIGTLHELRKALL 154 (273) Q Consensus 107 i~s~~~l----~w~~d~~-------~~l~~~~r~LkpgG~~~~s~~~~~~~~el~~~~~ 154 (273) T Consensus 115 V~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~fqg~~~~~~l~~~~ 173 (205) T COG0293 115 VLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKVFQGEDFEDLLKALR 173 (205) T ss_pred EEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHEECCCCEEEEEEEECCCHHHHHHHHH T ss_conf 87258877678722008899999999999998725789839999975798799999999 |
|
| >PRK00811 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.50 E-value=6.7e-07 Score=59.56 Aligned_cols=93 Identities=18% Similarity=0.260 Sum_probs=71.4 Q ss_pred CCCCCEEEECCCCCHHHHHHHHHCCCCEEEEECCHHHHHHHHHHCC----------------CCCHH-HHCCCCCCCCHH Q ss_conf 8987099985998589999986269708997200113577531100----------------12001-101433352226 Q gi|254780322|r 45 QTFENALELHGITGIVGYTCMETKKIHRMIRAEISTEFSTLKREVI----------------SCPLE-EIPSISQSVDLI 107 (273) Q Consensus 45 ~~~~~vLdlGcGtG~~~~~l~~~~~~~~v~~~D~s~~~~~~~~~~~----------------~~d~e-~l~~~~~sfDli 107 (273) T Consensus 77 ~~pk~VLIiGGGDGg~~rE~lkh~~v~~v~~VeiD~~Vi~~~~~~lp~~~~~~~~dprv~~~~~Dg~~fv~~~~~~yDvI 156 (283) T PRK00811 77 PNPKKVLIIGGGDGGTLREVLKHPSVEKITMVEIDERVVEMSRKYLPEISGGAWDDPRVELVIGDGVKFVRETENSFDVI 156 (283) T ss_pred CCCCEEEEECCCCHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHCCCCCEEEEHHHHHHHHHHCCCCCCEE T ss_conf 99774899568747999998427885679999468999999999838863133029715998278999998452355489 Q ss_pred HHHHHHHCCCCH---------HHHHHHHHHHHCCCCEEEEEECC Q ss_conf 666674222346---------99999999981878708984068 Q gi|254780322|r 108 LSPLNLHIINDT---------LEMFSKINHMLKPGGMFLAAIPG 142 (273) Q Consensus 108 ~s~~~l~w~~d~---------~~~l~~~~r~LkpgG~~~~s~~~ 142 (273) T Consensus 157 I~D~t-----DP~gpa~~Lft~~Fy~~~~~~L~~~Gi~v~Q~~s 195 (283) T PRK00811 157 IVDST-----DPVGPAEGLFTKEFYENCKRALKEGGIFVAQSES 195 (283) T ss_pred EEECC-----CCCCHHHHHCCHHHHHHHHHHCCCCCEEEECCCC T ss_conf 98089-----9886445534599999999853999589992798 |
|
| >smart00138 MeTrc Methyltransferase, chemotaxis proteins | Back alignment and domain information |
|---|
Probab=98.47 E-value=1.1e-06 Score=58.39 Aligned_cols=99 Identities=18% Similarity=0.185 Sum_probs=69.5 Q ss_pred CCCEEEECCCCCHHHHHH----HHHC-----CCCEEEEECCHHHHHHHHHH----------------------------- Q ss_conf 870999859985899999----8626-----97089972001135775311----------------------------- Q gi|254780322|r 47 FENALELHGITGIVGYTC----METK-----KIHRMIRAEISTEFSTLKRE----------------------------- 88 (273) Q Consensus 47 ~~~vLdlGcGtG~~~~~l----~~~~-----~~~~v~~~D~s~~~~~~~~~----------------------------- 88 (273) T Consensus 100 ~lrIWsagCStGEE~YSlAm~l~e~~~~~~~~~~~I~aTDIs~~~L~~Ar~G~Y~~~~~~~~~~~~~~kyF~~~~~~~~v 179 (264) T smart00138 100 RVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYRV 179 (264) T ss_pred CEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEECCHHHHHHHHHCCCCHHHHHCCCHHHHHHHCCCCCCEEEE T ss_conf 74899777888820899999999974334898569999839999999998689898998469999999880656988999 Q ss_pred ---------CCCCCHHHHCCCCCCCCHHHHHHHHHCCCCH--HHHHHHHHHHHCCCCEEEEEECCCCCCH Q ss_conf ---------0012001101433352226666674222346--9999999998187870898406867633 Q gi|254780322|r 89 ---------VISCPLEEIPSISQSVDLILSPLNLHIINDT--LEMFSKINHMLKPGGMFLAAIPGIGTLH 147 (273) Q Consensus 89 ---------~~~~d~e~l~~~~~sfDli~s~~~l~w~~d~--~~~l~~~~r~LkpgG~~~~s~~~~~~~~ 147 (273) T Consensus 180 ~~~lr~~v~F~~~NL~~~~~~~~~fDlI~CRNVlIYF~~~~~~~vl~~l~~~L~pgG~L~lG--~sEsl~ 247 (264) T smart00138 180 KPELKERVRFAKHNLLAESPPLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKPGGYLFLG--HSESLP 247 (264) T ss_pred CHHHHCCCCEECCCCCCCCCCCCCCEEEEECCCEEECCHHHHHHHHHHHHHHHCCCCEEEEE--CCCCCC T ss_conf 88998509183278999987778841999763235459999999999999983899399982--766688 |
Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues. |
| >TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit; InterPro: IPR014008 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt | Back alignment and domain information |
|---|
Probab=98.42 E-value=1e-06 Score=58.47 Aligned_cols=93 Identities=14% Similarity=0.068 Sum_probs=68.4 Q ss_pred CCC-CEEEECCCCCHHHHHHHHHCCC-CEEEEECCHHHHHH---HHHH-C-CC-------CCHH------HHCCC---CC Q ss_conf 987-0999859985899999862697-08997200113577---5311-0-01-------2001------10143---33 Q gi|254780322|r 46 TFE-NALELHGITGIVGYTCMETKKI-HRMIRAEISTEFST---LKRE-V-IS-------CPLE------EIPSI---SQ 102 (273) Q Consensus 46 ~~~-~vLdlGcGtG~~~~~l~~~~~~-~~v~~~D~s~~~~~---~~~~-~-~~-------~d~e------~l~~~---~~ 102 (273) T Consensus 19 ~~~~v~wDIGaGtGS~~iE~~~~~p~~g~v~aiEr~~~~~~~~~~N~~~~c~~~~~~i~~g~ap~~~~~~~~~~~~~~~~ 98 (135) T TIGR02469 19 PGDSVLWDIGAGTGSVTIEAARLVPNSGRVYAIERNPEALRLIERNLRRFCGVSNIVIVEGDAPEELLNSDAPEDSAKLP 98 (135) T ss_pred CCCCEEEEECCCCCHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCHHHCCCC T ss_conf 99946889605748389999973598607999853768987999999982899963256355684333677771005887 Q ss_pred CCCHHHHHHHHHCCCCHHHHHHHHHHHHCCCCEEEEEEC Q ss_conf 522266666742223469999999998187870898406 Q gi|254780322|r 103 SVDLILSPLNLHIINDTLEMFSKINHMLKPGGMFLAAIP 141 (273) Q Consensus 103 sfDli~s~~~l~w~~d~~~~l~~~~r~LkpgG~~~~s~~ 141 (273) T Consensus 99 ~~Da~fvGGs~~~~---~~il~~~~~~l~~GGr~v~na~ 134 (135) T TIGR02469 99 EPDAVFVGGSGGKL---EEILEAVERRLRPGGRIVLNAI 134 (135) T ss_pred CCCEEEECCCCHHH---HHHHHHHHHCCCCCCEEEEEEC T ss_conf 46888883897178---9999999850596888888513 |
Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase . In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase . There are at least two distinct cobalamin biosynthetic pathways in bacteria : Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway ; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis ; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) . There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CbiT subunit of precorrin-6Y C5,15-methyltransferase (2.1.1.132 from EC) from the anaerobic pathway, a bifunctional enzyme that catalyses two methylations (at C-5 and C-15) in precorrin-6Y, as well as the decarboxylation of the acetate side chain located in ring C, in order to generate precorrin-8X. In the anaerobic pathway, two enzymes are required to produce precorrin-8X: CbiE and CbiT, which can be fused as CbiET (sometimes called CobL) . In the aerobic pathway, the bifunctional enzyme is CobL .; GO: 0008276 protein methyltransferase activity, 0009236 cobalamin biosynthetic process. |
| >KOG1499 consensus | Back alignment and domain information |
|---|
Probab=98.41 E-value=3.6e-07 Score=61.13 Aligned_cols=89 Identities=21% Similarity=0.243 Sum_probs=66.2 Q ss_pred CCCEEEECCCCCHHHHHHHHHCCCCEEEEECCHHHHHHHHH------------HCCCCCHHHHCCCCCCCCHHHHHHHHH Q ss_conf 87099985998589999986269708997200113577531------------100120011014333522266666742 Q gi|254780322|r 47 FENALELHGITGIVGYTCMETKKIHRMIRAEISTEFSTLKR------------EVISCPLEEIPSISQSVDLILSPLNLH 114 (273) Q Consensus 47 ~~~vLdlGcGtG~~~~~l~~~~~~~~v~~~D~s~~~~~~~~------------~~~~~d~e~l~~~~~sfDli~s~~~l~ 114 (273) T Consensus 61 dK~VlDVGcGtGILS~F~akAG-A~~V~aVe~S~ia-~~a~~iv~~N~~~~ii~vi~gkvEdi~LP~eKVDiIvSEWMGy 138 (346) T KOG1499 61 DKTVLDVGCGTGILSMFAAKAG-ARKVYAVEASSIA-DFARKIVKDNGLEDVITVIKGKVEDIELPVEKVDIIVSEWMGY 138 (346) T ss_pred CCEEEECCCCCCHHHHHHHHHC-CCEEEEEECHHHH-HHHHHHHHHCCCCCEEEEEECCEEEEECCCCCEEEEEEHHHHH T ss_conf 9789975788128899988737-5339999626899-9999999856866059995030578764755402996301247 Q ss_pred CC---CCHHHHHHHHHHHHCCCCEEE Q ss_conf 22---346999999999818787089 Q gi|254780322|r 115 II---NDTLEMFSKINHMLKPGGMFL 137 (273) Q Consensus 115 w~---~d~~~~l~~~~r~LkpgG~~~ 137 (273) T Consensus 139 ~Ll~EsMldsVl~ARdkwL~~~G~i~ 164 (346) T KOG1499 139 FLLYESMLDSVLYARDKWLKEGGLIY 164 (346) T ss_pred HHHHHHHHHHHHHHHHHCCCCCCEEC T ss_conf 87776566645533330047795576 |
|
| >TIGR00080 pimt protein-L-isoaspartate O-methyltransferase; InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase ( |
|---|
Probab=98.40 E-value=1.1e-06 Score=58.23 Aligned_cols=104 Identities=15% Similarity=0.110 Sum_probs=76.0 Q ss_pred HHHHHHHHHH-HCCCCCCCEEEECCCCCHHHHHHHHH-CCCCEEEEECCHHHHHHHHHHCC----------------CCC Q ss_conf 9999997898-63689870999859985899999862-69708997200113577531100----------------120 Q gi|254780322|r 32 VAKEIAFRLN-MINQTFENALELHGITGIVGYTCMET-KKIHRMIRAEISTEFSTLKREVI----------------SCP 93 (273) Q Consensus 32 ~a~~l~~~l~-~~~~~~~~vLdlGcGtG~~~~~l~~~-~~~~~v~~~D~s~~~~~~~~~~~----------------~~d 93 (273) T Consensus 68 mvA~m~~yL~nhL-~~~~~vLeiG~GSGY~aavlA~~v~~~G~V~SiEri~~L~~~A~~~Lk~hhseqL~~~NV~v~~GD 146 (228) T TIGR00080 68 MVAKMTEYLENHL-KPGAKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELVEKARRRLKKHHSEQLGLDNVIVIEGD 146 (228) T ss_pred HHHHHHHHHHHHC-CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEEECHHHHHHHHHHHHHHHHHHHCCCCEEEEECC T ss_conf 9999999888521-403556650478558999999987139718998535788999998765431444068865899778 Q ss_pred HHHHCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHCCCCEEEEEECCCC Q ss_conf 011014333522266666742223469999999998187870898406867 Q gi|254780322|r 94 LEEIPSISQSVDLILSPLNLHIINDTLEMFSKINHMLKPGGMFLAAIPGIG 144 (273) Q Consensus 94 ~e~l~~~~~sfDli~s~~~l~w~~d~~~~l~~~~r~LkpgG~~~~s~~~~~ 144 (273) T Consensus 147 G~~G~~~~APYd~I~~~AA~k~iP------~AL~~QL~eGG~L~--~Pv~~ 189 (228) T TIGR00080 147 GRQGWEEKAPYDAILVTAAAKEIP------KALIDQLEEGGILV--LPVGE 189 (228) T ss_pred CCCCHHHCCCCCEEEEECCCCCCC------HHHHHHHHHCCEEE--ECCEE T ss_conf 865710248835277523789876------57899997289886--20000 |
1.1.77" />) (PCMT) (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyzes the transfer of a methyl group from S- adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerization of normal L-aspartyl and L- asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process. |
| >pfam01564 Spermine_synth Spermine/spermidine synthase | Back alignment and domain information |
|---|
Probab=98.40 E-value=2.2e-06 Score=56.61 Aligned_cols=97 Identities=12% Similarity=0.133 Sum_probs=70.9 Q ss_pred CCCCCEEEECCCCCHHHHHHHHHCCCCEEEEECCHHHHHHHHHHCC---------------CCCHH-HHCCCCCCCCHHH Q ss_conf 8987099985998589999986269708997200113577531100---------------12001-1014333522266 Q gi|254780322|r 45 QTFENALELHGITGIVGYTCMETKKIHRMIRAEISTEFSTLKREVI---------------SCPLE-EIPSISQSVDLIL 108 (273) Q Consensus 45 ~~~~~vLdlGcGtG~~~~~l~~~~~~~~v~~~D~s~~~~~~~~~~~---------------~~d~e-~l~~~~~sfDli~ 108 (273) T Consensus 74 ~~pk~VLIiGGGDG~~~rEvlk~~~v~~v~~VEiD~~Vv~~~~~~lp~~~~~~~dprv~l~~~Dg~~~l~~~~~~yDvII 153 (240) T pfam01564 74 PNPKKVLIIGGGDGGALREVVKHPSVEKITLVEIDEKVIEFSKKFLPSLAGGFDDPRVKVVIGDGFKFLKDYLVKFDVII 153 (240) T ss_pred CCCCEEEEECCCCHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHCCCCCCEEE T ss_conf 88553676458657999998567995389997578899999999879852434798559998168999985725445899 Q ss_pred HHHHHHCCC----CHHHHHHHHHHHHCCCCEEEEEEC Q ss_conf 666742223----469999999998187870898406 Q gi|254780322|r 109 SPLNLHIIN----DTLEMFSKINHMLKPGGMFLAAIP 141 (273) Q Consensus 109 s~~~l~w~~----d~~~~l~~~~r~LkpgG~~~~s~~ 141 (273) T Consensus 154 ~D~~DP~~~~~~Lfs~eFy~~~~~~L~~~Gi~v~Q~~ 190 (240) T pfam01564 154 VDSTDPVGPAENLFSKEFYDLLKRALKEDGVFVTQAE 190 (240) T ss_pred EECCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECC T ss_conf 9589976533444229999999986599978999248 |
Spermine and spermidine are polyamines. This family includes spermidine synthase that catalyses the fifth (last) step in the biosynthesis of spermidine from arginine, and spermine synthase. |
| >COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.38 E-value=2.2e-06 Score=56.54 Aligned_cols=108 Identities=17% Similarity=0.187 Sum_probs=72.7 Q ss_pred HHHHHHHHHHHHCCC-CCCCEEEECCCCCHHHH----HHHHHCC-----CCEEEEECCHHHHHHHHHH------------ Q ss_conf 999999978986368-98709998599858999----9986269-----7089972001135775311------------ Q gi|254780322|r 31 RVAKEIAFRLNMINQ-TFENALELHGITGIVGY----TCMETKK-----IHRMIRAEISTEFSTLKRE------------ 88 (273) Q Consensus 31 ~~a~~l~~~l~~~~~-~~~~vLdlGcGtG~~~~----~l~~~~~-----~~~v~~~D~s~~~~~~~~~------------ 88 (273) T Consensus 80 ~l~~~v~p~l~~~~~~~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~ 159 (268) T COG1352 80 ELRDEVLPELVKRKKGRPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGL 159 (268) T ss_pred HHHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEEECCHHHHHHHHCCCCCHHHHHCCC T ss_conf 99999879987304698539996676899558999999998733225874389999799999999862888766765449 Q ss_pred --------CC--------------------CCCHHHHCCCCCCCCHHHHHHHHHCCCCH--HHHHHHHHHHHCCCCEEEE Q ss_conf --------00--------------------12001101433352226666674222346--9999999998187870898 Q gi|254780322|r 89 --------VI--------------------SCPLEEIPSISQSVDLILSPLNLHIINDT--LEMFSKINHMLKPGGMFLA 138 (273) Q Consensus 89 --------~~--------------------~~d~e~l~~~~~sfDli~s~~~l~w~~d~--~~~l~~~~r~LkpgG~~~~ 138 (273) T Consensus 160 ~~~~~~ryF~~~~~~~y~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~~gG~Lfl 239 (268) T COG1352 160 PPELLRRYFERGGDGSYRVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNVLIYFDEETQERILRRFADSLKPGGLLFL 239 (268) T ss_pred CHHHHHHHEEECCCCCEEECHHHHCCCEEEECCCCCCCCCCCCCCEEEECCEEEEECHHHHHHHHHHHHHHHCCCCEEEE T ss_conf 98999633764699847987687624377535788875435898889984148863789999999999997489978998 |
|
| >pfam02475 Met_10 Met-10+ like-protein | Back alignment and domain information |
|---|
Probab=98.36 E-value=1.7e-06 Score=57.24 Aligned_cols=94 Identities=16% Similarity=0.232 Sum_probs=72.7 Q ss_pred HHHHCCCCCCCEEEECCCCCHHHHHHHHHCCCCEEEEECCHHHHHHHHH------------HCCCCCHHHHCCCCCCCCH Q ss_conf 8986368987099985998589999986269708997200113577531------------1001200110143335222 Q gi|254780322|r 39 RLNMINQTFENALELHGITGIVGYTCMETKKIHRMIRAEISTEFSTLKR------------EVISCPLEEIPSISQSVDL 106 (273) Q Consensus 39 ~l~~~~~~~~~vLdlGcGtG~~~~~l~~~~~~~~v~~~D~s~~~~~~~~------------~~~~~d~e~l~~~~~sfDl 106 (273) T Consensus 93 ri~~~~~~ge~VlD~faGvG~f~l~~ak~~~~~~V~a~DlNp~a~~~l~~N~~lN~v~~~i~~~~gD~~~~~-~~~~~Dr 171 (199) T pfam02475 93 RIAKLVKEGEVVVDMFAGIGPFSIPIAKHSKAKRVYAVELNPEAVKYLKENIKLNKVEGVISPILGDVRDVI-LEGVADR 171 (199) T ss_pred HHHHHCCCCCEEEECCCCCCHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHHCCCCCEEEEECCHHHHC-CCCCCCE T ss_conf 999744899889981688657789986407864899982899999999999998099983699928787860-4674009 Q ss_pred HHHHHHHHCCCCHHHHHHHHHHHHCCCCEEE Q ss_conf 6666674222346999999999818787089 Q gi|254780322|r 107 ILSPLNLHIINDTLEMFSKINHMLKPGGMFL 137 (273) Q Consensus 107 i~s~~~l~w~~d~~~~l~~~~r~LkpgG~~~ 137 (273) T Consensus 172 vimnlP----~~a~~fL~~A~~~lk~gg~iH 198 (199) T pfam02475 172 VIMNLP----KSAHEFLDKALRAVKDGGVIH 198 (199) T ss_pred EEECCC----CCHHHHHHHHHHHHCCCCEEE T ss_conf 994897----316999999999855898983 |
The methionine-10 mutant allele of N. crassa codes for a protein of unknown function. However, homologous proteins have been found in yeast suggesting this protein may be involved in methionine biosynthesis, transport and/or utilisation. |
| >TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase | Back alignment and domain information |
|---|
Probab=98.36 E-value=1.1e-06 Score=58.40 Aligned_cols=98 Identities=16% Similarity=0.091 Sum_probs=79.1 Q ss_pred CCCCCEEEECCCCCHHHHHHHHHCCCCEEEEECCHHHHHHHHHHC------CCCCHHHHCCCCCCCCHHHHHHHHHCC-- Q ss_conf 898709998599858999998626970899720011357753110------012001101433352226666674222-- Q gi|254780322|r 45 QTFENALELHGITGIVGYTCMETKKIHRMIRAEISTEFSTLKREV------ISCPLEEIPSISQSVDLILSPLNLHII-- 116 (273) Q Consensus 45 ~~~~~vLdlGcGtG~~~~~l~~~~~~~~v~~~D~s~~~~~~~~~~------~~~d~e~l~~~~~sfDli~s~~~l~w~-- 116 (273) T Consensus 42 ~~ikSilE~GcNIGlNL~ALk~L~P~~~l~gIEIN~~A~~~lk~~~~~~~i~n~SIld-~~~~~~~DLv~t~GVLIHinP 120 (204) T TIGR03587 42 PKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYLPNINIIQGSLFD-PFKDNFFDLVLTKGVLIHINP 120 (204) T ss_pred CCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHCCCCEEEECCCCC-CCCCCCEEEEEEEEEEEEECH T ss_conf 8888268966884776999987487440499953999999998658972699653346-677874238998308999788 Q ss_pred CCHHHHHHHHHHHHCCCCEEEEEECCCCC Q ss_conf 34699999999981878708984068676 Q gi|254780322|r 117 NDTLEMFSKINHMLKPGGMFLAAIPGIGT 145 (273) Q Consensus 117 ~d~~~~l~~~~r~LkpgG~~~~s~~~~~~ 145 (273) T Consensus 121 ~~L~~vy~~l~~~s~k--yili~EYynp~ 147 (204) T TIGR03587 121 DNLPTAYRELYRCSNR--YILIAEYYNPS 147 (204) T ss_pred HHHHHHHHHHHHHHCC--EEEEEEECCCC T ss_conf 9999999999985205--59999942899 |
Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme |
| >PRK00536 speE spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.35 E-value=5.3e-06 Score=54.36 Aligned_cols=102 Identities=11% Similarity=0.116 Sum_probs=74.9 Q ss_pred HHHHHHHHHCCC-CCCCEEEECCCCCHHHHHHHHHCCCCEEEEECCHHHHHHHHHHCCCCC------------HHHHCCC Q ss_conf 999978986368-987099985998589999986269708997200113577531100120------------0110143 Q gi|254780322|r 34 KEIAFRLNMINQ-TFENALELHGITGIVGYTCMETKKIHRMIRAEISTEFSTLKREVISCP------------LEEIPSI 100 (273) Q Consensus 34 ~~l~~~l~~~~~-~~~~vLdlGcGtG~~~~~l~~~~~~~~v~~~D~s~~~~~~~~~~~~~d------------~e~l~~~ 100 (273) T Consensus 59 hEMl~Hvpl~~Hp~Pk~VLIIGGGDGG~~REvlKH~-~-~v~~VEID~~Vv~~sk~ylP~~~~~~~dpr~~~~~~~~~~~ 136 (262) T PRK00536 59 SELLAHMGGCTKKELKEVLIVDGFDLELAHQLFKYD-T-HVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLLDLD 136 (262) T ss_pred HHHHHCHHHHCCCCCCEEEEECCCCHHHHHHHHCCC-C-EEEEEEECHHHHHHHHHHCHHHHHHHCCCCEEHHHHHHHHC T ss_conf 888753023218997879998687559999987289-7-66999967899999999785656541399611399987615 Q ss_pred CCCCCHHHHHHHHHCCCCHHHHHHHHHHHHCCCCEEEEEECC Q ss_conf 335222666667422234699999999981878708984068 Q gi|254780322|r 101 SQSVDLILSPLNLHIINDTLEMFSKINHMLKPGGMFLAAIPG 142 (273) Q Consensus 101 ~~sfDli~s~~~l~w~~d~~~~l~~~~r~LkpgG~~~~s~~~ 142 (273) T Consensus 137 ~~~fDvIIvDs-----l~~~~~~~~l~~~L~~~Gi~v~Q~es 173 (262) T PRK00536 137 IKKYDLIICLQ-----EPDIHKIDGLKRMLKEDGVFISVAKH 173 (262) T ss_pred CCCCCEEEECC-----CCCCCHHHHHHHHHCCCCEEEECCCC T ss_conf 47668899889-----99805499999985899899983897 |
|
| >COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.32 E-value=2.4e-06 Score=56.31 Aligned_cols=107 Identities=22% Similarity=0.232 Sum_probs=78.7 Q ss_pred HHHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHCCCCEEEEECCHHHHHHHHHH-----------CCCC-CHHHHC Q ss_conf 9999999789863689870999859985899999862697089972001135775311-----------0012-001101 Q gi|254780322|r 31 RVAKEIAFRLNMINQTFENALELHGITGIVGYTCMETKKIHRMIRAEISTEFSTLKRE-----------VISC-PLEEIP 98 (273) Q Consensus 31 ~~a~~l~~~l~~~~~~~~~vLdlGcGtG~~~~~l~~~~~~~~v~~~D~s~~~~~~~~~-----------~~~~-d~e~l~ 98 (273) T Consensus 184 ~lAR~mVN-La~v~-~G~~vlDPFcGTGgiLiEag--l~G~~viG~Did~~mv~gak~Nl~~y~i~~~~~~~~~Da~~lp 259 (347) T COG1041 184 RLARAMVN-LARVK-RGELVLDPFCGTGGILIEAG--LMGARVIGSDIDERMVRGAKINLEYYGIEDYPVLKVLDATNLP 259 (347) T ss_pred HHHHHHHH-HHCCC-CCCEEECCCCCCCHHHHHHH--HCCCEEEECCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCC T ss_conf 99999877-74164-69876457678348888366--4275676032379998556641566276761688730221277 Q ss_pred CCCCCCCHHHHHHHHHCC--------CC-HHHHHHHHHHHHCCCCEEEEEEC Q ss_conf 433352226666674222--------34-69999999998187870898406 Q gi|254780322|r 99 SISQSVDLILSPLNLHII--------ND-TLEMFSKINHMLKPGGMFLAAIP 141 (273) Q Consensus 99 ~~~~sfDli~s~~~l~w~--------~d-~~~~l~~~~r~LkpgG~~~~s~~ 141 (273) T Consensus 260 l~~~~vdaIatDPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p 311 (347) T COG1041 260 LRDNSVDAIATDPPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAP 311 (347) T ss_pred CCCCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECC T ss_conf 8877423588469987100245552899999999999987304848999617 |
|
| >KOG3987 consensus | Back alignment and domain information |
|---|
Probab=98.25 E-value=8.6e-07 Score=58.94 Aligned_cols=100 Identities=19% Similarity=0.146 Sum_probs=79.0 Q ss_pred CCCCCEEEECCCCCHHHHHHHHHCCCCEEEEECCHHHHHHHHH---HCCCCCHHHHCCCCCCCCHHHHHHHHHCCCCHHH Q ss_conf 8987099985998589999986269708997200113577531---1001200110143335222666667422234699 Q gi|254780322|r 45 QTFENALELHGITGIVGYTCMETKKIHRMIRAEISTEFSTLKR---EVISCPLEEIPSISQSVDLILSPLNLHIINDTLE 121 (273) Q Consensus 45 ~~~~~vLdlGcGtG~~~~~l~~~~~~~~v~~~D~s~~~~~~~~---~~~~~d~e~l~~~~~sfDli~s~~~l~w~~d~~~ 121 (273) T Consensus 111 ~~~~~lLDlGAGdGeit~~m~p~f--eevyATElS~tMr~rL~kk~ynVl~~~ew~-~t~~k~dli~clNlLDRc~~p~k 187 (288) T KOG3987 111 QEPVTLLDLGAGDGEITLRMAPTF--EEVYATELSWTMRDRLKKKNYNVLTEIEWL-QTDVKLDLILCLNLLDRCFDPFK 187 (288) T ss_pred CCCEEEEECCCCCCCHHHHHCCHH--HHHHHHHHHHHHHHHHHHCCCCEEEEHHHH-HCCCEEEHHHHHHHHHHHCCHHH T ss_conf 987068861678861001214218--999998766999999865277366500333-13722315888778875067677 Q ss_pred HHHHHHHHHCC-CCEEEEEECCCCCCH Q ss_conf 99999998187-870898406867633 Q gi|254780322|r 122 MFSKINHMLKP-GGMFLAAIPGIGTLH 147 (273) Q Consensus 122 ~l~~~~r~Lkp-gG~~~~s~~~~~~~~ 147 (273) T Consensus 188 LL~Di~~vl~psngrvivaLVLP~~hY 214 (288) T KOG3987 188 LLEDIHLVLAPSNGRVIVALVLPYMHY 214 (288) T ss_pred HHHHHHHHHCCCCCCEEEEEEECCCCE T ss_conf 999999984647884899998424211 |
|
| >pfam08704 GCD14 tRNA methyltransferase complex GCD14 subunit | Back alignment and domain information |
|---|
Probab=98.19 E-value=9.5e-06 Score=52.86 Aligned_cols=92 Identities=15% Similarity=0.083 Sum_probs=66.7 Q ss_pred CCCCCEEEECCCCCHHHHHHHHH-CCCCEEEEECCHHHHHHHHHHCCC------------CCHHHHCCC---CCCCCHHH Q ss_conf 89870999859985899999862-697089972001135775311001------------200110143---33522266 Q gi|254780322|r 45 QTFENALELHGITGIVGYTCMET-KKIHRMIRAEISTEFSTLKREVIS------------CPLEEIPSI---SQSVDLIL 108 (273) Q Consensus 45 ~~~~~vLdlGcGtG~~~~~l~~~-~~~~~v~~~D~s~~~~~~~~~~~~------------~d~e~l~~~---~~sfDli~ 108 (273) T Consensus 101 ~PG~~VlEaGtGSGsLT~~Laravgp~G~v~t~E~~e~r~~~A~~n~~~~g~~~~v~~~~rDv~~~gf~~~~~~~~D~V- 179 (309) T pfam08704 101 KPGSVVCESGTGSGSLSHAIARTVAPTGHLYTFEFHEQRADKAREEFREHGLDSLVTVTHRDVCKSGFDTEVSNKADAV- 179 (309) T ss_pred CCCCEEEEECCCCCHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCCCCCCEEEEECCHHCCCCCCCCCCCCCEE- T ss_conf 9999999836784299999999748886599984478999999999987498750588985200136664456643589- Q ss_pred HHHHHHCCCCHHHHHHHHHHHHC-CCCEEEEEEC Q ss_conf 66674222346999999999818-7870898406 Q gi|254780322|r 109 SPLNLHIINDTLEMFSKINHMLK-PGGMFLAAIP 141 (273) Q Consensus 109 s~~~l~w~~d~~~~l~~~~r~Lk-pgG~~~~s~~ 141 (273) T Consensus 180 ----fLDlp~PW~ai~~~~~~Lk~~Gg~l~~f~P 209 (309) T pfam08704 180 ----FLDLPAPWEAIPHAAKALKVEGGRLCSFSP 209 (309) T ss_pred ----EECCCCHHHHHHHHHHHHCCCCCEEEEECC T ss_conf ----975899799889999860689968999919 |
GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA. |
| >PRK10611 chemotaxis methyltransferase CheR; Provisional | Back alignment and domain information |
|---|
Probab=98.17 E-value=6.8e-06 Score=53.71 Aligned_cols=99 Identities=19% Similarity=0.262 Sum_probs=69.0 Q ss_pred CCEEEECCCCCHHHHHH----HHH----CCCCEEEEECCHHHHHHHHHH-------------------CCC--------- Q ss_conf 70999859985899999----862----697089972001135775311-------------------001--------- Q gi|254780322|r 48 ENALELHGITGIVGYTC----MET----KKIHRMIRAEISTEFSTLKRE-------------------VIS--------- 91 (273) Q Consensus 48 ~~vLdlGcGtG~~~~~l----~~~----~~~~~v~~~D~s~~~~~~~~~-------------------~~~--------- 91 (273) T Consensus 117 lRIWSAgCSTGEEpYSiAm~l~E~~~~~~~~~~I~aTDIs~~~L~~Ar~GiY~~~~~~~~p~~~~~ryF~~~~~~~~g~~ 196 (287) T PRK10611 117 YRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRLEELKTLSPQQLQRYFMRGTGPHEGLV 196 (287) T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEECCHHHHHHHHCCCCCHHHHHCCCHHHHHHHEECCCCCCCCEE T ss_conf 58997677887239999999999732377770799997988899999808988899845999999511641578766618 Q ss_pred --------------CCHH--HHCCCCCCCCHHHHHHHHHCCCCH--HHHHHHHHHHHCCCCEEEEEECCCCCCHHH Q ss_conf --------------2001--101433352226666674222346--999999999818787089840686763347 Q gi|254780322|r 92 --------------CPLE--EIPSISQSVDLILSPLNLHIINDT--LEMFSKINHMLKPGGMFLAAIPGIGTLHEL 149 (273) Q Consensus 92 --------------~d~e--~l~~~~~sfDli~s~~~l~w~~d~--~~~l~~~~r~LkpgG~~~~s~~~~~~~~el 149 (273) T Consensus 197 ~v~~~lr~~V~F~~~NL~~~~~~~-~~~fDlIfCRNVlIYFd~~~q~~vl~~~~~~L~pgG~L~l--G~sEsl~~~ 269 (287) T PRK10611 197 RVRQELANYVDFQSLNLLAKQYTV-PGPFDAIFCRNVMIYFDKTTQQEILRRFVPLLKPDGLLFA--GHSENFSQL 269 (287) T ss_pred EECHHHHCCCEEEHHHCCCCCCCC-CCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCEEEE--ECCCCCCCC T ss_conf 745787630777140067998888-8995199978405367899999999999998689928998--388777887 |
|
| >KOG1661 consensus | Back alignment and domain information |
|---|
Probab=98.16 E-value=5.6e-06 Score=54.20 Aligned_cols=100 Identities=15% Similarity=0.072 Sum_probs=72.2 Q ss_pred HHHHHHHCCCCCCCEEEECCCCCHHHHHHHHH-CCCCE-EEEECCHHHHHHHHHH---------------------CCCC Q ss_conf 99789863689870999859985899999862-69708-9972001135775311---------------------0012 Q gi|254780322|r 36 IAFRLNMINQTFENALELHGITGIVGYTCMET-KKIHR-MIRAEISTEFSTLKRE---------------------VISC 92 (273) Q Consensus 36 l~~~l~~~~~~~~~vLdlGcGtG~~~~~l~~~-~~~~~-v~~~D~s~~~~~~~~~---------------------~~~~ 92 (273) T Consensus 72 ~le~L~~~L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvG 151 (237) T KOG1661 72 ALEYLDDHLQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVG 151 (237) T ss_pred HHHHHHHHHCCCCCEEECCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCEEEEEC T ss_conf 99999986234731013378740899999999457776651444159999999987776504730455641486479967 Q ss_pred CHHHHCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHCCCCEEEEEEC Q ss_conf 0011014333522266666742223469999999998187870898406 Q gi|254780322|r 93 PLEEIPSISQSVDLILSPLNLHIINDTLEMFSKINHMLKPGGMFLAAIP 141 (273) Q Consensus 93 d~e~l~~~~~sfDli~s~~~l~w~~d~~~~l~~~~r~LkpgG~~~~s~~ 141 (273) T Consensus 152 Dgr~g~~e~a~YDaIhvGAa------a~~~pq~l~dqL~~gGrllip~~ 194 (237) T KOG1661 152 DGRKGYAEQAPYDAIHVGAA------ASELPQELLDQLKPGGRLLIPVG 194 (237) T ss_pred CCCCCCCCCCCCCEEEECCC------CCCCHHHHHHHHCCCCEEEEEEC T ss_conf 76234775687665787667------62247999986343872898611 |
|
| >PRK01581 speE spermidine synthase; Validated | Back alignment and domain information |
|---|
Probab=98.08 E-value=5.7e-06 Score=54.16 Aligned_cols=94 Identities=18% Similarity=0.268 Sum_probs=72.1 Q ss_pred CCCCCEEEECCCCCHHHHHHHHHCCCCEEEEECCHHHHHHHHHH------------------CCCCCHH-HHCCCCCCCC Q ss_conf 89870999859985899999862697089972001135775311------------------0012001-1014333522 Q gi|254780322|r 45 QTFENALELHGITGIVGYTCMETKKIHRMIRAEISTEFSTLKRE------------------VISCPLE-EIPSISQSVD 105 (273) Q Consensus 45 ~~~~~vLdlGcGtG~~~~~l~~~~~~~~v~~~D~s~~~~~~~~~------------------~~~~d~e-~l~~~~~sfD 105 (273) T Consensus 138 ~~~~rVLILGGGDGLAlREVLKyp~Ve~VTLVDLDP~mt~Lar~~p~L~~LN~~AL~DPRV~Vvn~DAf~wL~~~~~~FD 217 (363) T PRK01581 138 IDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMIDMARNVPELVSLNKSAFFDNRVNTHVCDAKEFLSSPSSLYD 217 (363) T ss_pred CCCCEEEEEECCCHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHCHHHHHHHHHHCCCCCEEEEECCHHHHHHCCCCCCC T ss_conf 88773899807643999998717985627899569999998751979987512001498049992108999861675442 Q ss_pred HHHHHHHHHCCCCH----------HHHHHHHHHHHCCCCEEEEEECCC Q ss_conf 26666674222346----------999999999818787089840686 Q gi|254780322|r 106 LILSPLNLHIINDT----------LEMFSKINHMLKPGGMFLAAIPGI 143 (273) Q Consensus 106 li~s~~~l~w~~d~----------~~~l~~~~r~LkpgG~~~~s~~~~ 143 (273) T Consensus 218 vIIVDl-----PDP~n~~L~KLYS~eFY~Ll~~~La~dG~~vVQSTSP 260 (363) T PRK01581 218 VIIIDF-----PDPATELLSTLYTSELFARIATFLTEDGAFVCQSNSP 260 (363) T ss_pred EEEEEC-----CCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCC T ss_conf 899958-----9998624666735999999998619885399960797 |
|
| >KOG4589 consensus | Back alignment and domain information |
|---|
Probab=98.04 E-value=1.2e-05 Score=52.27 Aligned_cols=114 Identities=14% Similarity=0.187 Sum_probs=78.4 Q ss_pred HHHHCCCCCCCEEEECCCCCHHHHHHHHH-CCCCEEEEECCHHHHHHHHHHCCCC-CH----------HHHCCCCCCCCH Q ss_conf 89863689870999859985899999862-6970899720011357753110012-00----------110143335222 Q gi|254780322|r 39 RLNMINQTFENALELHGITGIVGYTCMET-KKIHRMIRAEISTEFSTLKREVISC-PL----------EEIPSISQSVDL 106 (273) Q Consensus 39 ~l~~~~~~~~~vLdlGcGtG~~~~~l~~~-~~~~~v~~~D~s~~~~~~~~~~~~~-d~----------e~l~~~~~sfDl 106 (273) T Consensus 63 Ky~~l-~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~~p~~Ga~~i~~~dvtdp~~~~ki~e~l--p~r~Vdv 139 (232) T KOG4589 63 KYRFL-RPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHIEPPEGATIIQGNDVTDPETYRKIFEAL--PNRPVDV 139 (232) T ss_pred HCCCC-CCCCEEEECCCCCCHHHHHHHHHHCCCCEEEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHC--CCCCCCE T ss_conf 11436-88877998167887189999886288742888743311488876401432468888999999867--9983218 Q ss_pred HHHHHHHHC----CCCHHH-------HHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHH Q ss_conf 666667422----234699-------9999999818787089840686763347788998 Q gi|254780322|r 107 ILSPLNLHI----INDTLE-------MFSKINHMLKPGGMFLAAIPGIGTLHELRKALLK 155 (273) Q Consensus 107 i~s~~~l~w----~~d~~~-------~l~~~~r~LkpgG~~~~s~~~~~~~~el~~~~~~ 155 (273) T Consensus 140 VlSDMapnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK~w~g~e~~~l~r~l~~ 199 (232) T KOG4589 140 VLSDMAPNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVCKLWDGSEEALLQRRLQA 199 (232) T ss_pred EEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCHHHHHHHHHH T ss_conf 871357787675124378999999999988632147785799997049732899999999 |
|
| >KOG1500 consensus | Back alignment and domain information |
|---|
Probab=98.01 E-value=2.4e-05 Score=50.54 Aligned_cols=100 Identities=23% Similarity=0.338 Sum_probs=67.6 Q ss_pred CCCEEEECCCCCHHHHHHHHHCCCCEEEEECCHHHHHHHHHH------------CCCCCHHHHCCCCCCCCHHHHHH-HH Q ss_conf 870999859985899999862697089972001135775311------------00120011014333522266666-74 Q gi|254780322|r 47 FENALELHGITGIVGYTCMETKKIHRMIRAEISTEFSTLKRE------------VISCPLEEIPSISQSVDLILSPL-NL 113 (273) Q Consensus 47 ~~~vLdlGcGtG~~~~~l~~~~~~~~v~~~D~s~~~~~~~~~------------~~~~d~e~l~~~~~sfDli~s~~-~l 113 (273) T Consensus 178 ~kiVlDVGaGSGILS~FAaqAGA-~~vYAvEAS~-MAqyA~~Lv~~N~~~~rItVI~GKiEdieLPE-k~DviISEPMG~ 254 (517) T KOG1500 178 DKIVLDVGAGSGILSFFAAQAGA-KKVYAVEASE-MAQYARKLVASNNLADRITVIPGKIEDIELPE-KVDVIISEPMGY 254 (517) T ss_pred CCEEEEECCCCCHHHHHHHHHCC-CEEEEEEHHH-HHHHHHHHHHCCCCCCEEEECCCCCCEECCCC-CCCEEEECCCHH T ss_conf 74899815882489999987386-5389874567-99999998743663203787056320103751-034787256214 Q ss_pred HCCCC-HHHHHHHHHHHHCCCCEEEEEECCCCCCHHHH Q ss_conf 22234-69999999998187870898406867633477 Q gi|254780322|r 114 HIIND-TLEMFSKINHMLKPGGMFLAAIPGIGTLHELR 150 (273) Q Consensus 114 ~w~~d-~~~~l~~~~r~LkpgG~~~~s~~~~~~~~el~ 150 (273) T Consensus 255 mL~NERMLEsYl~Ark~l~P~GkM-fPT~gdiHlAPFs 291 (517) T KOG1500 255 MLVNERMLESYLHARKWLKPNGKM-FPTVGDIHLAPFS 291 (517) T ss_pred HHHHHHHHHHHHHHHHHCCCCCCC-CCCCCCEEECCCC T ss_conf 111088899999998742877744-6752535434665 |
|
| >COG1092 Predicted SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.00016 Score=45.69 Aligned_cols=104 Identities=15% Similarity=0.150 Sum_probs=74.8 Q ss_pred CCCEEEECCCCCHHHHHHHHHCCCCEEEEECCHHHHHHHHHH-------------CCCCCHHH-H---CCCCCCCCHHHH Q ss_conf 870999859985899999862697089972001135775311-------------00120011-0---143335222666 Q gi|254780322|r 47 FENALELHGITGIVGYTCMETKKIHRMIRAEISTEFSTLKRE-------------VISCPLEE-I---PSISQSVDLILS 109 (273) Q Consensus 47 ~~~vLdlGcGtG~~~~~l~~~~~~~~v~~~D~s~~~~~~~~~-------------~~~~d~e~-l---~~~~~sfDli~s 109 (273) T Consensus 218 GkrvLNlFsYTGgfsv~Aa~gG-A~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~~g~~fDlIil 296 (393) T COG1092 218 GKRVLNLFSYTGGFSVHAALGG-ASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAERRGEKFDLIIL 296 (393) T ss_pred CCEEEEECCCCCHHHHHHHHCC-CCCEEEEECCHHHHHHHHHHHHHCCCCCCCEEEEHHHHHHHHHHHHHCCCCCCEEEE T ss_conf 8767886466769999998669-971489826578999999999862997101056722399999999855995568997 Q ss_pred H---------HHHHCCCCHHHHHHHHHHHHCCCCEEEEEE-CCCCCCHHHHH Q ss_conf 6---------674222346999999999818787089840-68676334778 Q gi|254780322|r 110 P---------LNLHIINDTLEMFSKINHMLKPGGMFLAAI-PGIGTLHELRK 151 (273) Q Consensus 110 ~---------~~l~w~~d~~~~l~~~~r~LkpgG~~~~s~-~~~~~~~el~~ 151 (273) T Consensus 297 DPPsF~r~k~~~~~~~rdy~~l~~~~~~lL~pgG~l~~~s~~~~~~~~~f~~ 348 (393) T COG1092 297 DPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCSRHFSSDLFLE 348 (393) T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHH T ss_conf 8810035821005389899999999999707996899993677669899999 |
|
| >COG3963 Phospholipid N-methyltransferase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=97.89 E-value=8.9e-05 Score=47.20 Aligned_cols=99 Identities=18% Similarity=0.158 Sum_probs=75.6 Q ss_pred CCCCEEEECCCCCHHHHHHHHH-CCCCEEEEECCHHHHHHH------HHHCCCCCHHHHC-----CCCCCCCHHHHHHHH Q ss_conf 9870999859985899999862-697089972001135775------3110012001101-----433352226666674 Q gi|254780322|r 46 TFENALELHGITGIVGYTCMET-KKIHRMIRAEISTEFSTL------KREVISCPLEEIP-----SISQSVDLILSPLNL 113 (273) Q Consensus 46 ~~~~vLdlGcGtG~~~~~l~~~-~~~~~v~~~D~s~~~~~~------~~~~~~~d~e~l~-----~~~~sfDli~s~~~l 113 (273) T Consensus 48 sglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p~~~ii~gda~~l~~~l~e~~gq~~D~viS~lPl 127 (194) T COG3963 48 SGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYPGVNIINGDAFDLRTTLGEHKGQFFDSVISGLPL 127 (194) T ss_pred CCCEEEEECCCCCHHHHHHHHCCCCCCCEEEEEECHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCEEEEEEECCCC T ss_conf 59764777698667689999657995436899827799999997588751305405657877865279740168865600 Q ss_pred HCCCCH--HHHHHHHHHHHCCCCEEEEEECCCC Q ss_conf 222346--9999999998187870898406867 Q gi|254780322|r 114 HIINDT--LEMFSKINHMLKPGGMFLAAIPGIG 144 (273) Q Consensus 114 ~w~~d~--~~~l~~~~r~LkpgG~~~~s~~~~~ 144 (273) T Consensus 128 l~~P~~~~iaile~~~~rl~~gg~lvqftYgp~ 160 (194) T COG3963 128 LNFPMHRRIAILESLLYRLPAGGPLVQFTYGPL 160 (194) T ss_pred CCCCHHHHHHHHHHHHHHCCCCCEEEEEEECCC T ss_conf 248677899999999985689972799984688 |
|
| >KOG2352 consensus | Back alignment and domain information |
|---|
Probab=97.84 E-value=4.4e-05 Score=48.99 Aligned_cols=105 Identities=10% Similarity=0.190 Sum_probs=78.1 Q ss_pred HHHHHHCCCCCC-CEEEECCCCCHHHHHHHHHCCCCEEEEECCHHHHHHH----H-H-----HCCCCCHHHHCCCCCCCC Q ss_conf 978986368987-0999859985899999862697089972001135775----3-1-----100120011014333522 Q gi|254780322|r 37 AFRLNMINQTFE-NALELHGITGIVGYTCMETKKIHRMIRAEISTEFSTL----K-R-----EVISCPLEEIPSISQSVD 105 (273) Q Consensus 37 ~~~l~~~~~~~~-~vLdlGcGtG~~~~~l~~~~~~~~v~~~D~s~~~~~~----~-~-----~~~~~d~e~l~~~~~sfD 105 (273) T Consensus 38 ~~~i~~~~~p~~~~~l~lGCGNS~l~e~ly~~G~-~dI~~iD~S~V~V~~m~~~~~~~~~~~~~~~~d~~~l~fedESFd 116 (482) T KOG2352 38 SGSIMKYLSPSDFKILQLGCGNSELSEHLYKNGF-EDITNIDSSSVVVAAMQVRNAKERPEMQMVEMDMDQLVFEDESFD 116 (482) T ss_pred HHHHHHHHCHHHCEEEEECCCCCHHHHHHHHCCC-CCCEECCCCHHHHHHHHHCCCCCCCCEEEEEECCHHCCCCCCCEE T ss_conf 8888875065451147615887799999986587-774220056899999875145677424889802110357875314 Q ss_pred HHHHHHHHHCC----------CCHHHHHHHHHHHHCCCCEEEEEECC Q ss_conf 26666674222----------34699999999981878708984068 Q gi|254780322|r 106 LILSPLNLHII----------NDTLEMFSKINHMLKPGGMFLAAIPG 142 (273) Q Consensus 106 li~s~~~l~w~----------~d~~~~l~~~~r~LkpgG~~~~s~~~ 142 (273) T Consensus 117 iVIdkGtlDal~~de~a~~~~~~v~~~~~eVsrvl~~~gk~~svtl~ 163 (482) T KOG2352 117 IVIDKGTLDALFEDEDALLNTAHVSNMLDEVSRVLAPGGKYISVTLV 163 (482) T ss_pred EEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEE T ss_conf 88732764001478500234677667776678874269878999861 |
|
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.00018 Score=45.44 Aligned_cols=92 Identities=17% Similarity=0.008 Sum_probs=70.0 Q ss_pred CCCCEEEECCCCCHHHHHHHHHCCCCEEEEECCHHHHHHHH-----------HHCCCCCHHHH--CCCCCCCCHHHHHHH Q ss_conf 98709998599858999998626970899720011357753-----------11001200110--143335222666667 Q gi|254780322|r 46 TFENALELHGITGIVGYTCMETKKIHRMIRAEISTEFSTLK-----------REVISCPLEEI--PSISQSVDLILSPLN 112 (273) Q Consensus 46 ~~~~vLdlGcGtG~~~~~l~~~~~~~~v~~~D~s~~~~~~~-----------~~~~~~d~e~l--~~~~~sfDli~s~~~ 112 (273) T Consensus 344 k~kv~LEIGFG~Ge~L~~~A~~nP~~~fIG~Evy~nGva~ll~~i~~~~l~Niri~~~D~~~ll~~lp~~sld~i~---- 419 (503) T PRK01544 344 KRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNITNFLLFPNNLDLILNDLPNNSLDGIY---- 419 (503) T ss_pred CCEEEEEECCCCCHHHHHHHHHCCCCCEEEEEECHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHCCCCCCCEEE---- T ss_conf 6708999536987999999996898888999406566999999999869975998733599999856620404167---- Q ss_pred HHCCCCH-------------HHHHHHHHHHHCCCCEEEEEECC Q ss_conf 4222346-------------99999999981878708984068 Q gi|254780322|r 113 LHIINDT-------------LEMFSKINHMLKPGGMFLAAIPG 142 (273) Q Consensus 113 l~w~~d~-------------~~~l~~~~r~LkpgG~~~~s~~~ 142 (273) T Consensus 420 -ilfPDPWpKkRH~KRRli~~efl~~l~~~Lk~~G~l~~aTD~ 461 (503) T PRK01544 420 -ILFPDPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFASDI 461 (503) T ss_pred -EECCCCCCCCCHHHHCCCCHHHHHHHHHHHCCCCEEEEECCC T ss_conf -878999975532200177999999999971469889997678 |
|
| >KOG0820 consensus | Back alignment and domain information |
|---|
Probab=97.73 E-value=5.5e-05 Score=48.43 Aligned_cols=71 Identities=17% Similarity=0.153 Sum_probs=56.6 Q ss_pred CCCCCEEEECCCCCHHHHHHHHHCCCCEEEEECCHHHHHHHHH------------HCCCCCHHHHCCCCCCCCHHHHHHH Q ss_conf 8987099985998589999986269708997200113577531------------1001200110143335222666667 Q gi|254780322|r 45 QTFENALELHGITGIVGYTCMETKKIHRMIRAEISTEFSTLKR------------EVISCPLEEIPSISQSVDLILSPLN 112 (273) Q Consensus 45 ~~~~~vLdlGcGtG~~~~~l~~~~~~~~v~~~D~s~~~~~~~~------------~~~~~d~e~l~~~~~sfDli~s~~~ 112 (273) T Consensus 57 k~tD~VLEvGPGTGnLT~~lLe~~--kkVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK~d~P--~fd~cVsNlP 132 (315) T KOG0820 57 KPTDVVLEVGPGTGNLTVKLLEAG--KKVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLKTDLP--RFDGCVSNLP 132 (315) T ss_pred CCCCEEEEECCCCCHHHHHHHHHC--CEEEEEECCCHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCC--CCCEEECCCC T ss_conf 998779995798778999999720--848999408078999999866998656046885031257885--1031122698 Q ss_pred HHCCCCH Q ss_conf 4222346 Q gi|254780322|r 113 LHIINDT 119 (273) Q Consensus 113 l~w~~d~ 119 (273) T Consensus 133 yqISSp~ 139 (315) T KOG0820 133 YQISSPL 139 (315) T ss_pred CCCCCHH T ss_conf 5336788 |
|
| >COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.67 E-value=7.8e-05 Score=47.53 Aligned_cols=84 Identities=20% Similarity=0.177 Sum_probs=56.7 Q ss_pred HHHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHCCCCEEEEECCHHHHHHHHH---------HCCCCCHHHHCCCC Q ss_conf 999999978986368987099985998589999986269708997200113577531---------10012001101433 Q gi|254780322|r 31 RVAKEIAFRLNMINQTFENALELHGITGIVGYTCMETKKIHRMIRAEISTEFSTLKR---------EVISCPLEEIPSIS 101 (273) Q Consensus 31 ~~a~~l~~~l~~~~~~~~~vLdlGcGtG~~~~~l~~~~~~~~v~~~D~s~~~~~~~~---------~~~~~d~e~l~~~~ 101 (273) T Consensus 17 ~v~~kIv~~a~-~~-~~d~VlEIGpG~GaLT~~Ll~~~~--~v~aiEiD~~l~~~L~~~~~~~~n~~vi~~DaLk~d~~~ 92 (259) T COG0030 17 NVIDKIVEAAN-IS-PGDNVLEIGPGLGALTEPLLERAA--RVTAIEIDRRLAEVLKERFAPYDNLTVINGDALKFDFPS 92 (259) T ss_pred HHHHHHHHHCC-CC-CCCEEEEECCCCCHHHHHHHHHCC--EEEEEEECHHHHHHHHHHHCCCCCEEEEECCHHCCCCHH T ss_conf 79999998557-89-998699978987788999996069--579999688999999975065665599947242475135 Q ss_pred C-CCCHHHHHHHHHCCCC Q ss_conf 3-5222666667422234 Q gi|254780322|r 102 Q-SVDLILSPLNLHIIND 118 (273) Q Consensus 102 ~-sfDli~s~~~l~w~~d 118 (273) T Consensus 93 l~~~~~vVaNlPY~Issp 110 (259) T COG0030 93 LAQPYKVVANLPYNISSP 110 (259) T ss_pred HCCCCEEEECCCCCCCHH T ss_conf 157888998089765679 |
|
| >TIGR00755 ksgA dimethyladenosine transferase; InterPro: IPR011530 This family of proteins represent the rRNA adenine dimethylases (e | Back alignment and domain information |
|---|
Probab=97.65 E-value=5.8e-05 Score=48.26 Aligned_cols=82 Identities=20% Similarity=0.197 Sum_probs=57.0 Q ss_pred HHHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHCCCCE-EEEECCHHHHHHHHH-----------HCCCCCHHHHC Q ss_conf 999999978986368987099985998589999986269708-997200113577531-----------10012001101 Q gi|254780322|r 31 RVAKEIAFRLNMINQTFENALELHGITGIVGYTCMETKKIHR-MIRAEISTEFSTLKR-----------EVISCPLEEIP 98 (273) Q Consensus 31 ~~a~~l~~~l~~~~~~~~~vLdlGcGtG~~~~~l~~~~~~~~-v~~~D~s~~~~~~~~-----------~~~~~d~e~l~ 98 (273) T Consensus 16 ~~~~~Iv~~~~~--~~~~~vlEIGPG~G~LT~~Ll~~~~--~~v~aiEiD~~l~~~L~~~~~~~~~~~~~~i~~Dalk~~ 91 (277) T TIGR00755 16 SVIQKIVEAANV--LENDVVLEIGPGLGALTEPLLKRAK--KLVTAIEIDPRLAEILRKLLSEKLYENLEVIEGDALKVD 91 (277) T ss_pred HHHHHHHHHHCC--CCCCEEEEECCCCHHHHHHHHHHCC--CEEEEEEECHHHHHHHHHHCCCCCCCCEEEEECCEEEEC T ss_conf 899999997437--8997799973882078999998259--848999726789999875215433242578714445412 Q ss_pred CC-CCCCC-----HHHHHHHHHCC Q ss_conf 43-33522-----26666674222 Q gi|254780322|r 99 SI-SQSVD-----LILSPLNLHII 116 (273) Q Consensus 99 ~~-~~sfD-----li~s~~~l~w~ 116 (273) T Consensus 92 ~~~~~~~~~~~~~~vv~NLPY~Is 115 (277) T TIGR00755 92 LNSLEDFPKEDKLKVVSNLPYNIS 115 (277) T ss_pred CCHHHHCCCCCCCEEEEECCCCHH T ss_conf 320433167898579850774324 |
g. KsgA). The bacterial enzyme KsgA catalyzes the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In yeast, and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB .; GO: 0016433 rRNA (adenine) methyltransferase activity, 0006364 rRNA processing. |
| >pfam00398 RrnaAD Ribosomal RNA adenine dimethylase | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.00014 Score=46.05 Aligned_cols=88 Identities=17% Similarity=0.229 Sum_probs=56.6 Q ss_pred HHH-HHHHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHCCCCEEEEECCHHHHHHHHH---------HCCCCCHHH Q ss_conf 899-9999999978986368987099985998589999986269708997200113577531---------100120011 Q gi|254780322|r 27 FLL-DRVAKEIAFRLNMINQTFENALELHGITGIVGYTCMETKKIHRMIRAEISTEFSTLKR---------EVISCPLEE 96 (273) Q Consensus 27 ~l~-~~~a~~l~~~l~~~~~~~~~vLdlGcGtG~~~~~l~~~~~~~~v~~~D~s~~~~~~~~---------~~~~~d~e~ 96 (273) T Consensus 12 FL~d~~i~~kIv~~~~-~-~~~d~VlEIGPG~G~LT~~L~~~~--~~v~aiE~D~~l~~~L~~~~~~~~~~~ii~~D~l~ 87 (258) T pfam00398 12 FLTNKKVINRIVDKAN-L-QESDTVLEIGPGKGALTEELAKRA--KQVVAIEIDPRLAKRLQKKLALHPNVEVVHQDFLK 87 (258) T ss_pred CCCCHHHHHHHHHHCC-C-CCCCEEEEECCCHHHHHHHHHHCC--CCEEEEECCHHHHHHHHHHHCCCCCEEEEECCHHC T ss_conf 1389999999999708-9-999979997996239999999616--94799954477999999864428977999663010 Q ss_pred HCCCCCCCCHHHHHHHHHCCCC Q ss_conf 0143335222666667422234 Q gi|254780322|r 97 IPSISQSVDLILSPLNLHIIND 118 (273) Q Consensus 97 l~~~~~sfDli~s~~~l~w~~d 118 (273) T Consensus 88 ~d~~~~~~~~vvgNLPY~Iss~ 109 (258) T pfam00398 88 FSFPKHEPFLVVGNIPYNITTP 109 (258) T ss_pred CCCCCCCCEEEEECCCCCCCHH T ss_conf 5754578616894488634178 |
|
| >pfam01269 Fibrillarin Fibrillarin | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.00032 Score=43.94 Aligned_cols=106 Identities=19% Similarity=0.163 Sum_probs=70.1 Q ss_pred HHHHHHHCC-CCCCCEEEECCCCCHHHHHHHHH-CCCCEEEEECCHHHHH------HHHHHC---CCCCHHHH---CCCC Q ss_conf 997898636-89870999859985899999862-6970899720011357------753110---01200110---1433 Q gi|254780322|r 36 IAFRLNMIN-QTFENALELHGITGIVGYTCMET-KKIHRMIRAEISTEFS------TLKREV---ISCPLEEI---PSIS 101 (273) Q Consensus 36 l~~~l~~~~-~~~~~vLdlGcGtG~~~~~l~~~-~~~~~v~~~D~s~~~~------~~~~~~---~~~d~e~l---~~~~ 101 (273) T Consensus 62 il~g~~~~~i~~gskVLYLGAasGTTVSHvsDIvg~~G~VyAVE~spr~~RdL~~la~~R~NIvPIl~DAr~P~~Y~~lv 141 (229) T pfam01269 62 ILKGLDDIPIKPGSKVLYLGAASGTTVSHVSDIVGPEGVVYAVEFSPRVGRELINVAKKRPNIVPILEDARHPQKYRMLV 141 (229) T ss_pred HHCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHC T ss_conf 97587556858998799944777985767887228895399997173557899999742799445766778756765425 Q ss_pred CCCCHHHHHHHHHCCCCHHHHHHHHHHHHCCCCEEEEEECCC Q ss_conf 352226666674222346999999999818787089840686 Q gi|254780322|r 102 QSVDLILSPLNLHIINDTLEMFSKINHMLKPGGMFLAAIPGI 143 (273) Q Consensus 102 ~sfDli~s~~~l~w~~d~~~~l~~~~r~LkpgG~~~~s~~~~ 143 (273) T Consensus 142 ~~VD~ifqDvaQ~--~Qa~i~~~Na~~FLk~gG~~~l~iKA~ 181 (229) T pfam01269 142 EMVDVIFADVAQP--DQARILALNAKYFLKNGGYFMISIKAR 181 (229) T ss_pred CCCCEEEECCCCH--HHHHHHHHHHHHHHHCCCEEEEEEEEC T ss_conf 5666899627877--789999999998612698899999713 |
|
| >PTZ00338 dimethyladenosine transferase; Provisional | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.00021 Score=45.00 Aligned_cols=84 Identities=18% Similarity=0.158 Sum_probs=54.2 Q ss_pred HHHHH-HHHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHCCCCEEEEECCHHHHHHHH------------HHCCCC Q ss_conf 68999-99999997898636898709998599858999998626970899720011357753------------110012 Q gi|254780322|r 26 YFLLD-RVAKEIAFRLNMINQTFENALELHGITGIVGYTCMETKKIHRMIRAEISTEFSTLK------------REVISC 92 (273) Q Consensus 26 ~~l~~-~~a~~l~~~l~~~~~~~~~vLdlGcGtG~~~~~l~~~~~~~~v~~~D~s~~~~~~~------------~~~~~~ 92 (273) T Consensus 19 nFL~D~~i~~~Iv~~a-~~~-~~d~VlEIGPG~G~LT~~Ll~~~--~~v~aiEiD~~l~~~L~~~~~~~~~~~n~~ii~~ 94 (296) T PTZ00338 19 HILKNPLVLDKIVEKA-AIK-PTDTVLEIGPGTGNLTEKLLQLA--KKVIAIEIDPRMVAELKKRFQNSPLASKLQVIEG 94 (296) T ss_pred CCCCCHHHHHHHHHHC-CCC-CCCEEEEECCCCHHHHHHHHHCC--CCEEEEEECHHHHHHHHHHHHCCCCCCCCEEECC T ss_conf 2058989999999960-789-89957996685429999998358--9179999488999999999851445667357705 Q ss_pred CHHHHCCCCCCCCHHHHHHHHHC Q ss_conf 00110143335222666667422 Q gi|254780322|r 93 PLEEIPSISQSVDLILSPLNLHI 115 (273) Q Consensus 93 d~e~l~~~~~sfDli~s~~~l~w 115 (273) T Consensus 95 D~Lk~d~~--~~~~vVaNLPY~I 115 (296) T PTZ00338 95 DALKTEFP--YFDVCVANVPYQI 115 (296) T ss_pred HHHHCCCC--CCCEEEECCCCHH T ss_conf 05318564--1144663587044 |
|
| >TIGR03439 methyl_EasF probable methyltransferase domain, EasF family | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.0021 Score=39.24 Aligned_cols=104 Identities=10% Similarity=0.038 Sum_probs=59.4 Q ss_pred CCCEEEECCCCCHHHHHHHHHC----CCCEEEEECCHHHHHHHHHHC-------------CCCCHHH----HCCCC---C Q ss_conf 8709998599858999998626----970899720011357753110-------------0120011----01433---3 Q gi|254780322|r 47 FENALELHGITGIVGYTCMETK----KIHRMIRAEISTEFSTLKREV-------------ISCPLEE----IPSIS---Q 102 (273) Q Consensus 47 ~~~vLdlGcGtG~~~~~l~~~~----~~~~v~~~D~s~~~~~~~~~~-------------~~~d~e~----l~~~~---~ 102 (273) T Consensus 77 ~~~lVElGsG~~~Kt~~LL~al~~~~~~~~Y~piDIS~~~L~~s~~~l~~~~~~~l~v~~i~gdy~~~~~~l~~~~~~~~ 156 (319) T TIGR03439 77 GSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDDGLAWLKRPENRSR 156 (319) T ss_pred CCEEEEECCCCCHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCCEEEEEEECHHHHHHHCCCCCCCCC T ss_conf 97699746887245899999998549974288651769999999987424048975588887537876542057544678 Q ss_pred CCCHHHHHHHHHCCC--CHHHHHHHHH-HHHCCCCEEEEEECCCCCCHHHH Q ss_conf 522266666742223--4699999999-98187870898406867633477 Q gi|254780322|r 103 SVDLILSPLNLHIIN--DTLEMFSKIN-HMLKPGGMFLAAIPGIGTLHELR 150 (273) Q Consensus 103 sfDli~s~~~l~w~~--d~~~~l~~~~-r~LkpgG~~~~s~~~~~~~~el~ 150 (273) T Consensus 157 ~~l~~flGStIGNf~~~eA~~fL~~~~~~~l~~~d~lLiG~Dl~Kd~~~l~ 207 (319) T TIGR03439 157 PTTILWLGSSIGNFSRPEAAAFLAGFLATALSPSDSFLIGLDGCKDPDKVL 207 (319) T ss_pred CEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCHHHHH T ss_conf 759996165446789799999999999972598875896566777989989 |
This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781). |
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.00076 Score=41.76 Aligned_cols=68 Identities=16% Similarity=0.226 Sum_probs=34.4 Q ss_pred CEEEEECCHHHHHHHHHH------------CCCCCHHHHCC--CCCCCCHHHHHHH----HHCCCCHHHHHHHHHHHHCC Q ss_conf 089972001135775311------------00120011014--3335222666667----42223469999999998187 Q gi|254780322|r 71 HRMIRAEISTEFSTLKRE------------VISCPLEEIPS--ISQSVDLILSPLN----LHIINDTLEMFSKINHMLKP 132 (273) Q Consensus 71 ~~v~~~D~s~~~~~~~~~------------~~~~d~e~l~~--~~~sfDli~s~~~----l~w~~d~~~~l~~~~r~Lkp 132 (273) T Consensus 261 ~~i~G~D~D~~ai~~Ar~Na~~AGv~~~I~f~~~d~~~l~~p~~~~~~Gliv~NPPYGERLge~~~L~~LY~~lG~~lK~ 340 (716) T PRK11783 261 PKFYGSDIDPRVIQAARRNARRAGVEELITFEVKDVADLKNPLPKGPTGLVISNPPYGERLGEEPALIALYSQLGRRLKK 340 (716) T ss_pred CCEEEEECCHHHHHHHHHHHHHCCCCCCCEEEECCHHHCCCCCCCCCCCEEEECCCHHCCCCCCHHHHHHHHHHHHHHHH T ss_conf 71899959989999999999981998862999567898579877789828996785220136614689999999999996 Q ss_pred --CCEEEE Q ss_conf --870898 Q gi|254780322|r 133 --GGMFLA 138 (273) Q Consensus 133 --gG~~~~ 138 (273) T Consensus 341 ~f~GW~~~ 348 (716) T PRK11783 341 QFGGWNAA 348 (716) T ss_pred HCCCCEEE T ss_conf 58998699 |
|
| >KOG1709 consensus | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.0015 Score=40.02 Aligned_cols=97 Identities=15% Similarity=0.099 Sum_probs=70.2 Q ss_pred CCCCCCCEEEECCCCCHHHHHHHHHCCCCEEEE---ECCHHHHHHHHH---HCC---C---CCHHHHCCCCCCCCHHHHH Q ss_conf 368987099985998589999986269708997---200113577531---100---1---2001101433352226666 Q gi|254780322|r 43 INQTFENALELHGITGIVGYTCMETKKIHRMIR---AEISTEFSTLKR---EVI---S---CPLEEIPSISQSVDLILSP 110 (273) Q Consensus 43 ~~~~~~~vLdlGcGtG~~~~~l~~~~~~~~v~~---~D~s~~~~~~~~---~~~---~---~d~e~l~~~~~sfDli~s~ 110 (273) T Consensus 98 i~tkggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~V~krmr~~gw~ek~nViil~g~WeDv-l~~L~d~~FDGI~yD 176 (271) T KOG1709 98 ISTKGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPDVLKRMRDWGWREKENVIILEGRWEDV-LNTLPDKHFDGIYYD 176 (271) T ss_pred HHHCCCEEEEECCCHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHCCCCCCCCEEEEECCHHHH-HCCCCCCCCCEEEEE T ss_conf 8617964898423167788888635986317873597899999863665445468871346764-401445675626751 Q ss_pred HHHHCCCCHHHHHHHHHHHHCCCCEEEEEE Q ss_conf 674222346999999999818787089840 Q gi|254780322|r 111 LNLHIINDTLEMFSKINHMLKPGGMFLAAI 140 (273) Q Consensus 111 ~~l~w~~d~~~~l~~~~r~LkpgG~~~~s~ 140 (273) T Consensus 177 Ty~e~yEdl~~~hqh~~rLLkP~gv~SyfN 206 (271) T KOG1709 177 TYSELYEDLRHFHQHVVRLLKPEGVFSYFN 206 (271) T ss_pred CHHHHHHHHHHHHHHHHHHCCCCCEEEEEC T ss_conf 301678999999987764008774488843 |
|
| >COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.0065 Score=36.32 Aligned_cols=91 Identities=13% Similarity=0.143 Sum_probs=67.1 Q ss_pred CCCCEEEECCCC-CHHHHHHHHHCCCCEEEEECCHHHHHHHHHHCCCCCHHHHC-----------CC-CCCCCHHHHHHH Q ss_conf 987099985998-58999998626970899720011357753110012001101-----------43-335222666667 Q gi|254780322|r 46 TFENALELHGIT-GIVGYTCMETKKIHRMIRAEISTEFSTLKREVISCPLEEIP-----------SI-SQSVDLILSPLN 112 (273) Q Consensus 46 ~~~~vLdlGcGt-G~~~~~l~~~~~~~~v~~~D~s~~~~~~~~~~~~~d~e~l~-----------~~-~~sfDli~s~~~ 112 (273) T Consensus 168 ~~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~~~~~~~~~~~~~~~~~~t~g~g~D~vie~~G 247 (350) T COG1063 168 PGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGADVVVNPSEDDAGAEILELTGGRGADVVIEAVG 247 (350) T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHCCCCEEECCCCHHHHHHHHHHCCCCCCCEEEECCC T ss_conf 89989998888999999999987698279997999899999998779718724630147889998608987999999989 Q ss_pred HHCCCCHHHHHHHHHHHHCCCCEEEEEECC Q ss_conf 422234699999999981878708984068 Q gi|254780322|r 113 LHIINDTLEMFSKINHMLKPGGMFLAAIPG 142 (273) Q Consensus 113 l~w~~d~~~~l~~~~r~LkpgG~~~~s~~~ 142 (273) T Consensus 248 ------~~~~~~~ai~~~r~gG~v~~vGv~ 271 (350) T COG1063 248 ------SPPALDQALEALRPGGTVVVVGVY 271 (350) T ss_pred ------CHHHHHHHHHHCCCCCEEEEEECC T ss_conf ------979999999960259899999515 |
|
| >pfam03602 Cons_hypoth95 Conserved hypothetical protein 95 | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.0036 Score=37.84 Aligned_cols=102 Identities=14% Similarity=0.160 Sum_probs=67.7 Q ss_pred CCCCCEEEECCCCCHHHHHHHHHCCCCEEEEECCHHHHHHHHH---H-------CCCCC-HH---HHCCCCCCCCHHHHH Q ss_conf 8987099985998589999986269708997200113577531---1-------00120-01---101433352226666 Q gi|254780322|r 45 QTFENALELHGITGIVGYTCMETKKIHRMIRAEISTEFSTLKR---E-------VISCP-LE---EIPSISQSVDLILSP 110 (273) Q Consensus 45 ~~~~~vLdlGcGtG~~~~~l~~~~~~~~v~~~D~s~~~~~~~~---~-------~~~~d-~e---~l~~~~~sfDli~s~ 110 (273) T Consensus 42 i~~~~~LDLFaGSGslglEAlSRGA-~~v~fvE~~~~a~~~i~~N~~~l~~~~~~~~~~~~~~~~~~~~~~~~fdiIF~D 120 (181) T pfam03602 42 LGGARVLDLFAGSGALGLEALSRGA-SSVVFVEKDKKAVATLKENLEALGLEGAVLRMDAARALLRLAGKGPPFDLVFLD 120 (181) T ss_pred CCCCEEEECCCCCCHHHHHHHHCCC-CEEEEEECCHHHHHHHHHHHHHHCCCCEEEECCHHHHHHHHCCCCCCCCEEECC T ss_conf 4898799827872698999997699-889999699999999999999858997799810899998753357888766359 Q ss_pred HHHHCCCCHHHHHHHHH--HHHCCCCEEEEEECCCCCCHH Q ss_conf 67422234699999999--981878708984068676334 Q gi|254780322|r 111 LNLHIINDTLEMFSKIN--HMLKPGGMFLAAIPGIGTLHE 148 (273) Q Consensus 111 ~~l~w~~d~~~~l~~~~--r~LkpgG~~~~s~~~~~~~~e 148 (273) T Consensus 121 PPY~~-~~~~~~l~~l~~~~~l~~~~iiiiE~~~~~~~~~ 159 (181) T pfam03602 121 PPYAK-GLIEEALELLAEKGWLNPNALIVVETESDEELPE 159 (181) T ss_pred CCCCC-HHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCC T ss_conf 97542-0699999999966665798099999668778666 |
|
| >PRK04266 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.0013 Score=40.43 Aligned_cols=100 Identities=18% Similarity=0.189 Sum_probs=68.5 Q ss_pred HHHCC-CCCCCEEEECCCCCHHHHHHHHHCCCCEEEEECCHHHHHH------HHHHC---CCCCHHHH----CCCCCCCC Q ss_conf 98636-8987099985998589999986269708997200113577------53110---01200110----14333522 Q gi|254780322|r 40 LNMIN-QTFENALELHGITGIVGYTCMETKKIHRMIRAEISTEFST------LKREV---ISCPLEEI----PSISQSVD 105 (273) Q Consensus 40 l~~~~-~~~~~vLdlGcGtG~~~~~l~~~~~~~~v~~~D~s~~~~~------~~~~~---~~~d~e~l----~~~~~sfD 105 (273) T Consensus 65 ~~~~~i~~gskVLYLGAasGTTVSHvsDiV~~G~VyAVE~spr~~RdL~~la~~R~NivPIl~DAr~P~~Y~~~v-~~VD 143 (226) T PRK04266 65 LKNFPIKKGSKVLYLGAASGTTVSHVSDIVEEGRVYAVEFAPRVMRELLLVAEERKNIIPILGDARKPEEYAHLV-EKVD 143 (226) T ss_pred CCCCCCCCCCEEEEECCCCCCCHHHHHHHCCCCEEEEEEECCHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHC-CCCC T ss_conf 755675899879995477798488898751796499998270778999999850899625754678845644205-6565 Q ss_pred HHHHHHHHHCCCCH-HHHHHHHHHHHCCCCEEEEEECCC Q ss_conf 26666674222346-999999999818787089840686 Q gi|254780322|r 106 LILSPLNLHIINDT-LEMFSKINHMLKPGGMFLAAIPGI 143 (273) Q Consensus 106 li~s~~~l~w~~d~-~~~l~~~~r~LkpgG~~~~s~~~~ 143 (273) T Consensus 144 ~i~qDvAQ---~dQa~I~~~Na~~FLk~gG~~~l~iKA~ 179 (226) T PRK04266 144 VIYQDVAQ---PNQAEIAADNADIFLKPGGYLMLAIKAR 179 (226) T ss_pred EEEEECCC---HHHHHHHHHHHHHHHHCCCEEEEEEEEE T ss_conf 89960677---4289999999998601598899999742 |
|
| >COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.0029 Score=38.40 Aligned_cols=102 Identities=11% Similarity=0.164 Sum_probs=71.4 Q ss_pred CCCCCEEEECCCCCHHHHHHHHHCCCCEEEEECCHHHHHHHHHHC------------------CCCCHHHH-CCCCCCCC Q ss_conf 898709998599858999998626970899720011357753110------------------01200110-14333522 Q gi|254780322|r 45 QTFENALELHGITGIVGYTCMETKKIHRMIRAEISTEFSTLKREV------------------ISCPLEEI-PSISQSVD 105 (273) Q Consensus 45 ~~~~~vLdlGcGtG~~~~~l~~~~~~~~v~~~D~s~~~~~~~~~~------------------~~~d~e~l-~~~~~sfD 105 (273) T Consensus 288 ~~a~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~fD 367 (508) T COG4262 288 RGARSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADMFD 367 (508) T ss_pred CCCCEEEEECCCCHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCHHHHHHHHCCCCC T ss_conf 66426999728751879999718885527897438899987300267666036776687569996547889974134555 Q ss_pred HHHHHHHHHCCCCH----------HHHHHHHHHHHCCCCEEEEEECCCCCCHHHHH Q ss_conf 26666674222346----------99999999981878708984068676334778 Q gi|254780322|r 106 LILSPLNLHIINDT----------LEMFSKINHMLKPGGMFLAAIPGIGTLHELRK 151 (273) Q Consensus 106 li~s~~~l~w~~d~----------~~~l~~~~r~LkpgG~~~~s~~~~~~~~el~~ 151 (273) T Consensus 368 ~vIVDl-----~DP~tps~~rlYS~eFY~ll~~~l~e~Gl~VvQags~y~tp~vfw 418 (508) T COG4262 368 VVIVDL-----PDPSTPSIGRLYSVEFYRLLSRHLAETGLMVVQAGSPYFTPRVFW 418 (508) T ss_pred EEEEEC-----CCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCEEE T ss_conf 799968-----998995134321089999999733757549995488765773011 |
|
| >PTZ00146 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.0015 Score=40.03 Aligned_cols=106 Identities=18% Similarity=0.129 Sum_probs=70.0 Q ss_pred HHHHHHHCC-CCCCCEEEECCCCCHHHHHHHHH-CCCCEEEEECCHHHH----HHH--HHHC---CCCCHHHH---CCCC Q ss_conf 997898636-89870999859985899999862-697089972001135----775--3110---01200110---1433 Q gi|254780322|r 36 IAFRLNMIN-QTFENALELHGITGIVGYTCMET-KKIHRMIRAEISTEF----STL--KREV---ISCPLEEI---PSIS 101 (273) Q Consensus 36 l~~~l~~~~-~~~~~vLdlGcGtG~~~~~l~~~-~~~~~v~~~D~s~~~----~~~--~~~~---~~~d~e~l---~~~~ 101 (273) T Consensus 124 Il~Gl~~i~Ik~GskVLYLGAasGTTVSHVSDIVG~~G~VYAVEfSpr~~RdLl~lA~~R~NIvPIleDAr~P~kYr~lV 203 (296) T PTZ00146 124 IYGGVASIPIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLVEMAKRRTNIVPIIEDARYPQKYRMLV 203 (296) T ss_pred HHCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHCCCCCEEEEEEECCHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHC T ss_conf 97696444437999899851467986556665017886199997064668899999722798335777789746755424 Q ss_pred CCCCHHHHHHHHHCCCCHHHHHHHHHHHHCCCCEEEEEECCC Q ss_conf 352226666674222346999999999818787089840686 Q gi|254780322|r 102 QSVDLILSPLNLHIINDTLEMFSKINHMLKPGGMFLAAIPGI 143 (273) Q Consensus 102 ~sfDli~s~~~l~w~~d~~~~l~~~~r~LkpgG~~~~s~~~~ 143 (273) T Consensus 204 ~~VDvIf~DVAQp--dQarI~~~Na~~FLK~gG~~~i~IKAr 243 (296) T PTZ00146 204 PMVDCIFADVAQP--DQARIVALNAQHFLKNGGHFVISIKAN 243 (296) T ss_pred CCCCEEEECCCCH--HHHHHHHHHHHHHHHCCCEEEEEEECC T ss_conf 5555899617876--589999999998531698899999726 |
|
| >PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.0058 Score=36.61 Aligned_cols=101 Identities=10% Similarity=0.065 Sum_probs=64.7 Q ss_pred CCCCEEEECCCCCHHHHHHHHHCCCCEEEEECCHHHHHHHH-----------HHCCCCCHHH-HCCCCCCCCHHHHHHHH Q ss_conf 98709998599858999998626970899720011357753-----------1100120011-01433352226666674 Q gi|254780322|r 46 TFENALELHGITGIVGYTCMETKKIHRMIRAEISTEFSTLK-----------REVISCPLEE-IPSISQSVDLILSPLNL 113 (273) Q Consensus 46 ~~~~vLdlGcGtG~~~~~l~~~~~~~~v~~~D~s~~~~~~~-----------~~~~~~d~e~-l~~~~~sfDli~s~~~l 113 (273) T Consensus 52 ~~~~vLDLFAGSGalGlEALSRGA-~~v~fVE~~~~~~~~i~~N~~~l~~~~~~ii~~da~~~L~~~~~~fDlIF~DPPY 130 (198) T PRK10909 52 VDARCLDCFAGSGALGLEALSRYA-AGATLLEMDRAVSQQLIKNLATLKAGNARVVNTNALSFLAQPGTPHNVVFVDPPF 130 (198) T ss_pred CCCEEEECCCCCCHHHHHHHHCCC-CEEEEEECCHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHCCCCCEEEEEECCCC T ss_conf 998799827774688999998799-7899997899999999999998488867999556999862559952189989997 Q ss_pred HCCCCHHHHHHHH--HHHHCCCCEEEEEECCCCCCHH Q ss_conf 2223469999999--9981878708984068676334 Q gi|254780322|r 114 HIINDTLEMFSKI--NHMLKPGGMFLAAIPGIGTLHE 148 (273) Q Consensus 114 ~w~~d~~~~l~~~--~r~LkpgG~~~~s~~~~~~~~e 148 (273) T Consensus 131 ~~-~~~~~~l~~l~~~~~L~~~gliiiE~~~~~~l~~ 166 (198) T PRK10909 131 RK-GLLEETINLLEQNGWLADDALIYVESEVENGLPT 166 (198) T ss_pred CC-CHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCC T ss_conf 65-5599999999988891899699999548888777 |
|
| >pfam08123 DOT1 Histone methylation protein DOT1 | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.0034 Score=37.97 Aligned_cols=95 Identities=15% Similarity=0.108 Sum_probs=61.4 Q ss_pred HHCCCCC-CCEEEECCCCCHHHHHHHHHCCCCEEEEECCHHHHHHHHH--------------------HCCCCCHHHHCC Q ss_conf 8636898-7099985998589999986269708997200113577531--------------------100120011014 Q gi|254780322|r 41 NMINQTF-ENALELHGITGIVGYTCMETKKIHRMIRAEISTEFSTLKR--------------------EVISCPLEEIPS 99 (273) Q Consensus 41 ~~~~~~~-~~vLdlGcGtG~~~~~l~~~~~~~~v~~~D~s~~~~~~~~--------------------~~~~~d~e~l~~ 99 (273) T Consensus 36 ~~~~l~~~dvF~DLGSGVGnvv~QaAl~tgc~~s~GiEi~~~~a~~A~~~~~~~~~~~~~~G~~~~~~~l~~gdFl~~-- 113 (205) T pfam08123 36 DKCNLGPQDVFVDLGSGVGNCVLQAALEFGCKLSFGCEIMDNASNLAELQDEEFKKRCKLFGKKLGKIEFIRGSFLDN-- 113 (205) T ss_pred HHHCCCCCCEEEECCCCCCHHHHHHHHHHCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCC-- T ss_conf 983989768899858883299999998709653888886566899999999999999999588768738997777885-- Q ss_pred CCCCCCHHHHHHHHHCC------CCHHHHHHHHHHHHCCCCEEEEE Q ss_conf 33352226666674222------34699999999981878708984 Q gi|254780322|r 100 ISQSVDLILSPLNLHII------NDTLEMFSKINHMLKPGGMFLAA 139 (273) Q Consensus 100 ~~~sfDli~s~~~l~w~------~d~~~~l~~~~r~LkpgG~~~~s 139 (273) T Consensus 114 --~~~~~~~~~a~VI~vNN~~F~~~Ln~~L~e~f~~lk~GtkIVS~ 157 (205) T pfam08123 114 --ERVEEIIPEADVILVNNFAFDPELNLQLKEMLQDLKDGCKIISL 157 (205) T ss_pred --HHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHCCCCCCEEEEC T ss_conf --88998634798899943246988999999999729998889977 |
The DOT1 domain regulates gene expression by methylating histone H3. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast. |
| >PRK09880 L-idonate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.0063 Score=36.38 Aligned_cols=90 Identities=8% Similarity=0.002 Sum_probs=60.4 Q ss_pred CCCCEEEECCCCCH-HHHHHHHHCCCCEEEEECCHHHHHHHHHHC-----CC---CCHHHHCCCCCCCCHHHHHHHHHCC Q ss_conf 98709998599858-999998626970899720011357753110-----01---2001101433352226666674222 Q gi|254780322|r 46 TFENALELHGITGI-VGYTCMETKKIHRMIRAEISTEFSTLKREV-----IS---CPLEEIPSISQSVDLILSPLNLHII 116 (273) Q Consensus 46 ~~~~vLdlGcGtG~-~~~~l~~~~~~~~v~~~D~s~~~~~~~~~~-----~~---~d~e~l~~~~~sfDli~s~~~l~w~ 116 (273) T Consensus 169 ~g~~VlV~G~G~iGl~~~~~ak~~Ga~~Vi~~d~~~~rl~~a~~~Ga~~~i~~~~~~~~~~~~~~g~~Dvvie~~G---- 244 (343) T PRK09880 169 QGKRVFISGVGPIGCLIVSAVKTLGAAEIVCADLSPRSLSLARQMGADVLVNPQNDDMDHWKAEKGYFDVSFEVSG---- 244 (343) T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCEEECCCCCCHHHHHHHCCCCCEEEEECC---- T ss_conf 6988999847767999999999869987999979789999999729979987987439999963699778999219---- Q ss_pred CCHHHHHHHHHHHHCCCCEEEEEEC Q ss_conf 3469999999998187870898406 Q gi|254780322|r 117 NDTLEMFSKINHMLKPGGMFLAAIP 141 (273) Q Consensus 117 ~d~~~~l~~~~r~LkpgG~~~~s~~ 141 (273) T Consensus 245 --~~~~~~~al~~~r~gG~iv~vG~ 267 (343) T PRK09880 245 --HPSSVNTCLEVTRAKGVMVQVGM 267 (343) T ss_pred --CHHHHHHHHHHCCCCEEEEEEEC T ss_conf --99999999973779839999972 |
|
| >COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.0045 Score=37.26 Aligned_cols=106 Identities=13% Similarity=0.078 Sum_probs=65.2 Q ss_pred CCCCEEEECCCCCHHHHHHHHHCCCC-EEEEECCHHHHHHHHH---------------HCCCCCHHHHCCCCCCCCHHHH Q ss_conf 98709998599858999998626970-8997200113577531---------------1001200110143335222666 Q gi|254780322|r 46 TFENALELHGITGIVGYTCMETKKIH-RMIRAEISTEFSTLKR---------------EVISCPLEEIPSISQSVDLILS 109 (273) Q Consensus 46 ~~~~vLdlGcGtG~~~~~l~~~~~~~-~v~~~D~s~~~~~~~~---------------~~~~~d~e~l~~~~~sfDli~s 109 (273) T Consensus 113 apqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~t~~td~r~s~vt~dRl~lp~-ad~ytl~i~ 191 (484) T COG5459 113 APQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVSTEKTDWRASDVTEDRLSLPA-ADLYTLAIV 191 (484) T ss_pred CCCHHHCCCCCCCHHHHHHCCCCCCCHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCHHCCCCCC-CCEEEHHHH T ss_conf 8610200377875212332033788022123404899999999998604533477778865021047883-223633343 Q ss_pred HHH-HHCCCC--HHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHH Q ss_conf 667-422234--6999999999818787089840686763347788 Q gi|254780322|r 110 PLN-LHIIND--TLEMFSKINHMLKPGGMFLAAIPGIGTLHELRKA 152 (273) Q Consensus 110 ~~~-l~w~~d--~~~~l~~~~r~LkpgG~~~~s~~~~~~~~el~~~ 152 (273) T Consensus 192 ~~eLl~d~~ek~i~~~ie~lw~l~~~gg~lVivErGtp~Gf~~I~r 237 (484) T COG5459 192 LDELLPDGNEKPIQVNIERLWNLLAPGGHLVIVERGTPAGFERILR 237 (484) T ss_pred HHHHCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHH T ss_conf 5444435574318899999998606897499971798236999999 |
|
| >KOG1663 consensus | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.01 Score=35.17 Aligned_cols=92 Identities=18% Similarity=0.277 Sum_probs=66.2 Q ss_pred CCCCEEEECCCCCHHHHHHHHH-CCCCEEEEECCHHHHHHHHHH------------CCCCCH----HHH--CCCCCCCCH Q ss_conf 9870999859985899999862-697089972001135775311------------001200----110--143335222 Q gi|254780322|r 46 TFENALELHGITGIVGYTCMET-KKIHRMIRAEISTEFSTLKRE------------VISCPL----EEI--PSISQSVDL 106 (273) Q Consensus 46 ~~~~vLdlGcGtG~~~~~l~~~-~~~~~v~~~D~s~~~~~~~~~------------~~~~d~----e~l--~~~~~sfDl 106 (273) T Consensus 73 ~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~esLd~l~~~~~~~tfDf 152 (237) T KOG1663 73 NAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALESLDELLADGESGTFDF 152 (237) T ss_pred CCCEEEEEECCCCHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHCCCCCCEEE T ss_conf 87338998121278999999745999659999618688887599998606330342342525666999985579984259 Q ss_pred HHHHHHHHCCCCHHHHHHHHHHHHCCCCEEEEEE Q ss_conf 6666674222346999999999818787089840 Q gi|254780322|r 107 ILSPLNLHIINDTLEMFSKINHMLKPGGMFLAAI 140 (273) Q Consensus 107 i~s~~~l~w~~d~~~~l~~~~r~LkpgG~~~~s~ 140 (273) T Consensus 153 aFvDa---dK~nY~~y~e~~l~Llr~GGvi~~DN 183 (237) T KOG1663 153 AFVDA---DKDNYSNYYERLLRLLRVGGVIVVDN 183 (237) T ss_pred EEECC---CHHHHHHHHHHHHHHCCCCCEEEEEC T ss_conf 99736---66778999999985621353899922 |
|
| >TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.014 Score=34.42 Aligned_cols=89 Identities=8% Similarity=0.005 Sum_probs=58.9 Q ss_pred CCCCEEEECCCCC-HHHHHHHHHCCCCEEEEECCHHHHHHHHHHC-----CCCCHHHH-----CC-CCCCCCHHHHHHHH Q ss_conf 9870999859985-8999998626970899720011357753110-----01200110-----14-33352226666674 Q gi|254780322|r 46 TFENALELHGITG-IVGYTCMETKKIHRMIRAEISTEFSTLKREV-----ISCPLEEI-----PS-ISQSVDLILSPLNL 113 (273) Q Consensus 46 ~~~~vLdlGcGtG-~~~~~l~~~~~~~~v~~~D~s~~~~~~~~~~-----~~~d~e~l-----~~-~~~sfDli~s~~~l 113 (273) T Consensus 176 ~g~~VlV~GaG~iGl~a~~~ak~~Ga~~Vi~~d~~~~rl~~A~~lGa~~~i~~~~~~~~~~v~~~t~g~G~Dvvie~~G- 254 (358) T TIGR03451 176 RGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKLEWAREFGATHTVNSSGTDPVEAIRALTGGFGADVVIDAVG- 254 (358) T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHCCCCCCEEEECCC- T ss_conf 9988999673769999999999839918999919889999999659909973998788999999858988749999999- Q ss_pred HCCCCHHHHHHHHHHHHCCCCEEEEEE Q ss_conf 222346999999999818787089840 Q gi|254780322|r 114 HIINDTLEMFSKINHMLKPGGMFLAAI 140 (273) Q Consensus 114 ~w~~d~~~~l~~~~r~LkpgG~~~~s~ 140 (273) T Consensus 255 -----~~~~~~~al~~~~~gG~iv~~G 276 (358) T TIGR03451 255 -----RPETYKQAFYARDLAGTVVLVG 276 (358) T ss_pred -----CHHHHHHHHHHHCCCCEEEEEE T ss_conf -----9899999999762796999992 |
Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione. |
| >KOG3201 consensus | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.001 Score=41.06 Aligned_cols=98 Identities=16% Similarity=0.085 Sum_probs=69.6 Q ss_pred CCCEEEECCCCCHHHHHHH-HHCCCCEEEEECCHHHHHHHHHHCCCC----------------CHHHHCCCCCCCCHHHH Q ss_conf 8709998599858999998-626970899720011357753110012----------------00110143335222666 Q gi|254780322|r 47 FENALELHGITGIVGYTCM-ETKKIHRMIRAEISTEFSTLKREVISC----------------PLEEIPSISQSVDLILS 109 (273) Q Consensus 47 ~~~vLdlGcGtG~~~~~l~-~~~~~~~v~~~D~s~~~~~~~~~~~~~----------------d~e~l~~~~~sfDli~s 109 (273) T Consensus 30 g~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~~~~aqsq~eq~tFDiIla 109 (201) T KOG3201 30 GRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWLIWGAQSQQEQHTFDIILA 109 (201) T ss_pred HHHHHHHCCCHHHHHHHHEEEECCCCEEEEECCCHHHHHHHHHHHHCCCCCCCCEEHHHHHHHHHHHHHHHHCCCCEEEE T ss_conf 78898726744655455204535873588716978999979999851200256500034787764488875170227986 Q ss_pred HHHHHCCCCHHHHHHHHHHHHCCCCEEEEEECCCC Q ss_conf 66742223469999999998187870898406867 Q gi|254780322|r 110 PLNLHIINDTLEMFSKINHMLKPGGMFLAAIPGIG 144 (273) Q Consensus 110 ~~~l~w~~d~~~~l~~~~r~LkpgG~~~~s~~~~~ 144 (273) T Consensus 110 ADClFfdE~h~sLvdtIk~lL~p~g~Al~fsPRRg 144 (201) T KOG3201 110 ADCLFFDEHHESLVDTIKSLLRPSGRALLFSPRRG 144 (201) T ss_pred CCCHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCC T ss_conf 01025889999999999998584666167667555 |
|
| >pfam05971 Methyltransf_10 Protein of unknown function (DUF890) | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.016 Score=34.10 Aligned_cols=70 Identities=11% Similarity=0.071 Sum_probs=48.8 Q ss_pred CCEEEECCCCCHHHHHHHHHCCCCEEEEECCHHHHHHHHHHCCCCCH--------------H----HHCCCCCCCCHHHH Q ss_conf 70999859985899999862697089972001135775311001200--------------1----10143335222666 Q gi|254780322|r 48 ENALELHGITGIVGYTCMETKKIHRMIRAEISTEFSTLKREVISCPL--------------E----EIPSISQSVDLILS 109 (273) Q Consensus 48 ~~vLdlGcGtG~~~~~l~~~~~~~~v~~~D~s~~~~~~~~~~~~~d~--------------e----~l~~~~~sfDli~s 109 (273) T Consensus 67 v~gLDIGtGAscIYPLLg~~~y~W~fvgtDId~~sl~~A~~nv~~N~~L~~~I~l~~q~~~~~if~gii~~~e~fdftmC 146 (254) T pfam05971 67 RRALDIGTGANCIYPLLGVTEYGWRFVGSEVDPQSLNSAKAIVEANPNLSDAIELRRQPQSTLIFNGLIGENERYDFTLC 146 (254) T ss_pred CEEEEECCCHHHHHHHHCCCCCCCEEEEEECCHHHHHHHHHHHHHCCCCHHCEEEEECCCCCCCCCCCCCCCCCEEEEEC T ss_conf 46777336641577754040048637976279899999999998583323116999637811022344687660666303 Q ss_pred HHHHHCCC Q ss_conf 66742223 Q gi|254780322|r 110 PLNLHIIN 117 (273) Q Consensus 110 ~~~l~w~~ 117 (273) T Consensus 147 NPPF~~S~ 154 (254) T pfam05971 147 NPPFHASL 154 (254) T ss_pred CCCCCCCH T ss_conf 79866788 |
This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of this family is unknown. |
| >TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA; InterPro: IPR001566 This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.0067 Score=36.23 Aligned_cols=99 Identities=18% Similarity=0.197 Sum_probs=65.7 Q ss_pred HHHHHHHHHHH-HCCCCC-CCEEEECCCCCHHHHHHHHHCCCCEEEEECCHHHHHHHHH-----------HCCCCCHHH- Q ss_conf 99999997898-636898-7099985998589999986269708997200113577531-----------100120011- Q gi|254780322|r 31 RVAKEIAFRLN-MINQTF-ENALELHGITGIVGYTCMETKKIHRMIRAEISTEFSTLKR-----------EVISCPLEE- 96 (273) Q Consensus 31 ~~a~~l~~~l~-~~~~~~-~~vLdlGcGtG~~~~~l~~~~~~~~v~~~D~s~~~~~~~~-----------~~~~~d~e~- 96 (273) T Consensus 277 ~~~~~l~~~a~~~l~Lqg~e~V~DayCG~GtftLpLA~qa--k~v~G~E~v~e~v~~a~~NAe~Ng~~N~~F~~g~~E~~ 354 (434) T TIGR00479 277 EQTEKLVDRALEALELQGEEKVVDAYCGVGTFTLPLAKQA--KSVVGVEVVPESVEDAKRNAELNGIANVEFLAGTLETV 354 (434) T ss_pred HHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHCC--CEEEEEECCHHHHHHHHHHHHHCCCCCHHHHHHHHHHH T ss_conf 6779999999999715986557863157552004444012--18888714376789998888860353201333123211 Q ss_pred ---HCCCCCCCCHHHHHHHHHCCCCHH------HHHHHHHHHHCCCCEEEEEE Q ss_conf ---014333522266666742223469------99999999818787089840 Q gi|254780322|r 97 ---IPSISQSVDLILSPLNLHIINDTL------EMFSKINHMLKPGGMFLAAI 140 (273) Q Consensus 97 ---l~~~~~sfDli~s~~~l~w~~d~~------~~l~~~~r~LkpgG~~~~s~ 140 (273) T Consensus 355 ~p~~~~e~~~~D~~ll--------DPPR~GCa~~~L~~I~~-~kP~rivYVSC 398 (434) T TIGR00479 355 LPKQPWEGISPDVVLL--------DPPRKGCAAEVLRTIIK-LKPKRIVYVSC 398 (434) T ss_pred CCCCCCCCCCCCEEEE--------CCCCCCCHHHHHHHHHH-CCCEEEEEEEC T ss_conf 0144222677898888--------88898745899998862-07705999844 |
The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA .; GO: 0003723 RNA binding, 0008173 RNA methyltransferase activity, 0006396 RNA processing. |
| >pfam03059 NAS Nicotianamine synthase protein | Back alignment and domain information |
|---|
Probab=96.35 E-value=0.047 Score=31.33 Aligned_cols=96 Identities=4% Similarity=0.035 Sum_probs=73.2 Q ss_pred CCCCCCEEEECCCCCHHHHHHHH--HCCCCEEEEECCHHHHHHHHHH-------------CCCCCHHHHCCCCCCCCHHH Q ss_conf 68987099985998589999986--2697089972001135775311-------------00120011014333522266 Q gi|254780322|r 44 NQTFENALELHGITGIVGYTCME--TKKIHRMIRAEISTEFSTLKRE-------------VISCPLEEIPSISQSVDLIL 108 (273) Q Consensus 44 ~~~~~~vLdlGcGtG~~~~~l~~--~~~~~~v~~~D~s~~~~~~~~~-------------~~~~d~e~l~~~~~sfDli~ 108 (273) T Consensus 119 ~~~p~~vAFIGSGPLPLTsivLa~~h~~~~~~~niD~d~~A~~~A~~lv~~~g~ls~~m~f~t~d~~~~~~~l~~~DvV~ 198 (277) T pfam03059 119 TGVPSRIAFIGSGPLPLTSIVLASYHLPDTSFDNYDIDGLANDRASKLVSSDPDLSSRMSFHTADVLDVTTELKAYDVVF 198 (277) T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHCCCCCEEECCCCCHHHHHHHHHHHHHCCCHHCCEEEEECCCCCCCCCCCCCCEEE T ss_conf 89974489963788613899998850887314331278899999999998655300472899526444444445476898 Q ss_pred HHHHHHCC-CCHHHHHHHHHHHHCCCCEEEEE Q ss_conf 66674222-34699999999981878708984 Q gi|254780322|r 109 SPLNLHII-NDTLEMFSKINHMLKPGGMFLAA 139 (273) Q Consensus 109 s~~~l~w~-~d~~~~l~~~~r~LkpgG~~~~s 139 (273) T Consensus 199 lAALVGm~~e~K~~I~~hL~k~m~~Ga~l~~R 230 (277) T pfam03059 199 LAALVGMDKEEKAKVIDHLGKHMAPGALLVLR 230 (277) T ss_pred EHHHCCCCHHHHHHHHHHHHHHCCCCCEEEEE T ss_conf 72113543335999999999745899679996 |
Nicotianamine synthase EC:2.5.1.43 catalyses the trimerisation of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is great |
| >KOG0024 consensus | Back alignment and domain information |
|---|
Probab=96.31 E-value=0.052 Score=31.03 Aligned_cols=99 Identities=10% Similarity=0.067 Sum_probs=66.9 Q ss_pred HHHHCCCCCCCEEEECCCC-CHHHHHHHHHCCCCEEEEECCHHHHHHHHHHCCCCCH----------H------HHCCCC Q ss_conf 8986368987099985998-5899999862697089972001135775311001200----------1------101433 Q gi|254780322|r 39 RLNMINQTFENALELHGIT-GIVGYTCMETKKIHRMIRAEISTEFSTLKREVISCPL----------E------EIPSIS 101 (273) Q Consensus 39 ~l~~~~~~~~~vLdlGcGt-G~~~~~l~~~~~~~~v~~~D~s~~~~~~~~~~~~~d~----------e------~l~~~~ 101 (273) T Consensus 163 r~~~vk-~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~~-Ga~~~~~~~~~~~~~~~~~~v~~~~g~ 240 (354) T KOG0024 163 RRAGVK-KGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKKF-GATVTDPSSHKSSPQELAELVEKALGK 240 (354) T ss_pred HHCCCC-CCCEEEEECCCHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHH-CCEEEECCCCCCCHHHHHHHHHHHCCC T ss_conf 324766-688689976768999999999874987289960677799999982-975773044556589999999864166 Q ss_pred CCCCHHHHHHHHHCCCCHHHHHHHHHHHHCCCCEEEEEECCCCC Q ss_conf 35222666667422234699999999981878708984068676 Q gi|254780322|r 102 QSVDLILSPLNLHIINDTLEMFSKINHMLKPGGMFLAAIPGIGT 145 (273) Q Consensus 102 ~sfDli~s~~~l~w~~d~~~~l~~~~r~LkpgG~~~~s~~~~~~ 145 (273) T Consensus 241 ~~~d~~~dCsG~------~~~~~aai~a~r~gGt~vlvg~g~~~ 278 (354) T KOG0024 241 KQPDVTFDCSGA------EVTIRAAIKATRSGGTVVLVGMGAEE 278 (354) T ss_pred CCCCEEEECCCC------HHHHHHHHHHHCCCCEEEEECCCCCC T ss_conf 679868986660------46689899875128789996547876 |
|
| >pfam03269 DUF268 Caenorhabditis protein of unknown function, DUF268 | Back alignment and domain information |
|---|
Probab=96.21 E-value=0.0099 Score=35.24 Aligned_cols=100 Identities=15% Similarity=0.190 Sum_probs=66.6 Q ss_pred CCCEEEECCCCCHHHHHHHHHCCCCEEEEECCHHHHHHH-HHHC----CCCC-HHHHCCCCCCCCHHHHHHHHHCC---- Q ss_conf 870999859985899999862697089972001135775-3110----0120-01101433352226666674222---- Q gi|254780322|r 47 FENALELHGITGIVGYTCMETKKIHRMIRAEISTEFSTL-KREV----ISCP-LEEIPSISQSVDLILSPLNLHII---- 116 (273) Q Consensus 47 ~~~vLdlGcGtG~~~~~l~~~~~~~~v~~~D~s~~~~~~-~~~~----~~~d-~e~l~~~~~sfDli~s~~~l~w~---- 116 (273) T Consensus 2 gk~glVvGS~~PWvE~~aL~~GA-~~vlTvEYn~l~i~~~~~~rlssi~p~ef~~~~~~~~~~FD~a~SfSSiEH~GLGR 80 (177) T pfam03269 2 GKSGVVIGSMQPWVEVSALQNGA-SKILTVEYNKLTIQEEFRDRLSSILPTDFAKNFKKYAESFDFAASFSSIEHSGLGR 80 (177) T ss_pred CCEEEEECCCCHHHHHHHHHCCC-CCEEEEEECCCCCCCHHHHCCCCCCHHHHHHHHHHHCCCEEEEEEEEEEEECCCCC T ss_conf 95189984775399999998188-73489972355566133210011568899999875235323899961244405655 Q ss_pred -CC------HHHHHHHHHHHHCCCCEEEEEECCCCCCH Q ss_conf -34------69999999998187870898406867633 Q gi|254780322|r 117 -ND------TLEMFSKINHMLKPGGMFLAAIPGIGTLH 147 (273) Q Consensus 117 -~d------~~~~l~~~~r~LkpgG~~~~s~~~~~~~~ 147 (273) T Consensus 81 YGDpidp~Gdlk~m~~i~~~Lk~~G~l~l~vPiG~d~v 118 (177) T pfam03269 81 YGDPIDPIGDLREMLKIKCVLKKGGLLFLGLPLGTDAI 118 (177) T ss_pred CCCCCCCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCE T ss_conf 68977985109999999986178967999953777616 |
|
| >COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.20 E-value=0.081 Score=29.94 Aligned_cols=90 Identities=12% Similarity=0.119 Sum_probs=61.0 Q ss_pred CCCCCEEEECCC-CCHHHHHHHHHCCCCEEEEECCHHHHHHHHHHC-----CCC-CHHHHCCCCCCCCHHHHHHHHHCCC Q ss_conf 898709998599-858999998626970899720011357753110-----012-0011014333522266666742223 Q gi|254780322|r 45 QTFENALELHGI-TGIVGYTCMETKKIHRMIRAEISTEFSTLKREV-----ISC-PLEEIPSISQSVDLILSPLNLHIIN 117 (273) Q Consensus 45 ~~~~~vLdlGcG-tG~~~~~l~~~~~~~~v~~~D~s~~~~~~~~~~-----~~~-d~e~l~~~~~sfDli~s~~~l~w~~ 117 (273) T Consensus 165 ~pG~~V~I~G~GGlGh~avQ~Aka~g-a~Via~~~~~~K~e~a~~lGAd~~i~~~~~~~~~~~~~~~d~ii~tv~----- 238 (339) T COG1064 165 KPGKWVAVVGAGGLGHMAVQYAKAMG-AEVIAITRSEEKLELAKKLGADHVINSSDSDALEAVKEIADAIIDTVG----- 238 (339) T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHCCCEEEECCCCHHHHHHHHHCCEEEECCC----- T ss_conf 99989999877489999999999869-969999578779999998488289976781166776734739999877----- Q ss_pred CHHHHHHHHHHHHCCCCEEEEEECC Q ss_conf 4699999999981878708984068 Q gi|254780322|r 118 DTLEMFSKINHMLKPGGMFLAAIPG 142 (273) Q Consensus 118 d~~~~l~~~~r~LkpgG~~~~s~~~ 142 (273) T Consensus 239 --~~~~~~~l~~l~~~G~~v~vG~~ 261 (339) T COG1064 239 --PATLEPSLKALRRGGTLVLVGLP 261 (339) T ss_pred --HHHHHHHHHHHHCCCEEEEECCC T ss_conf --45599999986429789997888 |
|
| >PRK10309 galactitol-1-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.04 E-value=0.098 Score=29.44 Aligned_cols=89 Identities=15% Similarity=0.140 Sum_probs=55.4 Q ss_pred CCCCCEEEECCCC-CHHHHHHHHHCCCCEEEEECCHHHHHHHHHHCC---CCCH-----HHH--CCCCCCCC-HHHHHHH Q ss_conf 8987099985998-589999986269708997200113577531100---1200-----110--14333522-2666667 Q gi|254780322|r 45 QTFENALELHGIT-GIVGYTCMETKKIHRMIRAEISTEFSTLKREVI---SCPL-----EEI--PSISQSVD-LILSPLN 112 (273) Q Consensus 45 ~~~~~vLdlGcGt-G~~~~~l~~~~~~~~v~~~D~s~~~~~~~~~~~---~~d~-----e~l--~~~~~sfD-li~s~~~ 112 (273) T Consensus 159 ~~g~~vlV~GaG~vGl~aiq~ak~~Ga~~V~~~d~~~~kl~~a~~lGAd~~i~~~~~~~~~~~~~~~~~~~d~vvid~~G 238 (347) T PRK10309 159 CEGKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDINSEKLALAKSLGAMQTFNSREMSAPQIQSVLRELRFDQLILETAG 238 (347) T ss_pred CCCCEEEEECCCCHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCEEECCCCCCHHHHHHHHCCCCCCEEEEECCC T ss_conf 88986999899838999999999859976999928999999999729989986887799999998629988869997999 Q ss_pred HHCCCCHHHHHHHHHHHHCCCCEEEEE Q ss_conf 422234699999999981878708984 Q gi|254780322|r 113 LHIINDTLEMFSKINHMLKPGGMFLAA 139 (273) Q Consensus 113 l~w~~d~~~~l~~~~r~LkpgG~~~~s 139 (273) T Consensus 239 ------~~~~~~~a~~~~~~~G~iv~~ 259 (347) T PRK10309 239 ------VPQTVELAIEIAGPRAQLALV 259 (347) T ss_pred ------CHHHHHHHHHHHCCCEEEEEE T ss_conf ------989999999961897499998 |
|
| >COG4076 Predicted RNA methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.02 E-value=0.05 Score=31.15 Aligned_cols=86 Identities=13% Similarity=0.205 Sum_probs=61.9 Q ss_pred CCEEEECCCCCHHHHHHHHHCCCCEEEEECCHHHHHHHHHH-----------CCCCCHHHHCCCCCCCCHHHHHHHHHC- Q ss_conf 70999859985899999862697089972001135775311-----------001200110143335222666667422- Q gi|254780322|r 48 ENALELHGITGIVGYTCMETKKIHRMIRAEISTEFSTLKRE-----------VISCPLEEIPSISQSVDLILSPLNLHI- 115 (273) Q Consensus 48 ~~vLdlGcGtG~~~~~l~~~~~~~~v~~~D~s~~~~~~~~~-----------~~~~d~e~l~~~~~sfDli~s~~~l~w- 115 (273) T Consensus 34 d~~~DLGaGsGiLs~~Aa~~--A~rViAiE~dPk~a~~a~eN~~v~g~~n~evv~gDA~~y~f--e~ADvvicEmlDTaL 109 (252) T COG4076 34 DTFADLGAGSGILSVVAAHA--AERVIAIEKDPKRARLAEENLHVPGDVNWEVVVGDARDYDF--ENADVVICEMLDTAL 109 (252) T ss_pred HCEEECCCCCCHHHHHHHHH--HCEEEEEECCCHHHHHHHHCCCCCCCCCEEEEECCCCCCCC--CCCCEEHHHHHHHHH T ss_conf 10563468863288988753--20278874180787776505777887646898055321332--345340877766776 Q ss_pred -CCCHHHHHHHHHHHHCCCCEEE Q ss_conf -2346999999999818787089 Q gi|254780322|r 116 -INDTLEMFSKINHMLKPGGMFL 137 (273) Q Consensus 116 -~~d~~~~l~~~~r~LkpgG~~~ 137 (273) T Consensus 110 i~E~qVpV~n~vleFLr~d~tii 132 (252) T COG4076 110 IEEKQVPVINAVLEFLRYDPTII 132 (252) T ss_pred HCCCCCHHHHHHHHHHHCCCCCC T ss_conf 33421289999999863388252 |
|
| >KOG1098 consensus | Back alignment and domain information |
|---|
Probab=96.02 E-value=0.015 Score=34.21 Aligned_cols=108 Identities=11% Similarity=0.121 Sum_probs=72.9 Q ss_pred CCCCEEEECCCCCHHHHHHHHHCCCCE-EEEECCHHHHHHHHHHCCCCCHHH----H----CCCCCCCCHHHHHHH---- Q ss_conf 987099985998589999986269708-997200113577531100120011----0----143335222666667---- Q gi|254780322|r 46 TFENALELHGITGIVGYTCMETKKIHR-MIRAEISTEFSTLKREVISCPLEE----I----PSISQSVDLILSPLN---- 112 (273) Q Consensus 46 ~~~~vLdlGcGtG~~~~~l~~~~~~~~-v~~~D~s~~~~~~~~~~~~~d~e~----l----~~~~~sfDli~s~~~---- 112 (273) T Consensus 44 ~a~~vlDLcaAPG~W~QVA~q~~pv~slivGvDl~pikp~~~c~t~v~dIttd~cr~~l~k~l~t~~advVLhDgapnVg 123 (780) T KOG1098 44 KAHVVLDLCAAPGGWLQVASQSMPVGSLIVGVDLVPIKPIPNCDTLVEDITTDECRSKLRKILKTWKADVVLHDGAPNVG 123 (780) T ss_pred CCCHHEECCCCCCHHHHHHHHHCCCCCEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCC T ss_conf 44111000258747999999767887348875201124687632145464288888899999872777678405888643 Q ss_pred HHCCCCH-------HHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHH Q ss_conf 4222346-------9999999998187870898406867633477889 Q gi|254780322|r 113 LHIINDT-------LEMFSKINHMLKPGGMFLAAIPGIGTLHELRKAL 153 (273) Q Consensus 113 l~w~~d~-------~~~l~~~~r~LkpgG~~~~s~~~~~~~~el~~~~ 153 (273) T Consensus 124 ~~w~~DA~~q~~L~l~al~LA~~~l~~~g~fvtkvfrs~dy~~ll~v~ 171 (780) T KOG1098 124 GNWVQDAFQQACLTLRALKLATEFLAKGGTFVTKVFRSEDYNGLLRVF 171 (780) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHH T ss_conf 167899998678899999999999974684304455677611899999 |
|
| >KOG2793 consensus | Back alignment and domain information |
|---|
Probab=95.99 E-value=0.016 Score=33.99 Aligned_cols=98 Identities=18% Similarity=0.130 Sum_probs=62.5 Q ss_pred CCCCEEEECCCCCHHHHHHHHHCCCCEEEEECCHHHHHHHHHH--------------CCC-----CCHHHHCCCCCC-CC Q ss_conf 9870999859985899999862697089972001135775311--------------001-----200110143335-22 Q gi|254780322|r 46 TFENALELHGITGIVGYTCMETKKIHRMIRAEISTEFSTLKRE--------------VIS-----CPLEEIPSISQS-VD 105 (273) Q Consensus 46 ~~~~vLdlGcGtG~~~~~l~~~~~~~~v~~~D~s~~~~~~~~~--------------~~~-----~d~e~l~~~~~s-fD 105 (273) T Consensus 86 ~~~~vlELGsGtg-lvG~~aa~~~~~~v~ltD~~~~~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~~~~~D 164 (248) T KOG2793 86 KYINVLELGSGTG-LVGILAALLLGAEVVLTDLPKVVENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFRLPNPFD 164 (248) T ss_pred CCEEEEEECCCCC-HHHHHHHHHHCCEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCHHHCCCCCCC T ss_conf 6405899668755-899999987366451277502678888866565666640378236998746886557552687655 Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHCCCCEEEEEECCCC Q ss_conf 266666742223469999999998187870898406867 Q gi|254780322|r 106 LILSPLNLHIINDTLEMFSKINHMLKPGGMFLAAIPGIG 144 (273) Q Consensus 106 li~s~~~l~w~~d~~~~l~~~~r~LkpgG~~~~s~~~~~ 144 (273) T Consensus 165 lilasDvvy~~~~~e~Lv~tla~ll~~~~~i~l~~~lr~ 203 (248) T KOG2793 165 LILASDVVYEEESFEGLVKTLAFLLAKDGTIFLAYPLRR 203 (248) T ss_pred EEEEEEEEECCCCCHHHHHHHHHHHHCCCEEEEEEECCC T ss_conf 799853055177614699999999743884899986002 |
|
| >KOG1099 consensus | Back alignment and domain information |
|---|
Probab=95.92 E-value=0.0037 Score=37.76 Aligned_cols=103 Identities=17% Similarity=0.190 Sum_probs=72.9 Q ss_pred CCCEEEECCCCCHHHHHHHHH-CC----C-C---EEEEECCHHHHHHHHHHCCCCCHHHH--------CCCCCCCCHHHH Q ss_conf 870999859985899999862-69----7-0---89972001135775311001200110--------143335222666 Q gi|254780322|r 47 FENALELHGITGIVGYTCMET-KK----I-H---RMIRAEISTEFSTLKREVISCPLEEI--------PSISQSVDLILS 109 (273) Q Consensus 47 ~~~vLdlGcGtG~~~~~l~~~-~~----~-~---~v~~~D~s~~~~~~~~~~~~~d~e~l--------~~~~~sfDli~s 109 (273) T Consensus 42 v~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~MaPI~GV~qlq~DIT~~stae~Ii~hfggekAdlVvc 121 (294) T KOG1099 42 VKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPMAPIEGVIQLQGDITSASTAEAIIEHFGGEKADLVVC 121 (294) T ss_pred HHHHHHHHCCCCCHHHHHHHHHHCCCCCCCHHHCCEEEEECCCCCCCCCEEEEECCCCCHHHHHHHHHHHCCCCCCEEEE T ss_conf 36774353089839999999973248874201162799855657766762785045577768999999857997667884 Q ss_pred HHH-----HHCCCC------HHHHHHHHHHHHCCCCEEEEEECCCCCCHHH Q ss_conf 667-----422234------6999999999818787089840686763347 Q gi|254780322|r 110 PLN-----LHIIND------TLEMFSKINHMLKPGGMFLAAIPGIGTLHEL 149 (273) Q Consensus 110 ~~~-----l~w~~d------~~~~l~~~~r~LkpgG~~~~s~~~~~~~~el 149 (273) T Consensus 122 DGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FVaKifRg~~tslL 172 (294) T KOG1099 122 DGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFVAKIFRGRDTSLL 172 (294) T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHEECCCCEEEHHHHCCCCHHHH T ss_conf 799874453208899999999999877742014787525546426750789 |
|
| >PRK10083 putative dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.91 E-value=0.11 Score=29.14 Aligned_cols=89 Identities=15% Similarity=0.154 Sum_probs=54.7 Q ss_pred CCCCCEEEECCCC-CHHHHHHHH-HCCCCEEEEECCHHHHHHHHHHC-----CCCCHHHHC--CCCCC--CCHHHHHHHH Q ss_conf 8987099985998-589999986-26970899720011357753110-----012001101--43335--2226666674 Q gi|254780322|r 45 QTFENALELHGIT-GIVGYTCME-TKKIHRMIRAEISTEFSTLKREV-----ISCPLEEIP--SISQS--VDLILSPLNL 113 (273) Q Consensus 45 ~~~~~vLdlGcGt-G~~~~~l~~-~~~~~~v~~~D~s~~~~~~~~~~-----~~~d~e~l~--~~~~s--fDli~s~~~l 113 (273) T Consensus 159 ~~g~~VlV~G~G~iGl~~~~~~~~~~ga~~Vi~~d~~~~rl~~A~~~GAd~vi~~~~~~~~~~~~~~G~~~dvvid~~g- 237 (339) T PRK10083 159 TEQDVALIYGAGPVGLTIVQVLKGVYGVKNVIVADRIDERLALAKESGADWVINNAQESLAEALAEKGVKPTLIFDAAC- 237 (339) T ss_pred CCCCEEEEECCCHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHCCCCEEECCCCCCHHHHHHHCCCCCCEEEECCC- T ss_conf 9998899958765999999999985699789993798999999997199899848876699999853999619996666- Q ss_pred HCCCCHHHHHHHHHHHHCCCCEEEEE Q ss_conf 22234699999999981878708984 Q gi|254780322|r 114 HIINDTLEMFSKINHMLKPGGMFLAA 139 (273) Q Consensus 114 ~w~~d~~~~l~~~~r~LkpgG~~~~s 139 (273) T Consensus 238 -----~~~~~~~a~~~~~~gG~iv~~ 258 (339) T PRK10083 238 -----HPSILEEAVTLASPAARIVLM 258 (339) T ss_pred -----CHHHHHHHHHHHHCCEEEEEE T ss_conf -----889999999985188099999 |
|
| >PRK05396 tdh L-threonine 3-dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=95.90 E-value=0.12 Score=28.86 Aligned_cols=90 Identities=13% Similarity=0.193 Sum_probs=59.1 Q ss_pred CCCCCCEEEECCCC-CHHHHHHHHHCCCCEEEEECCHHHHHHHHHHC-----CCCCHHHH-----CC-CCCCCCHHHHHH Q ss_conf 68987099985998-58999998626970899720011357753110-----01200110-----14-333522266666 Q gi|254780322|r 44 NQTFENALELHGIT-GIVGYTCMETKKIHRMIRAEISTEFSTLKREV-----ISCPLEEI-----PS-ISQSVDLILSPL 111 (273) Q Consensus 44 ~~~~~~vLdlGcGt-G~~~~~l~~~~~~~~v~~~D~s~~~~~~~~~~-----~~~d~e~l-----~~-~~~sfDli~s~~ 111 (273) T Consensus 161 ~~~g~~VlV~GaG~vGl~~~~~ak~~Ga~~Vi~~d~~~~kl~~a~~lGa~~~i~~~~~~~~~~~~~~t~~~G~Dvvid~~ 240 (341) T PRK05396 161 DLVGEDVLITGAGPIGIMAAAVAKHVGARHVVITDVNEYRLELARKMGATRAVNVAKEDLRDVMAELGMTEGFDVGLEMS 240 (341) T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHCCCEEEEEEECCHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHCCCCCEEEEECC T ss_conf 77888699989975432999999984992899994899999989864994999688506899999974899976999878 Q ss_pred HHHCCCCHHHHHHHHHHHHCCCCEEEEE Q ss_conf 7422234699999999981878708984 Q gi|254780322|r 112 NLHIINDTLEMFSKINHMLKPGGMFLAA 139 (273) Q Consensus 112 ~l~w~~d~~~~l~~~~r~LkpgG~~~~s 139 (273) T Consensus 241 G------~~~~~~~~~~~l~~gG~vv~~ 262 (341) T PRK05396 241 G------APSAFRQMLDAMNHGGRIAML 262 (341) T ss_pred C------CHHHHHHHHHHHHCCCEEEEE T ss_conf 9------899999999986359899999 |
|
| >PRK11760 putative RNA 2'-O-ribose methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=95.89 E-value=0.045 Score=31.41 Aligned_cols=102 Identities=13% Similarity=0.110 Sum_probs=69.8 Q ss_pred CCCCEEEECCCCCHHHHHHHHHCCCCEEEEECCHHHHHH----HHHHCCCCCHHHHCCCCCCCCHHHHHHHHHCCCCHHH Q ss_conf 987099985998589999986269708997200113577----5311001200110143335222666667422234699 Q gi|254780322|r 46 TFENALELHGITGIVGYTCMETKKIHRMIRAEISTEFST----LKREVISCPLEEIPSISQSVDLILSPLNLHIINDTLE 121 (273) Q Consensus 46 ~~~~vLdlGcGtG~~~~~l~~~~~~~~v~~~D~s~~~~~----~~~~~~~~d~e~l~~~~~sfDli~s~~~l~w~~d~~~ 121 (273) T Consensus 210 ~Gm~aVDLGAaPGGWT~qLv~rg--~~V~AVDnG~m~~~L~~~~~V~H~~~dgf~f~P~~~~vdwlVCDmv----ekP~r 283 (356) T PRK11760 210 SGMRAVDLGACPGGWTYQLVRRG--MFVTAVDNGPMAESLMDTGQVEHLRADGFKFRPTRKNVDWLVCDMV----EKPAR 283 (356) T ss_pred CCCEEEECCCCCCHHHHHHHHCC--CEEEEECCCCCCHHHHCCCCEEEEECCCEEECCCCCCEEEEEEECC----CCHHH T ss_conf 99758755869970589999779--8899865876787575288757881467056369985208997053----68899 Q ss_pred HHHHHHHHHCCCCEE---EEEE--CCCCCCHHHHHHHH Q ss_conf 999999981878708---9840--68676334778899 Q gi|254780322|r 122 MFSKINHMLKPGGMF---LAAI--PGIGTLHELRKALL 154 (273) Q Consensus 122 ~l~~~~r~LkpgG~~---~~s~--~~~~~~~el~~~~~ 154 (273) T Consensus 284 va~lm~~Wl~~-gw~~~aifnLKLPMKkR~~eV~~~l~ 320 (356) T PRK11760 284 VAELMAQWLVN-GWCREAIFNLKLPMKKRYEEVRQCLE 320 (356) T ss_pred HHHHHHHHHHC-CCCHHEEEEECCCCCCCHHHHHHHHH T ss_conf 99999998755-60020578851677663999999999 |
|
| >PHA02056 putative methyltransferase | Back alignment and domain information |
|---|
Probab=95.79 E-value=0.011 Score=35.06 Aligned_cols=68 Identities=19% Similarity=0.319 Sum_probs=56.4 Q ss_pred CCEEEECCCCCHHHHHHHHHCCCCEEEEECCHHHHHHHHHH------CCCCCHHHHCCCCCCCCHHHHHHHHHCC Q ss_conf 70999859985899999862697089972001135775311------0012001101433352226666674222 Q gi|254780322|r 48 ENALELHGITGIVGYTCMETKKIHRMIRAEISTEFSTLKRE------VISCPLEEIPSISQSVDLILSPLNLHII 116 (273) Q Consensus 48 ~~vLdlGcGtG~~~~~l~~~~~~~~v~~~D~s~~~~~~~~~------~~~~d~e~l~~~~~sfDli~s~~~l~w~ 116 (273) T Consensus 66 G~iiDLCAGIG~LSy~~~~r~kp~~ivCVErN~~y~~vGkkilPeAtWI~~Dv~~~~~~-~~FD~aIsNPPFG~i 139 (279) T PHA02056 66 GKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLLPEAEWITSDVFEFESN-EKFDVVISNPPFGKI 139 (279) T ss_pred CEEEEECCCCCHHHHHHHHCCCCCCEEEEEECHHHHHHHHHCCCCCEEEECCEECCCCC-CCEEEEECCCCCCCC T ss_conf 53888214612357999850688635899408579886432076402773231303566-620045338997643 |
|
| >TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=95.74 E-value=0.038 Score=31.86 Aligned_cols=89 Identities=15% Similarity=0.019 Sum_probs=58.8 Q ss_pred CCCCCEEEECCCCCHHHHH-HHHHCCCCEEEEECCHHHHHHHHHHC-----CCCC-H---HHHCCCCCCCCHHHHHHHHH Q ss_conf 8987099985998589999-98626970899720011357753110-----0120-0---11014333522266666742 Q gi|254780322|r 45 QTFENALELHGITGIVGYT-CMETKKIHRMIRAEISTEFSTLKREV-----ISCP-L---EEIPSISQSVDLILSPLNLH 114 (273) Q Consensus 45 ~~~~~vLdlGcGtG~~~~~-l~~~~~~~~v~~~D~s~~~~~~~~~~-----~~~d-~---e~l~~~~~sfDli~s~~~l~ 114 (273) T Consensus 119 ~~g~~V~V~G~G~iGl~~~~~a~~~Ga~~Vi~~d~~~~rl~~a~~~Ga~~~i~~~~~~~~~~~~~~g~g~D~vie~~G-- 196 (280) T TIGR03366 119 LKGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELALSFGATALAEPEVLAERQGGLQNGRGVDVALEFSG-- 196 (280) T ss_pred CCCCEEEEEECCHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCEEECCCCHHHHHHHHHCCCCCCEEEECCC-- T ss_conf 999989999078689999999998499879999199899999997399898377577999999727888709998789-- Q ss_pred CCCCHHHHHHHHHHHHCCCCEEEEE Q ss_conf 2234699999999981878708984 Q gi|254780322|r 115 IINDTLEMFSKINHMLKPGGMFLAA 139 (273) Q Consensus 115 w~~d~~~~l~~~~r~LkpgG~~~~s 139 (273) T Consensus 197 ----~~~~~~~a~~~l~~gG~iv~v 217 (280) T TIGR03366 197 ----ATAAVRACLESLDVGGTAVLA 217 (280) T ss_pred ----CHHHHHHHHHHHHCCCEEEEE T ss_conf ----889999999986049899998 |
This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds. |
| >KOG2920 consensus | Back alignment and domain information |
|---|
Probab=95.69 E-value=0.02 Score=33.50 Aligned_cols=95 Identities=16% Similarity=0.114 Sum_probs=58.8 Q ss_pred HCCCCCCCEEEECCCCCHHHHHHHHHCCCCEEEEECCHHHHHH-HHHHC--------------------CCC---CHHHH Q ss_conf 6368987099985998589999986269708997200113577-53110--------------------012---00110 Q gi|254780322|r 42 MINQTFENALELHGITGIVGYTCMETKKIHRMIRAEISTEFST-LKREV--------------------ISC---PLEEI 97 (273) Q Consensus 42 ~~~~~~~~vLdlGcGtG~~~~~l~~~~~~~~v~~~D~s~~~~~-~~~~~--------------------~~~---d~e~l 97 (273) T Consensus 112 ~~~~~~k~vLELgCg~~Lp~i~~~~~~~-~~~~fqD~na~vl~~~t~pn~~~~~~~~~~~~e~~~~~~i~~s~l~dg~~~ 190 (282) T KOG2920 112 QMSFSGKRVLELGCGAALPGIFAFVKGA-VSVHFQDFNAEVLRLVTLPNILVNSHAGVEEKENHKVDEILNSLLSDGVFN 190 (282) T ss_pred HEEECCCEEEECCCCCCCCCHHHHHHCC-CEEEEEECCHHHEEEECCCCEECCHHHHHHHHHCCCCEECCCCCCCCCHHH T ss_conf 3674475568637864564166664035-323347335112465214653302001023441365212123433220100 Q ss_pred CCCCCCCCHHHHHHHHHCCCCHHHH-HHHHHHHHCCCCEEE Q ss_conf 1433352226666674222346999-999999818787089 Q gi|254780322|r 98 PSISQSVDLILSPLNLHIINDTLEM-FSKINHMLKPGGMFL 137 (273) Q Consensus 98 ~~~~~sfDli~s~~~l~w~~d~~~~-l~~~~r~LkpgG~~~ 137 (273) T Consensus 191 ~t~~~~ydlIlsSetiy~~~~~~~~~~~~r~~l~~~D~~~~ 231 (282) T KOG2920 191 HTERTHYDLILSSETIYSIDSLAVLYLLHRPCLLKTDGVFY 231 (282) T ss_pred HCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCHHH T ss_conf 00331112211035551763045567666652277650256 |
|
| >PRK13771 putative alcohol dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.56 E-value=0.15 Score=28.29 Aligned_cols=86 Identities=15% Similarity=0.098 Sum_probs=53.2 Q ss_pred CCCCCEEEECC--CCCHHHHHHHHHCCCCEEEEECCHHHHHHHHHHC----CCCC--HHHHCCCCCCCCHHHHHHHHHCC Q ss_conf 89870999859--9858999998626970899720011357753110----0120--01101433352226666674222 Q gi|254780322|r 45 QTFENALELHG--ITGIVGYTCMETKKIHRMIRAEISTEFSTLKREV----ISCP--LEEIPSISQSVDLILSPLNLHII 116 (273) Q Consensus 45 ~~~~~vLdlGc--GtG~~~~~l~~~~~~~~v~~~D~s~~~~~~~~~~----~~~d--~e~l~~~~~sfDli~s~~~l~w~ 116 (273) T Consensus 161 ~~g~~VlI~Ga~G~vG~~aiqlak~~-Ga~vi~v~~~~~k~~~~~~~~~~~i~~~~~~~~~~-~~~g~Dvvid~~G---- 234 (332) T PRK13771 161 SEGETVLVTGAGGGVGIHAVQVAKAY-GAKVIAVTTSESKAKAVGKYADYVIVGSKFSEEVK-KLGGADIVIETVG---- 234 (332) T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHCCCEEEECCCHHHHHH-HCCCCCEEEECCC---- T ss_conf 99999999778775899999999986-99899994999999999856998983630578887-3468638984576---- Q ss_pred CCHHHHHHHHHHHHCCCCEEEEE Q ss_conf 34699999999981878708984 Q gi|254780322|r 117 NDTLEMFSKINHMLKPGGMFLAA 139 (273) Q Consensus 117 ~d~~~~l~~~~r~LkpgG~~~~s 139 (273) T Consensus 235 ---~~~~~~~~~~l~~~G~iv~~ 254 (332) T PRK13771 235 ---GPTLEESLRSLNWGGKIVLI 254 (332) T ss_pred ---HHHHHHHHHHHCCCCEEEEE T ss_conf ---68899888862589699999 |
|
| >COG3897 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.28 E-value=0.036 Score=31.99 Aligned_cols=103 Identities=17% Similarity=0.177 Sum_probs=65.9 Q ss_pred CCCCEEEECCCCCHHHHHHHHHCCCCEEEEECCHHHHHHHHHHCCCCC-------HHHHCCCCCCCCHHHHHHHHHCCCC Q ss_conf 987099985998589999986269708997200113577531100120-------0110143335222666667422234 Q gi|254780322|r 46 TFENALELHGITGIVGYTCMETKKIHRMIRAEISTEFSTLKREVISCP-------LEEIPSISQSVDLILSPLNLHIIND 118 (273) Q Consensus 46 ~~~~vLdlGcGtG~~~~~l~~~~~~~~v~~~D~s~~~~~~~~~~~~~d-------~e~l~~~~~sfDli~s~~~l~w~~d 118 (273) T Consensus 79 rgkrVLd~gagsgLvaIAaa~aGA-~~v~a~d~~P~~~~ai~lNa~angv~i~~~~~d~~g~~~~~Dl~LagDlfy~~~~ 157 (218) T COG3897 79 RGKRVLDLGAGSGLVAIAAARAGA-AEVVAADIDPWLEQAIRLNAAANGVSILFTHADLIGSPPAFDLLLAGDLFYNHTE 157 (218) T ss_pred CCCEEEECCCCCCHHHHHHHHHHH-HHHHHCCCCHHHHHHHHCCHHHCCCEEEEEECCCCCCCCCEEEEEEECEECCCHH T ss_conf 365324415666708899998503-7887627884788885306221562167743133689864038985030028358 Q ss_pred HHHHHHHHHHHHCCCCEE-EEEECCCCCCHHHH Q ss_conf 699999999981878708-98406867633477 Q gi|254780322|r 119 TLEMFSKINHMLKPGGMF-LAAIPGIGTLHELR 150 (273) Q Consensus 119 ~~~~l~~~~r~LkpgG~~-~~s~~~~~~~~el~ 150 (273) T Consensus 158 a~~l~~-~~~~l~~~g~~vlvgdp~R~~lpk~~ 189 (218) T COG3897 158 ADRLIP-WKDRLAEAGAAVLVGDPGRAYLPKKR 189 (218) T ss_pred HHHHHH-HHHHHHHCCCEEEEECCCCCCCCHHH T ss_conf 898899-99999857977997289977785544 |
|
| >COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=95.18 E-value=0.15 Score=28.32 Aligned_cols=102 Identities=16% Similarity=0.163 Sum_probs=65.4 Q ss_pred CCCCCEEEECCCCCHHHHHHHHHCCCCEEEEECCHHHHHHHHH------------HCCCCCHHHH-CCCC--CCCCHHHH Q ss_conf 8987099985998589999986269708997200113577531------------1001200110-1433--35222666 Q gi|254780322|r 45 QTFENALELHGITGIVGYTCMETKKIHRMIRAEISTEFSTLKR------------EVISCPLEEI-PSIS--QSVDLILS 109 (273) Q Consensus 45 ~~~~~vLdlGcGtG~~~~~l~~~~~~~~v~~~D~s~~~~~~~~------------~~~~~d~e~l-~~~~--~sfDli~s 109 (273) T Consensus 42 i~g~~~LDlFAGSGaLGlEAlSRGA-~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~~L~~~~~~~~FDlVfl 120 (187) T COG0742 42 IEGARVLDLFAGSGALGLEALSRGA-ARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALRALKQLGTREPFDLVFL 120 (187) T ss_pred CCCCEEEEECCCCCHHHHHHHHCCC-CEEEEEECCHHHHHHHHHHHHHHCCCCCEEEEEECHHHHHHHCCCCCCCCEEEE T ss_conf 5798899946876476899985788-569999659899999999999848761259984008999872277885128996 Q ss_pred HHHHHC-CCCHHHHHHH--HHHHHCCCCEEEEEECCCCCCH Q ss_conf 667422-2346999999--9998187870898406867633 Q gi|254780322|r 110 PLNLHI-INDTLEMFSK--INHMLKPGGMFLAAIPGIGTLH 147 (273) Q Consensus 110 ~~~l~w-~~d~~~~l~~--~~r~LkpgG~~~~s~~~~~~~~ 147 (273) T Consensus 121 DPPy~~~l~~~~~~~~~~~~~~~L~~~~~iv~E~~~~~~~~ 161 (187) T COG0742 121 DPPYAKGLLDKELALLLLEENGWLKPGALIVVEHDKDVELP 161 (187) T ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCC T ss_conf 89975360668999988876587788968999827877756 |
|
| >pfam07091 FmrO Ribosomal RNA methyltransferase (FmrO) | Back alignment and domain information |
|---|
Probab=95.14 E-value=0.028 Score=32.66 Aligned_cols=72 Identities=14% Similarity=0.046 Sum_probs=46.9 Q ss_pred CCCCCCEEEECCCCCHHHHHHHHHCCCCEEEEECCHHHHHHHHHHC----------CCCCHHHHCCCCCCCCHHHHHHHH Q ss_conf 6898709998599858999998626970899720011357753110----------012001101433352226666674 Q gi|254780322|r 44 NQTFENALELHGITGIVGYTCMETKKIHRMIRAEISTEFSTLKREV----------ISCPLEEIPSISQSVDLILSPLNL 113 (273) Q Consensus 44 ~~~~~~vLdlGcGtG~~~~~l~~~~~~~~v~~~D~s~~~~~~~~~~----------~~~d~e~l~~~~~sfDli~s~~~l 113 (273) T Consensus 100 ~~~p~sVlDlaCGlNPLa~pwm~~~~~~~Y~a~DId~~~i~fi~~~l~~l~v~~~~~~~Dl~~~~-p~~~~DvaLllK~l 178 (248) T pfam07091 100 LPPPRSVLDLACGLNPLAVPWMPLAPDATYHAYDIDRALIEFIRAFLALLGVPGEVRVRDLLTDP-PAEPADVALLLKTL 178 (248) T ss_pred CCCCCEEEEECCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCCEEEEEECCCC-CCCCCCCHHHHHHH T ss_conf 89986442000268830142336899867999707778999999999862987637987610479-98873400475527 Q ss_pred HCC Q ss_conf 222 Q gi|254780322|r 114 HII 116 (273) Q Consensus 114 ~w~ 116 (273) T Consensus 179 p~L 181 (248) T pfam07091 179 PLL 181 (248) T ss_pred HHH T ss_conf 789 |
This family consists of several bacterial ribosomal RNA methyltransferase (aminoglycoside-resistance methyltransferase) proteins. |
| >pfam03141 DUF248 Putative methyltransferase | Back alignment and domain information |
|---|
Probab=94.90 E-value=0.068 Score=30.35 Aligned_cols=94 Identities=11% Similarity=0.233 Sum_probs=59.0 Q ss_pred CCCCCEEEECCCCCHHHHHHHHHCC-CCEEEEECCHHHHHHHH-HHCCCCC----HHHHCCCCCCCCHHHHHHHHHCC-- Q ss_conf 8987099985998589999986269-70899720011357753-1100120----01101433352226666674222-- Q gi|254780322|r 45 QTFENALELHGITGIVGYTCMETKK-IHRMIRAEISTEFSTLK-REVISCP----LEEIPSISQSVDLILSPLNLHII-- 116 (273) Q Consensus 45 ~~~~~vLdlGcGtG~~~~~l~~~~~-~~~v~~~D~s~~~~~~~-~~~~~~d----~e~l~~~~~sfDli~s~~~l~w~-- 116 (273) T Consensus 364 ~~~RNVMDMnA~~GGFAAAL~~~~vWVMNVVP~~-~~nTL~vIydRGLiG~yHDWCE~FsTYPRTYDLlHA~~lfS~~~~ 442 (506) T pfam03141 364 GRVRNVMDMNAGFGGFAAALIDDPVWVMNVVPVD-SPDTLPVIYDRGLIGIYHDWCEPFSTYPRTYDLLHADHLFSLYKK 442 (506) T ss_pred CCEEEEEECCCCCCHHHHHHCCCCEEEEEECCCC-CCCCCCEEEECCCCCEEECCCCCCCCCCCCHHHHHHHHHHHHHCC T ss_conf 7601222124442158898637980499835589-998754587544210100224557888850777735323477617 Q ss_pred -CCHHHHHHHHHHHHCCCCEEEEE Q ss_conf -34699999999981878708984 Q gi|254780322|r 117 -NDTLEMFSKINHMLKPGGMFLAA 139 (273) Q Consensus 117 -~d~~~~l~~~~r~LkpgG~~~~s 139 (273) T Consensus 443 rC~~~dillEMDRILRP~G~vIiR 466 (506) T pfam03141 443 RCNLEDILLEMDRILRPGGAVIIR 466 (506) T ss_pred CCCHHHHHHHHHHHCCCCCEEEEE T ss_conf 865899998887600688149994 |
Members of this family of hypothetical plant proteins are probably methyltransferases: several of the aligned sequences either match the methyltransferase profile, or contain a SAM-binding motif. A protein from Arabidopsis thaliana contains both. Several family members are described as ankyrin like. |
| >PRK07502 cyclohexadienyl dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=94.86 E-value=0.057 Score=30.81 Aligned_cols=89 Identities=15% Similarity=0.094 Sum_probs=62.1 Q ss_pred CCCCCEEEECCC--CCHHHHHHHHHCCCCEEEEECCHHHHHHHHHHCCCCCH--HHHCCCCCCCCHHHHHHHHHCCCCHH Q ss_conf 898709998599--85899999862697089972001135775311001200--11014333522266666742223469 Q gi|254780322|r 45 QTFENALELHGI--TGIVGYTCMETKKIHRMIRAEISTEFSTLKREVISCPL--EEIPSISQSVDLILSPLNLHIINDTL 120 (273) Q Consensus 45 ~~~~~vLdlGcG--tG~~~~~l~~~~~~~~v~~~D~s~~~~~~~~~~~~~d~--e~l~~~~~sfDli~s~~~l~w~~d~~ 120 (273) T Consensus 4 ~~f~~I~IiGlGLIGgSlA~alk~~~~~~~I~g~d~~~~~l~~A~~~g~id~~~~~~~e~~~~~DlIilatPv~~~---~ 80 (307) T PRK07502 4 PLFDRVALIGLGLIGSSLARAIRRQGLAGEIVGAARSAETRARARELGLGDRVTTSAAEAVKGADLVILCVPVGAS---G 80 (307) T ss_pred CCCCEEEEEEECHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHCCCCCHHCCCHHHHHCCCCEEEEECCHHHH---H T ss_conf 6456689992787999999999854998579998499999999998699751127776640458979991789999---9 Q ss_pred HHHHHHHHHHCCCCEE Q ss_conf 9999999981878708 Q gi|254780322|r 121 EMFSKINHMLKPGGMF 136 (273) Q Consensus 121 ~~l~~~~r~LkpgG~~ 136 (273) T Consensus 81 ~vl~~l~~~l~~~~iv 96 (307) T PRK07502 81 AVAAEIAPHLKPGAIV 96 (307) T ss_pred HHHHHHHHHCCCCCEE T ss_conf 9999998555899689 |
|
| >KOG1122 consensus | Back alignment and domain information |
|---|
Probab=94.82 E-value=0.11 Score=29.23 Aligned_cols=97 Identities=16% Similarity=0.125 Sum_probs=62.6 Q ss_pred CCCCCCCEEEECCCCCHHHHHHHHH-CCCCEEEEECCHHHHHHHHH-----------HCCCCCHHHHC---CCCCCCCHH Q ss_conf 3689870999859985899999862-69708997200113577531-----------10012001101---433352226 Q gi|254780322|r 43 INQTFENALELHGITGIVGYTCMET-KKIHRMIRAEISTEFSTLKR-----------EVISCPLEEIP---SISQSVDLI 107 (273) Q Consensus 43 ~~~~~~~vLdlGcGtG~~~~~l~~~-~~~~~v~~~D~s~~~~~~~~-----------~~~~~d~e~l~---~~~~sfDli 107 (273) T Consensus 238 ~Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv~ntiv~n~D~~ef~~~~~~~-~fDRV 316 (460) T KOG1122 238 DPQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGVTNTIVSNYDGREFPEKEFPG-SFDRV 316 (460) T ss_pred CCCCCCEECCHHCCCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCC-CCCEE T ss_conf 79988711212107995077899987277469961354377999998899748774489736763255333676-42314 Q ss_pred H-----HH-------HHHHCCCC----------HHHHHHHHHHHHCCCCEEEEEE Q ss_conf 6-----66-------67422234----------6999999999818787089840 Q gi|254780322|r 108 L-----SP-------LNLHIIND----------TLEMFSKINHMLKPGGMFLAAI 140 (273) Q Consensus 108 ~-----s~-------~~l~w~~d----------~~~~l~~~~r~LkpgG~~~~s~ 140 (273) T Consensus 317 LLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYST 371 (460) T KOG1122 317 LLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYST 371 (460) T ss_pred EECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEE T ss_conf 5348777775554551013301299998727999999999873115770899985 |
|
| >PRK09422 alcohol dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.61 E-value=0.32 Score=26.44 Aligned_cols=88 Identities=14% Similarity=0.164 Sum_probs=54.1 Q ss_pred CCCCCEEEECCCC-CHHHHHHHHHCCCCEEEEECCHHHHHHHHHHC----CC--CCHH---H-HCCCCCCCC-HHHHHHH Q ss_conf 8987099985998-58999998626970899720011357753110----01--2001---1-014333522-2666667 Q gi|254780322|r 45 QTFENALELHGIT-GIVGYTCMETKKIHRMIRAEISTEFSTLKREV----IS--CPLE---E-IPSISQSVD-LILSPLN 112 (273) Q Consensus 45 ~~~~~vLdlGcGt-G~~~~~l~~~~~~~~v~~~D~s~~~~~~~~~~----~~--~d~e---~-l~~~~~sfD-li~s~~~ 112 (273) T Consensus 161 ~~G~~VlV~GaGgvG~~aiq~ak~~~g~~Vi~~~~~~~k~~~a~~lGad~vi~~~~~~~~~~~~~~~~gg~~~~v~~~~~ 240 (338) T PRK09422 161 KPGQWIAIYGAGGLGNLALQYAKNVFNAKVIAVDINDDKLALAKEVGADLTINSKRVEDVAKIIQEKTGGAHAAVVTAVA 240 (338) T ss_pred CCCCEEEEECCCHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHCCCCCEEEEECCC T ss_conf 99988999688689999999999808986999989999999999729989981887434999999950997769996787 Q ss_pred HHCCCCHHHHHHHHHHHHCCCCEEEEE Q ss_conf 422234699999999981878708984 Q gi|254780322|r 113 LHIINDTLEMFSKINHMLKPGGMFLAA 139 (273) Q Consensus 113 l~w~~d~~~~l~~~~r~LkpgG~~~~s 139 (273) T Consensus 241 -------~~~~~~~~~~l~~gG~~v~v 260 (338) T PRK09422 241 -------KAAFNQAVDAVRAGGRVVAV 260 (338) T ss_pred -------HHHHHHHHHHHHCCCEEEEE T ss_conf -------89999999981169999998 |
|
| >TIGR00478 tly hemolysin A; InterPro: IPR004538 Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture | Back alignment and domain information |
|---|
Probab=93.64 E-value=0.13 Score=28.80 Aligned_cols=97 Identities=12% Similarity=0.177 Sum_probs=63.7 Q ss_pred HHHHHHHHHHCCCCC--CCEEEECCCCCHHHHHHHHHCCCCEEEEECCHHHHHHHHHH-----------CCC-----CCH Q ss_conf 999997898636898--70999859985899999862697089972001135775311-----------001-----200 Q gi|254780322|r 33 AKEIAFRLNMINQTF--ENALELHGITGIVGYTCMETKKIHRMIRAEISTEFSTLKRE-----------VIS-----CPL 94 (273) Q Consensus 33 a~~l~~~l~~~~~~~--~~vLdlGcGtG~~~~~l~~~~~~~~v~~~D~s~~~~~~~~~-----------~~~-----~d~ 94 (273) T Consensus 62 G~KL~~~L~~F~~~vk~ki~lD~GsS~GGFtd~aL~~GA-k~VY~vDVG~~ql~~kLR~D~Rv~~~eR~N~rGy~T~~d~ 140 (240) T TIGR00478 62 GEKLKEALEEFEVDVKNKIVLDVGSSTGGFTDCALQKGA-KEVYGVDVGYNQLAEKLRQDERVKVLERTNIRGYVTPADI 140 (240) T ss_pred HHHHHHHCCCCCEEECCEEEEEECCCCCHHHHHHHHCCC-CEEEEEEECCHHHHHHCCCCCEEEEEECCCCCCCCCHHHH T ss_conf 589998535433133786899705673048999987058-4677786032133432363662689645787444665654 Q ss_pred H-HHCCCC-CCCCHHHHHHHHHCCCCHHHHHHHHHHHHCCCCEEEE Q ss_conf 1-101433-3522266666742223469999999998187870898 Q gi|254780322|r 95 E-EIPSIS-QSVDLILSPLNLHIINDTLEMFSKINHMLKPGGMFLA 138 (273) Q Consensus 95 e-~l~~~~-~sfDli~s~~~l~w~~d~~~~l~~~~r~LkpgG~~~~ 138 (273) T Consensus 141 ~~~qP~P~lA~~DvSFiS--------l~~il~~L~~lL~P~~~~~~ 178 (240) T TIGR00478 141 VKDQPMPDLAVVDVSFIS--------LISILPELLLLLNPDNDLLL 178 (240) T ss_pred HCCCCCCCHHHHHHHHHH--------HHHHHHHHHHHHCCCCEEEE T ss_conf 078889731444457887--------99999988875088960788 |
The mechanism of action is not well defined. Hemolysin A is induced by sodium ribonucleate, and is produced by pathogenic bacterial strains. Hemolysin A from Treponema hyodysenteriae causes swine dysentry.; GO: 0003723 RNA binding, 0019836 hemolysis by symbiont of host red blood cells. |
| >KOG1562 consensus | Back alignment and domain information |
|---|
Probab=92.95 E-value=0.13 Score=28.66 Aligned_cols=105 Identities=14% Similarity=0.132 Sum_probs=69.0 Q ss_pred HHHHHHHHCCC-CCCCEEEECCCCCHHHHHHHHHCCCCEEEEECCHHHHHHHHHHC---------------CCCCHHHH- Q ss_conf 99978986368-98709998599858999998626970899720011357753110---------------01200110- Q gi|254780322|r 35 EIAFRLNMINQ-TFENALELHGITGIVGYTCMETKKIHRMIRAEISTEFSTLKREV---------------ISCPLEEI- 97 (273) Q Consensus 35 ~l~~~l~~~~~-~~~~vLdlGcGtG~~~~~l~~~~~~~~v~~~D~s~~~~~~~~~~---------------~~~d~e~l- 97 (273) T Consensus 109 emi~~l~l~s~~npkkvlVVgggDggvlrevikH~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl 188 (337) T KOG1562 109 EMIAHLALCSHPNPKKVLVVGGGDGGVLREVIKHKSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFL 188 (337) T ss_pred HHHHCCCCCCCCCCCEEEEEECCCCCCEEEEECCCCCCCEEEEHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCHHHHH T ss_conf 43332634457898747999448841301131034601067543367899999987388753678971489955689999 Q ss_pred C-CCCCCCCHHHHHHHHHCCCCH----HHHHHHHHHHHCCCCEEEEE Q ss_conf 1-433352226666674222346----99999999981878708984 Q gi|254780322|r 98 P-SISQSVDLILSPLNLHIINDT----LEMFSKINHMLKPGGMFLAA 139 (273) Q Consensus 98 ~-~~~~sfDli~s~~~l~w~~d~----~~~l~~~~r~LkpgG~~~~s 139 (273) T Consensus 189 ~~~~~~~~dVii~dssdpvgpa~~lf~~~~~~~v~~aLk~dgv~~~q 235 (337) T KOG1562 189 EDLKENPFDVIITDSSDPVGPACALFQKPYFGLVLDALKGDGVVCTQ 235 (337) T ss_pred HHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEE T ss_conf 87036974189971677675588988888999999851799279973 |
|
| >PRK11727 putative SAM-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=92.95 E-value=0.05 Score=31.14 Aligned_cols=70 Identities=14% Similarity=0.087 Sum_probs=46.5 Q ss_pred CCEEEECCCCCHHHHHHHHHCCCCEEEEECCHHHHHHHHHHCCCCC--------------HHH----HCCCCCCCCHHHH Q ss_conf 7099985998589999986269708997200113577531100120--------------011----0143335222666 Q gi|254780322|r 48 ENALELHGITGIVGYTCMETKKIHRMIRAEISTEFSTLKREVISCP--------------LEE----IPSISQSVDLILS 109 (273) Q Consensus 48 ~~vLdlGcGtG~~~~~l~~~~~~~~v~~~D~s~~~~~~~~~~~~~d--------------~e~----l~~~~~sfDli~s 109 (273) T Consensus 119 v~gLDIGtGAncIYPLLG~~~ygW~fvgtDId~~sl~~A~~~v~~N~~L~~~I~lr~q~~~~~If~gii~~~e~fdftmC 198 (326) T PRK11727 119 VRVLDIGVGANCIYPIIGVQEYGWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKGIIHKNERFDLTLC 198 (326) T ss_pred CEEEECCCCCCEEEEECCCEECCCEEEEECCCHHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHCCCCCCCCEEEEEEC T ss_conf 23675056743112101430017637996179899999999998482010527999627867653245887665777851 Q ss_pred HHHHHCCC Q ss_conf 66742223 Q gi|254780322|r 110 PLNLHIIN 117 (273) Q Consensus 110 ~~~l~w~~ 117 (273) T Consensus 199 NPPF~~S~ 206 (326) T PRK11727 199 NPPFHASA 206 (326) T ss_pred CCCCCCCH T ss_conf 89876789 |
|
| >COG4301 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=92.90 E-value=0.67 Score=24.59 Aligned_cols=94 Identities=15% Similarity=0.206 Sum_probs=59.6 Q ss_pred CCCEEEECCCCCHHHHHHHHHCC----CCEEEEECCHHHHHHHHHH------------CCCCCHH----HHCC-CCCCCC Q ss_conf 87099985998589999986269----7089972001135775311------------0012001----1014-333522 Q gi|254780322|r 47 FENALELHGITGIVGYTCMETKK----IHRMIRAEISTEFSTLKRE------------VISCPLE----EIPS-ISQSVD 105 (273) Q Consensus 47 ~~~vLdlGcGtG~~~~~l~~~~~----~~~v~~~D~s~~~~~~~~~------------~~~~d~e----~l~~-~~~sfD 105 (273) T Consensus 79 ~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~~l~v~~l~~~~~~~La~~~~~~~Rl~~ 158 (321) T COG4301 79 ACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREYPGLEVNALCGDYELALAELPRGGRRLFV 158 (321) T ss_pred CCEEEEECCCCCHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHCCCCCCEEEEE T ss_conf 65489716896288999999752137740355402228999989999998679976763125688887515688728999 Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHCCCCEEEEEE Q ss_conf 26666674222346999999999818787089840 Q gi|254780322|r 106 LILSPLNLHIINDTLEMFSKINHMLKPGGMFLAAI 140 (273) Q Consensus 106 li~s~~~l~w~~d~~~~l~~~~r~LkpgG~~~~s~ 140 (273) T Consensus 159 flGStlGN~tp~e~~~Fl~~l~~a~~pGd~~LlGv 193 (321) T COG4301 159 FLGSTLGNLTPGECAVFLTQLRGALRPGDYFLLGV 193 (321) T ss_pred EECCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEEC T ss_conf 83653368886789999999984289766699812 |
|
| >KOG2915 consensus | Back alignment and domain information |
|---|
Probab=92.53 E-value=0.51 Score=25.28 Aligned_cols=89 Identities=13% Similarity=0.013 Sum_probs=60.8 Q ss_pred CCCCCEEEECCCCCHHHHHHHHH-CCCCEEEEECCHHHHHHHHHHC------------CCCCHHHHCC--CCCCCCHHHH Q ss_conf 89870999859985899999862-6970899720011357753110------------0120011014--3335222666 Q gi|254780322|r 45 QTFENALELHGITGIVGYTCMET-KKIHRMIRAEISTEFSTLKREV------------ISCPLEEIPS--ISQSVDLILS 109 (273) Q Consensus 45 ~~~~~vLdlGcGtG~~~~~l~~~-~~~~~v~~~D~s~~~~~~~~~~------------~~~d~e~l~~--~~~sfDli~s 109 (273) T Consensus 104 ~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc~~GF~~ks~~aDaVFL 183 (314) T KOG2915 104 RPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVCGSGFLIKSLKADAVFL 183 (314) T ss_pred CCCCEEEECCCCCCHHHHHHHHHHCCCCCEEEEEECHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCCCEEEE T ss_conf 99978986378863488999986376762699983287899999999973778634899964156773531342356997 Q ss_pred HHHHHCCCCHHHHHHHHHHHHCCCCEEEE Q ss_conf 66742223469999999998187870898 Q gi|254780322|r 110 PLNLHIINDTLEMFSKINHMLKPGGMFLA 138 (273) Q Consensus 110 ~~~l~w~~d~~~~l~~~~r~LkpgG~~~~ 138 (273) T Consensus 184 -----DlPaPw~AiPha~~~lk~~g~r~c 207 (314) T KOG2915 184 -----DLPAPWEAIPHAAKILKDEGGRLC 207 (314) T ss_pred -----CCCCHHHHHHHHHHHHHHCCCEEE T ss_conf -----589805522336777540682599 |
|
| >TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase; InterPro: IPR011023 This domain is found in archaeal, bacterial and eukaryotic proteins | Back alignment and domain information |
|---|
Probab=91.63 E-value=0.7 Score=24.47 Aligned_cols=95 Identities=20% Similarity=0.220 Sum_probs=61.4 Q ss_pred CCCCEEEECCCCCHHHHHHHHH-CCCCEEEEECCHHHHHH---HHH--------HCCCCCHHHHCCCCCC----CCHHH- Q ss_conf 9870999859985899999862-69708997200113577---531--------1001200110143335----22266- Q gi|254780322|r 46 TFENALELHGITGIVGYTCMET-KKIHRMIRAEISTEFST---LKR--------EVISCPLEEIPSISQS----VDLIL- 108 (273) Q Consensus 46 ~~~~vLdlGcGtG~~~~~l~~~-~~~~~v~~~D~s~~~~~---~~~--------~~~~~d~e~l~~~~~s----fDli~- 108 (273) T Consensus 77 ~~~~vlD~AAaPGgKTT~is~~m~N~G~i~Ane~~ksR~k~L~~NI~R~G~~n~~v~~~DgR~f~~~~~~~eifFD~iLL 156 (284) T TIGR00446 77 EKERVLDMAAAPGGKTTQISALMKNEGAIVANEVSKSRTKVLIANINRMGVLNVAVINVDGRKFGAVVLKMEIFFDRILL 156 (284) T ss_pred CCCEEEEEECCCCCHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHEEEEEEECCCCHHHHHHCCCEEEEEEEEE T ss_conf 88879997408896489999986588518997376341066786555621003332413763001231443034321452 Q ss_pred --------------------HHHHHHCCCCHH-HHHHHHHHHHCC----CCEEEEEE Q ss_conf --------------------666742223469-999999998187----87089840 Q gi|254780322|r 109 --------------------SPLNLHIINDTL-EMFSKINHMLKP----GGMFLAAI 140 (273) Q Consensus 109 --------------------s~~~l~w~~d~~-~~l~~~~r~Lkp----gG~~~~s~ 140 (273) T Consensus 157 DAPCSG~GvI~KD~~~~~~~~~eD~~~~s~lQkeL~~~A~d~lk~nskhGGv~VYST 213 (284) T TIGR00446 157 DAPCSGEGVIRKDPSRKKNRSEEDILEISKLQKELILAAFDALKPNSKHGGVLVYST 213 (284) T ss_pred CCCCCCCCEEEECHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEC T ss_conf 578798833765723311477245776467679999999875044566688889850 |
In the archaea and bacteria, they are primarily restricted to the euryarchaeota and proteobacteria respectively; where they are either described as either nucleolar protein or tRNA/rRNA cytosine-C5-methylase. They all have the S-adenosyl methionine (SAM) binding domain and are related to bacterial Fmu (16S rRNA m5C 967 methyltransferase) where the structure of the methyl transferase domain has been determined . In the eukaryota, the majority are annotated as being 'nucleolar protein'. None of the eukaryotic members in this family have a the SAM binding signature. Despite this, the yeast Nop2p is a probable RNA m(5)C methyltransferase, essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis ; localised to the nucleolus and is essential for viability . Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing . There is substantial identity between Nop2p and human p120 (NOL1), which is also called the proliferation-associated nucleolar antigen , . . |