HHsearch alignment for GI: 254780322 and conserved domain: COG0030

>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis].
Probab=97.67  E-value=7.8e-05  Score=47.53  Aligned_cols=84  Identities=20%  Similarity=0.177  Sum_probs=56.7

Q ss_pred             HHHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHCCCCEEEEECCHHHHHHHHH---------HCCCCCHHHHCCCC
Q ss_conf             999999978986368987099985998589999986269708997200113577531---------10012001101433
Q gi|254780322|r   31 RVAKEIAFRLNMINQTFENALELHGITGIVGYTCMETKKIHRMIRAEISTEFSTLKR---------EVISCPLEEIPSIS  101 (273)
Q Consensus        31 ~~a~~l~~~l~~~~~~~~~vLdlGcGtG~~~~~l~~~~~~~~v~~~D~s~~~~~~~~---------~~~~~d~e~l~~~~  101 (273)
T Consensus        17 ~v~~kIv~~a~-~~-~~d~VlEIGpG~GaLT~~Ll~~~~--~v~aiEiD~~l~~~L~~~~~~~~n~~vi~~DaLk~d~~~   92 (259)
T COG0030          17 NVIDKIVEAAN-IS-PGDNVLEIGPGLGALTEPLLERAA--RVTAIEIDRRLAEVLKERFAPYDNLTVINGDALKFDFPS   92 (259)
T ss_pred             HHHHHHHHHCC-CC-CCCEEEEECCCCCHHHHHHHHHCC--EEEEEEECHHHHHHHHHHHCCCCCEEEEECCHHCCCCHH
T ss_conf             79999998557-89-998699978987788999996069--579999688999999975065665599947242475135


Q ss_pred             C-CCCHHHHHHHHHCCCC
Q ss_conf             3-5222666667422234
Q gi|254780322|r  102 Q-SVDLILSPLNLHIIND  118 (273)
Q Consensus       102 ~-sfDli~s~~~l~w~~d  118 (273)
T Consensus        93 l~~~~~vVaNlPY~Issp  110 (259)
T COG0030          93 LAQPYKVVANLPYNISSP  110 (259)
T ss_pred             HCCCCEEEECCCCCCCHH
T ss_conf             157888998089765679