HHsearch alignment for GI: 254780322 and conserved domain: COG1041

>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair].
Probab=98.32  E-value=2.4e-06  Score=56.31  Aligned_cols=107  Identities=22%  Similarity=0.232  Sum_probs=78.7

Q ss_pred             HHHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHCCCCEEEEECCHHHHHHHHHH-----------CCCC-CHHHHC
Q ss_conf             9999999789863689870999859985899999862697089972001135775311-----------0012-001101
Q gi|254780322|r   31 RVAKEIAFRLNMINQTFENALELHGITGIVGYTCMETKKIHRMIRAEISTEFSTLKRE-----------VISC-PLEEIP   98 (273)
Q Consensus        31 ~~a~~l~~~l~~~~~~~~~vLdlGcGtG~~~~~l~~~~~~~~v~~~D~s~~~~~~~~~-----------~~~~-d~e~l~   98 (273)
T Consensus       184 ~lAR~mVN-La~v~-~G~~vlDPFcGTGgiLiEag--l~G~~viG~Did~~mv~gak~Nl~~y~i~~~~~~~~~Da~~lp  259 (347)
T COG1041         184 RLARAMVN-LARVK-RGELVLDPFCGTGGILIEAG--LMGARVIGSDIDERMVRGAKINLEYYGIEDYPVLKVLDATNLP  259 (347)
T ss_pred             HHHHHHHH-HHCCC-CCCEEECCCCCCCHHHHHHH--HCCCEEEECCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCC
T ss_conf             99999877-74164-69876457678348888366--4275676032379998556641566276761688730221277


Q ss_pred             CCCCCCCHHHHHHHHHCC--------CC-HHHHHHHHHHHHCCCCEEEEEEC
Q ss_conf             433352226666674222--------34-69999999998187870898406
Q gi|254780322|r   99 SISQSVDLILSPLNLHII--------ND-TLEMFSKINHMLKPGGMFLAAIP  141 (273)
Q Consensus        99 ~~~~sfDli~s~~~l~w~--------~d-~~~~l~~~~r~LkpgG~~~~s~~  141 (273)
T Consensus       260 l~~~~vdaIatDPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p  311 (347)
T COG1041         260 LRDNSVDAIATDPPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAP  311 (347)
T ss_pred             CCCCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECC
T ss_conf             8877423588469987100245552899999999999987304848999617