HHsearch alignment for GI: 254780322 and conserved domain: COG1041
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair].
Probab=98.32 E-value=2.4e-06 Score=56.31 Aligned_cols=107 Identities=22% Similarity=0.232 Sum_probs=78.7
Q ss_pred HHHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHCCCCEEEEECCHHHHHHHHHH-----------CCCC-CHHHHC
Q ss_conf 9999999789863689870999859985899999862697089972001135775311-----------0012-001101
Q gi|254780322|r 31 RVAKEIAFRLNMINQTFENALELHGITGIVGYTCMETKKIHRMIRAEISTEFSTLKRE-----------VISC-PLEEIP 98 (273)
Q Consensus 31 ~~a~~l~~~l~~~~~~~~~vLdlGcGtG~~~~~l~~~~~~~~v~~~D~s~~~~~~~~~-----------~~~~-d~e~l~ 98 (273)
T Consensus 184 ~lAR~mVN-La~v~-~G~~vlDPFcGTGgiLiEag--l~G~~viG~Did~~mv~gak~Nl~~y~i~~~~~~~~~Da~~lp 259 (347)
T COG1041 184 RLARAMVN-LARVK-RGELVLDPFCGTGGILIEAG--LMGARVIGSDIDERMVRGAKINLEYYGIEDYPVLKVLDATNLP 259 (347)
T ss_pred HHHHHHHH-HHCCC-CCCEEECCCCCCCHHHHHHH--HCCCEEEECCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCC
T ss_conf 99999877-74164-69876457678348888366--4275676032379998556641566276761688730221277
Q ss_pred CCCCCCCHHHHHHHHHCC--------CC-HHHHHHHHHHHHCCCCEEEEEEC
Q ss_conf 433352226666674222--------34-69999999998187870898406
Q gi|254780322|r 99 SISQSVDLILSPLNLHII--------ND-TLEMFSKINHMLKPGGMFLAAIP 141 (273)
Q Consensus 99 ~~~~sfDli~s~~~l~w~--------~d-~~~~l~~~~r~LkpgG~~~~s~~ 141 (273)
T Consensus 260 l~~~~vdaIatDPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p 311 (347)
T COG1041 260 LRDNSVDAIATDPPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAP 311 (347)
T ss_pred CCCCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECC
T ss_conf 8877423588469987100245552899999999999987304848999617