HHsearch alignment for GI: 254780322 and conserved domain: COG5459
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis].
Probab=96.89 E-value=0.0045 Score=37.26 Aligned_cols=106 Identities=13% Similarity=0.078 Sum_probs=65.2
Q ss_pred CCCCEEEECCCCCHHHHHHHHHCCCC-EEEEECCHHHHHHHHH---------------HCCCCCHHHHCCCCCCCCHHHH
Q ss_conf 98709998599858999998626970-8997200113577531---------------1001200110143335222666
Q gi|254780322|r 46 TFENALELHGITGIVGYTCMETKKIH-RMIRAEISTEFSTLKR---------------EVISCPLEEIPSISQSVDLILS 109 (273)
Q Consensus 46 ~~~~vLdlGcGtG~~~~~l~~~~~~~-~v~~~D~s~~~~~~~~---------------~~~~~d~e~l~~~~~sfDli~s 109 (273)
T Consensus 113 apqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~t~~td~r~s~vt~dRl~lp~-ad~ytl~i~ 191 (484)
T COG5459 113 APQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVSTEKTDWRASDVTEDRLSLPA-ADLYTLAIV 191 (484)
T ss_pred CCCHHHCCCCCCCHHHHHHCCCCCCCHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCHHCCCCCC-CCEEEHHHH
T ss_conf 8610200377875212332033788022123404899999999998604533477778865021047883-223633343
Q ss_pred HHH-HHCCCC--HHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHH
Q ss_conf 667-422234--6999999999818787089840686763347788
Q gi|254780322|r 110 PLN-LHIIND--TLEMFSKINHMLKPGGMFLAAIPGIGTLHELRKA 152 (273)
Q Consensus 110 ~~~-l~w~~d--~~~~l~~~~r~LkpgG~~~~s~~~~~~~~el~~~ 152 (273)
T Consensus 192 ~~eLl~d~~ek~i~~~ie~lw~l~~~gg~lVivErGtp~Gf~~I~r 237 (484)
T COG5459 192 LDELLPDGNEKPIQVNIERLWNLLAPGGHLVIVERGTPAGFERILR 237 (484)
T ss_pred HHHHCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHH
T ss_conf 5444435574318899999998606897499971798236999999