HHsearch alignment for GI: 254780322 and conserved domain: PRK00274

>PRK00274 ksgA dimethyladenosine transferase; Reviewed.
Probab=97.46  E-value=0.00028  Score=44.26  Aligned_cols=88  Identities=15%  Similarity=0.210  Sum_probs=57.2

Q ss_pred             HHHHHHHHHHHCCCCCCHHHHH-HHHHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHCCCCEEEEECCHHHHHHHH
Q ss_conf             9999857766317462206899-999999997898636898709998599858999998626970899720011357753
Q gi|254780322|r    8 QLINRNRLRSFRQKDFSVYFLL-DRVAKEIAFRLNMINQTFENALELHGITGIVGYTCMETKKIHRMIRAEISTEFSTLK   86 (273)
Q Consensus         8 ~~i~~~~~ra~~~~~~~~~~l~-~~~a~~l~~~l~~~~~~~~~vLdlGcGtG~~~~~l~~~~~~~~v~~~D~s~~~~~~~   86 (273)
T Consensus         4 ~~l~~~~~~~kK~lG--QnFL~d~~ii~kIv~~~-~~~-~~d~VlEIGpG~G~LT~~Ll~~~~--~v~aiEiD~~l~~~L   77 (267)
T PRK00274          4 ELLEHYGHRAKKSLG--QNFLIDENIIDKIVRAA-DLQ-PGDRVLEIGPGLGALTEPLLERAA--KVTAIEIDRDLAPIL   77 (267)
T ss_pred             HHHHHCCCCCCCCCC--CCCCCCHHHHHHHHHHC-CCC-CCCEEEEECCCCCHHHHHHHHHCC--CEEEEECCHHHHHHH
T ss_conf             999876999887778--22148989999999960-899-999079963888889999996268--058863688999998


Q ss_pred             H-----HCCCCCHHHHCCCC
Q ss_conf             1-----10012001101433
Q gi|254780322|r   87 R-----EVISCPLEEIPSIS  101 (273)
Q Consensus        87 ~-----~~~~~d~e~l~~~~  101 (273)
T Consensus        78 ~~~~~~~ii~~D~L~~~~~~   97 (267)
T PRK00274         78 RETDNLTIIEGDALKVDLEE   97 (267)
T ss_pred             HHCCCEEEEECHHHHCCHHH
T ss_conf             50478699965066478677