HHsearch alignment for GI: 254780322 and conserved domain: PRK03522
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed.
Probab=97.42 E-value=0.0017 Score=39.66 Aligned_cols=59 Identities=17% Similarity=0.186 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHH-HCC-CCCCCEEEECCCCCHHHHHHHHHCCCCEEEEECCHHHHHHHHHHCC
Q ss_conf 999999997898-636-8987099985998589999986269708997200113577531100
Q gi|254780322|r 30 DRVAKEIAFRLN-MIN-QTFENALELHGITGIVGYTCMETKKIHRMIRAEISTEFSTLKREVI 90 (273)
Q Consensus 30 ~~~a~~l~~~l~-~~~-~~~~~vLdlGcGtG~~~~~l~~~~~~~~v~~~D~s~~~~~~~~~~~ 90 (273)
T Consensus 215 ~~~~~~L~~~~~~~~~~~~~~~vlDlycG~G~~sl~lA~~~--~~V~gvE~~~~av~~A~~na 275 (375)
T PRK03522 215 PAVAAQLYATARDWVRELPPKSMWDLFCGVGGFGLHCATPD--MQLTGIEISAEAIACAKQSA 275 (375)
T ss_pred HHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHCC--CEEEEEEECHHHHHHHHHHH
T ss_conf 99999999999998631589789996578538889876417--88999984599999999999