HHsearch alignment for GI: 254780322 and conserved domain: PRK11188

>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional.
Probab=99.15  E-value=3.4e-10  Score=78.81  Aligned_cols=118  Identities=14%  Similarity=0.148  Sum_probs=89.0

Q ss_pred             HHHHHHHCCCCCCCEEEECCCCCHHHHHHHHH-CCCCEEEEECCHHHHHHHHHHCCCCCHHHHC--------CCCCCCCH
Q ss_conf             99789863689870999859985899999862-6970899720011357753110012001101--------43335222
Q gi|254780322|r   36 IAFRLNMINQTFENALELHGITGIVGYTCMET-KKIHRMIRAEISTEFSTLKREVISCPLEEIP--------SISQSVDL  106 (273)
Q Consensus        36 l~~~l~~~~~~~~~vLdlGcGtG~~~~~l~~~-~~~~~v~~~D~s~~~~~~~~~~~~~d~e~l~--------~~~~sfDl  106 (273)
T Consensus        42 Id~K~~l~-~~~~~VlDLGaAPG~WsQva~~~~~~~g~VigVDl~~~~pi~gv~~i~gDi~~~~~~~~i~~~~~~~~~Dv  120 (209)
T PRK11188         42 IQQSDKLF-KPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPMDPIVGVDFLQGDFRDELVLKALLERVGDSKVDV  120 (209)
T ss_pred             HHHHHCCC-CCCCEEEEECCCCCHHHHHHHHHCCCCCEEEEEECCCCCCCCCCEEECCCCCCHHHHHHHHHHHCCCCCCE
T ss_conf             99885645-78998998068997578999997399973999865304537896764034458899999999858987308


Q ss_pred             HHHHHHHHCC----CCH-------HHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHH
Q ss_conf             6666674222----346-------99999999981878708984068676334778899
Q gi|254780322|r  107 ILSPLNLHII----NDT-------LEMFSKINHMLKPGGMFLAAIPGIGTLHELRKALL  154 (273)
Q Consensus       107 i~s~~~l~w~----~d~-------~~~l~~~~r~LkpgG~~~~s~~~~~~~~el~~~~~  154 (273)
T Consensus       121 VlSDmAPn~tG~~~~D~~~s~~L~~~al~~a~~~Lk~gG~fv~K~F~G~~~~~~~~~~k  179 (209)
T PRK11188        121 VMSDMAPNMSGTPAVDIPRAMYLVELALDMCRQVLAPGGSFVVKVFQGEGFDEYLREIR  179 (209)
T ss_pred             EECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCHHHHHHHHH
T ss_conf             96666656678703359999999999999999862679889999964879999999997