HHsearch alignment for GI: 254780322 and conserved domain: PRK11188
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional.
Probab=99.15 E-value=3.4e-10 Score=78.81 Aligned_cols=118 Identities=14% Similarity=0.148 Sum_probs=89.0
Q ss_pred HHHHHHHCCCCCCCEEEECCCCCHHHHHHHHH-CCCCEEEEECCHHHHHHHHHHCCCCCHHHHC--------CCCCCCCH
Q ss_conf 99789863689870999859985899999862-6970899720011357753110012001101--------43335222
Q gi|254780322|r 36 IAFRLNMINQTFENALELHGITGIVGYTCMET-KKIHRMIRAEISTEFSTLKREVISCPLEEIP--------SISQSVDL 106 (273)
Q Consensus 36 l~~~l~~~~~~~~~vLdlGcGtG~~~~~l~~~-~~~~~v~~~D~s~~~~~~~~~~~~~d~e~l~--------~~~~sfDl 106 (273)
T Consensus 42 Id~K~~l~-~~~~~VlDLGaAPG~WsQva~~~~~~~g~VigVDl~~~~pi~gv~~i~gDi~~~~~~~~i~~~~~~~~~Dv 120 (209)
T PRK11188 42 IQQSDKLF-KPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPMDPIVGVDFLQGDFRDELVLKALLERVGDSKVDV 120 (209)
T ss_pred HHHHHCCC-CCCCEEEEECCCCCHHHHHHHHHCCCCCEEEEEECCCCCCCCCCEEECCCCCCHHHHHHHHHHHCCCCCCE
T ss_conf 99885645-78998998068997578999997399973999865304537896764034458899999999858987308
Q ss_pred HHHHHHHHCC----CCH-------HHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHH
Q ss_conf 6666674222----346-------99999999981878708984068676334778899
Q gi|254780322|r 107 ILSPLNLHII----NDT-------LEMFSKINHMLKPGGMFLAAIPGIGTLHELRKALL 154 (273)
Q Consensus 107 i~s~~~l~w~----~d~-------~~~l~~~~r~LkpgG~~~~s~~~~~~~~el~~~~~ 154 (273)
T Consensus 121 VlSDmAPn~tG~~~~D~~~s~~L~~~al~~a~~~Lk~gG~fv~K~F~G~~~~~~~~~~k 179 (209)
T PRK11188 121 VMSDMAPNMSGTPAVDIPRAMYLVELALDMCRQVLAPGGSFVVKVFQGEGFDEYLREIR 179 (209)
T ss_pred EECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCHHHHHHHHH
T ss_conf 96666656678703359999999999999999862679889999964879999999997