HHsearch alignment for GI: 254780322 and conserved domain: PRK11783
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional.
Probab=97.29 E-value=0.00076 Score=41.76 Aligned_cols=68 Identities=16% Similarity=0.226 Sum_probs=34.4
Q ss_pred CEEEEECCHHHHHHHHHH------------CCCCCHHHHCC--CCCCCCHHHHHHH----HHCCCCHHHHHHHHHHHHCC
Q ss_conf 089972001135775311------------00120011014--3335222666667----42223469999999998187
Q gi|254780322|r 71 HRMIRAEISTEFSTLKRE------------VISCPLEEIPS--ISQSVDLILSPLN----LHIINDTLEMFSKINHMLKP 132 (273)
Q Consensus 71 ~~v~~~D~s~~~~~~~~~------------~~~~d~e~l~~--~~~sfDli~s~~~----l~w~~d~~~~l~~~~r~Lkp 132 (273)
T Consensus 261 ~~i~G~D~D~~ai~~Ar~Na~~AGv~~~I~f~~~d~~~l~~p~~~~~~Gliv~NPPYGERLge~~~L~~LY~~lG~~lK~ 340 (716)
T PRK11783 261 PKFYGSDIDPRVIQAARRNARRAGVEELITFEVKDVADLKNPLPKGPTGLVISNPPYGERLGEEPALIALYSQLGRRLKK 340 (716)
T ss_pred CCEEEEECCHHHHHHHHHHHHHCCCCCCCEEEECCHHHCCCCCCCCCCCEEEECCCHHCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 71899959989999999999981998862999567898579877789828996785220136614689999999999996
Q ss_pred --CCEEEE
Q ss_conf --870898
Q gi|254780322|r 133 --GGMFLA 138 (273)
Q Consensus 133 --gG~~~~ 138 (273)
T Consensus 341 ~f~GW~~~ 348 (716)
T PRK11783 341 QFGGWNAA 348 (716)
T ss_pred HCCCCEEE
T ss_conf 58998699