HHsearch alignment for GI: 254780322 and conserved domain: PRK13168
>PRK13168 rumA 23S rRNA 5-methyluridine methyltransferase; Reviewed.
Probab=96.93 E-value=0.00095 Score=41.18 Aligned_cols=58 Identities=16% Similarity=0.126 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHH-HCC-CCCCCEEEECCCCCHHHHHHHHHCCCCEEEEECCHHHHHHHHHHC
Q ss_conf 999999997898-636-898709998599858999998626970899720011357753110
Q gi|254780322|r 30 DRVAKEIAFRLN-MIN-QTFENALELHGITGIVGYTCMETKKIHRMIRAEISTEFSTLKREV 89 (273)
Q Consensus 30 ~~~a~~l~~~l~-~~~-~~~~~vLdlGcGtG~~~~~l~~~~~~~~v~~~D~s~~~~~~~~~~ 89 (273)
T Consensus 276 ~~~ae~L~~~a~~~l~~~~~~~VlDLYcGvGtfsl~LA~~~--~~V~gvE~~~~av~~A~~N 335 (440)
T PRK13168 276 AQVNQKMVARALEWLDPQPGDRVLDLFCGLGNFTLPLARQA--AEVVGVEGVPAMVERAREN 335 (440)
T ss_pred HHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCHHHHHCC--CEEEEEECCHHHHHHHHHH
T ss_conf 99999999999998526789889986238562111135306--7688760579999999999