HHsearch alignment for GI: 254780322 and conserved domain: PRK13168

>PRK13168 rumA 23S rRNA 5-methyluridine methyltransferase; Reviewed.
Probab=96.93  E-value=0.00095  Score=41.18  Aligned_cols=58  Identities=16%  Similarity=0.126  Sum_probs=41.5

Q ss_pred             HHHHHHHHHHHH-HCC-CCCCCEEEECCCCCHHHHHHHHHCCCCEEEEECCHHHHHHHHHHC
Q ss_conf             999999997898-636-898709998599858999998626970899720011357753110
Q gi|254780322|r   30 DRVAKEIAFRLN-MIN-QTFENALELHGITGIVGYTCMETKKIHRMIRAEISTEFSTLKREV   89 (273)
Q Consensus        30 ~~~a~~l~~~l~-~~~-~~~~~vLdlGcGtG~~~~~l~~~~~~~~v~~~D~s~~~~~~~~~~   89 (273)
T Consensus       276 ~~~ae~L~~~a~~~l~~~~~~~VlDLYcGvGtfsl~LA~~~--~~V~gvE~~~~av~~A~~N  335 (440)
T PRK13168        276 AQVNQKMVARALEWLDPQPGDRVLDLFCGLGNFTLPLARQA--AEVVGVEGVPAMVERAREN  335 (440)
T ss_pred             HHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCHHHHHCC--CEEEEEECCHHHHHHHHHH
T ss_conf             99999999999998526789889986238562111135306--7688760579999999999