HHsearch alignment for GI: 254780322 and conserved domain: PRK13341

>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed.
Probab=95.86  E-value=0.13  Score=28.78  Aligned_cols=207  Identities=15%  Similarity=0.065  Sum_probs=123.2

Q ss_pred             HHHHHHHH------HHHHHHHH-HCC-CCCCCEEEECCCCCHHHHHHHHHCCCCEEEEECCHHHHHHH---H--------
Q ss_conf             68999999------99997898-636-89870999859985899999862697089972001135775---3--------
Q gi|254780322|r   26 YFLLDRVA------KEIAFRLN-MIN-QTFENALELHGITGIVGYTCMETKKIHRMIRAEISTEFSTL---K--------   86 (273)
Q Consensus        26 ~~l~~~~a------~~l~~~l~-~~~-~~~~~vLdlGcGtG~~~~~l~~~~~~~~v~~~D~s~~~~~~---~--------   86 (273)
T Consensus       464 ~w~~r~~~~~~~~l~~~~~rl~~~~~~qr~~~vl~l~~~sll~~~~~l~~~peggv~~~~~~~~~~~rL~aQl~lLdpL~  543 (726)
T PRK13341        464 RWLQRQLGQEGERLRILRDRLWSGITWQRHDRVLNLANRSLLWALEPLRAVPEGGVTVLCESSDDIVRLEAQLDLLDPLG  543 (726)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCEEEEECCCCHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHCCHHC
T ss_conf             99999873143799999999843366563435998338512652677861899866998378889999999987468111


Q ss_pred             -HHCCCCCH---HHHCCCCCCCCHHHHHHHHHCCCCHH--HHHHHHHHHHCCCCEEEEEE--CCCCCCH----------H
Q ss_conf             -11001200---11014333522266666742223469--99999999818787089840--6867633----------4
Q gi|254780322|r   87 -REVISCPL---EEIPSISQSVDLILSPLNLHIINDTL--EMFSKINHMLKPGGMFLAAI--PGIGTLH----------E  148 (273)
Q Consensus        87 -~~~~~~d~---e~l~~~~~sfDli~s~~~l~w~~d~~--~~l~~~~r~LkpgG~~~~s~--~~~~~~~----------e  148 (273)
T Consensus       544 RP~Ll~~~~~~l~~L~-~~~~FE~IgGR~~~~~l~~~~~~~~~q~L~~~l~p~g~l~Ll~S~P~~Gpa~all~~~~~~~~  622 (726)
T PRK13341        544 RPVLLDAGLLALKYLP-ANLQFEWIGGRNGLDDLLYKADEELWQQLTEKLTPNGGLRLLISQPEAGPALALLLKAPVEDK  622 (726)
T ss_pred             CCCEEECCCHHHHHCC-CCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHCCCCCHHH
T ss_conf             9711216711465379-876424783332002342256999999999865998669986357764807887356940489


Q ss_pred             HHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEEEEEEEEECCCHHHHHHHHHHHCCHHHHCCCCCCCCC
Q ss_conf             77889987545426866421674599999999985089854677313688358989999999961551111055667999
Q gi|254780322|r  149 LRKALLKAETELTGGASPRVIPFMDIKSAGTLMEKSGFISPIIDQDTYTVYYKSMLHLMHDLRGMGMSNPLIRRSKTPPY  228 (273)
Q Consensus       149 l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~agf~~~~~~~~~~~~~~~~~~~l~~~lk~~g~~~~~~~~~~~~~~  228 (273)
T Consensus       623 ~l~~L~~aEe~wl~~-------~~~~~~Lqq~le~~gwsl~~e~W~e~lsL~i~~~Li~RWf~~g~~---Yr~~l~~~l~  692 (726)
T PRK13341        623 LLSALLEAEELWLKS-------QSMPALLQQQLEEAGWSLGIEEWTEELSLGVDSKLIKRWLAQGPD---YRQAVGTNLE  692 (726)
T ss_pred             HHHHHHHHHHHHHHC-------CCCHHHHHHHHHHCCCCCEEEEHHCCCCCCCCHHHHHHHHCCCCH---HHHHHHCCCC
T ss_conf             999999999999626-------888599999999748845351300156787886999988338964---9999853299


Q ss_pred             HHHHHHHHHHHHHHC
Q ss_conf             889999999999962
Q gi|254780322|r  229 KSLFKRASTIYTEEN  243 (273)
Q Consensus       229 k~~~~~~~~~y~~~~  243 (273)
T Consensus       693 ~~~i~~L~~~l~~~l  707 (726)
T PRK13341        693 EEVLCNLDELLTKIL  707 (726)
T ss_pred             HHHHHHHHHHHHHHH
T ss_conf             999999999999874