HHsearch alignment for GI: 254780322 and conserved domain: PRK13341
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed.
Probab=95.86 E-value=0.13 Score=28.78 Aligned_cols=207 Identities=15% Similarity=0.065 Sum_probs=123.2
Q ss_pred HHHHHHHH------HHHHHHHH-HCC-CCCCCEEEECCCCCHHHHHHHHHCCCCEEEEECCHHHHHHH---H--------
Q ss_conf 68999999------99997898-636-89870999859985899999862697089972001135775---3--------
Q gi|254780322|r 26 YFLLDRVA------KEIAFRLN-MIN-QTFENALELHGITGIVGYTCMETKKIHRMIRAEISTEFSTL---K-------- 86 (273)
Q Consensus 26 ~~l~~~~a------~~l~~~l~-~~~-~~~~~vLdlGcGtG~~~~~l~~~~~~~~v~~~D~s~~~~~~---~-------- 86 (273)
T Consensus 464 ~w~~r~~~~~~~~l~~~~~rl~~~~~~qr~~~vl~l~~~sll~~~~~l~~~peggv~~~~~~~~~~~rL~aQl~lLdpL~ 543 (726)
T PRK13341 464 RWLQRQLGQEGERLRILRDRLWSGITWQRHDRVLNLANRSLLWALEPLRAVPEGGVTVLCESSDDIVRLEAQLDLLDPLG 543 (726)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCEEEEECCCCHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHCCHHC
T ss_conf 99999873143799999999843366563435998338512652677861899866998378889999999987468111
Q ss_pred -HHCCCCCH---HHHCCCCCCCCHHHHHHHHHCCCCHH--HHHHHHHHHHCCCCEEEEEE--CCCCCCH----------H
Q ss_conf -11001200---11014333522266666742223469--99999999818787089840--6867633----------4
Q gi|254780322|r 87 -REVISCPL---EEIPSISQSVDLILSPLNLHIINDTL--EMFSKINHMLKPGGMFLAAI--PGIGTLH----------E 148 (273)
Q Consensus 87 -~~~~~~d~---e~l~~~~~sfDli~s~~~l~w~~d~~--~~l~~~~r~LkpgG~~~~s~--~~~~~~~----------e 148 (273)
T Consensus 544 RP~Ll~~~~~~l~~L~-~~~~FE~IgGR~~~~~l~~~~~~~~~q~L~~~l~p~g~l~Ll~S~P~~Gpa~all~~~~~~~~ 622 (726)
T PRK13341 544 RPVLLDAGLLALKYLP-ANLQFEWIGGRNGLDDLLYKADEELWQQLTEKLTPNGGLRLLISQPEAGPALALLLKAPVEDK 622 (726)
T ss_pred CCCEEECCCHHHHHCC-CCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHCCCCCHHH
T ss_conf 9711216711465379-876424783332002342256999999999865998669986357764807887356940489
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEEEEEEEEECCCHHHHHHHHHHHCCHHHHCCCCCCCCC
Q ss_conf 77889987545426866421674599999999985089854677313688358989999999961551111055667999
Q gi|254780322|r 149 LRKALLKAETELTGGASPRVIPFMDIKSAGTLMEKSGFISPIIDQDTYTVYYKSMLHLMHDLRGMGMSNPLIRRSKTPPY 228 (273)
Q Consensus 149 l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~agf~~~~~~~~~~~~~~~~~~~l~~~lk~~g~~~~~~~~~~~~~~ 228 (273)
T Consensus 623 ~l~~L~~aEe~wl~~-------~~~~~~Lqq~le~~gwsl~~e~W~e~lsL~i~~~Li~RWf~~g~~---Yr~~l~~~l~ 692 (726)
T PRK13341 623 LLSALLEAEELWLKS-------QSMPALLQQQLEEAGWSLGIEEWTEELSLGVDSKLIKRWLAQGPD---YRQAVGTNLE 692 (726)
T ss_pred HHHHHHHHHHHHHHC-------CCCHHHHHHHHHHCCCCCEEEEHHCCCCCCCCHHHHHHHHCCCCH---HHHHHHCCCC
T ss_conf 999999999999626-------888599999999748845351300156787886999988338964---9999853299
Q ss_pred HHHHHHHHHHHHHHC
Q ss_conf 889999999999962
Q gi|254780322|r 229 KSLFKRASTIYTEEN 243 (273)
Q Consensus 229 k~~~~~~~~~y~~~~ 243 (273)
T Consensus 693 ~~~i~~L~~~l~~~l 707 (726)
T PRK13341 693 EEVLCNLDELLTKIL 707 (726)
T ss_pred HHHHHHHHHHHHHHH
T ss_conf 999999999999874