HHsearch alignment for GI: 254780322 and conserved domain: TIGR00438
>TIGR00438 rrmJ ribosomal RNA large subunit methyltransferase J; InterPro: IPR004512 The ribosomal RNA large subunit methyltransferase J 2.1.1 from EC methylates the 23S rRNA. It specifically methylates the uridine in position 2552 of 23s rRNA in the 50S particle using S-adenosyl-L-methionine as a substrate. It was previously known as cell division protein ftsJ.; GO: 0016436 rRNA (uridine) methyltransferase activity, 0006364 rRNA processing.
Probab=98.56 E-value=1.7e-07 Score=63.10 Aligned_cols=107 Identities=17% Similarity=0.179 Sum_probs=84.1
Q ss_pred CCCCCEEEECCCCCHHHHHHHHH-CCCCEEEEECCHHHH--HHHHHHCCCCCHH----------HHCCCCCCCCHHHHHH
Q ss_conf 89870999859985899999862-697089972001135--7753110012001----------1014333522266666
Q gi|254780322|r 45 QTFENALELHGITGIVGYTCMET-KKIHRMIRAEISTEF--STLKREVISCPLE----------EIPSISQSVDLILSPL 111 (273)
Q Consensus 45 ~~~~~vLdlGcGtG~~~~~l~~~-~~~~~v~~~D~s~~~--~~~~~~~~~~d~e----------~l~~~~~sfDli~s~~ 111 (273)
T Consensus 31 k~G~~VlDLGAAPGGWsQva~~~~G~kG~ViA~Dl~~~k~FP~~nv~fi~GDftdee~l~ki~~~~g~dekk~DVV~SDa 110 (192)
T TIGR00438 31 KPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMKGFPIENVDFIRGDFTDEEVLNKILERVGDDEKKVDVVMSDA 110 (192)
T ss_pred ECCCEEEECCCCCCCHHHHHHHHHCCCCEEEEEECCCCCCCCCCCEEEEECCCCCHHHHHHHHHHCCCCCCEEEEEEECC
T ss_conf 07886786578987387788776068533899854557885646614754476787899999985789874377898526
Q ss_pred HHHC----CCCH-------HHHHHHHHHHHCCCCEEEEEECCCCCCHHHHH
Q ss_conf 7422----2346-------99999999981878708984068676334778
Q gi|254780322|r 112 NLHI----INDT-------LEMFSKINHMLKPGGMFLAAIPGIGTLHELRK 151 (273)
Q Consensus 112 ~l~w----~~d~-------~~~l~~~~r~LkpgG~~~~s~~~~~~~~el~~ 151 (273)
T Consensus 111 aP~~SG~~~iDh~Rs~dLv~~aL~ia~~vL~~~GnfvvKvFqGe~~d~y~~ 161 (192)
T TIGR00438 111 APNISGIWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKVFQGEEIDEYLN 161 (192)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCHHHHHH
T ss_conf 888789875434437999999999999986158989999853742889999