HHsearch alignment for GI: 254780322 and conserved domain: TIGR00478
>TIGR00478 tly hemolysin A; InterPro: IPR004538 Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture. The mechanism of action is not well defined. Hemolysin A is induced by sodium ribonucleate, and is produced by pathogenic bacterial strains. Hemolysin A from Treponema hyodysenteriae causes swine dysentry.; GO: 0003723 RNA binding, 0019836 hemolysis by symbiont of host red blood cells.
Probab=93.64 E-value=0.13 Score=28.80 Aligned_cols=97 Identities=12% Similarity=0.177 Sum_probs=63.7
Q ss_pred HHHHHHHHHHCCCCC--CCEEEECCCCCHHHHHHHHHCCCCEEEEECCHHHHHHHHHH-----------CCC-----CCH
Q ss_conf 999997898636898--70999859985899999862697089972001135775311-----------001-----200
Q gi|254780322|r 33 AKEIAFRLNMINQTF--ENALELHGITGIVGYTCMETKKIHRMIRAEISTEFSTLKRE-----------VIS-----CPL 94 (273)
Q Consensus 33 a~~l~~~l~~~~~~~--~~vLdlGcGtG~~~~~l~~~~~~~~v~~~D~s~~~~~~~~~-----------~~~-----~d~ 94 (273)
T Consensus 62 G~KL~~~L~~F~~~vk~ki~lD~GsS~GGFtd~aL~~GA-k~VY~vDVG~~ql~~kLR~D~Rv~~~eR~N~rGy~T~~d~ 140 (240)
T TIGR00478 62 GEKLKEALEEFEVDVKNKIVLDVGSSTGGFTDCALQKGA-KEVYGVDVGYNQLAEKLRQDERVKVLERTNIRGYVTPADI 140 (240)
T ss_pred HHHHHHHCCCCCEEECCEEEEEECCCCCHHHHHHHHCCC-CEEEEEEECCHHHHHHCCCCCEEEEEECCCCCCCCCHHHH
T ss_conf 589998535433133786899705673048999987058-4677786032133432363662689645787444665654
Q ss_pred H-HHCCCC-CCCCHHHHHHHHHCCCCHHHHHHHHHHHHCCCCEEEE
Q ss_conf 1-101433-3522266666742223469999999998187870898
Q gi|254780322|r 95 E-EIPSIS-QSVDLILSPLNLHIINDTLEMFSKINHMLKPGGMFLA 138 (273)
Q Consensus 95 e-~l~~~~-~sfDli~s~~~l~w~~d~~~~l~~~~r~LkpgG~~~~ 138 (273)
T Consensus 141 ~~~qP~P~lA~~DvSFiS--------l~~il~~L~~lL~P~~~~~~ 178 (240)
T TIGR00478 141 VKDQPMPDLAVVDVSFIS--------LISILPELLLLLNPDNDLLL 178 (240)
T ss_pred HCCCCCCCHHHHHHHHHH--------HHHHHHHHHHHHCCCCEEEE
T ss_conf 078889731444457887--------99999988875088960788