HHsearch alignment for GI: 254780322 and conserved domain: TIGR00478

>TIGR00478 tly hemolysin A; InterPro: IPR004538 Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture. The mechanism of action is not well defined. Hemolysin A is induced by sodium ribonucleate, and is produced by pathogenic bacterial strains. Hemolysin A from Treponema hyodysenteriae causes swine dysentry.; GO: 0003723 RNA binding, 0019836 hemolysis by symbiont of host red blood cells.
Probab=93.64  E-value=0.13  Score=28.80  Aligned_cols=97  Identities=12%  Similarity=0.177  Sum_probs=63.7

Q ss_pred             HHHHHHHHHHCCCCC--CCEEEECCCCCHHHHHHHHHCCCCEEEEECCHHHHHHHHHH-----------CCC-----CCH
Q ss_conf             999997898636898--70999859985899999862697089972001135775311-----------001-----200
Q gi|254780322|r   33 AKEIAFRLNMINQTF--ENALELHGITGIVGYTCMETKKIHRMIRAEISTEFSTLKRE-----------VIS-----CPL   94 (273)
Q Consensus        33 a~~l~~~l~~~~~~~--~~vLdlGcGtG~~~~~l~~~~~~~~v~~~D~s~~~~~~~~~-----------~~~-----~d~   94 (273)
T Consensus        62 G~KL~~~L~~F~~~vk~ki~lD~GsS~GGFtd~aL~~GA-k~VY~vDVG~~ql~~kLR~D~Rv~~~eR~N~rGy~T~~d~  140 (240)
T TIGR00478        62 GEKLKEALEEFEVDVKNKIVLDVGSSTGGFTDCALQKGA-KEVYGVDVGYNQLAEKLRQDERVKVLERTNIRGYVTPADI  140 (240)
T ss_pred             HHHHHHHCCCCCEEECCEEEEEECCCCCHHHHHHHHCCC-CEEEEEEECCHHHHHHCCCCCEEEEEECCCCCCCCCHHHH
T ss_conf             589998535433133786899705673048999987058-4677786032133432363662689645787444665654


Q ss_pred             H-HHCCCC-CCCCHHHHHHHHHCCCCHHHHHHHHHHHHCCCCEEEE
Q ss_conf             1-101433-3522266666742223469999999998187870898
Q gi|254780322|r   95 E-EIPSIS-QSVDLILSPLNLHIINDTLEMFSKINHMLKPGGMFLA  138 (273)
Q Consensus        95 e-~l~~~~-~sfDli~s~~~l~w~~d~~~~l~~~~r~LkpgG~~~~  138 (273)
T Consensus       141 ~~~qP~P~lA~~DvSFiS--------l~~il~~L~~lL~P~~~~~~  178 (240)
T TIGR00478       141 VKDQPMPDLAVVDVSFIS--------LISILPELLLLLNPDNDLLL  178 (240)
T ss_pred             HCCCCCCCHHHHHHHHHH--------HHHHHHHHHHHHCCCCEEEE
T ss_conf             078889731444457887--------99999988875088960788