HHsearch alignment for GI: 254780322 and conserved domain: TIGR02081
>TIGR02081 metW methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In Pseudomonas putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells . .
Probab=99.49 E-value=2.3e-13 Score=97.28 Aligned_cols=144 Identities=17% Similarity=0.143 Sum_probs=100.2
Q ss_pred HHHCCCCCCCEEEECCCCCHHHHHHHHHC-CCC------EEEEECCHHHHHHHH----HHCCCCCHHH-H-CCCCCCCCH
Q ss_conf 98636898709998599858999998626-970------899720011357753----1100120011-0-143335222
Q gi|254780322|r 40 LNMINQTFENALELHGITGIVGYTCMETK-KIH------RMIRAEISTEFSTLK----REVISCPLEE-I-PSISQSVDL 106 (273)
Q Consensus 40 l~~~~~~~~~vLdlGcGtG~~~~~l~~~~-~~~------~v~~~D~s~~~~~~~----~~~~~~d~e~-l-~~~~~sfDl 106 (273)
T Consensus 8 ~~~I-p~GSRVLDLGCGdG~LL~~L~d~k~v~GPPttehRL~G~Eid~~~v~Ac~~RGv~VIq~Dld~GL~~F~D~~FD~ 86 (205)
T TIGR02081 8 LDLI-PPGSRVLDLGCGDGELLALLRDEKQVRGPPTTEHRLYGIEIDQDGVLACVARGVSVIQGDLDEGLEAFPDKSFDY 86 (205)
T ss_pred HHHC-CCCCEEEEECCCCHHHHHHHHHHCCCCCCCCCCCEEEEEEECHHHHHHHHHCCCCEECCCCCCCCCCCCCCCCCE
T ss_conf 8616-888736410168878999999743789888712000102345445999986252013006003401167887662
Q ss_pred HHHHHHHHCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHH-HHH-HHC-CCCCCCC----CCCCHHHHHH
Q ss_conf 66666742223469999999998187870898406867633477889987-545-426-8664216----7459999999
Q gi|254780322|r 107 ILSPLNLHIINDTLEMFSKINHMLKPGGMFLAAIPGIGTLHELRKALLKA-ETE-LTG-GASPRVI----PFMDIKSAGT 179 (273)
Q Consensus 107 i~s~~~l~w~~d~~~~l~~~~r~LkpgG~~~~s~~~~~~~~el~~~~~~a-~~~-~~~-~~~~~~~----~~~~~~~~~~ 179 (273)
T Consensus 87 ViLsQTLQa~~Np~~iL~EmLRvg~---~aIVSFPN-FGyW~~R~~i~~~GRMPkVt~~lPY~WynTPNiHfcT~~DF~~ 162 (205)
T TIGR02081 87 VILSQTLQATRNPEEILDEMLRVGR---RAIVSFPN-FGYWRVRWSILTGGRMPKVTDELPYEWYNTPNIHFCTLADFEE 162 (205)
T ss_pred EEECHHHHHHHCHHHHHHHHHHHCC---EEEEECCC-CCCHHCHHHEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH
T ss_conf 5421356642256899988776738---51560588-7711010311107858878878788888888753233778999
Q ss_pred HHHHCCCCC
Q ss_conf 998508985
Q gi|254780322|r 180 LMEKSGFIS 188 (273)
Q Consensus 180 ll~~agf~~ 188 (273)
T Consensus 163 L~~~~~~~i 171 (205)
T TIGR02081 163 LCEELNLRI 171 (205)
T ss_pred HHHHCCCEE
T ss_conf 998719651