HHsearch alignment for GI: 254780322 and conserved domain: TIGR02081

>TIGR02081 metW methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In Pseudomonas putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells . .
Probab=99.49  E-value=2.3e-13  Score=97.28  Aligned_cols=144  Identities=17%  Similarity=0.143  Sum_probs=100.2

Q ss_pred             HHHCCCCCCCEEEECCCCCHHHHHHHHHC-CCC------EEEEECCHHHHHHHH----HHCCCCCHHH-H-CCCCCCCCH
Q ss_conf             98636898709998599858999998626-970------899720011357753----1100120011-0-143335222
Q gi|254780322|r   40 LNMINQTFENALELHGITGIVGYTCMETK-KIH------RMIRAEISTEFSTLK----REVISCPLEE-I-PSISQSVDL  106 (273)
Q Consensus        40 l~~~~~~~~~vLdlGcGtG~~~~~l~~~~-~~~------~v~~~D~s~~~~~~~----~~~~~~d~e~-l-~~~~~sfDl  106 (273)
T Consensus         8 ~~~I-p~GSRVLDLGCGdG~LL~~L~d~k~v~GPPttehRL~G~Eid~~~v~Ac~~RGv~VIq~Dld~GL~~F~D~~FD~   86 (205)
T TIGR02081         8 LDLI-PPGSRVLDLGCGDGELLALLRDEKQVRGPPTTEHRLYGIEIDQDGVLACVARGVSVIQGDLDEGLEAFPDKSFDY   86 (205)
T ss_pred             HHHC-CCCCEEEEECCCCHHHHHHHHHHCCCCCCCCCCCEEEEEEECHHHHHHHHHCCCCEECCCCCCCCCCCCCCCCCE
T ss_conf             8616-888736410168878999999743789888712000102345445999986252013006003401167887662


Q ss_pred             HHHHHHHHCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHH-HHH-HHC-CCCCCCC----CCCCHHHHHH
Q ss_conf             66666742223469999999998187870898406867633477889987-545-426-8664216----7459999999
Q gi|254780322|r  107 ILSPLNLHIINDTLEMFSKINHMLKPGGMFLAAIPGIGTLHELRKALLKA-ETE-LTG-GASPRVI----PFMDIKSAGT  179 (273)
Q Consensus       107 i~s~~~l~w~~d~~~~l~~~~r~LkpgG~~~~s~~~~~~~~el~~~~~~a-~~~-~~~-~~~~~~~----~~~~~~~~~~  179 (273)
T Consensus        87 ViLsQTLQa~~Np~~iL~EmLRvg~---~aIVSFPN-FGyW~~R~~i~~~GRMPkVt~~lPY~WynTPNiHfcT~~DF~~  162 (205)
T TIGR02081        87 VILSQTLQATRNPEEILDEMLRVGR---RAIVSFPN-FGYWRVRWSILTGGRMPKVTDELPYEWYNTPNIHFCTLADFEE  162 (205)
T ss_pred             EEECHHHHHHHCHHHHHHHHHHHCC---EEEEECCC-CCCHHCHHHEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH
T ss_conf             5421356642256899988776738---51560588-7711010311107858878878788888888753233778999


Q ss_pred             HHHHCCCCC
Q ss_conf             998508985
Q gi|254780322|r  180 LMEKSGFIS  188 (273)
Q Consensus       180 ll~~agf~~  188 (273)
T Consensus       163 L~~~~~~~i  171 (205)
T TIGR02081       163 LCEELNLRI  171 (205)
T ss_pred             HHHHCCCEE
T ss_conf             998719651