HHsearch alignment for GI: 254780322 and conserved domain: TIGR03534

>TIGR03534 RF_mod_HemK protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK, a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. However, the family is diverse enough that even many members of the seed alignment do not score above the seed alignment, which was set high enough to exclude all instances of PrmB.
Probab=99.23  E-value=4.7e-11  Score=83.81  Aligned_cols=113  Identities=20%  Similarity=0.253  Sum_probs=80.0

Q ss_pred             HHHHHHHHHHHHHH-HHCCCCCCCEEEECCCCCHHHHHHHHHCCCCEEEEECCHHHHHHHHHH-----------CCCCCH
Q ss_conf             89999999999789-863689870999859985899999862697089972001135775311-----------001200
Q gi|254780322|r   27 FLLDRVAKEIAFRL-NMINQTFENALELHGITGIVGYTCMETKKIHRMIRAEISTEFSTLKRE-----------VISCPL   94 (273)
Q Consensus        27 ~l~~~~a~~l~~~l-~~~~~~~~~vLdlGcGtG~~~~~l~~~~~~~~v~~~D~s~~~~~~~~~-----------~~~~d~   94 (273)
T Consensus        67 LIPRpETE~Lve~~l~~~~~~~~~ilDlgtGSG~I~i~la~~~~~~~v~~~Dis~~Al~~A~~N~~~~~~~~v~~~~~d~  146 (251)
T TIGR03534        67 LIPRPDTEELVEAALERLKKGPLKVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAKRLGLENVRFLKSDW  146 (251)
T ss_pred             EEECCCHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEEEECCH
T ss_conf             86488339999999997314898699955671699999999679978999989879999999999980998268651314


Q ss_pred             HHHCCCCCCCCHHHHHH---------HHHC-C----------------CCHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf             11014333522266666---------7422-2----------------346999999999818787089840
Q gi|254780322|r   95 EEIPSISQSVDLILSPL---------NLHI-I----------------NDTLEMFSKINHMLKPGGMFLAAI  140 (273)
Q Consensus        95 e~l~~~~~sfDli~s~~---------~l~w-~----------------~d~~~~l~~~~r~LkpgG~~~~s~  140 (273)
T Consensus       147 ~~-~~~~~~fDlIvsNPPYI~~~e~~~l~~eV~~~EP~~AL~gg~dGl~~~~~ii~~a~~~L~~~G~l~~Ei  217 (251)
T TIGR03534       147 FE-PLPGGKFDLIVSNPPYIPEADIHLLDPEVRFHEPKLALFAGEDGLDFYRRIIAQAPRYLKPGGWLLLEI  217 (251)
T ss_pred             HH-CCCCCCCCEEEECCCCCCHHHHHHCCCHHCCCCHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEE
T ss_conf             32-156898668997899887456663286010267299971798469999999999998536798899996