HHsearch alignment for GI: 254780322 and conserved domain: TIGR03534
>TIGR03534 RF_mod_HemK protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK, a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. However, the family is diverse enough that even many members of the seed alignment do not score above the seed alignment, which was set high enough to exclude all instances of PrmB.
Probab=99.23 E-value=4.7e-11 Score=83.81 Aligned_cols=113 Identities=20% Similarity=0.253 Sum_probs=80.0
Q ss_pred HHHHHHHHHHHHHH-HHCCCCCCCEEEECCCCCHHHHHHHHHCCCCEEEEECCHHHHHHHHHH-----------CCCCCH
Q ss_conf 89999999999789-863689870999859985899999862697089972001135775311-----------001200
Q gi|254780322|r 27 FLLDRVAKEIAFRL-NMINQTFENALELHGITGIVGYTCMETKKIHRMIRAEISTEFSTLKRE-----------VISCPL 94 (273)
Q Consensus 27 ~l~~~~a~~l~~~l-~~~~~~~~~vLdlGcGtG~~~~~l~~~~~~~~v~~~D~s~~~~~~~~~-----------~~~~d~ 94 (273)
T Consensus 67 LIPRpETE~Lve~~l~~~~~~~~~ilDlgtGSG~I~i~la~~~~~~~v~~~Dis~~Al~~A~~N~~~~~~~~v~~~~~d~ 146 (251)
T TIGR03534 67 LIPRPDTEELVEAALERLKKGPLKVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAKRLGLENVRFLKSDW 146 (251)
T ss_pred EEECCCHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEEEECCH
T ss_conf 86488339999999997314898699955671699999999679978999989879999999999980998268651314
Q ss_pred HHHCCCCCCCCHHHHHH---------HHHC-C----------------CCHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf 11014333522266666---------7422-2----------------346999999999818787089840
Q gi|254780322|r 95 EEIPSISQSVDLILSPL---------NLHI-I----------------NDTLEMFSKINHMLKPGGMFLAAI 140 (273)
Q Consensus 95 e~l~~~~~sfDli~s~~---------~l~w-~----------------~d~~~~l~~~~r~LkpgG~~~~s~ 140 (273)
T Consensus 147 ~~-~~~~~~fDlIvsNPPYI~~~e~~~l~~eV~~~EP~~AL~gg~dGl~~~~~ii~~a~~~L~~~G~l~~Ei 217 (251)
T TIGR03534 147 FE-PLPGGKFDLIVSNPPYIPEADIHLLDPEVRFHEPKLALFAGEDGLDFYRRIIAQAPRYLKPGGWLLLEI 217 (251)
T ss_pred HH-CCCCCCCCEEEECCCCCCHHHHHHCCCHHCCCCHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEE
T ss_conf 32-156898668997899887456663286010267299971798469999999999998536798899996