HHsearch alignment for GI: 254780322 and conserved domain: pfam05175
>pfam05175 MTS Methyltransferase small domain. This domain is found in ribosomal RNA small subunit methyltransferase C as well as other methyltransferases .
Probab=99.51 E-value=4.2e-14 Score=101.61 Aligned_cols=109 Identities=18% Similarity=0.157 Sum_probs=82.2
Q ss_pred HHHHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHCCCCEEEEECCHHHHHHHHHH-----------CCCCCHHHHC
Q ss_conf 99999999789863689870999859985899999862697089972001135775311-----------0012001101
Q gi|254780322|r 30 DRVAKEIAFRLNMINQTFENALELHGITGIVGYTCMETKKIHRMIRAEISTEFSTLKRE-----------VISCPLEEIP 98 (273)
Q Consensus 30 ~~~a~~l~~~l~~~~~~~~~vLdlGcGtG~~~~~l~~~~~~~~v~~~D~s~~~~~~~~~-----------~~~~d~e~l~ 98 (273)
T Consensus 17 D~Gt~lLl~~l~~--~~~g~vLDlGcG~G~i~~~la~~~p~~~v~~vDi~~~Al~~a~~N~~~n~l~~v~v~~~D~~~-~ 93 (170)
T pfam05175 17 DIGSRLLLSHLPK--PLGGKVLDLGCGYGVLGAALAKRSPDLEVTMVDINARALESARANLAANGLENGEVFWSDLYS-A 93 (170)
T ss_pred CHHHHHHHHCCCC--CCCCCEEEECCCCCHHHHHHHHHCCCCEEEECHHHHHHHHHHHHHHHHHCCCEEEEEECCCCC-C
T ss_conf 9899999970897--789949997764829899999978986798515449999999999998099848999744666-5
Q ss_pred CCCCCCCHHHHHHHHHCCCC-----HHHHHHHHHHHHCCCCEEEEEEC
Q ss_conf 43335222666667422234-----69999999998187870898406
Q gi|254780322|r 99 SISQSVDLILSPLNLHIIND-----TLEMFSKINHMLKPGGMFLAAIP 141 (273)
Q Consensus 99 ~~~~sfDli~s~~~l~w~~d-----~~~~l~~~~r~LkpgG~~~~s~~ 141 (273)
T Consensus 94 ~~~~~fD~IvsNPP~h~g~~~~~~~~~~~i~~A~~~L~pgG~l~~V~n 141 (170)
T pfam05175 94 VEPGKFDLIISNPPFHAGKATDYDVAQRFIAGAARHLKPGGELWIVAN 141 (170)
T ss_pred CCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEE
T ss_conf 778866089989772114203289999999999996164979999998