HHsearch alignment for GI: 254780322 and conserved domain: pfam05958
>pfam05958 tRNA_U5-meth_tr tRNA (Uracil-5-)-methyltransferase. This family consists of (Uracil-5-)-methyltransferases EC:2.1.1.35 from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity.
Probab=97.08 E-value=0.0016 Score=39.92 Aligned_cols=62 Identities=15% Similarity=0.044 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHHH-HCCCCCCCEEEECCCCCHHHHHHHHHCCCCEEEEECCHHHHHHHHHHCCC
Q ss_conf 99999999997898-63689870999859985899999862697089972001135775311001
Q gi|254780322|r 28 LLDRVAKEIAFRLN-MINQTFENALELHGITGIVGYTCMETKKIHRMIRAEISTEFSTLKREVIS 91 (273)
Q Consensus 28 l~~~~a~~l~~~l~-~~~~~~~~vLdlGcGtG~~~~~l~~~~~~~~v~~~D~s~~~~~~~~~~~~ 91 (273)
T Consensus 178 vN~~~~~~l~~~a~~~~~~~~~~vlDlYcG~Gtfsl~lA~~~--~~V~GvE~~~~AV~~A~~Na~ 240 (353)
T pfam05958 178 PNAAVNIKMLEWACEVTQGSKGDLLELYCGNGNFSLALAQNF--RRVLATEIAKPSVNAAQYNIA 240 (353)
T ss_pred CCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHC--CEEEEEECCHHHHHHHHHHHH
T ss_conf 698999999999999862689958998468888889998647--879999625999999999899