HHsearch alignment for GI: 254780322 and conserved domain: pfam06859
>pfam06859 Bin3 Bicoid-interacting protein 3 (Bin3). This family represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation. Note that family members contain a conserved HLN motif.
Probab=93.94 E-value=0.023 Score=33.10 Aligned_cols=37 Identities=24% Similarity=0.520 Sum_probs=31.9
Q ss_pred CCCHHHHHHHHHCC------CCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 52226666674222------34699999999981878708984
Q gi|254780322|r 103 SVDLILSPLNLHII------NDTLEMFSKINHMLKPGGMFLAA 139 (273)
Q Consensus 103 sfDli~s~~~l~w~------~d~~~~l~~~~r~LkpgG~~~~s 139 (273)
T Consensus 1 ~fD~i~clSvtkWIHLN~GD~Gl~~~f~~~~~~l~pgg~lilE 43 (110)
T pfam06859 1 EFDVILCLSVTKWVHLNWGDEGLKRFFRRIYRLLRPGGILILE 43 (110)
T ss_pred CCCEEEEEEEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 9658999662024555464288999999999961889889996