BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|254780322|ref|YP_003064735.1| SAM-dependent
methyltransferase protein [Candidatus Liberibacter asiaticus str.
psy62]
(273 letters)
Database: las_proteome
1233 sequences; 328,796 total letters
Searching...................................................done
>gi|254780322|ref|YP_003064735.1| SAM-dependent methyltransferase protein [Candidatus Liberibacter
asiaticus str. psy62]
Length = 273
Score = 563 bits (1452), Expect = e-163, Method: Compositional matrix adjust.
Identities = 273/273 (100%), Positives = 273/273 (100%)
Query: 1 MNILFDMQLINRNRLRSFRQKDFSVYFLLDRVAKEIAFRLNMINQTFENALELHGITGIV 60
MNILFDMQLINRNRLRSFRQKDFSVYFLLDRVAKEIAFRLNMINQTFENALELHGITGIV
Sbjct: 1 MNILFDMQLINRNRLRSFRQKDFSVYFLLDRVAKEIAFRLNMINQTFENALELHGITGIV 60
Query: 61 GYTCMETKKIHRMIRAEISTEFSTLKREVISCPLEEIPSISQSVDLILSPLNLHIINDTL 120
GYTCMETKKIHRMIRAEISTEFSTLKREVISCPLEEIPSISQSVDLILSPLNLHIINDTL
Sbjct: 61 GYTCMETKKIHRMIRAEISTEFSTLKREVISCPLEEIPSISQSVDLILSPLNLHIINDTL 120
Query: 121 EMFSKINHMLKPGGMFLAAIPGIGTLHELRKALLKAETELTGGASPRVIPFMDIKSAGTL 180
EMFSKINHMLKPGGMFLAAIPGIGTLHELRKALLKAETELTGGASPRVIPFMDIKSAGTL
Sbjct: 121 EMFSKINHMLKPGGMFLAAIPGIGTLHELRKALLKAETELTGGASPRVIPFMDIKSAGTL 180
Query: 181 MEKSGFISPIIDQDTYTVYYKSMLHLMHDLRGMGMSNPLIRRSKTPPYKSLFKRASTIYT 240
MEKSGFISPIIDQDTYTVYYKSMLHLMHDLRGMGMSNPLIRRSKTPPYKSLFKRASTIYT
Sbjct: 181 MEKSGFISPIIDQDTYTVYYKSMLHLMHDLRGMGMSNPLIRRSKTPPYKSLFKRASTIYT 240
Query: 241 EENSDLTGNVTASFSIIYVMGWKSTTFKTGTDE 273
EENSDLTGNVTASFSIIYVMGWKSTTFKTGTDE
Sbjct: 241 EENSDLTGNVTASFSIIYVMGWKSTTFKTGTDE 273
>gi|254781094|ref|YP_003065507.1| glycyl-tRNA synthetase subunit beta [Candidatus Liberibacter
asiaticus str. psy62]
Length = 702
Score = 25.8 bits (55), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 36/83 (43%), Gaps = 19/83 (22%)
Query: 64 CMETKKIHRMIRAEISTEFSTLKREVISC------------PLEEIPSISQSVDLILSPL 111
C E + ++ +I E++ L+ E ISC PLE +P+ S+ + L+
Sbjct: 423 CTEIVREFPELQGKIGKEYAVLQNENISCCDAIEEHLKPRGPLENVPTNKISITVSLADK 482
Query: 112 NLHIINDTLEMFSKINHMLKPGG 134
DTL F IN KP G
Sbjct: 483 -----LDTLINFWAINE--KPSG 498
>gi|254780214|ref|YP_003064627.1| metal-dependent hydrolase protein [Candidatus Liberibacter
asiaticus str. psy62]
Length = 271
Score = 25.0 bits (53), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 11/40 (27%), Positives = 21/40 (52%)
Query: 31 RVAKEIAFRLNMINQTFENALELHGITGIVGYTCMETKKI 70
+V +E ++ + T +A +HGI G+ GY + + I
Sbjct: 67 QVLREQVLSIDAVLYTHPHADHIHGIDGLRGYFLKQKRPI 106
>gi|254780794|ref|YP_003065207.1| tryptophanyl-tRNA synthetase [Candidatus Liberibacter asiaticus
str. psy62]
Length = 355
Score = 25.0 bits (53), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 26/62 (41%), Gaps = 2/62 (3%)
Query: 47 FENALELHGITGIVGYTCMETKKIHRMIRAEISTEFSTLKREVISCPLEEIPSISQSVDL 106
EN LE + I + M KI ++ FS K + +EEI ISQ +
Sbjct: 260 LENRLEAKNLIEI--FATMRQIKIEEALKQFGGKNFSQFKLALADAVIEEIVPISQKIQH 317
Query: 107 IL 108
+L
Sbjct: 318 LL 319
>gi|254780582|ref|YP_003064995.1| Methyltransferase type 11 [Candidatus Liberibacter asiaticus str.
psy62]
Length = 242
Score = 24.6 bits (52), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 13/45 (28%), Positives = 19/45 (42%)
Query: 97 IPSISQSVDLILSPLNLHIINDTLEMFSKINHMLKPGGMFLAAIP 141
+P SVD +L L D M +I +L GG + +P
Sbjct: 89 LPLADSSVDCVLMVHYLEFAEDPFLMLHEIWRVLTSGGRMIVVVP 133
>gi|254780954|ref|YP_003065367.1| hypothetical protein CLIBASIA_04265 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 380
Score = 24.6 bits (52), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 19/30 (63%)
Query: 190 IIDQDTYTVYYKSMLHLMHDLRGMGMSNPL 219
IIDQ++ VY+ S L+L R + + +PL
Sbjct: 151 IIDQESDQVYFLSDLNLQISARFLNIISPL 180
>gi|254781112|ref|YP_003065525.1| putative amino acid-binding periplasmic ABC transporter protein
[Candidatus Liberibacter asiaticus str. psy62]
Length = 274
Score = 24.3 bits (51), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 27/48 (56%), Gaps = 7/48 (14%)
Query: 34 KEIAFRLNMINQTFENALELHGITGIVGYTCMETKKIHRMIRAEISTE 81
KE+A RLN+ + FE A ++G++ T ++T + ++ I+ E
Sbjct: 74 KEVAHRLNLKVEFFETA-----VSGLI--TGLDTNRYDVLVNVAITPE 114
Database: las_proteome
Posted date: Jun 5, 2011 6:30 PM
Number of letters in database: 328,796
Number of sequences in database: 1233
Lambda K H
0.322 0.136 0.389
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 167,925
Number of Sequences: 1233
Number of extensions: 6801
Number of successful extensions: 18
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 10
Number of HSP's gapped (non-prelim): 10
length of query: 273
length of database: 328,796
effective HSP length: 73
effective length of query: 200
effective length of database: 238,787
effective search space: 47757400
effective search space used: 47757400
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 38 (19.2 bits)