HHsearch alignment for GI: 254780323 and conserved domain: COG2223
>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism].
Probab=97.36 E-value=0.017 Score=37.41 Aligned_cols=384 Identities=13% Similarity=0.065 Sum_probs=180.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHCCHHHHHHHH
Q ss_conf 112327999999999999999999998778865124--85446799999999999--99999999999633899999999
Q gi|254780323|r 23 MSEAKKFIPMTLMMFLVLFNFSTLRPIKDSLVVPHM--GAEIISFVKLWCVFPSA--ILFTILYMKLSNILETEKLFYVV 98 (491)
Q Consensus 23 ~~E~~~~~~~~~~~F~i~~~y~~lr~~rd~l~~~~~--g~e~lp~l~~~~~l~~s--~~~~~~y~~l~~~~~~~~l~~~~ 98 (491)
T Consensus 9 k~~~~~~L~~S~~af~v~F~VW~l~s~l~~~i~~~~~LS~~q~~ll---~aiPil~GallRl~~g~l~drfGgR~~~~~s 85 (417)
T COG2223 9 KRIARRNLWLSTLAFDVGFMVWTLFSPLGVFIKSDFGLSEGQKGLL---VAIPILVGALLRLPYGFLTDRFGGRKWTILS 85 (417)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHH---HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH
T ss_conf 4400579999999999999999999998865412148898889999---9999987478998777534012843799999
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHH
Q ss_conf 9999999999999984210014652345555310101344578765557999999999999-----99999999999998
Q gi|254780323|r 99 VSFFVSFFAIFAFLLYPYRDFLHPSPESIRALASSWPYLKWFIYLAGKWSFALFYVFAELW-----GAVMINLMFWQFAN 173 (491)
Q Consensus 99 ~~~f~~~~~~f~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~fYv~~e~~-----~~~vis~~FW~~~n 173 (491)
T Consensus 86 ~~l~~IP~~~~~~a~-------------------------------~~~~~~~-ll~~gll~G~~GasFav~m---~~~s 130 (417)
T COG2223 86 MLLLLIPCLGLAFAV-------------------------------TYPSTWQ-LLVIGLLLGLAGASFAVGM---PNAS 130 (417)
T ss_pred HHHHHHHHHHHHHHC-------------------------------CCCCHHH-HHHHHHHHHCCCCEEHCCC---CCCC
T ss_conf 999999999999971-------------------------------2875689-9999999701663000025---4421
Q ss_pred HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 64098998999999998999999998899999963012322489999999999999999999998402452233200001
Q gi|254780323|r 174 RITKTEEATRFYATFGLVGNVGLIFAGGIVKTFSKLTNELMIYYSMLTLILSSILLMAVYRWMNLYVLTDPQQYSPKRGS 253 (491)
Q Consensus 174 ~~f~~~qaKRlf~li~~g~~ig~i~gg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 253 (491)
T Consensus 131 ~~fP~~~qG~AlGI~g-~GN~G~av~q~~~P~v~~~~g~~~w~~~~~i~~~~-l~v~~v~~~~~~---~d~p~~----r~ 201 (417)
T COG2223 131 FFFPKEKQGLALGIAG-AGNLGVAVAQLVAPLVAVAFGFLAWRNVAGIYVVA-LAIAAVLAWLGM---NDVPEH----RA 201 (417)
T ss_pred CCCCHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH---CCCHHH----HC
T ss_conf 1188544418988760-55301999999889999997258999999999999-999999999984---768665----23
Q ss_pred CCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 12345788899999983096799999999999999999999999999983299899999999999999999999999978
Q gi|254780323|r 254 VKKKLKLSVLESLRMALNSKYLGYLVLLVICYGTAINLVEGPWKEKVRQLYPTQNSYAQFMGQFIQWTGIVTIVFMILGS 333 (491)
Q Consensus 254 ~~~~~~~~~~~~~k~i~~s~yL~~l~~~v~~~~~~~tl~e~~~k~~~~~~~~~~~~~~af~g~~~~~v~i~tii~qll~~ 333 (491)
T Consensus 202 ~~~~~~~---~~~~~v~~~~~~W~lsllY~~tFG~Fvgfs~~l~~~~~~~fg~~~~~Ag~~a~~f~~~---g~l~Rp~GG 275 (417)
T COG2223 202 SVKPQLP---AQLKAVFSNKDTWLLSLLYFATFGGFVGFSAYLPMYLVTQFGLSPVTAGLIAFLFPLI---GALARPLGG 275 (417)
T ss_pred CCCCCCH---HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH---HHHHHHCCC
T ss_conf 5553200---5778886382069999999999999999999999999986498723188999987889---999985044
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHE
Q ss_conf 99997316789999999999999999999841012346667873002079999999999999998763446466877752
Q gi|254780323|r 334 NILKSFRWFTSAIITPLMILITGGGFFVFVIFEDALLPFTEDVIKLVPLALAVFLGSLQNVLSKATKYTMFDSTKEMAFI 413 (491)
Q Consensus 334 ~ll~r~G~~~~l~i~Pi~~li~~~~ff~~~~~~~~~~~~~~~~~~~~~l~~~v~~~~i~~~~~k~~kYsl~~p~~E~l~~ 413 (491)
T Consensus 276 ~LsDR~Gg~rv~~~~f~~~~~~~~~l---~~~~~~~~~-------~~~~~~~~~~~l~l~~~~--------G~GnGsvfk 337 (417)
T COG2223 276 WLSDRIGGRRVTLAVFVGMALAAALL---SLFLTGFGH-------GGSFVVFVAVFLALFVFA--------GLGNGSVFK 337 (417)
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHH---HCCCCCCCC-------CCCHHHHHHHHHHHHHHH--------CCCCCHHEE
T ss_conf 44331353447999999999999999---705634466-------764399999999999991--------567630033
Q ss_pred ECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 26976736577767888764667779999999999830000233379999999999999999999
Q gi|254780323|r 414 PLDDEFRTKGKAVVDVIGGRMAKSGGAVIQSFIFMLFPMATFSSIVPYLAVFFLCLMFIWIYVVN 478 (491)
Q Consensus 414 pl~~~~R~k~K~~iD~~~~r~Gk~~gs~~~~~l~~~~~~~~~~~~~~~~~~~~i~i~~~Wi~~~~ 478 (491)
T Consensus 338 ~Ip~if~~~-~G~v~G~vga~G~lGGf~lp~~~g~~~~~tg~~~~~f~~~~~~~~~a~v~~~~~y 401 (417)
T COG2223 338 MIPVIFPKE-TGAVTGIVGAIGGLGGFFLPLAFGVSLDLTGSYTGAFMLLLAFYLVALVLTWALY 401 (417)
T ss_pred ECHHHHHHH-HHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 131877866-4678879988542566540489999998426379999999999999999999999