HHsearch alignment for GI: 254780323 and conserved domain: PRK09584
>PRK09584 tppB putative tripeptide transporter permease; Reviewed.
Probab=94.78 E-value=0.33 Score=27.25 Aligned_cols=120 Identities=7% Similarity=-0.101 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
Q ss_conf 999999999999999978999973167899-9999999999999999984101234666787300207999999999999
Q gi|254780323|r 316 QFIQWTGIVTIVFMILGSNILKSFRWFTSA-IITPLMILITGGGFFVFVIFEDALLPFTEDVIKLVPLALAVFLGSLQNV 394 (491)
Q Consensus 316 ~~~~~v~i~tii~qll~~~ll~r~G~~~~l-~i~Pi~~li~~~~ff~~~~~~~~~~~~~~~~~~~~~l~~~v~~~~i~~~ 394 (491)
T Consensus 320 ~fqslNpl~IiilaPl~a~lw~~lg~~~~~p~KfaiG~~l~gl~F~vl~~~~~~--~~~--~g~vs~~W-----lv~~Y~ 390 (500)
T PRK09584 320 QYQALNPFWIMIGSPILAAIYNKMGDTLPMPHKFAIGMVLCSGAFLVLPLGAKF--AND--AGIVSVNW-----LIASYG 390 (500)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH--CCC--CCCCCHHH-----HHHHHH
T ss_conf 998872799999899999999981777883699999999999999999999986--267--88406899-----999999
Q ss_pred HHHHHHHHHHHHHHHHHHEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999876344646687775226976736577767888764667779999999
Q gi|254780323|r 395 LSKATKYTMFDSTKEMAFIPLDDEFRTKGKAVVDVIGGRMAKSGGAVIQSF 445 (491)
Q Consensus 395 ~~k~~kYsl~~p~~E~l~~pl~~~~R~k~K~~iD~~~~r~Gk~~gs~~~~~ 445 (491)
T Consensus 391 l~tigEL~lSPvGLS~vtklAP~~~~s~mMG~w-fls~a~gn~lag~ia~~ 440 (500)
T PRK09584 391 LQSIGELMISGLGLAMVAQLVPQRLMGFIMGSW-FLTTAGAALIAGYVAGL 440 (500)
T ss_pred HHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
T ss_conf 999999997589999999878599999999999-99999999999999998