HHsearch alignment for GI: 254780323 and conserved domain: PRK09952
>PRK09952 shikimate transporter; Provisional.
Probab=99.04 E-value=6.2e-06 Score=64.58 Aligned_cols=348 Identities=14% Similarity=0.145 Sum_probs=170.8
Q ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHH
Q ss_conf 788651248544679999999999999999----9999996338999999999999999999999984210014652345
Q gi|254780323|r 51 DSLVVPHMGAEIISFVKLWCVFPSAILFTI----LYMKLSNILETEKLFYVVVSFFVSFFAIFAFLLYPYRDFLHPSPES 126 (491)
Q Consensus 51 d~l~~~~~g~e~lp~l~~~~~l~~s~~~~~----~y~~l~~~~~~~~l~~~~~~~f~~~~~~f~~~l~p~~~~~~~~~~~ 126 (491)
T Consensus 50 ~~~FFp~~~~-~~~ll~~~~~fa~gfl~RPlGg~ifG~~gDr~GRk~~L~~si~~m~~~T~lig~--lPty~-------~ 119 (438)
T PRK09952 50 NREFFPQVSP-AMGTLAAFATFGVGFLFRPLGGVVFGHFGDRLGRKRMLMLTVWMMGIATALIGL--LPSFS-------T 119 (438)
T ss_pred HHHCCCCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH--CCCHH-------H
T ss_conf 8724999990-799999999999999987589999999997303399999999999999999997--47689-------8
Q ss_pred HHHH----HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 5553----101013445787655579999999999999999999999999864098998999999998999999998899
Q gi|254780323|r 127 IRAL----ASSWPYLKWFIYLAGKWSFALFYVFAELWGAVMINLMFWQFANRITKTEEATRFYATFGLVGNVGLIFAGGI 202 (491)
Q Consensus 127 ~~~~----~~~~~~~~~~~~~~~~w~~~~fYv~~e~~~~~vis~~FW~~~n~~f~~~qaKRlf~li~~g~~ig~i~gg~~ 202 (491)
T Consensus 120 IGi~ApilLv~~R~l------------QGl~~GGE~~~----a---~~~~~E~~p~~~Rg~~~s~~~~~~~~G~llas~~ 180 (438)
T PRK09952 120 IGWWAPVLLVTLRAI------------QGFAVGGEWGG----A---ALLAVESAPKNKKAFYSSGVQVGYGVGLLLSTGL 180 (438)
T ss_pred HHHHHHHHHHHHHHH------------HHHHHHHHHHH----H---HHHHHHHCCCCCCEEEEHHHHHHHHHHHHHHHHH
T ss_conf 888999999999999------------78887612889----9---9999996887773244049999889999999999
Q ss_pred HHHHHHHCCCCCHHHHHH-HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHH
Q ss_conf 999963012322489999-9999999999999999984024522332000011234578889999998309679999999
Q gi|254780323|r 203 VKTFSKLTNELMIYYSML-TLILSSILLMAVYRWMNLYVLTDPQQYSPKRGSVKKKLKLSVLESLRMALNSKYLGYLVLL 281 (491)
Q Consensus 203 ~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~i~~s~yL~~l~~~ 281 (491)
T Consensus 181 ~~~l~~~l~~~~~~~wGWRipFlig~l~~li~l~iR~~l~Esp~f~~~~~~~~~~~~~~p~~e~~~~~~~~-~l~~~~l~ 259 (438)
T PRK09952 181 VSLISMMTTDEQFLSWGWRIPFLFSIVLVLIALWVRNGMEESAEFEQQQHEQAAAKKRIPVIEALLRHPGA-FLKIIALR 259 (438)
T ss_pred HHHHHHHCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHH-HHHHHHHH
T ss_conf 99999836888885314299999999999999999982788878999876233443346699999986599-99999999
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999999999999-999983299899999999999999999999999978999973167899999999999999999
Q gi|254780323|r 282 VICYGTAINLVEGPWK-EKVRQLYPTQNSYAQFMGQFIQWTGIVTIVFMILGSNILKSFRWFTSAIITPLMILITGGGFF 360 (491)
Q Consensus 282 v~~~~~~~tl~e~~~k-~~~~~~~~~~~~~~af~g~~~~~v~i~tii~qll~~~ll~r~G~~~~l~i~Pi~~li~~~~ff 360 (491)
T Consensus 260 -~~-~~~~~y~~~~~~~~y~~~~l~~~~---~~~~~~~~i~~~i~~~~~~~~G~LsDriGRr~~~~~~~l~~~l~~~p~~ 334 (438)
T PRK09952 260 -LC-ELLTMYIVTAFALNYSTQNLGLPR---ELFLNIGLLVGGLSCLTIPCFAWLADRFGRRRVYITGALIGTLSAFPFF 334 (438)
T ss_pred -HH-HHHHHHHHHHHHHHHHHHHCCCCH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
T ss_conf -99-999999999999999998728889---9999999999999999999999999983634999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99841012346667873002079999999999999998763446466877752269767365777678887646677799
Q gi|254780323|r 361 VFVIFEDALLPFTEDVIKLVPLALAVFLGSLQNVLSKATKYTMFDSTKEMAFIPLDDEFRTKGKAVVDVIGGRMAKSGGA 440 (491)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~l~~~v~~~~i~~~~~k~~kYsl~~p~~E~l~~pl~~~~R~k~K~~iD~~~~r~Gk~~gs 440 (491)
T Consensus 335 ~~l~~--------------~~~~~~~~~~~~l~~~~~~~~~~~~~~~---l~ElFPt~vR~TG~g~~Ynig~~i~Gg~aP 397 (438)
T PRK09952 335 MALEA--------------QSIFWIVFFSIMLANIAHDMVVCVQQPM---FTEMFGASYRYSGAGVGYQVASVVGGGFTP 397 (438)
T ss_pred HHHHC--------------CCHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99843--------------8689999999999999999998899999---998688605576899999999999999999
Q ss_pred HHHHHHHHHH
Q ss_conf 9999999983
Q gi|254780323|r 441 VIQSFIFMLF 450 (491)
Q Consensus 441 ~~~~~l~~~~ 450 (491)
T Consensus 398 ~i~~~L~~~~ 407 (438)
T PRK09952 398 FIAAALVTYF 407 (438)
T ss_pred HHHHHHHHHH
T ss_conf 9999999976