HHsearch alignment for GI: 254780323 and conserved domain: PRK11043
>PRK11043 inner membrane transport protein YdhC; Provisional.
Probab=98.52 E-value=0.00021 Score=52.49 Aligned_cols=272 Identities=12% Similarity=0.008 Sum_probs=137.5
Q ss_pred HHHHHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999877886512-4854467999999999999-999999999963389999999999999999999999842
Q gi|254780323|r 38 LVLFNFSTLRPIKDSLVVPH-MGAEIISFVKLWCVFPSAI-LFTILYMKLSNILETEKLFYVVVSFFVSFFAIFAFLLYP 115 (491)
Q Consensus 38 ~i~~~y~~lr~~rd~l~~~~-~g~e~lp~l~~~~~l~~s~-~~~~~y~~l~~~~~~~~l~~~~~~~f~~~~~~f~~~l~p 115 (491)
T Consensus 17 lgplaiDiyLPalP~ia~~f~~~~~~~qltl--s~fl~g~a~gql~~GplsD~~GRr~~ll~gl~~~~~~s~~~~~--a~ 92 (401)
T PRK11043 17 LGFLATDMYLPAFKAIQADLQTSASAVSASL--SLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSIFALGSLGMLW--VE 92 (401)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH--HH
T ss_conf 9999999998429999999696999999999--9999999999999999998827879999999999999999998--88
Q ss_pred CCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
Q ss_conf 10014652345555310101344578765557999999999999999999999999986409899899999999899999
Q gi|254780323|r 116 YRDFLHPSPESIRALASSWPYLKWFIYLAGKWSFALFYVFAELWGAVMINLMFWQFANRITKTEEATRFYATFGLVGNVG 195 (491)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~fYv~~e~~~~~vis~~FW~~~n~~f~~~qaKRlf~li~~g~~ig 195 (491)
T Consensus 93 ~~~--------------------~l------i~~R~l---Qg~g~~~~~-v~~~aiirD~~~~~~~~~~~s~~~~~~~i~ 142 (401)
T PRK11043 93 SAA--------------------ML------LVLRFV---QAVGVCSAA-VIWQALVIDRYPAQKAQRIFATIMPLVALS 142 (401)
T ss_pred HHH--------------------HH------HHHHHH---HHCCHHHHH-HHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
T ss_conf 999--------------------99------999999---873101467-888899984178999999999999999999
Q ss_pred HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCHHH
Q ss_conf 99988999999630123224899999999999999999999984024522332000011234578889999998309679
Q gi|254780323|r 196 LIFAGGIVKTFSKLTNELMIYYSMLTLILSSILLMAVYRWMNLYVLTDPQQYSPKRGSVKKKLKLSVLESLRMALNSKYL 275 (491)
Q Consensus 196 ~i~gg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~i~~s~yL 275 (491)
T Consensus 143 p~laP~iGg~l~~~~g---Wr~iF~~l~~~gvll~l~~--~-~~~---~e~~~~--------~~~~~~~~y~~lL~~r~F 205 (401)
T PRK11043 143 PALAPLLGAWLLNHFG---WQAIFATLFAITLLLILPT--L-WLK---PSKKAR--------NNSQDGLTFKQLLKSKTY 205 (401)
T ss_pred HHHHHHHHHHHHHCCC---HHHHHHHHHHHHHHHHHHH--H-HCC---CCCCCC--------CCCCHHHHHHHHHHCHHH
T ss_conf 9999889999970478---6999999999999999999--8-658---877888--------754235689999808688
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999999999999999999999-9983299899999999999999999999999978999973167899999999999
Q gi|254780323|r 276 GYLVLLVICYGTAINLVEGPWKEK-VRQLYPTQNSYAQFMGQFIQWTGIVTIVFMILGSNILKSFRWFTSAIITPLMILI 354 (491)
Q Consensus 276 ~~l~~~v~~~~~~~tl~e~~~k~~-~~~~~~~~~~~~af~g~~~~~v~i~tii~qll~~~ll~r~G~~~~l~i~Pi~~li 354 (491)
T Consensus 206 ~~~~l~~~~-~~~~~fayis~spfil~~~G~s~~~----fGl~f~~~~l~~i~Gs~l~~rl~~r~g~~~~l~~g~~l~~l 280 (401)
T PRK11043 206 LGNVLIFAA-CSAAFFAWLTGSPFIMEQMGYSPAV----IGLSYVPQTIAFLVGGYGCRAALQKWGGEQLLPWLLVLFAV 280 (401)
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHHCCCHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_conf 999999999-9999999999669999992999999----99999999999999999999999880899999999999999
Q ss_pred HHHHHHHHHHH
Q ss_conf 99999999841
Q gi|254780323|r 355 TGGGFFVFVIF 365 (491)
Q Consensus 355 ~~~~ff~~~~~ 365 (491)
T Consensus 281 ~~~~l~~~~~~ 291 (401)
T PRK11043 281 SVIAIFLAGLL 291 (401)
T ss_pred HHHHHHHHHHH
T ss_conf 99999999987