HHsearch alignment for GI: 254780323 and conserved domain: PRK11102
>PRK11102 bicyclomycin/multidrug efflux system; Provisional.
Probab=99.01 E-value=8.1e-06 Score=63.66 Aligned_cols=253 Identities=11% Similarity=0.067 Sum_probs=134.4
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCHHHHH
Q ss_conf 85446799999999999999999999996338999999999999999999999984210014652345555310101344
Q gi|254780323|r 59 GAEIISFVKLWCVFPSAILFTILYMKLSNILETEKLFYVVVSFFVSFFAIFAFLLYPYRDFLHPSPESIRALASSWPYLK 138 (491)
Q Consensus 59 g~e~lp~l~~~~~l~~s~~~~~~y~~l~~~~~~~~l~~~~~~~f~~~~~~f~~~l~p~~~~~~~~~~~~~~~~~~~~~~~ 138 (491)
T Consensus 24 s~~~~~~~~s~~~l-~~a~~~l~~G~lsD~~GRr~~~~~~~~~~~i~~~~~~~a--~~~~-------------------- 80 (377)
T PRK11102 24 SAGSVQMTLSAYIL-GFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACALA--QTID-------------------- 80 (377)
T ss_pred CHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH--CCHH--------------------
T ss_conf 99899999999999-999999999999998188899999999999999999985--6799--------------------
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH
Q ss_conf 57876555799999999999999999999999998640989989999999989999999988999999630123224899
Q gi|254780323|r 139 WFIYLAGKWSFALFYVFAELWGAVMINLMFWQFANRITKTEEATRFYATFGLVGNVGLIFAGGIVKTFSKLTNELMIYYS 218 (491)
Q Consensus 139 ~~~~~~~~w~~~~fYv~~e~~~~~vis~~FW~~~n~~f~~~qaKRlf~li~~g~~ig~i~gg~~~~~l~~~~~~~~~~~~ 218 (491)
T Consensus 81 ---------~l~~~R~lqG~~~~~~~~-~~~a~i~d~~~~~~~~~~~~~~~~~~~~~~~~~p~iGg~l~~~~g---Wr~~ 147 (377)
T PRK11102 81 ---------QLIVMRFLQGLAAAAASV-VINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGYLLVWFS---WHSI 147 (377)
T ss_pred ---------HHHHHHHHHHHCCCCCCH-HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC---HHHH
T ss_conf ---------999999998653001305-889999970799999998799999999704888887799981356---6899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHH-HHHHHHHHHHHHH
Q ss_conf 999999999999999999984024522332000011234578889999998309679999999999-9999999999999
Q gi|254780323|r 219 MLTLILSSILLMAVYRWMNLYVLTDPQQYSPKRGSVKKKLKLSVLESLRMALNSKYLGYLVLLVIC-YGTAINLVEGPWK 297 (491)
Q Consensus 219 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~i~~s~yL~~l~~~v~~-~~~~~tl~e~~~k 297 (491)
T Consensus 148 F~~~~~~~~l~~~l~~---~~lpet---~-~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~f~~~~p- 218 (377)
T PRK11102 148 FWVLALAAILASALVF---FLIPET---L-PPENRQPF-HLRTTIRNFASLFRHKRVLGYMLASGFSFAGMFSFLTAGP- 218 (377)
T ss_pred HHHHHHHHHHHHHHHH---HHCCCC---C-CCCCCCCC-CHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_conf 9999999999999999---975445---7-84467887-7999999999999586899999999999999999998347-
Q ss_pred HHHHHH-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999983-299899999999999999999999999978999973167899999999999999999
Q gi|254780323|r 298 EKVRQL-YPTQNSYAQFMGQFIQWTGIVTIVFMILGSNILKSFRWFTSAIITPLMILITGGGFF 360 (491)
Q Consensus 298 ~~~~~~-~~~~~~~~af~g~~~~~v~i~tii~qll~~~ll~r~G~~~~l~i~Pi~~li~~~~ff 360 (491)
T Consensus 219 ~~~~~~~gls~~~----~gl~~~~~~~~~~~gs~l~grl~~r~g~~~~~~~gl~i~~~~~~~l~ 278 (377)
T PRK11102 219 FVYIEIYGVSPQN----FGYYFALNIVFLFVMTIINSRFVRRVGALNMLRFGLWIQFIMGIWLV 278 (377)
T ss_pred HHHHHHCCCCHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999982999899----99999999999999999999999995889999999999999999999