HHsearch alignment for GI: 254780323 and conserved domain: PRK11646
>PRK11646 multidrug resistance protein MdtH; Provisional.
Probab=99.56 E-value=9.6e-09 Score=86.77 Aligned_cols=381 Identities=12% Similarity=0.120 Sum_probs=209.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
Q ss_conf 2327999999999999999999998778865124854--46799999999999999999999996338999999999999
Q gi|254780323|r 25 EAKKFIPMTLMMFLVLFNFSTLRPIKDSLVVPHMGAE--IISFVKLWCVFPSAILFTILYMKLSNILETEKLFYVVVSFF 102 (491)
Q Consensus 25 E~~~~~~~~~~~F~i~~~y~~lr~~rd~l~~~~~g~e--~lp~l~~~~~l~~s~~~~~~y~~l~~~~~~~~l~~~~~~~f 102 (491)
T Consensus 8 ~~~~~w~L~~~~~l~~lG~~mv~Pfl~iyl~~~lg~s~~~iGlil~-~~~l~~~~~~~~~G~LsDR~GrK~vii~gl~~~ 86 (400)
T PRK11646 8 RNLGKYFLLIDNMLVVLGFFVVFPLISIRFVDQLGWAAVMVGIALG-LRQFIQQGLGIFGGAIADRFGAKPMIVTGMLMR 86 (400)
T ss_pred HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH-HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_conf 7226799999999999999999999999998607998899999999-999999999861468888618819999999999
Q ss_pred HHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH
Q ss_conf 99999999998421001465234555531010134457876555799999999999999999999999998640989989
Q gi|254780323|r 103 VSFFAIFAFLLYPYRDFLHPSPESIRALASSWPYLKWFIYLAGKWSFALFYVFAELWGAVMINLMFWQFANRITKTEEAT 182 (491)
Q Consensus 103 ~~~~~~f~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~fYv~~e~~~~~vis~~FW~~~n~~f~~~qaK 182 (491)
T Consensus 87 a~~~~~~a~a~-------------------------------s~~~l~~~~~l~G~g~~~~~p-a~~Aliad~t~~~~R~ 134 (400)
T PRK11646 87 AAGFATMGIAH-------------------------------EPWLLWFSCILSGLGGTLFDP-PRSALVIKLIRPQQRG 134 (400)
T ss_pred HHHHHHHHHHC-------------------------------CHHHHHHHHHHHHHHHHHHHH-HHHHHHHHCCCHHHHH
T ss_conf 99999999973-------------------------------599999999999998564679-9999999708876899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCH
Q ss_conf 99999998999999998899999963012322489999999999999999999998402452233200001123457888
Q gi|254780323|r 183 RFYATFGLVGNVGLIFAGGIVKTFSKLTNELMIYYSMLTLILSSILLMAVYRWMNLYVLTDPQQYSPKRGSVKKKLKLSV 262 (491)
Q Consensus 183 Rlf~li~~g~~ig~i~gg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (491)
T Consensus 135 ~~f~l~~~a~niG~~iGpllGg~l~~~~~~--~~----f~~~a~~~~l~~--~~~~~~~p~~---------~~~~~~~~~ 197 (400)
T PRK11646 135 RFFSLLMMQDSAGAVIGALLGSWLLQYDFR--LV----CATGAVLFVLAA--AFNAWLLPAY---------KLSTVRTPV 197 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HH----HHHHHHHHHHHH--HHHHHHCCCC---------CCCCCCCCH
T ss_conf 999999999999999999999999986489--99----999999999999--9999957866---------666667636
Q ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Q ss_conf 99999983096799999999999999999999999999983299899999999999999999999999-97899997316
Q gi|254780323|r 263 LESLRMALNSKYLGYLVLLVICYGTAINLVEGPWKEKVRQLYPTQNSYAQFMGQFIQWTGIVTIVFMI-LGSNILKSFRW 341 (491)
Q Consensus 263 ~~~~k~i~~s~yL~~l~~~v~~~~~~~tl~e~~~k~~~~~~~~~~~~~~af~g~~~~~v~i~tii~ql-l~~~ll~r~G~ 341 (491)
T Consensus 198 ~~~~~~vl~dr~f~~~~l~~~~~~~~~~q~~~~lpl~~~~~~~~~~----~~g~l~~~~~~v~v~lq~pl~~~~~kr~~~ 273 (400)
T PRK11646 198 REGMTRVLRDKRFVTYVLTLAGYYMLAVQVMLMLPIMVNDIAGSPS----AVKWMYAIEACLSLTLLYPIARWSEKRFRL 273 (400)
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHCCH
T ss_conf 7789999726889999999999999999999999999998558789----999999999999999999999999985472
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEC-CHHHH
Q ss_conf 78999999999999999999984101234666787300207999999999999999876344646687775226-97673
Q gi|254780323|r 342 FTSAIITPLMILITGGGFFVFVIFEDALLPFTEDVIKLVPLALAVFLGSLQNVLSKATKYTMFDSTKEMAFIPL-DDEFR 420 (491)
Q Consensus 342 ~~~l~i~Pi~~li~~~~ff~~~~~~~~~~~~~~~~~~~~~l~~~v~~~~i~~~~~k~~kYsl~~p~~E~l~~pl-~~~~R 420 (491)
T Consensus 274 ~~~l~~G---~~l~~~g~~~~~~~~~~~~-----------~~i~~~lf--------tiGe~l~~P~~~s~va~lap~~~r 331 (400)
T PRK11646 274 EHRLMAG---LLIMSLSMFPIGMVSNLQQ-----------LFTLICLF--------YIGSIIAEPARETLSASLADARAR 331 (400)
T ss_pred HHHHHHH---HHHHHHHHHHHHHHHHHHH-----------HHHHHHHH--------HHHHHHHHHHHHHHHHHHCCCCCE
T ss_conf 9999999---9999999999999988999-----------99999999--------999999975489999983896543
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH
Q ss_conf 6577767888764667779999999999830000233379999999999----99999999997089
Q gi|254780323|r 421 TKGKAVVDVIGGRMAKSGGAVIQSFIFMLFPMATFSSIVPYLAVFFLCL----MFIWIYVVNQLSKE 483 (491)
Q Consensus 421 ~k~K~~iD~~~~r~Gk~~gs~~~~~l~~~~~~~~~~~~~~~~~~~~i~i----~~~Wi~~~~~L~~~ 483 (491)
T Consensus 332 G~y~G~~-~~~~~lG~~~Gp~~gG~L~d~~~~-~~~p~~~W~~~~~~~~l~~~~l~~~~~~~~~~~~ 396 (400)
T PRK11646 332 GSYMGFS-RLGLALGGAIGYIGGGWLFDLGKA-LHQPELPWMMLGIIGIITLLALGWQFSQKRIARR 396 (400)
T ss_pred EHHHHHH-HHHHHHHHHHHHHHHHHHHHCCCC-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 2376299-999999999889899999955302-4898579999999999999999999989999865