HHsearch alignment for GI: 254780323 and conserved domain: PRK11646
>PRK11646 multidrug resistance protein MdtH; Provisional.
Probab=97.27 E-value=0.022 Score=36.63 Aligned_cols=253 Identities=13% Similarity=0.067 Sum_probs=109.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
Q ss_conf 999999999999999999877886512485446799999--999999999999999996338999999999999999999
Q gi|254780323|r 31 PMTLMMFLVLFNFSTLRPIKDSLVVPHMGAEIISFVKLW--CVFPSAILFTILYMKLSNILETEKLFYVVVSFFVSFFAI 108 (491)
Q Consensus 31 ~~~~~~F~i~~~y~~lr~~rd~l~~~~~g~e~lp~l~~~--~~l~~s~~~~~~y~~l~~~~~~~~l~~~~~~~f~~~~~~ 108 (491)
T Consensus 101 ~l~~~~~l~G~g~~~~~pa~~Aliad~t~~~~R~~~f~l~~~a~niG~~iGpllGg~l~~~~~~~~f~~~a~~~~l~~~- 179 (400)
T PRK11646 101 LLWFSCILSGLGGTLFDPPRSALVIKLIRPQQRGRFFSLLMMQDSAGAVIGALLGSWLLQYDFRLVCATGAVLFVLAAA- 179 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_conf 9999999999985646799999999708876899999999999999999999999999986489999999999999999-
Q ss_pred HHHHHHHCCCCCCCCH---HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH
Q ss_conf 9999842100146523---4555531010134457876555799999999999999999999999998640989989999
Q gi|254780323|r 109 FAFLLYPYRDFLHPSP---ESIRALASSWPYLKWFIYLAGKWSFALFYVFAELWGAVMINLMFWQFANRITKTEEATRFY 185 (491)
Q Consensus 109 f~~~l~p~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~w~~~~fYv~~e~~~~~vis~~FW~~~n~~f~~~qaKRlf 185 (491)
T Consensus 180 ~~~~~~p~~~~~~~~~~~~~~~~~vl~dr~f~~~~l------~~~~~~~~~~q~-~~~lp----l~~~~~~~~---~~~~ 245 (400)
T PRK11646 180 FNAWLLPAYKLSTVRTPVREGMTRVLRDKRFVTYVL------TLAGYYMLAVQV-MLMLP----IMVNDIAGS---PSAV 245 (400)
T ss_pred HHHHHCCCCCCCCCCCCHHHHHHHHHCCHHHHHHHH------HHHHHHHHHHHH-HHHHH----HHHHHHCCC---HHHH
T ss_conf 999957866666667636778999972688999999------999999999999-99999----999985587---8999
Q ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHH
Q ss_conf 999989-9999999889999996301232248999999999999999999999840245223320000112345788899
Q gi|254780323|r 186 ATFGLV-GNVGLIFAGGIVKTFSKLTNELMIYYSMLTLILSSILLMAVYRWMNLYVLTDPQQYSPKRGSVKKKLKLSVLE 264 (491)
Q Consensus 186 ~li~~g-~~ig~i~gg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (491)
T Consensus 246 g~l~~~~~~v~v~lq~pl~~~~~kr~~~~~~l~~G~~l~~~g~~~~---------------------------------- 291 (400)
T PRK11646 246 KWMYAIEACLSLTLLYPIARWSEKRFRLEHRLMAGLLIMSLSMFPI---------------------------------- 291 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH----------------------------------
T ss_conf 9999999999999999999999985472999999999999999999----------------------------------
Q ss_pred HHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99998309679999999999999999999999999998329989999999999999999999999997899997
Q gi|254780323|r 265 SLRMALNSKYLGYLVLLVICYGTAINLVEGPWKEKVRQLYPTQNSYAQFMGQFIQWTGIVTIVFMILGSNILKS 338 (491)
Q Consensus 265 ~~k~i~~s~yL~~l~~~v~~~~~~~tl~e~~~k~~~~~~~~~~~~~~af~g~~~~~v~i~tii~qll~~~ll~r 338 (491)
T Consensus 292 ---~~~~~--~~~~~i~~~lftiGe~l~~P~~~s~va~la-p~~~rG~y~G~~~~~~~lG~~~Gp~~gG~L~d~ 359 (400)
T PRK11646 292 ---GMVSN--LQQLFTLICLFYIGSIIAEPARETLSASLA-DARARGSYMGFSRLGLALGGAIGYIGGGWLFDL 359 (400)
T ss_pred ---HHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf ---99988--999999999999999999754899999838-965432376299999999999889899999955