HHsearch alignment for GI: 254780323 and conserved domain: PRK11902
>PRK11902 ampG muropeptide transporter; Reviewed.
Probab=96.29 E-value=0.1 Score=31.23 Aligned_cols=275 Identities=12% Similarity=0.091 Sum_probs=124.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH-CCHHHHHHHHHHHHH
Q ss_conf 79999999999999999999987788651248544679999---99999999999999999963-389999999999999
Q gi|254780323|r 28 KFIPMTLMMFLVLFNFSTLRPIKDSLVVPHMGAEIISFVKL---WCVFPSAILFTILYMKLSNI-LETEKLFYVVVSFFV 103 (491)
Q Consensus 28 ~~~~~~~~~F~i~~~y~~lr~~rd~l~~~~~g~e~lp~l~~---~~~l~~s~~~~~~y~~l~~~-~~~~~l~~~~~~~f~ 103 (491)
T Consensus 93 ~~~~l~~~~~l~af~sAtqDIA~Da~~ie~l~~~e~g~~n~~~v~Gyr~g~ligGg~~l~l~~~~~gW~~~~~~la~l~l 172 (402)
T PRK11902 93 ALWPLALLAVLVAFLSASQDIVFDAYSTDVLRPEERGAGAAVKVLGYRLAMLVSGGLALILADRVLGWGNTYLLMAGLML 172 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 79999999999999999999999899998559988999999999999999999899999999988869999999999999
Q ss_pred HHHHHHHHHHHHCCCCCCCCHHHHHHHHCCHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHCCHH
Q ss_conf 9999999998421001465234555531010134457876---55579999999999999999999999999-8640989
Q gi|254780323|r 104 SFFAIFAFLLYPYRDFLHPSPESIRALASSWPYLKWFIYL---AGKWSFALFYVFAELWGAVMINLMFWQFA-NRITKTE 179 (491)
Q Consensus 104 ~~~~~f~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~w~~~~fYv~~e~~~~~vis~~FW~~~-n~~f~~~ 179 (491)
T Consensus 173 l~~--~~~l~~~e~~~~~~~~~~~~~--~~~~~~~~f~~r~~~~~~l~fillyrlgd~~~~~m~~-pFl--l~dlG~s~~ 245 (402)
T PRK11902 173 AGA--LTTLWAPEPEVPARAPRSLGE--AVVGPLRDFFSRRGAWWLLLLIVLYKLGDAFAGSLST-TFL--IRGAGFSAG 245 (402)
T ss_pred HHH--HHHHHCCCCCCCCCCCHHHHH--HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH-HHH--HHHCCCCHH
T ss_conf 999--999928887754424103789--9999999999726799999999999989999999878-999--975299999
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
Q ss_conf 98999999998999-99999889999996301232248999999999999999999999840245223320000112345
Q gi|254780323|r 180 EATRFYATFGLVGN-VGLIFAGGIVKTFSKLTNELMIYYSMLTLILSSILLMAVYRWMNLYVLTDPQQYSPKRGSVKKKL 258 (491)
Q Consensus 180 qaKRlf~li~~g~~-ig~i~gg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (491)
T Consensus 246 ~ig~~~~~~G~~a~i~G~~lGG~l~~r~g~----~~~L~~~~~~~---~l~~l~~~~la~~------------------- 299 (402)
T PRK11902 246 EVGIVNKTLGLAATIVGALAGGSLMVRLGL----YRSLMLFGVLQ---AVSNLGYWLLAVT------------------- 299 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHH---HHHHHHHHHHHHC-------------------
T ss_conf 999998799999999999999999999738----99999999999---9999999999966-------------------
Q ss_pred CCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 78889999998309679999999999999999999999999998329989999999999999999999999997899997
Q gi|254780323|r 259 KLSVLESLRMALNSKYLGYLVLLVICYGTAINLVEGPWKEKVRQLYPTQNSYAQFMGQFIQWTGIVTIVFMILGSNILKS 338 (491)
Q Consensus 259 ~~~~~~~~k~i~~s~yL~~l~~~v~~~~~~~tl~e~~~k~~~~~~~~~~~~~~af~g~~~~~v~i~tii~qll~~~ll~r 338 (491)
T Consensus 300 ~-----------~~~~~--l~~~i~~~~~~~g~~~~a~~a~~m~l~-~~~~~atqyal~~sl~~l~~~~~~~~sG~la~~ 365 (402)
T PRK11902 300 P-----------KHLWL--MGLAIGVENLCGGMGTAAFVALLMALC-NRSFSATQYALLSALASVGRVYVGPTSGYLVEA 365 (402)
T ss_pred C-----------CCHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 7-----------75799--999999999999999999999999982-886639999999999999899988439999998
Q ss_pred HHHHHHHHHHH
Q ss_conf 31678999999
Q gi|254780323|r 339 FRWFTSAIITP 349 (491)
Q Consensus 339 ~G~~~~l~i~P 349 (491)
T Consensus 366 ~Gy~~fFi~~~ 376 (402)
T PRK11902 366 LGWPGFYLGTV 376 (402)
T ss_pred HCCHHHHHHHH
T ss_conf 19699999999