HHsearch alignment for GI: 254780323 and conserved domain: TIGR00880
>TIGR00880 2_A_01_02 Multidrug resistance protein; InterPro: IPR004734 Multidrug resistance proteins are molecular pumps that participate in a low energy shock adaptive response in some bacteria. They mediate cellular resistance to toxicants such as cycloheximide (CYH), 4-nitroquinoline N-oxide (4-NQO), cadmium, and hydrogen peroxide in yeast .; GO: 0015238 drug transporter activity, 0015893 drug transport, 0016021 integral to membrane.
Probab=97.42 E-value=0.015 Score=37.87 Aligned_cols=108 Identities=14% Similarity=0.091 Sum_probs=84.5
Q ss_pred HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999633899999999999999999999998421001465234555531010134457876555799999999
Q gi|254780323|r 76 ILFTILYMKLSNILETEKLFYVVVSFFVSFFAIFAFLLYPYRDFLHPSPESIRALASSWPYLKWFIYLAGKWSFALFYVF 155 (491)
Q Consensus 76 ~~~~~~y~~l~~~~~~~~l~~~~~~~f~~~~~~f~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~fYv~ 155 (491)
T Consensus 12 ~~~~P~~~~l~~r~GRk~~~~~g~~~f~~~~~~~al~n-P-h~--------------------------~~~~L~i~R~~ 63 (148)
T TIGR00880 12 LIYSPLSGLLTDRFGRKPVLLVGLFIFVLSQALFALSN-P-HS--------------------------NITVLIISRFL 63 (148)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCC-C-CH--------------------------HHHHHHHHHHH
T ss_conf 99999999988421628999999999999999988448-7-23--------------------------79999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHCCC
Q ss_conf 999999999999999998640989-9899999999899999999889999996---30123
Q gi|254780323|r 156 AELWGAVMINLMFWQFANRITKTE-EATRFYATFGLVGNVGLIFAGGIVKTFS---KLTNE 212 (491)
Q Consensus 156 ~e~~~~~vis~~FW~~~n~~f~~~-qaKRlf~li~~g~~ig~i~gg~~~~~l~---~~~~~ 212 (491)
T Consensus 64 ~G~~~~~~~~~-g~a~~aD~~~~~~~~~~a~g~~~~~~~~g~~lgP~~G~~~~~~~~~~~w 123 (148)
T TIGR00880 64 QGFGAAAALVA-GAALIADIYPPEEERSVALGLMSAGIALGPILGPPLGGVLANVKQALGW 123 (148)
T ss_pred HHHHHHHHHHH-HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 99988899998-9888877426404788999999999999999999998999875540176