HHsearch alignment of GI: 254780323 and MMDB domain: 2cfq_A_
>2cfq_A (A:) Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli}
Probab=98.07 E-value=0.0016 Score=45.12 Aligned_cols=147 Identities=12% Similarity=0.014 Sum_probs=85.2
Q ss_pred HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 99998640989989999999989999999988999999630123224899999999999999999999984024522332
Q gi|254780323|r 169 WQFANRITKTEEATRFYATFGLVGNVGLIFAGGIVKTFSKLTNELMIYYSMLTLILSSILLMAVYRWMNLYVLTDPQQYS 248 (491)
Q Consensus 169 W~~~n~~f~~~qaKRlf~li~~g~~ig~i~gg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 248 (491)
+.......+........+.+...+.++.+++......+.++.+..............+.... .
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~--~--------------- 307 (417)
T 2cfq_A 245 NFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGS--S--------------- 307 (417)
T ss_dssp HHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH--T---------------
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHH--C---------------
T ss_conf 11100012222222222222210001111122012222222222111046678999886400--0---------------
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH-HHHHH
Q ss_conf 00001123457888999999830967999999999999999999999999999832998999999999999999-99999
Q gi|254780323|r 249 PKRGSVKKKLKLSVLESLRMALNSKYLGYLVLLVICYGTAINLVEGPWKEKVRQLYPTQNSYAQFMGQFIQWTG-IVTIV 327 (491)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~k~i~~s~yL~~l~~~v~~~~~~~tl~e~~~k~~~~~~~~~~~~~~af~g~~~~~v~-i~tii 327 (491)
...++. .+....++.++............+.+..| ++++...+|..+...+ +-..+
T Consensus 308 --------------------~~~~~~--~~~~~~~l~g~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~lg~~~ 364 (417)
T 2cfq_A 308 --------------------FATSAL--EVVILKTLHMFEVPFLLVGCFKYITSQFE-VRFSATIYLVCFCFFKQLAMIF 364 (417)
T ss_dssp --------------------TCCSHH--HHHHHTTHHHHHHHHHHHHHHHHHHHHSC-HHHHHHHHHHHHTTTHHHHHHH
T ss_pred --------------------CCCCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHHHHHHH
T ss_conf --------------------111117--88999999999999999999999999879-7389999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999789999731678999999999999
Q gi|254780323|r 328 FMILGSNILKSFRWFTSAIITPLMILIT 355 (491)
Q Consensus 328 ~qll~~~ll~r~G~~~~l~i~Pi~~li~ 355 (491)
-..+.+.+.+++|+.....+.-.+.++.
T Consensus 365 g~~~~g~l~~~~g~~~~~~~~~~~~~~~ 392 (417)
T 2cfq_A 365 MSVLAGNMYESIGFQGAYLVLGLVALGF 392 (417)
T ss_dssp HTHHHHTHHHHSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_conf 9999999999979899999999999999