Query gi|254780323|ref|YP_003064736.1| ATP/ADP translocase [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 491
No_of_seqs 146 out of 477
Neff 8.3
Searched_HMMs 33803
Date Wed Jun 1 12:25:14 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780323.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 >2cfq_A Lactose permease; tran 99.3 7.2E-09 2.1E-13 87.2 21.5 371 22-451 2-377 (417)
2 >2gfp_A EMRD, multidrug resist 98.8 2.9E-06 8.5E-11 66.7 17.8 343 29-442 2-345 (375)
3 >1pw4_A Glycerol-3-phosphate t 98.5 0.00021 6.3E-09 51.9 22.7 164 25-216 21-187 (222)
4 >1pw4_A Glycerol-3-phosphate t 98.4 0.00016 4.8E-09 52.9 18.6 155 29-212 30-184 (229)
5 >1pw4_A Glycerol-3-phosphate t 98.3 0.00053 1.6E-08 48.8 21.3 208 261-490 11-218 (222)
6 >2cfq_A Lactose permease; tran 98.1 0.0016 4.6E-08 45.1 17.6 147 169-355 245-392 (417)
7 >1pw4_A Glycerol-3-phosphate t 93.7 0.46 1.4E-05 25.6 17.4 119 314-450 64-182 (229)
8 >1kf6_D Fumarate reductase 13 33.2 20 0.00058 12.8 1.9 31 177-207 7-37 (119)
9 >3b60_A Lipid A export ATP-bin 27.3 24 0.00071 12.1 11.0 81 261-341 12-94 (116)
10 >2r7r_A RNA-dependent RNA poly 20.9 17 0.00051 13.2 -0.7 25 397-421 12-36 (86)
No 1
>>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} (A:)
Probab=99.27 E-value=7.2e-09 Score=87.24 Aligned_cols=371 Identities=11% Similarity=0.114 Sum_probs=196.5
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
Q ss_conf 81123279999999999999999999987788651248--5446799999999999999999999996338999999999
Q gi|254780323|r 22 KMSEAKKFIPMTLMMFLVLFNFSTLRPIKDSLVVPHMG--AEIISFVKLWCVFPSAILFTILYMKLSNILETEKLFYVVV 99 (491)
Q Consensus 22 ~~~E~~~~~~~~~~~F~i~~~y~~lr~~rd~l~~~~~g--~e~lp~l~~~~~l~~s~~~~~~y~~l~~~~~~~~l~~~~~ 99 (491)
++-+.|.+..+.+..|+..+++...-|.--....+..| +..+-.+.....+ ...+..+..+++.||++||+.+....
T Consensus 2 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l-~~~i~~~~~G~l~Dr~grr~~l~~~~ 80 (417)
T 2cfq_A 2 YYLKNTNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISL-FSLLFQPLFGLLSDKLGLRKYLLWII 80 (417)
T ss_dssp TTTSCHHHHHHHHHHHHHHHHHHHHTTTHHHHHHTTTCCCTTTSHHHHHHHHH-HHHHHHHHHHHHHTTSTTCCHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHCCHHHHHHHH
T ss_conf 97647069999999999999999999999999998029999999999999999-99999999999999817439999999
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--
Q ss_conf 999999999999984210014652345555310101344578765557999999999999999999999999986409--
Q gi|254780323|r 100 SFFVSFFAIFAFLLYPYRDFLHPSPESIRALASSWPYLKWFIYLAGKWSFALFYVFAELWGAVMINLMFWQFANRITK-- 177 (491)
Q Consensus 100 ~~f~~~~~~f~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~fYv~~e~~~~~vis~~FW~~~n~~f~-- 177 (491)
.........+.......... |......+........... .......+...
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~---------------------------~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 132 (417)
T 2cfq_A 81 TGMLVMFAPFFIFIFGPLLQ---------------------------YNILVGSIVGGIYLGFCFN-AGAPAVEAFIEKV 132 (417)
T ss_dssp HHTTSCHHHHHHHTHHHHHH---------------------------TTCCHHHHGGGSSTTHHHH-TTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHH---------------------------HHHHHHHHHHHCCCCCCCH-HHHHHHHHCCCCH
T ss_conf 99999877655311213678---------------------------8899888776302223312-4555432203312
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
Q ss_conf 89989999999989999999988999999630123224899999999999999999999984024522332000011234
Q gi|254780323|r 178 TEEATRFYATFGLVGNVGLIFAGGIVKTFSKLTNELMIYYSMLTLILSSILLMAVYRWMNLYVLTDPQQYSPKRGSVKKK 257 (491)
Q Consensus 178 ~~qaKRlf~li~~g~~ig~i~gg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (491)
.++..|.++....++++|..+|+.....+....+................... ......+++....+.+++++
T Consensus 133 ~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~ 205 (417)
T 2cfq_A 133 SRRSNFEFGRARMFGCVGWALGASIVGIMFTINNQFVFWLGSGCALILAVLLF-------FAKTDAPSSATVANAVGANH 205 (417)
T ss_dssp HHHHTCCHHHHSSSTTTHHHHHHHHHHHHHHHCSHHHHTTTTTTTTTHHHHSC-------SSCCCCSCSSCSSSSSSSCC
T ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH-------EECCCCCHHHHHHCCCCCCC
T ss_conf 45556666666665213334454323433234664211267777777654421-------01036730233210000113
Q ss_pred CCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 57888999999830967999999999999999999999999999832998999999999999999999999999789999
Q gi|254780323|r 258 LKLSVLESLRMALNSKYLGYLVLLVICYGTAINLVEGPWKEKVRQLYPTQNSYAQFMGQFIQWTGIVTIVFMILGSNILK 337 (491)
Q Consensus 258 ~~~~~~~~~k~i~~s~yL~~l~~~v~~~~~~~tl~e~~~k~~~~~~~~~~~~~~af~g~~~~~v~i~tii~qll~~~ll~ 337 (491)
.+ ...+..+...+..................................+...-....+.......+..++..++.+++.+
T Consensus 206 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 284 (417)
T 2cfq_A 206 SA-FSLKLALELFRQPKLWFLSLYVIGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIIN 284 (417)
T ss_dssp CC-CCHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CC-CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCC
T ss_conf 33-33322211222221036788899987653222332101110001222222222222221000111112201222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHEECC
Q ss_conf 7316789999999999999999999841012346667873002079999999999999998763446-466877752269
Q gi|254780323|r 338 SFRWFTSAIITPLMILITGGGFFVFVIFEDALLPFTEDVIKLVPLALAVFLGSLQNVLSKATKYTMF-DSTKEMAFIPLD 416 (491)
Q Consensus 338 r~G~~~~l~i~Pi~~li~~~~ff~~~~~~~~~~~~~~~~~~~~~l~~~v~~~~i~~~~~k~~kYsl~-~p~~E~l~~pl~ 416 (491)
|+|-+..+.+.-+...+.... ..... .. . ......+ + -..-++.. -+.....-.-.|
T Consensus 285 r~g~~~~~~~~~~~~~~~~~~---~~~~~-~~-------------~-~~~~~~~---l-~g~~~~~~~~~~~~~~~~~~~ 342 (417)
T 2cfq_A 285 RIGGKNALLLAGTIMSVRIIG---SSFAT-SA-------------L-EVVILKT---L-HMFEVPFLLVGCFKYITSQFE 342 (417)
T ss_dssp HHCHHHHHHHHHHHHHHHHHH---HTTCC-SH-------------H-HHHHHTT---H-HHHHHHHHHHHHHHHHHHHSC
T ss_pred CCCCCCCHHHHHHHHHHHHHH---HCCCC-CH-------------H-HHHHHHH---H-HHHHHHHHHHHHHHHHHHHCC
T ss_conf 222211104667899988640---00111-11-------------7-8899999---9-999999999999999999879
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 76736577767888764667779999999999830
Q gi|254780323|r 417 DEFRTKGKAVVDVIGGRMAKSGGAVIQSFIFMLFP 451 (491)
Q Consensus 417 ~~~R~k~K~~iD~~~~r~Gk~~gs~~~~~l~~~~~ 451 (491)
++.|.++.+....+...+|...|..+...+...++
T Consensus 343 ~~~~g~~~~~~~~~~~~lg~~~g~~~~g~l~~~~g 377 (417)
T 2cfq_A 343 VRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIG 377 (417)
T ss_dssp HHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 73899999999999999999999999999999979
No 2
>>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} (A:)
Probab=98.76 E-value=2.9e-06 Score=66.73 Aligned_cols=343 Identities=8% Similarity=-0.070 Sum_probs=173.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
Q ss_conf 999999999999999999998778865124-8544679999999999999999999999633899999999999999999
Q gi|254780323|r 29 FIPMTLMMFLVLFNFSTLRPIKDSLVVPHM-GAEIISFVKLWCVFPSAILFTILYMKLSNILETEKLFYVVVSFFVSFFA 107 (491)
Q Consensus 29 ~~~~~~~~F~i~~~y~~lr~~rd~l~~~~~-g~e~lp~l~~~~~l~~s~~~~~~y~~l~~~~~~~~l~~~~~~~f~~~~~ 107 (491)
+..+.+..|+........-+.-..+.-+-. +.+...++-....+ ...+..+..+++.+|++||+.+......+.+..+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~l~~i~~~l~~s~~~~~~~~s~~~l-~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~ 80 (375)
T 2gfp_A 2 LLMLVLLVAVGQMAQTIYIPAIADMARDLNVREGAVQSVMGAYLL-TYGVSQLFYGPISDRVGRRPVILVGMSIFMLATL 80 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHHH-HHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf 899999999999999999999999999979299999999999999-9999999999999980979999999999999986
Q ss_pred HHHHHHHHCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
Q ss_conf 99999842100146523455553101013445787655579999999999999999999999999864098998999999
Q gi|254780323|r 108 IFAFLLYPYRDFLHPSPESIRALASSWPYLKWFIYLAGKWSFALFYVFAELWGAVMINLMFWQFANRITKTEEATRFYAT 187 (491)
Q Consensus 108 ~f~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~fYv~~e~~~~~vis~~FW~~~n~~f~~~qaKRlf~l 187 (491)
+.++.- +.|.....-....+-+..... .-.++..|.+.++|..|..+.
T Consensus 81 ~~~~a~-------------------------------~~~~l~~~r~l~G~g~~~~~~-~~~~~i~~~~~~~~r~~~~~~ 128 (375)
T 2gfp_A 81 VAVTTS-------------------------------SLTVLIAASAMQGMGTGVGGV-MARTLPRDLYERTQLRHANSL 128 (375)
T ss_dssp HHHHHH-------------------------------HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHTSSCCSHHHH
T ss_pred HHCCCC-------------------------------CHHHHHHHHHHHHHHCCCCCC-CCCCCCCCCHHHHHHCCCCHH
T ss_conf 422487-------------------------------488998888777541033332-222222111023441221002
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf 99899999999889999996301232248999999999999999999999840245223320000112345788899999
Q gi|254780323|r 188 FGLVGNVGLIFAGGIVKTFSKLTNELMIYYSMLTLILSSILLMAVYRWMNLYVLTDPQQYSPKRGSVKKKLKLSVLESLR 267 (491)
Q Consensus 188 i~~g~~ig~i~gg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k 267 (491)
...+.++|.++|+.....+.+..+-.............. .. . .....+++..+.++.+++++.. .+
T Consensus 129 ~~~~~~~g~~~g~~~~~~l~~~~~w~~~f~~~~~~~~~~--~~-----~-~~~~~~~~~~~~~~~~~~~~~~---~~--- 194 (375)
T 2gfp_A 129 LNMGILVSPLLAPLIGGLLDTMWNWRACYLFLLVLCAGV--TF-----S-MARWMPETRPVDAPRTRLLTSY---KT--- 194 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHH--HC-----C-CCCSSCCCSTTTCCCCCTTTCS---TH---
T ss_pred HHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH--HH-----H-HHHHHCCCCCCCCCCCCCCCCC---CC---
T ss_conf 110123465446543444323567520346778889999--99-----9-9999604566434432211000---00---
Q ss_pred HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 98309679999999999999999999999999998329989999999999999999999999997899997316789999
Q gi|254780323|r 268 MALNSKYLGYLVLLVICYGTAINLVEGPWKEKVRQLYPTQNSYAQFMGQFIQWTGIVTIVFMILGSNILKSFRWFTSAII 347 (491)
Q Consensus 268 ~i~~s~yL~~l~~~v~~~~~~~tl~e~~~k~~~~~~~~~~~~~~af~g~~~~~v~i~tii~qll~~~ll~r~G~~~~l~i 347 (491)
..+++..........+.................+.+..+ ....+......+...++...+.+++.+|+|-+.....
T Consensus 195 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (375)
T 2gfp_A 195 -LFGNSGFNCYLLMLIGGLAGIAAFEACSGVLMGAVLGLS---SMTVSILFILPIPAAFFGAWFAGRPNKRFSTLMWQSV 270 (375)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHCSCSSHHHHHHH---HHHHHHHHHTHHHHHHHHHHHHHTTTTHHHHHHHHHH
T ss_pred -CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHH
T ss_conf -135706789999999888765456889999998774210---8899999999999999999999999987132469999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCHHHHHHHHHHH
Q ss_conf 99999999999999984101234666787300207999999999999999876344646687775226976736577767
Q gi|254780323|r 348 TPLMILITGGGFFVFVIFEDALLPFTEDVIKLVPLALAVFLGSLQNVLSKATKYTMFDSTKEMAFIPLDDEFRTKGKAVV 427 (491)
Q Consensus 348 ~Pi~~li~~~~ff~~~~~~~~~~~~~~~~~~~~~l~~~v~~~~i~~~~~k~~kYsl~~p~~E~l~~pl~~~~R~k~K~~i 427 (491)
.-.............. ...+.. ........-..-.+...|.-...-...+++.|..+-+..
T Consensus 271 ~~~~~~~~~~~~~~~~--------------~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (375)
T 2gfp_A 271 ICCLLAGLLMWIPDWF--------------GVMNVW-----TLLVPAALFFFGAGMLFPLATSGAMEPFPFLAGTAGALV 331 (375)
T ss_dssp HHHHHTSSSSSHHHHH--------------HHHHHH-----HHHHHHHHHHHHHHHTSSTTHHHHHTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH--------------HHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_conf 9999999999999998--------------777799-----999999999999999999999999876768999999999
Q ss_pred HHHHHHHHHHHHHHH
Q ss_conf 888764667779999
Q gi|254780323|r 428 DVIGGRMAKSGGAVI 442 (491)
Q Consensus 428 D~~~~r~Gk~~gs~~ 442 (491)
.... ..|-..|..+
T Consensus 332 ~~~~-~~g~~~~~~~ 345 (375)
T 2gfp_A 332 GGLQ-NIGSGVLASL 345 (375)
T ss_dssp HHHH-HHHHHCCSTT
T ss_pred HHHH-HHHHHHHHHH
T ss_conf 9999-9999999999
No 3
>>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} (A:230-451)
Probab=98.49 E-value=0.00021 Score=51.95 Aligned_cols=164 Identities=11% Similarity=-0.076 Sum_probs=102.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
Q ss_conf 23279999999999999999999987788651248--5446799999999999999999999996338999999999999
Q gi|254780323|r 25 EAKKFIPMTLMMFLVLFNFSTLRPIKDSLVVPHMG--AEIISFVKLWCVFPSAILFTILYMKLSNILETEKLFYVVVSFF 102 (491)
Q Consensus 25 E~~~~~~~~~~~F~i~~~y~~lr~~rd~l~~~~~g--~e~lp~l~~~~~l~~s~~~~~~y~~l~~~~~~~~l~~~~~~~f 102 (491)
..++++...+..|+....++..-..-...+.+..| .+...++.. .......+..++.+++.+|++|++.........
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~~-~~~~~~~i~~~~~g~l~d~~g~r~~~~~~~~~~ 99 (222)
T 1pw4_A 21 PNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYF-LYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFM 99 (222)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHH-HHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_conf 3428999999877778999988877667775102477777789999-999999987678899999854310269999999
Q ss_pred HHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH
Q ss_conf 99999999998421001465234555531010134457876555799999999999999999999999998640989989
Q gi|254780323|r 103 VSFFAIFAFLLYPYRDFLHPSPESIRALASSWPYLKWFIYLAGKWSFALFYVFAELWGAVMINLMFWQFANRITKTEEAT 182 (491)
Q Consensus 103 ~~~~~~f~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~fYv~~e~~~~~vis~~FW~~~n~~f~~~qaK 182 (491)
+............. ..+.|......+...+......+ ..+..+.|.+.+++..
T Consensus 100 ~~~~~~~~~~~~~~--------------------------~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~rg 152 (222)
T 1pw4_A 100 TLVTIATIVYWMNP--------------------------AGNPTVDMICMIVIGFLIYGPVM-LIGLHALELAPKKAAG 152 (222)
T ss_dssp HHHHHHHHHTTSCC--------------------------TTCHHHHHHHHHHHHHHHTHHHH-HHHHHHHHTSCTTHHH
T ss_pred HHHHHHHHHHHHHC--------------------------HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCHHHHH
T ss_conf 99999999999702--------------------------12399999999999999999999-9999999877998999
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHCCCCCHH
Q ss_conf 9999999899999999-889999996301232248
Q gi|254780323|r 183 RFYATFGLVGNVGLIF-AGGIVKTFSKLTNELMIY 216 (491)
Q Consensus 183 Rlf~li~~g~~ig~i~-gg~~~~~l~~~~~~~~~~ 216 (491)
+..|+....+++++.+ ++.....+.+..+.....
T Consensus 153 ~~~g~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ 187 (222)
T 1pw4_A 153 TAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGF 187 (222)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHH
T ss_conf 99999999999999999999999999985869999
No 4
>>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} (A:1-229)
Probab=98.41 E-value=0.00016 Score=52.86 Aligned_cols=155 Identities=7% Similarity=-0.034 Sum_probs=96.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999877886512485446799999999999999999999996338999999999999999999
Q gi|254780323|r 29 FIPMTLMMFLVLFNFSTLRPIKDSLVVPHMGAEIISFVKLWCVFPSAILFTILYMKLSNILETEKLFYVVVSFFVSFFAI 108 (491)
Q Consensus 29 ~~~~~~~~F~i~~~y~~lr~~rd~l~~~~~g~e~lp~l~~~~~l~~s~~~~~~y~~l~~~~~~~~l~~~~~~~f~~~~~~ 108 (491)
+..+.+.++.....+...-+....+.-.....+...++.....+ ...+..+..+++.+|+++|+.+......+.....+
T Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~-~~~~~~~~~g~~~d~~g~r~~~~~~~~l~~~~~~l 108 (229)
T 1pw4_A 30 FLGIFFGYAAYYLVRKNFALAMPYLVEQGFSRGDLGFALSGISI-AYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLF 108 (229)
T ss_dssp HHHHHHHHHHHHHHHTSHHHHHHHTTSSTTCSSCHHHHHHHHHH-HHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999999999809599999999999999-99999999999999819789999999999999999
Q ss_pred HHHHHHHCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
Q ss_conf 99998421001465234555531010134457876555799999999999999999999999998640989989999999
Q gi|254780323|r 109 FAFLLYPYRDFLHPSPESIRALASSWPYLKWFIYLAGKWSFALFYVFAELWGAVMINLMFWQFANRITKTEEATRFYATF 188 (491)
Q Consensus 109 f~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~fYv~~e~~~~~vis~~FW~~~n~~f~~~qaKRlf~li 188 (491)
+.+... ..-+.+...+........+...... ......|.+..++..+..++.
T Consensus 109 ~~~~~~---------------------------~~~~~~~~~~~~~l~g~~~~~~~~~-~~~~~~~~~~~~~rg~~~g~~ 160 (229)
T 1pw4_A 109 MGFVPW---------------------------ATSSIAVMFVLLFLCGWFQGMGWPP-CGRTMVHWWSQKERGGIVSVW 160 (229)
T ss_dssp HHHCHH---------------------------HHSSSSHHHHHHHHHHHHHHHTHHH-HHHHHHTTCTTTHHHHHHHHH
T ss_pred HHHHHH---------------------------HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHCCHHHHHHHHHHH
T ss_conf 999988---------------------------8889999999999998868988899-999999987987651466654
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 989999999988999999630123
Q gi|254780323|r 189 GLVGNVGLIFAGGIVKTFSKLTNE 212 (491)
Q Consensus 189 ~~g~~ig~i~gg~~~~~l~~~~~~ 212 (491)
.++.++|.++|+.+...+.+..+.
T Consensus 161 ~~~~~lG~~ig~~l~~~~~~~~~~ 184 (229)
T 1pw4_A 161 NCAHNVGGGIPPLLFLLGMAWFND 184 (229)
T ss_dssp HHHHHHHHTSHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 776788888776778888754335
No 5
>>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} (A:230-451)
Probab=98.31 E-value=0.00053 Score=48.80 Aligned_cols=208 Identities=7% Similarity=-0.060 Sum_probs=115.5
Q ss_pred CHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 88999999830967999999999999999999999999999832998999999999999999999999999789999731
Q gi|254780323|r 261 SVLESLRMALNSKYLGYLVLLVICYGTAINLVEGPWKEKVRQLYPTQNSYAQFMGQFIQWTGIVTIVFMILGSNILKSFR 340 (491)
Q Consensus 261 ~~~~~~k~i~~s~yL~~l~~~v~~~~~~~tl~e~~~k~~~~~~~~~~~~~~af~g~~~~~v~i~tii~qll~~~ll~r~G 340 (491)
......+.++++|.+..+.....+............-.+.++.+..+.+.+... ....++...+...+.+++.+|+|
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~---~~~~~~~~~i~~~~~g~l~d~~g 87 (222)
T 1pw4_A 11 AKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWA---YFLYEYAGIPGTLLCGWMSDKVF 87 (222)
T ss_dssp CTHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHH---HHHHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 135678887234289999998777789999888776677751024777777899---99999999987678899999854
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCHHHH
Q ss_conf 67899999999999999999998410123466678730020799999999999999987634464668777522697673
Q gi|254780323|r 341 WFTSAIITPLMILITGGGFFVFVIFEDALLPFTEDVIKLVPLALAVFLGSLQNVLSKATKYTMFDSTKEMAFIPLDDEFR 420 (491)
Q Consensus 341 ~~~~l~i~Pi~~li~~~~ff~~~~~~~~~~~~~~~~~~~~~l~~~v~~~~i~~~~~k~~kYsl~~p~~E~l~~pl~~~~R 420 (491)
-+....+......+............. .+.. ... +...+.-...-..+-+..-..-.-.+++.|
T Consensus 88 ~r~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~-~~~---~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r 151 (222)
T 1pw4_A 88 RGNRGATGVFFMTLVTIATIVYWMNPA------------GNPT-VDM---ICMIVIGFLIYGPVMLIGLHALELAPKKAA 151 (222)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHTTSCCT------------TCHH-HHH---HHHHHHHHHHTHHHHHHHHHHHHTSCTTHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHCH------------HHHH-HHH---HHHHHHHHHHHHHHHHHHHHHHHHCCHHHH
T ss_conf 310269999999999999999997021------------2399-999---999999999999999999999987799899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 6577767888764667779999999999830000233379999999999999999999970899998534
Q gi|254780323|r 421 TKGKAVVDVIGGRMAKSGGAVIQSFIFMLFPMATFSSIVPYLAVFFLCLMFIWIYVVNQLSKEYTQLISK 490 (491)
Q Consensus 421 ~k~K~~iD~~~~r~Gk~~gs~~~~~l~~~~~~~~~~~~~~~~~~~~i~i~~~Wi~~~~~L~~~y~~~i~~ 490 (491)
..+-++...+.+-.|-..+.++...+.. ..+.+.......++.++....+......-+++-++..+|
T Consensus 152 g~~~g~~~~~~~~~g~~~~~~~~~~~~~---~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 218 (222)
T 1pw4_A 152 GTAAGFTGLFGYLGGSVAASAIVGYTVD---FFGWDGGFMVMIGGSILAVILLIVVMIGEKRRHEQLLQE 218 (222)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH---SSCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
T ss_conf 9999999999999999999999999999---858699999999999999999999998303525678876
No 6
>>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} (A:)
Probab=98.07 E-value=0.0016 Score=45.12 Aligned_cols=147 Identities=12% Similarity=0.014 Sum_probs=85.2
Q ss_pred HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 99998640989989999999989999999988999999630123224899999999999999999999984024522332
Q gi|254780323|r 169 WQFANRITKTEEATRFYATFGLVGNVGLIFAGGIVKTFSKLTNELMIYYSMLTLILSSILLMAVYRWMNLYVLTDPQQYS 248 (491)
Q Consensus 169 W~~~n~~f~~~qaKRlf~li~~g~~ig~i~gg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 248 (491)
+.......+........+.+...+.++.+++......+.++.+..............+.... .
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~--~--------------- 307 (417)
T 2cfq_A 245 NFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGS--S--------------- 307 (417)
T ss_dssp HHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH--T---------------
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHH--C---------------
T ss_conf 11100012222222222222210001111122012222222222111046678999886400--0---------------
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH-HHHHH
Q ss_conf 00001123457888999999830967999999999999999999999999999832998999999999999999-99999
Q gi|254780323|r 249 PKRGSVKKKLKLSVLESLRMALNSKYLGYLVLLVICYGTAINLVEGPWKEKVRQLYPTQNSYAQFMGQFIQWTG-IVTIV 327 (491)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~k~i~~s~yL~~l~~~v~~~~~~~tl~e~~~k~~~~~~~~~~~~~~af~g~~~~~v~-i~tii 327 (491)
...++. .+....++.++............+.+..| ++++...+|..+...+ +-..+
T Consensus 308 --------------------~~~~~~--~~~~~~~l~g~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~lg~~~ 364 (417)
T 2cfq_A 308 --------------------FATSAL--EVVILKTLHMFEVPFLLVGCFKYITSQFE-VRFSATIYLVCFCFFKQLAMIF 364 (417)
T ss_dssp --------------------TCCSHH--HHHHHTTHHHHHHHHHHHHHHHHHHHHSC-HHHHHHHHHHHHTTTHHHHHHH
T ss_pred --------------------CCCCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHHHHHHH
T ss_conf --------------------111117--88999999999999999999999999879-7389999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999789999731678999999999999
Q gi|254780323|r 328 FMILGSNILKSFRWFTSAIITPLMILIT 355 (491)
Q Consensus 328 ~qll~~~ll~r~G~~~~l~i~Pi~~li~ 355 (491)
-..+.+.+.+++|+.....+.-.+.++.
T Consensus 365 g~~~~g~l~~~~g~~~~~~~~~~~~~~~ 392 (417)
T 2cfq_A 365 MSVLAGNMYESIGFQGAYLVLGLVALGF 392 (417)
T ss_dssp HTHHHHTHHHHSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_conf 9999999999979899999999999999
No 7
>>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} (A:1-229)
Probab=93.68 E-value=0.46 Score=25.62 Aligned_cols=119 Identities=6% Similarity=-0.153 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
Q ss_conf 99999999999999999978999973167899999999999999999998410123466678730020799999999999
Q gi|254780323|r 314 MGQFIQWTGIVTIVFMILGSNILKSFRWFTSAIITPLMILITGGGFFVFVIFEDALLPFTEDVIKLVPLALAVFLGSLQN 393 (491)
Q Consensus 314 ~g~~~~~v~i~tii~qll~~~ll~r~G~~~~l~i~Pi~~li~~~~ff~~~~~~~~~~~~~~~~~~~~~l~~~v~~~~i~~ 393 (491)
.+.......+...+.+++.+++.+|+|-+....+.-++..++...+.....+.... .. . .+..
T Consensus 64 ~~~~~~~~~~~~~~~~~~~g~~~d~~g~r~~~~~~~~l~~~~~~l~~~~~~~~~~~-------------~~-~---~~~~ 126 (229)
T 1pw4_A 64 LGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSI-------------AV-M---FVLL 126 (229)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHHSSS-------------SH-H---HHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HH-H---HHHH
T ss_conf 99999999999999999999999981978999999999999999999998888899-------------99-9---9999
Q ss_pred HHHHHHHHHHHHHHHHHHHEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999987634464668777522697673657776788876466777999999999983
Q gi|254780323|r 394 VLSKATKYTMFDSTKEMAFIPLDDEFRTKGKAVVDVIGGRMAKSGGAVIQSFIFMLF 450 (491)
Q Consensus 394 ~~~k~~kYsl~~p~~E~l~~pl~~~~R~k~K~~iD~~~~r~Gk~~gs~~~~~l~~~~ 450 (491)
.+.-...-....++--.+---.+++.|..+.+...+. ..+|-.+|+.+...+....
T Consensus 127 ~l~g~~~~~~~~~~~~~~~~~~~~~~rg~~~g~~~~~-~~lG~~ig~~l~~~~~~~~ 182 (229)
T 1pw4_A 127 FLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCA-HNVGGGIPPLLFLLGMAWF 182 (229)
T ss_dssp HHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHH-HHHHHTSHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
T ss_conf 9998868988899999999987987651466654776-7888887767788887543
No 8
>>1kf6_D Fumarate reductase 13 kDa hydrophobic protein; respiration, fumarate reductace, succinate dehydrogenase, complex II, quinol, quinone; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} (D:)
Probab=33.15 E-value=20 Score=12.78 Aligned_cols=31 Identities=23% Similarity=0.320 Sum_probs=22.4
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9899899999999899999999889999996
Q gi|254780323|r 177 KTEEATRFYATFGLVGNVGLIFAGGIVKTFS 207 (491)
Q Consensus 177 ~~~qaKRlf~li~~g~~ig~i~gg~~~~~l~ 207 (491)
+..+..-+-+++++||+.++++.+.++-.+.
T Consensus 7 KRS~EPi~WgLFgAGGm~~Al~~Pv~Ili~g 37 (119)
T 1kf6_D 7 KRSDEPVFWGLFGAGGMWSAIIAPVMILLVG 37 (119)
T ss_dssp CCCSHHHHHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred CCCCCCCHHEEECCCCHHHHHHHHHHHHHHH
T ss_conf 8778985121244660279999889999999
No 9
>>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} (A:1-116)
Probab=27.30 E-value=24 Score=12.07 Aligned_cols=81 Identities=7% Similarity=-0.160 Sum_probs=36.5
Q ss_pred CHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 8899999983096799999999999999999999999999983299--89999999999999999999999997899997
Q gi|254780323|r 261 SVLESLRMALNSKYLGYLVLLVICYGTAINLVEGPWKEKVRQLYPT--QNSYAQFMGQFIQWTGIVTIVFMILGSNILKS 338 (491)
Q Consensus 261 ~~~~~~k~i~~s~yL~~l~~~v~~~~~~~tl~e~~~k~~~~~~~~~--~~~~~af~g~~~~~v~i~tii~qll~~~ll~r 338 (491)
.++.-++.+.+.+-...++....+.....+...-.....+-+.... +.+.............++..++.++.++...+
T Consensus 12 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~l~~~~~~~~~~~i~~~i~~~~~~~~~~~ 91 (116)
T 3b60_A 12 TFRRLWPTIAPFKAGLIVAGIALILNAASDTFMLSLLKPLLDDGFGKTDRSVLLWMPLVVIGLMILRGITSYISSYCISW 91 (116)
T ss_dssp HHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHSSTTSTTHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999999999999999999999999987347877899999999999999999999999999999
Q ss_pred HHH
Q ss_conf 316
Q gi|254780323|r 339 FRW 341 (491)
Q Consensus 339 ~G~ 341 (491)
.|-
T Consensus 92 ~~~ 94 (116)
T 3b60_A 92 VSG 94 (116)
T ss_dssp HHH
T ss_pred HHH
T ss_conf 999
No 10
>>2r7r_A RNA-dependent RNA polymerase; viral protein, RNA-dependent RNA polymerase, single subunit polymerase fold, fingers, PALM, thumb; 2.60A {Simian rotavirus} PDB: 2r7q_A 2r7s_A 2r7t_A 2r7u_A 2r7v_A 2r7w_A* 2r7x_A* 2r7o_A (A:922-1007)
Probab=20.91 E-value=17 Score=13.24 Aligned_cols=25 Identities=12% Similarity=0.211 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHEECCHHHHH
Q ss_conf 9876344646687775226976736
Q gi|254780323|r 397 KATKYTMFDSTKEMAFIPLDDEFRT 421 (491)
Q Consensus 397 k~~kYsl~~p~~E~l~~pl~~~~R~ 421 (491)
-+.|||+.+|+.|-+|-.++..++.
T Consensus 12 lI~kYSVY~PsieElYkvis~~e~~ 36 (86)
T 2r7r_A 12 LISKYSVYKPSIEELYKVISLHENE 36 (86)
T ss_dssp HHHHHCSCCCCHHHHHHHHTSCHHH
T ss_pred HHHHCCCCCCCHHHHHHHHHHHHHH
T ss_conf 9986278779989999998750167
Done!