HHsearch results for GI: 254780323 and protein with PDBid: 2cfq_A
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A
Probab=99.13 E-value=8.7e-08 Score=77.50 Aligned_cols=367 Identities=11% Similarity=0.083 Sum_probs=173.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
Q ss_conf 327999999999999999999998778865124--854467999999999999999999999963389999999999999
Q gi|254780323|r 26 AKKFIPMTLMMFLVLFNFSTLRPIKDSLVVPHM--GAEIISFVKLWCVFPSAILFTILYMKLSNILETEKLFYVVVSFFV 103 (491)
Q Consensus 26 ~~~~~~~~~~~F~i~~~y~~lr~~rd~l~~~~~--g~e~lp~l~~~~~l~~s~~~~~~y~~l~~~~~~~~l~~~~~~~f~ 103 (491)
-|.++.+.+.+|+..+++...-|.=.....+.. +++.+-.+.....+ ...+..+..+++.||++|||.+........
T Consensus 6 n~~f~~l~~~~f~~~~~~~~~~~~l~~~l~~~~g~s~~~~G~i~s~~~l-~~~~~~~~~G~l~Dr~grr~~l~~~~~~~~ 84 (417)
T 2cfq_A 6 NTNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISL-FSLLFQPLFGLLSDKLGLRKYLLWIITGML 84 (417)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTTTHHHHHHTTTCCCTTTSHHHHHHHHH-HHHHHHHHHHHHHTTSTTCCHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf 6069999999999999999999999999998129999999999999999-999999999999998085399999999999
Q ss_pred HHHHHHHHHHHHCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH
Q ss_conf 99999999984210014652345555310101344578765557999999999999999999999999986409899899
Q gi|254780323|r 104 SFFAIFAFLLYPYRDFLHPSPESIRALASSWPYLKWFIYLAGKWSFALFYVFAELWGAVMINLMFWQFANRITKTEEATR 183 (491)
Q Consensus 104 ~~~~~f~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~fYv~~e~~~~~vis~~FW~~~n~~f~~~qaKR 183 (491)
+....+.......... .... +....... ........... +......-..++..+
T Consensus 85 ~~~~~~~~~~~~~~~~----------~~~~---~~~~~~~~----------~~~~~~~~~~~---~~~~~~~~~~~~~~~ 138 (417)
T 2cfq_A 85 VMFAPFFIFIFGPLLQ----------YNIL---VGSIVGGI----------YLGFCFNAGAP---AVEAFIEKVSRRSNF 138 (417)
T ss_dssp SCHHHHHHHTHHHHHH----------TTCC---HHHHGGGS----------STTHHHHTTHH---HHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHH----------HHHH---HHHHHHHC----------CCCCCCHHHHH---HHHCCCHHHHHHHHH
T ss_conf 9999999875405889----------9999---99998750----------00133226666---541010000167899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHH
Q ss_conf 99999989999999988999999630123224899999999999999999999984024522332000011234578889
Q gi|254780323|r 184 FYATFGLVGNVGLIFAGGIVKTFSKLTNELMIYYSMLTLILSSILLMAVYRWMNLYVLTDPQQYSPKRGSVKKKLKLSVL 263 (491)
Q Consensus 184 lf~li~~g~~ig~i~gg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (491)
..+....+++.+..+|+.....+....+.................. .......++..+.++ +++++.+....
T Consensus 139 ~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~-~~~~~~~~~~~ 210 (417)
T 2cfq_A 139 EFGRARMFGCVGWALGASIVGIMFTINNQFVFWLGSGCALILAVLL-------FFAKTDAPSSATVAN-AVGANHSAFSL 210 (417)
T ss_dssp CHHHHSSSTTTHHHHHHHHHHHHHHHCSHHHHTTTTTTTTTHHHHS-------CSSCCCCSCSSCSSS-SSSSCCCCCCH
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHH-------HHHCCCCCCHHHHHH-HHHHHCCCCCC
T ss_conf 9999999999999986555023100033027999999999987788-------740123210011211-22210222000
Q ss_pred HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999830967999999999999999999999999999832998999999999999999999999999789999731678
Q gi|254780323|r 264 ESLRMALNSKYLGYLVLLVICYGTAINLVEGPWKEKVRQLYPTQNSYAQFMGQFIQWTGIVTIVFMILGSNILKSFRWFT 343 (491)
Q Consensus 264 ~~~k~i~~s~yL~~l~~~v~~~~~~~tl~e~~~k~~~~~~~~~~~~~~af~g~~~~~v~i~tii~qll~~~ll~r~G~~~ 343 (491)
...+...+++................................+........+...........+...+.+++.+|.+.+.
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 290 (417)
T 2cfq_A 211 KLALELFRQPKLWFLSLYVIGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKN 290 (417)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCHHH
T ss_conf 10123334556788999999999999998777778888886301111101101344321001122222454310000378
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHEECCHHHHHH
Q ss_conf 999999999999999999984101234666787300207999999999999999876344646-6877752269767365
Q gi|254780323|r 344 SAIITPLMILITGGGFFVFVIFEDALLPFTEDVIKLVPLALAVFLGSLQNVLSKATKYTMFDS-TKEMAFIPLDDEFRTK 422 (491)
Q Consensus 344 ~l~i~Pi~~li~~~~ff~~~~~~~~~~~~~~~~~~~~~l~~~v~~~~i~~~~~k~~kYsl~~p-~~E~l~~pl~~~~R~k 422 (491)
...+.-.+..+ .......... . . ......+. -..-++...| ....+-.-.|++.|.+
T Consensus 291 ~~~~~~~~~~~---~~~~~~~~~~-~-------------~-~~~~~~~l----~g~~~~~~~~~~~~~~~~~~p~~~~~~ 348 (417)
T 2cfq_A 291 ALLLAGTIMSV---RIIGSSFATS-A-------------L-EVVILKTL----HMFEVPFLLVGCFKYITSQFEVRFSAT 348 (417)
T ss_dssp HHHHHHHHHHH---HHHHHTTCCS-H-------------H-HHHHHTTH----HHHHHHHHHHHHHHHHHHHSCHHHHHH
T ss_pred HHHHHHHHHHH---HHHHHHCCCC-H-------------H-HHHHHHHH----HHHHHHHHHHHHHHHHHHHCCHHHHHH
T ss_conf 99999999999---9988622466-9-------------9-99999999----999999999999999999879728999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 777678887646677799999999998
Q gi|254780323|r 423 GKAVVDVIGGRMAKSGGAVIQSFIFML 449 (491)
Q Consensus 423 ~K~~iD~~~~r~Gk~~gs~~~~~l~~~ 449 (491)
+-+....+...+|...|+.+...+...
T Consensus 349 ~~~~~~~~~~~~g~~ig~~~~G~l~~~ 375 (417)
T 2cfq_A 349 IYLVCFCFFKQLAMIFMSVLAGNMYES 375 (417)
T ss_dssp HHHHHHTTTHHHHHHHHTHHHHTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999999999999999999999999