HHSEARCH alignment of GI: 254780323 and SCOP domain: d1pv7a_

Alignment
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}
Probab=97.54  E-value=0.0038  Score=39.01  Aligned_cols=143  Identities=10%  Similarity=0.005  Sum_probs=77.7

Q ss_pred             HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf             64098998999999998999999998899999963012322489999999999999999999998402452233200001
Q gi|254780323|r  174 RITKTEEATRFYATFGLVGNVGLIFAGGIVKTFSKLTNELMIYYSMLTLILSSILLMAVYRWMNLYVLTDPQQYSPKRGS  253 (491)
Q Consensus       174 ~~f~~~qaKRlf~li~~g~~ig~i~gg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  253 (491)
                      ...+........+.......++.++++.....+.++.+.........  ...++.+....                    
T Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~--~~~~~~~~~~~--------------------  307 (417)
T d1pv7a_         250 FFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAG--TIMSVRIIGSS--------------------  307 (417)
T ss_dssp             SSSCHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHCHHHHHHHHH--HHHHHHHHHHH--------------------
T ss_pred             CCCCCCCCHHHHCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCHHHHH--HHHHHHHHCCC--------------------
T ss_conf             23333210000011222223322221024444200122210003657--88888652011--------------------


Q ss_pred             CCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH-HHHHHHHHHH
Q ss_conf             123457888999999830967999999999999999999999999999832998999999999999999-9999999997
Q gi|254780323|r  254 VKKKLKLSVLESLRMALNSKYLGYLVLLVICYGTAINLVEGPWKEKVRQLYPTQNSYAQFMGQFIQWTG-IVTIVFMILG  332 (491)
Q Consensus       254 ~~~~~~~~~~~~~k~i~~s~yL~~l~~~v~~~~~~~tl~e~~~k~~~~~~~~~~~~~~af~g~~~~~v~-i~tii~qll~  332 (491)
                                     ...++...  ....++.++............+.+..|+ +.+...+|......+ +...+...+.
T Consensus       308 ---------------~~~~~~~~--~~~~~l~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~i~~~~~  369 (417)
T d1pv7a_         308 ---------------FATSALEV--VILKTLHMFEVPFLLVGCFKYITSQFEV-RFSATIYLVCFCFFKQLAMIFMSVLA  369 (417)
T ss_dssp             ---------------TCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHSCG-GGHHHHHHHHHTTTHHHHHHHHHHHH
T ss_pred             ---------------CCCCCCHH--HHHHHHHHHHHHHHHHHHHHHHHHHCCH-HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             ---------------33221114--5789999999999999999999998798-48999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             899997316789999999999999
Q gi|254780323|r  333 SNILKSFRWFTSAIITPLMILITG  356 (491)
Q Consensus       333 ~~ll~r~G~~~~l~i~Pi~~li~~  356 (491)
                      +.+.+++|+..+..+.-.+.++..
T Consensus       370 G~l~~~~g~~~~~~~~~~~~~~~~  393 (417)
T d1pv7a_         370 GNMYESIGFQGAYLVLGLVALGFT  393 (417)
T ss_dssp             HHHHHHHCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHCHHHHHHHHHHHHHHHH
T ss_conf             999999798999999999999999


SCOP domain information

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]