RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddA 21,609 sequences; 6,263,737 total letters Searching..................................................done Query= gi|254780323|ref|YP_003064736.1| ATP/ADP translocase [Candidatus Liberibacter asiaticus str. psy62] (491 letters) >gnl|CDD|146045 pfam03219, TLC, TLC ATP/ADP transporter. Length = 491 Score = 601 bits (1552), Expect = e-172 Identities = 254/482 (52%), Positives = 349/482 (72%), Gaps = 10/482 (2%) Query: 13 KIWQVFCAVKMSEAKKFIPMTLMMFLVLFNFSTLRPIKDSLVVPHMGAEIISFVKLWCVF 72 K+ + + E KKF+PM LMMF +LFN++ LR IKDSLVV +GAE+I F+K+W V Sbjct: 10 KLRAILWPIHRHELKKFLPMALMMFCILFNYNILRDIKDSLVVTAIGAEVIPFLKVWGVL 69 Query: 73 PSAILFTILYMKLSNILETEKLFYVVVSFFVSFFAIFAFLLYPYRDFLHPSPESIRALAS 132 PSAILFTI+Y KLSN L EK+FY+++SFF+ FFA+FAF+LYP RD LHP+PE+ + L+ Sbjct: 70 PSAILFTIIYAKLSNRLSREKVFYIIISFFLVFFALFAFVLYPNRDILHPNPEADKLLSI 129 Query: 133 SWPYLKWFIYLAGKWSFALFYVFAELWGAVMINLMFWQFANRITKTEEATRFYATFGLVG 192 P KWFI + WS++LFY+ AELWG+V+++L+FWQFAN+IT EEA RFY FGL G Sbjct: 130 LPPGFKWFIAMVRNWSYSLFYIMAELWGSVVLSLLFWQFANQITTVEEAKRFYPLFGLGG 189 Query: 193 NVGLIFAGGIVKTFSKL----------TNELMIYYSMLTLILSSILLMAVYRWMNLYVLT 242 N+ LI +G I+ S L + E+ + Y M ++LS I+++ +YRW+N VLT Sbjct: 190 NLALIISGQIIVYLSNLIRKALPSGVDSWEVSLKYLMSIVVLSGIIIILLYRWINKNVLT 249 Query: 243 DPQQYSPKRGSVKKKLKLSVLESLRMALNSKYLGYLVLLVICYGTAINLVEGPWKEKVRQ 302 DP+ Y+ + KKK K+S+ ES + L+S+YL + +LVI YG +INLVE WK KV++ Sbjct: 250 DPRLYASAKKKKKKKPKMSLKESFKYLLSSRYLLLIAILVISYGISINLVEVVWKAKVKE 309 Query: 303 LYPTQNSYAQFMGQFIQWTGIVTIVFMILGSNILKSFRWFTSAIITPLMILITGGGFFVF 362 LYPT N Y FMG+F WTGIVTI+FM+LGSNI++ F W T+A+ITPL++LITG FF F Sbjct: 310 LYPTPNEYNAFMGKFSTWTGIVTILFMLLGSNIIRKFGWTTAALITPLVLLITGILFFSF 369 Query: 363 VIFEDALLPFTEDVIKLVPLALAVFLGSLQNVLSKATKYTMFDSTKEMAFIPLDDEFRTK 422 +IFE L PLALAV +G++QN+LSK+ KY++FD+TKEMA+IPLDDE +TK Sbjct: 370 IIFEKHLGGIFAGFFGTTPLALAVLIGAIQNILSKSAKYSLFDATKEMAYIPLDDELKTK 429 Query: 423 GKAVVDVIGGRMAKSGGAVIQSFIFMLFPMATFSSIVPYLAVFFLCLMFIWIYVVNQLSK 482 GKA +DVIG R+ KSGG++IQ + ++FP + +SI PYLAV F+ ++ +WI+ V L+K Sbjct: 430 GKAAIDVIGARLGKSGGSLIQQGLLIIFPTGSLASITPYLAVIFIVIIIVWIFAVKSLNK 489 Query: 483 EY 484 +Y Sbjct: 490 QY 491 >gnl|CDD|33015 COG3202, COG3202, ATP/ADP translocase [Energy production and conversion]. Length = 509 Score = 442 bits (1138), Expect = e-124 Identities = 241/488 (49%), Positives = 339/488 (69%), Gaps = 10/488 (2%) Query: 13 KIWQVFCAVKMSEAKKFIPMTLMMFLVLFNFSTLRPIKDSLVVPHMGAEIISFVKLWCVF 72 K+ ++ E KKF+P+ L+ F +LFN++ LR +KDSLVV GAE ISF+K W V Sbjct: 13 KLRSRLWPIRRYELKKFLPLALLFFCILFNYNLLRSLKDSLVVTRQGAESISFLKTWGVL 72 Query: 73 PSAILFTILYMKLSNILETEKLFYVVVSFFVSFFAIFAFLLYPYRDFLHPSPESIRALAS 132 PSA++FTI+Y KL NIL EK+FY+++ FF+ FFA+FAF++YPY+D LHP PE R L + Sbjct: 73 PSAVIFTIIYQKLLNILTREKVFYIILGFFLGFFALFAFVIYPYKDILHPDPEFSRDLFA 132 Query: 133 SWP-YLKWFIYLAGKWSFALFYVFAELWGAVMINLMFWQFANRITKTEEATRFYATFGLV 191 P +LKWFI + G+WS++LFY+ AELWG+++++L+FWQFAN IT EEA RFY FGL Sbjct: 133 DLPMFLKWFILIVGEWSYSLFYIMAELWGSLVLSLLFWQFANEITTIEEAKRFYPLFGLG 192 Query: 192 GNVGLIFAGGIVKTFSKL-------TNELMIYYSMLTLILSSILLMAVYRWMNLYVLTDP 244 N+ L+ +G + SK +L++ + +++ I+ + +YR++N VLTDP Sbjct: 193 ANISLLLSGEVTSWLSKHRDALASEFKDLLLQILFIVIVILGIIAILLYRYINRNVLTDP 252 Query: 245 QQYSPKRGSVKK-KLKLSVLESLRMALNSKYLGYLVLLVICYGTAINLVEGPWKEKVRQL 303 Y + KK KLKL ++ES +M L SKYLG + LLV+ YG +INLVEG WK +++L Sbjct: 253 LFYLRAKKKKKKKKLKLGLIESFKMILRSKYLGAIALLVLAYGVSINLVEGVWKSGIKEL 312 Query: 304 YPTQNSYAQFMGQFIQWTGIV-TIVFMILGSNILKSFRWFTSAIITPLMILITGGGFFVF 362 YPT N Y FMG+F WTG+V +VF+ GSN+++ WFT A+ITPL++LITG FF F Sbjct: 313 YPTTNEYTAFMGRFQIWTGVVSLVVFLFPGSNLIRRVGWFTGALITPLVMLITGVLFFGF 372 Query: 363 VIFEDALLPFTEDVIKLVPLALAVFLGSLQNVLSKATKYTMFDSTKEMAFIPLDDEFRTK 422 F +++ ++ PL LAV++G +QNVLSK TKY++FD+TKEMA+IPLD E+RTK Sbjct: 373 AFFNNSIGSIFGGILGSPPLVLAVYIGGIQNVLSKITKYSLFDATKEMAYIPLDPEYRTK 432 Query: 423 GKAVVDVIGGRMAKSGGAVIQSFIFMLFPMATFSSIVPYLAVFFLCLMFIWIYVVNQLSK 482 GKA VDVIGG++ KS G++IQS +F++FP A +I P LAV F+ + +WIY V L+K Sbjct: 433 GKAAVDVIGGKLGKSIGSLIQSLLFIIFPTADVRAISPVLAVIFIIICVLWIYAVKYLNK 492 Query: 483 EYTQLISK 490 EY I + Sbjct: 493 EYQAAIQR 500 >gnl|CDD|36935 KOG1724, KOG1724, KOG1724, SCF ubiquitin ligase, Skp1 component [Posttranslational modification, protein turnover, chaperones]. Length = 162 Score = 31.4 bits (71), Expect = 0.58 Identities = 24/101 (23%), Positives = 42/101 (41%), Gaps = 13/101 (12%) Query: 220 LTLILSSILLMAVYRWMNLYVLTDPQ----QYSPKRGSVKK------KLKLSVLESLRMA 269 L + S IL V W + DP + P+ + + K+ L L +A Sbjct: 48 LPNVTSKILKK-VIEWCKKHKDDDPANPEDKELPEETDIPEWDAEFLKVDQGTLFDLILA 106 Query: 270 LNSKYLGYLVLLVICYGTAINLVEGPWKEKVRQLYPTQNSY 310 N YL LL + T N+++G E++R+++ +N Sbjct: 107 AN--YLDIKGLLDLTCKTVANMIKGKTPEEIREIFNIENDE 145 >gnl|CDD|133019 cd02538, G1P_TT_short, G1P_TT_short is the short form of glucose-1-phosphate thymidylyltransferase. This family is the short form of glucose-1-phosphate thymidylyltransferase. Glucose-1-phosphate thymidylyltransferase catalyses the formation of dTDP-glucose, from dTTP and glucose 1-phosphate. It is the first enzyme in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.There are two forms of Glucose-1-phosphate thymidylyltransferase in bacteria and archeae; short form and long form. The homotetrameric, feedback inhibited short form is found in numerous bacterial species that produce dTDP-L-rhamnose. The long form, which has an extra 50 amino acids c-terminal, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced. Length = 240 Score = 28.7 bits (65), Expect = 4.3 Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 11/44 (25%) Query: 195 GLIFAGG-------IVKTFSK----LTNELMIYYSMLTLILSSI 227 G+I AGG + K SK + ++ MIYY + TL+L+ I Sbjct: 3 GIILAGGSGTRLYPLTKVVSKQLLPVYDKPMIYYPLSTLMLAGI 46 >gnl|CDD|34598 COG4993, Gcd, Glucose dehydrogenase [Carbohydrate transport and metabolism]. Length = 773 Score = 28.4 bits (63), Expect = 4.3 Identities = 16/58 (27%), Positives = 21/58 (36%), Gaps = 12/58 (20%) Query: 129 ALASSWPYL---------KWFIYL---AGKWSFALFYVFAELWGAVMINLMFWQFANR 174 AL SW YL W + A W +AL + +W + FWQ R Sbjct: 26 ALGGSWYYLIAGLVLLLSAWLLLRRKRAALWLYALVLLGTLVWAVWEVGFDFWQLGPR 83 >gnl|CDD|34800 COG5201, SKP1, SCF ubiquitin ligase, SKP1 component [Posttranslational modification, protein turnover, chaperones]. Length = 158 Score = 28.1 bits (62), Expect = 5.4 Identities = 17/102 (16%), Positives = 36/102 (35%), Gaps = 8/102 (7%) Query: 217 YSMLTLILSSILLMAVYRWMNLYVLTDPQQYSPKRGSVKKKLKLSVLESLR--------M 268 Y + + S +LM V WM + + + + K + + Sbjct: 39 YPIPAPNVRSSVLMKVQEWMEHHTSSLSEDENDLEIRKSKPSDFWDRFFMEVDQEMLLEI 98 Query: 269 ALNSKYLGYLVLLVICYGTAINLVEGPWKEKVRQLYPTQNSY 310 L + YL LL + ++ G E++R+ + +N + Sbjct: 99 CLAANYLEIKPLLDLGCKIVAEMIRGKSPEEIRETFNIENDF 140 >gnl|CDD|177252 MTH00209, ND5, NADH dehydrogenase subunit 5; Provisional. Length = 564 Score = 27.7 bits (62), Expect = 7.4 Identities = 23/159 (14%), Positives = 55/159 (34%), Gaps = 15/159 (9%) Query: 333 SNILKSFRWFTSAIITPLMILITGGGFFVFVIFEDALLPFTEDVIKLVPLALAVFLGSLQ 392 ++ + ++ + ITGG +V+ +KL+P+ L +F L Sbjct: 406 NSSFDQNKLNLKPMLVLTLGSITGGSVMSWVMVPSVNSVVLPWFLKLLPIMLILFGVLLM 465 Query: 393 NVLSKAT-----KYTMFDSTKEMAFIP-------LDDEFRTKGKAVVDVIGGRMAKSGGA 440 ++ K Y + +M F+P + + + G + K G Sbjct: 466 YMVLKKNFFLIKGYKVNYFLSQMWFLPDLSSQPVNKFTMKLSKTMLKLLDQGWVEKMSGQ 525 Query: 441 ---VIQSFIFMLFPMATFSSIVPYLAVFFLCLMFIWIYV 476 + L + +S+ ++ L L+ + +++ Sbjct: 526 GSFKVLKKSSKLSQIIQNNSLKLFVTFMMLILLGVILFM 564 Database: CddA Posted date: Feb 4, 2011 9:38 PM Number of letters in database: 6,263,737 Number of sequences in database: 21,609 Lambda K H 0.331 0.142 0.436 Gapped Lambda K H 0.267 0.0758 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21609 Number of Hits to DB: 6,100,314 Number of extensions: 349520 Number of successful extensions: 1893 Number of sequences better than 10.0: 1 Number of HSP's gapped: 1836 Number of HSP's successfully gapped: 202 Length of query: 491 Length of database: 6,263,737 Length adjustment: 98 Effective length of query: 393 Effective length of database: 4,146,055 Effective search space: 1629399615 Effective search space used: 1629399615 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.9 bits) S2: 59 (26.4 bits)