RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddA 
           21,609 sequences; 6,263,737 total letters

Searching..................................................done

Query= gi|254780323|ref|YP_003064736.1| ATP/ADP translocase
[Candidatus Liberibacter asiaticus str. psy62]
         (491 letters)



>gnl|CDD|146045 pfam03219, TLC, TLC ATP/ADP transporter. 
          Length = 491

 Score =  601 bits (1552), Expect = e-172
 Identities = 254/482 (52%), Positives = 349/482 (72%), Gaps = 10/482 (2%)

Query: 13  KIWQVFCAVKMSEAKKFIPMTLMMFLVLFNFSTLRPIKDSLVVPHMGAEIISFVKLWCVF 72
           K+  +   +   E KKF+PM LMMF +LFN++ LR IKDSLVV  +GAE+I F+K+W V 
Sbjct: 10  KLRAILWPIHRHELKKFLPMALMMFCILFNYNILRDIKDSLVVTAIGAEVIPFLKVWGVL 69

Query: 73  PSAILFTILYMKLSNILETEKLFYVVVSFFVSFFAIFAFLLYPYRDFLHPSPESIRALAS 132
           PSAILFTI+Y KLSN L  EK+FY+++SFF+ FFA+FAF+LYP RD LHP+PE+ + L+ 
Sbjct: 70  PSAILFTIIYAKLSNRLSREKVFYIIISFFLVFFALFAFVLYPNRDILHPNPEADKLLSI 129

Query: 133 SWPYLKWFIYLAGKWSFALFYVFAELWGAVMINLMFWQFANRITKTEEATRFYATFGLVG 192
             P  KWFI +   WS++LFY+ AELWG+V+++L+FWQFAN+IT  EEA RFY  FGL G
Sbjct: 130 LPPGFKWFIAMVRNWSYSLFYIMAELWGSVVLSLLFWQFANQITTVEEAKRFYPLFGLGG 189

Query: 193 NVGLIFAGGIVKTFSKL----------TNELMIYYSMLTLILSSILLMAVYRWMNLYVLT 242
           N+ LI +G I+   S L          + E+ + Y M  ++LS I+++ +YRW+N  VLT
Sbjct: 190 NLALIISGQIIVYLSNLIRKALPSGVDSWEVSLKYLMSIVVLSGIIIILLYRWINKNVLT 249

Query: 243 DPQQYSPKRGSVKKKLKLSVLESLRMALNSKYLGYLVLLVICYGTAINLVEGPWKEKVRQ 302
           DP+ Y+  +   KKK K+S+ ES +  L+S+YL  + +LVI YG +INLVE  WK KV++
Sbjct: 250 DPRLYASAKKKKKKKPKMSLKESFKYLLSSRYLLLIAILVISYGISINLVEVVWKAKVKE 309

Query: 303 LYPTQNSYAQFMGQFIQWTGIVTIVFMILGSNILKSFRWFTSAIITPLMILITGGGFFVF 362
           LYPT N Y  FMG+F  WTGIVTI+FM+LGSNI++ F W T+A+ITPL++LITG  FF F
Sbjct: 310 LYPTPNEYNAFMGKFSTWTGIVTILFMLLGSNIIRKFGWTTAALITPLVLLITGILFFSF 369

Query: 363 VIFEDALLPFTEDVIKLVPLALAVFLGSLQNVLSKATKYTMFDSTKEMAFIPLDDEFRTK 422
           +IFE  L           PLALAV +G++QN+LSK+ KY++FD+TKEMA+IPLDDE +TK
Sbjct: 370 IIFEKHLGGIFAGFFGTTPLALAVLIGAIQNILSKSAKYSLFDATKEMAYIPLDDELKTK 429

Query: 423 GKAVVDVIGGRMAKSGGAVIQSFIFMLFPMATFSSIVPYLAVFFLCLMFIWIYVVNQLSK 482
           GKA +DVIG R+ KSGG++IQ  + ++FP  + +SI PYLAV F+ ++ +WI+ V  L+K
Sbjct: 430 GKAAIDVIGARLGKSGGSLIQQGLLIIFPTGSLASITPYLAVIFIVIIIVWIFAVKSLNK 489

Query: 483 EY 484
           +Y
Sbjct: 490 QY 491


>gnl|CDD|33015 COG3202, COG3202, ATP/ADP translocase [Energy production and
           conversion].
          Length = 509

 Score =  442 bits (1138), Expect = e-124
 Identities = 241/488 (49%), Positives = 339/488 (69%), Gaps = 10/488 (2%)

Query: 13  KIWQVFCAVKMSEAKKFIPMTLMMFLVLFNFSTLRPIKDSLVVPHMGAEIISFVKLWCVF 72
           K+      ++  E KKF+P+ L+ F +LFN++ LR +KDSLVV   GAE ISF+K W V 
Sbjct: 13  KLRSRLWPIRRYELKKFLPLALLFFCILFNYNLLRSLKDSLVVTRQGAESISFLKTWGVL 72

Query: 73  PSAILFTILYMKLSNILETEKLFYVVVSFFVSFFAIFAFLLYPYRDFLHPSPESIRALAS 132
           PSA++FTI+Y KL NIL  EK+FY+++ FF+ FFA+FAF++YPY+D LHP PE  R L +
Sbjct: 73  PSAVIFTIIYQKLLNILTREKVFYIILGFFLGFFALFAFVIYPYKDILHPDPEFSRDLFA 132

Query: 133 SWP-YLKWFIYLAGKWSFALFYVFAELWGAVMINLMFWQFANRITKTEEATRFYATFGLV 191
             P +LKWFI + G+WS++LFY+ AELWG+++++L+FWQFAN IT  EEA RFY  FGL 
Sbjct: 133 DLPMFLKWFILIVGEWSYSLFYIMAELWGSLVLSLLFWQFANEITTIEEAKRFYPLFGLG 192

Query: 192 GNVGLIFAGGIVKTFSKL-------TNELMIYYSMLTLILSSILLMAVYRWMNLYVLTDP 244
            N+ L+ +G +    SK          +L++    + +++  I+ + +YR++N  VLTDP
Sbjct: 193 ANISLLLSGEVTSWLSKHRDALASEFKDLLLQILFIVIVILGIIAILLYRYINRNVLTDP 252

Query: 245 QQYSPKRGSVKK-KLKLSVLESLRMALNSKYLGYLVLLVICYGTAINLVEGPWKEKVRQL 303
             Y   +   KK KLKL ++ES +M L SKYLG + LLV+ YG +INLVEG WK  +++L
Sbjct: 253 LFYLRAKKKKKKKKLKLGLIESFKMILRSKYLGAIALLVLAYGVSINLVEGVWKSGIKEL 312

Query: 304 YPTQNSYAQFMGQFIQWTGIV-TIVFMILGSNILKSFRWFTSAIITPLMILITGGGFFVF 362
           YPT N Y  FMG+F  WTG+V  +VF+  GSN+++   WFT A+ITPL++LITG  FF F
Sbjct: 313 YPTTNEYTAFMGRFQIWTGVVSLVVFLFPGSNLIRRVGWFTGALITPLVMLITGVLFFGF 372

Query: 363 VIFEDALLPFTEDVIKLVPLALAVFLGSLQNVLSKATKYTMFDSTKEMAFIPLDDEFRTK 422
             F +++      ++   PL LAV++G +QNVLSK TKY++FD+TKEMA+IPLD E+RTK
Sbjct: 373 AFFNNSIGSIFGGILGSPPLVLAVYIGGIQNVLSKITKYSLFDATKEMAYIPLDPEYRTK 432

Query: 423 GKAVVDVIGGRMAKSGGAVIQSFIFMLFPMATFSSIVPYLAVFFLCLMFIWIYVVNQLSK 482
           GKA VDVIGG++ KS G++IQS +F++FP A   +I P LAV F+ +  +WIY V  L+K
Sbjct: 433 GKAAVDVIGGKLGKSIGSLIQSLLFIIFPTADVRAISPVLAVIFIIICVLWIYAVKYLNK 492

Query: 483 EYTQLISK 490
           EY   I +
Sbjct: 493 EYQAAIQR 500


>gnl|CDD|36935 KOG1724, KOG1724, KOG1724, SCF ubiquitin ligase, Skp1 component
           [Posttranslational modification, protein turnover,
           chaperones].
          Length = 162

 Score = 31.4 bits (71), Expect = 0.58
 Identities = 24/101 (23%), Positives = 42/101 (41%), Gaps = 13/101 (12%)

Query: 220 LTLILSSILLMAVYRWMNLYVLTDPQ----QYSPKRGSVKK------KLKLSVLESLRMA 269
           L  + S IL   V  W   +   DP     +  P+   + +      K+    L  L +A
Sbjct: 48  LPNVTSKILKK-VIEWCKKHKDDDPANPEDKELPEETDIPEWDAEFLKVDQGTLFDLILA 106

Query: 270 LNSKYLGYLVLLVICYGTAINLVEGPWKEKVRQLYPTQNSY 310
            N  YL    LL +   T  N+++G   E++R+++  +N  
Sbjct: 107 AN--YLDIKGLLDLTCKTVANMIKGKTPEEIREIFNIENDE 145


>gnl|CDD|133019 cd02538, G1P_TT_short, G1P_TT_short is the short form of
           glucose-1-phosphate thymidylyltransferase.  This family
           is the short form of glucose-1-phosphate
           thymidylyltransferase.  Glucose-1-phosphate
           thymidylyltransferase catalyses the formation of
           dTDP-glucose, from dTTP and glucose 1-phosphate. It is
           the first enzyme in the biosynthesis of dTDP-L-rhamnose,
           a cell wall constituent and a feedback inhibitor of the
           enzyme.There are two forms of   Glucose-1-phosphate
           thymidylyltransferase in bacteria and archeae; short
           form and long form. The homotetrameric, feedback
           inhibited short form is found in numerous bacterial
           species that produce dTDP-L-rhamnose. The long form,
           which has an extra 50 amino acids c-terminal, is found
           in many species for which it serves as a
           sugar-activating enzyme for antibiotic biosynthesis and
           or other, unknown pathways, and in which dTDP-L-rhamnose
           is not necessarily produced.
          Length = 240

 Score = 28.7 bits (65), Expect = 4.3
 Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 11/44 (25%)

Query: 195 GLIFAGG-------IVKTFSK----LTNELMIYYSMLTLILSSI 227
           G+I AGG       + K  SK    + ++ MIYY + TL+L+ I
Sbjct: 3   GIILAGGSGTRLYPLTKVVSKQLLPVYDKPMIYYPLSTLMLAGI 46


>gnl|CDD|34598 COG4993, Gcd, Glucose dehydrogenase [Carbohydrate transport and
           metabolism].
          Length = 773

 Score = 28.4 bits (63), Expect = 4.3
 Identities = 16/58 (27%), Positives = 21/58 (36%), Gaps = 12/58 (20%)

Query: 129 ALASSWPYL---------KWFIYL---AGKWSFALFYVFAELWGAVMINLMFWQFANR 174
           AL  SW YL          W +     A  W +AL  +   +W    +   FWQ   R
Sbjct: 26  ALGGSWYYLIAGLVLLLSAWLLLRRKRAALWLYALVLLGTLVWAVWEVGFDFWQLGPR 83


>gnl|CDD|34800 COG5201, SKP1, SCF ubiquitin ligase, SKP1 component
           [Posttranslational modification, protein turnover,
           chaperones].
          Length = 158

 Score = 28.1 bits (62), Expect = 5.4
 Identities = 17/102 (16%), Positives = 36/102 (35%), Gaps = 8/102 (7%)

Query: 217 YSMLTLILSSILLMAVYRWMNLYVLTDPQQYSPKRGSVKKKLKLSVLESLR--------M 268
           Y +    + S +LM V  WM  +  +  +  +       K         +         +
Sbjct: 39  YPIPAPNVRSSVLMKVQEWMEHHTSSLSEDENDLEIRKSKPSDFWDRFFMEVDQEMLLEI 98

Query: 269 ALNSKYLGYLVLLVICYGTAINLVEGPWKEKVRQLYPTQNSY 310
            L + YL    LL +       ++ G   E++R+ +  +N +
Sbjct: 99  CLAANYLEIKPLLDLGCKIVAEMIRGKSPEEIRETFNIENDF 140


>gnl|CDD|177252 MTH00209, ND5, NADH dehydrogenase subunit 5; Provisional.
          Length = 564

 Score = 27.7 bits (62), Expect = 7.4
 Identities = 23/159 (14%), Positives = 55/159 (34%), Gaps = 15/159 (9%)

Query: 333 SNILKSFRWFTSAIITPLMILITGGGFFVFVIFEDALLPFTEDVIKLVPLALAVFLGSLQ 392
           ++     +     ++   +  ITGG    +V+            +KL+P+ L +F   L 
Sbjct: 406 NSSFDQNKLNLKPMLVLTLGSITGGSVMSWVMVPSVNSVVLPWFLKLLPIMLILFGVLLM 465

Query: 393 NVLSKAT-----KYTMFDSTKEMAFIP-------LDDEFRTKGKAVVDVIGGRMAKSGGA 440
            ++ K        Y +     +M F+P            +     +  +  G + K  G 
Sbjct: 466 YMVLKKNFFLIKGYKVNYFLSQMWFLPDLSSQPVNKFTMKLSKTMLKLLDQGWVEKMSGQ 525

Query: 441 ---VIQSFIFMLFPMATFSSIVPYLAVFFLCLMFIWIYV 476
               +      L  +   +S+  ++    L L+ + +++
Sbjct: 526 GSFKVLKKSSKLSQIIQNNSLKLFVTFMMLILLGVILFM 564


  Database: CddA
    Posted date:  Feb 4, 2011  9:38 PM
  Number of letters in database: 6,263,737
  Number of sequences in database:  21,609
  
Lambda     K      H
   0.331    0.142    0.436 

Gapped
Lambda     K      H
   0.267   0.0758    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 6,100,314
Number of extensions: 349520
Number of successful extensions: 1893
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1836
Number of HSP's successfully gapped: 202
Length of query: 491
Length of database: 6,263,737
Length adjustment: 98
Effective length of query: 393
Effective length of database: 4,146,055
Effective search space: 1629399615
Effective search space used: 1629399615
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 59 (26.4 bits)