RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddB
21,608 sequences; 5,994,473 total letters
Searching..................................................done
Query= gi|254780323|ref|YP_003064736.1| ATP/ADP translocase
[Candidatus Liberibacter asiaticus str. psy62]
(491 letters)
>gnl|CDD|162032 TIGR00769, AAA, ADP/ATP carrier protein family. These proteins are
members of the ATP:ADP Antiporter (AAA) Family (TC
2.A.12), which consists of nucleotide transporters that
have 12 GES predicted transmembrane regions. One protein
from Rickettsia prowazekii functions to take up ATP from
the eukaryotic cell cytoplasm into the bacterium in
exchange for ADP. Five AAA family paralogues are encoded
within the genome of R. prowazekii. This organism
transports UMP and GMP but not CMP, and it seems likely
that one or more of the AAA family paralogues are
responsible. The genome of Chlamydia trachomatis encodes
two AAA family members, Npt1 and Npt2, which catalyse
ATP/ADP exchange and GTP, CTP, ATP and UTP uptake
probably employing a proton symport mechanism. Two
homologous adenylate translocators of Arabidopsis
thaliana are postulated to be localized to the
intracellular plastid membrane where they function as
ATP importers.
Length = 472
Score = 475 bits (1225), Expect = e-135
Identities = 220/475 (46%), Positives = 317/475 (66%), Gaps = 14/475 (2%)
Query: 21 VKMSEAKKFIPMTLMMFLVLFNFSTLRPIKDSLVV--PHMGAEIISFVKLWCVFPSAILF 78
+++ E KKF+P+ LM F +LFN++ LR KD+LVV GAEII F+K W V P A++F
Sbjct: 1 IEVHELKKFLPLFLMFFCILFNYTILRDTKDTLVVTAKGSGAEIIPFLKTWVVVPMAVIF 60
Query: 79 TILYMKLSNILETEKLFYVVVSFFVSFFAIFAFLLYPYRDFLHPSPESIRALASSWPYLK 138
++Y KLSNIL E LFY V+S F+ FFA+FAF++YP D LHP+ + + L+ P
Sbjct: 61 MLIYTKLSNILSKEALFYTVISPFLGFFALFAFVIYPLSDLLHPTALADKLLSLLPPGFM 120
Query: 139 WFIYLAGKWSFALFYVFAELWGAVMINLMFWQFANRITKTEEATRFYATFGLVGNVGLIF 198
FI + WSFALFYV AELWG+V+++L+FW FAN+IT +EA RFYA FGL NV LIF
Sbjct: 121 GFIAILRIWSFALFYVMAELWGSVVLSLLFWGFANQITTIDEAKRFYALFGLGANVALIF 180
Query: 199 AGGIVKTFSKLTNEL---------MIYYSMLTLILSSILLMAVYRWMNLYVLTDPQQYSP 249
+G +K FSKL L + M+ +I S + ++ +Y W+N VLTDP+ Y+P
Sbjct: 181 SGRTIKYFSKLRASLGPGVDGWHVSLKNLMVIVICSGLAIILLYWWVNRNVLTDPRSYNP 240
Query: 250 KRGSVKKKLKLSVLESLRMALNSKYLGYLVLLVICYGTAINLVEGPWKEKVRQLYPTQNS 309
K K K+S +ESL+ ++S Y+ L LLVI YG +INLVE WK K++ YP+ N
Sbjct: 241 ALKEKKVKPKMSTMESLKFLVSSPYILDLALLVIAYGISINLVEVTWKSKLKAQYPSPNE 300
Query: 310 YAQFMGQFIQWTGIVTIVFMILGSNILKSFRWFTSAIITPLMILITGGGFFVFVIFEDAL 369
Y+ FMG F WTG+V++ M+L N+++ + W T+A+ITPL++L+TG FF + F
Sbjct: 301 YSAFMGDFSTWTGVVSVTMMLLSGNVIRKYGWLTAALITPLVMLLTGVAFFSLIFFGGPA 360
Query: 370 LPFTEDVIKLVPLALAVFLGSLQNVLSKATKYTMFDSTKEMAFIPLDDEFRTKGKAVVDV 429
P + + PL LAV++G++QN+LSK+TKY++FD+TKEMA+IPLD+E + KGKA +DV
Sbjct: 361 APLVA-KLGMTPLLLAVYVGAIQNILSKSTKYSLFDATKEMAYIPLDEEQKVKGKAAIDV 419
Query: 430 IGGRMAKSGGAVIQSFIFMLFPMATFSSIVPYLAVFFLCLMFIWIYVVNQLSKEY 484
+ R+ KSGGA+IQ + ++F + ++ PYLAV L ++ W+ L+KE+
Sbjct: 420 VAARLGKSGGALIQQGLLVIFG--SLAASTPYLAVILLIIVTAWLAAAKSLNKEF 472
>gnl|CDD|173189 PRK14726, PRK14726, bifunctional preprotein translocase subunit
SecD/SecF; Provisional.
Length = 855
Score = 31.6 bits (72), Expect = 0.42
Identities = 21/36 (58%), Positives = 23/36 (63%), Gaps = 6/36 (16%)
Query: 438 GGAVIQSFIF-MLFPMA--TFSSI---VPYLAVFFL 467
GG VI+SF F MLF +A TFSSI P L VF L
Sbjct: 794 GGEVIRSFTFAMLFGVAVGTFSSIYIAAPVLIVFKL 829
>gnl|CDD|163126 TIGR03074, PQQ_membr_DH, membrane-bound PQQ-dependent
dehydrogenase, glucose/quinate/shikimate family. This
protein family has a phylogenetic distribution very
similar to that coenzyme PQQ biosynthesis enzymes, as
shown by partial phylogenetic profiling. Members of this
family have several predicted transmembrane helices in
the N-terminal region, and include the quinoprotein
glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli
and the quinate/shikimate dehydrogenase of Acinetobacter
sp. ADP1 (EC 1.1.99.25). Sequences closely related
except for the absense of the N-terminal hydrophobic
region, scoring in the gray zone between the trusted and
noise cutoffs, include PQQ-dependent glycerol (EC
1.1.99.22) and and other polyol (sugar alcohol)
dehydrogenases.
Length = 764
Score = 30.7 bits (70), Expect = 0.83
Identities = 27/137 (19%), Positives = 40/137 (29%), Gaps = 41/137 (29%)
Query: 129 ALASSWPYL---------KWFIYL---AGKWSFALFYVFAELWGAVMINLMFWQFANRIT 176
AL SW YL W ++ AG W +A + +W + L FW R+
Sbjct: 4 ALGGSWYYLLAGLALLLSAWLLFRRRPAGLWLYAALLLGTLIWALWEVGLDFWPLIPRL- 62
Query: 177 KTEEATRFYATFGLVGNVGLIFAGGIVKTFSKLTNELMIY-----YSMLTLILSSILLMA 231
GLI G+ + L +L+ +L A
Sbjct: 63 ------------------GLIAVLGLWLLLPWVRRPRSRGPARRGAGALAGVLAVAVLAA 104
Query: 232 VYRWMNLYVLTDPQQYS 248
+ TDP
Sbjct: 105 LASM-----FTDPHPIV 116
>gnl|CDD|162366 TIGR01448, recD_rel, helicase, putative, RecD/TraA family. This
model describes a family similar to RecD, the
exodeoxyribonuclease V alpha chain of TIGR01447. Members
of this family, however, are not found in a context of
RecB and RecC and are longer by about 200 amino acids at
the amino end. Chlamydia muridarum has both a member of
this family and a RecD.
Length = 720
Score = 28.6 bits (64), Expect = 4.1
Identities = 10/39 (25%), Positives = 18/39 (46%)
Query: 176 TKTEEATRFYATFGLVGNVGLIFAGGIVKTFSKLTNELM 214
++E Y + + VG A IVKTF + +++
Sbjct: 74 PTSKEGIVAYLSSRSIKGVGKKLAQRIVKTFGEAAFDVL 112
>gnl|CDD|129374 TIGR00273, TIGR00273, iron-sulfur cluster-binding protein. Members
of this family have a perfect 4Fe-4S binding motif
C-x(2)-C-x(2)-C-x(3)-CP followed by either a perfect or
imperfect (the first Cys replaced by Ser) second copy.
Members probably bind two 4fe-4S iron-sulfur clusters.
Length = 432
Score = 28.3 bits (63), Expect = 4.5
Identities = 17/57 (29%), Positives = 23/57 (40%), Gaps = 10/57 (17%)
Query: 374 EDVIK--LVPLALAVFLGSLQNVLSKATKYTMFDSTKEMAFIPLD--------DEFR 420
E V+K L A+ L + NVL+ + D +E I LD EFR
Sbjct: 234 ELVLKSMLARSAVGTRLTAYINVLTGPRQEGDVDGPEEFHLILLDNGRSNILATEFR 290
>gnl|CDD|132235 TIGR03191, benz_CoA_bzdO, benzoyl-CoA reductase, bzd-type, O
subunit. Members of this family are the O subunit of
one of two related types of four-subunit ATP-dependent
benzoyl-CoA reductase. This enzyme system catalyzes the
dearomatization of benzoyl-CoA, a common intermediate in
pathways for the degradation for a number of different
aromatic compounds, such as phenol and toluene.
Length = 430
Score = 28.0 bits (62), Expect = 5.4
Identities = 24/81 (29%), Positives = 31/81 (38%), Gaps = 18/81 (22%)
Query: 125 ESIRALASS---WPYLKWFIYLA--GKWSFALFYVFA----------ELWGAVMINLMFW 169
E R ++ + WP+LK F YL G S Y FA WGA + W
Sbjct: 258 ERCRLMSDTQPPWPFLKIFRYLETYGAVSIGSLYTFALEGIWEDKEDGSWGA---RTLPW 314
Query: 170 QFANRITKTEEATRFYATFGL 190
+ I A R YA + L
Sbjct: 315 EKGIEINDRATALRLYADWNL 335
>gnl|CDD|162104 TIGR00915, 2A0602, The (Largely Gram-negative Bacterial)
Hydrophobe/Amphiphile Efflux-1 (HAE1) Family. This
family is one of several subfamilies within the scope of
pfam model pfam00873.
Length = 1044
Score = 27.8 bits (62), Expect = 6.1
Identities = 33/147 (22%), Positives = 52/147 (35%), Gaps = 31/147 (21%)
Query: 331 LGSNILKSFRWFTSAIITPLMILITGGGFFVFVIFEDALLPFTED---VIKLVPLALAVF 387
+G + + R+ + +L+ GG ++FV + LP ED + +V L
Sbjct: 531 VGKILKRRGRYLL------VYVLLVGGMVWLFVRLPTSFLP-DEDQGVFMTIVQLPAGAT 583
Query: 388 LGSLQNVLSKATKYTMFDSTKE--------------------MAFIPLDD-EFRTKGKAV 426
Q VL++ KY + MAFI L D E RT +
Sbjct: 584 AERTQKVLAQVEKYLLAKEKANVESVFTVNGFSFAGRGQNSGMAFIRLKDWEERTGKENS 643
Query: 427 VDVIGGRMAKSGGAVIQSFIFMLFPMA 453
V I GR + + + P A
Sbjct: 644 VFAIAGRATGHFSQIKDAMVIAFNPPA 670
>gnl|CDD|185589 PTZ00386, PTZ00386, formyl tetrahydrofolate synthetase;
Provisional.
Length = 625
Score = 27.5 bits (61), Expect = 7.2
Identities = 12/24 (50%), Positives = 17/24 (70%)
Query: 252 GSVKKKLKLSVLESLRMALNSKYL 275
GS + K+KLSVL+ L + N KY+
Sbjct: 48 GSTRAKVKLSVLKRLENSPNGKYV 71
>gnl|CDD|183871 PRK13146, hisH, imidazole glycerol phosphate synthase subunit HisH;
Provisional.
Length = 209
Score = 27.4 bits (62), Expect = 9.0
Identities = 7/14 (50%), Positives = 9/14 (64%)
Query: 46 LRPIKDSLVVPHMG 59
+P +L VPHMG
Sbjct: 113 FQPDGPALKVPHMG 126
Database: CddB
Posted date: Feb 4, 2011 9:54 PM
Number of letters in database: 5,994,473
Number of sequences in database: 21,608
Lambda K H
0.331 0.142 0.436
Gapped
Lambda K H
0.267 0.0744 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 7,968,488
Number of extensions: 531556
Number of successful extensions: 1853
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1838
Number of HSP's successfully gapped: 109
Length of query: 491
Length of database: 5,994,473
Length adjustment: 97
Effective length of query: 394
Effective length of database: 3,898,497
Effective search space: 1536007818
Effective search space used: 1536007818
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 59 (26.5 bits)