RPS-BLAST 2.2.22 [Sep-27-2009]

Database: pdb70 
           24,244 sequences; 5,693,230 total letters

Searching..................................................done

Query= gi|254780323|ref|YP_003064736.1| ATP/ADP translocase
[Candidatus Liberibacter asiaticus str. psy62]
         (491 letters)



>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl reductase,
           beta-ketoacyl synthase, dehydratase; 4.00A
           {Saccharomyces cerevisiae}
          Length = 2006

 Score = 47.6 bits (113), Expect = 6e-06
 Identities = 88/555 (15%), Positives = 148/555 (26%), Gaps = 269/555 (48%)

Query: 37  FLV----LFNFSTLRPIKD----SLVVPHMGA----EIISFVKLWCVFPSAILFTILYMK 84
            LV     F  S L+   +     L  P  G     E  +  +L   F   + +    ++
Sbjct: 20  LLVPTASFFIASQLQ---EQFNKILPEPTEGFAADDEPTTPAELVGKF---LGYVSSLVE 73

Query: 85  LSNILETEKLFYVVVSFFVSFFAIFAFLLYPYRDFLHPSPESIRALASSWP--------- 135
            S + + +++  + ++ F                +L      I ALA+            
Sbjct: 74  PSKVGQFDQVLNLCLTEFE-------------NCYL--EGNDIHALAAKLLQENDTTLVK 118

Query: 136 ---YLKWFIY-----LAGKWSF------ALFYVFAELWGAVMINLMFWQFANRITKTEEA 181
               +K   Y     +A +  F      ALF                     R      A
Sbjct: 119 TKELIK--NYITARIMAKR-PFDKKSNSALF---------------------RAVGEGNA 154

Query: 182 TRFYATFGLVGNVGLIFAGGIVKTFSKLTNEL-MIY--Y-SMLTLILSSI--LL------ 229
            +  A FG  GN    F             EL  +Y  Y  ++  ++      L      
Sbjct: 155 -QLVAIFGGQGNTDDYF------------EELRDLYQTYHVLVGDLIKFSAETLSELIRT 201

Query: 230 -----------MAVYRWMNLYVLTDPQQYSPKRGSVKKKLKLSVLESLRMALNSKYLGYL 278
                      + +  W     L +P   +P +  +     LS+  S  +      +G +
Sbjct: 202 TLDAEKVFTQGLNILEW-----LENPSN-TPDKDYL-----LSIPISCPL------IGVI 244

Query: 279 VLL---VICYGTAINLVEGPWKEKVRQLYPTQNSYAQFMGQF---IQWT-----GIVTIV 327
            L    V                K+    P         G+    ++       G+VT V
Sbjct: 245 QLAHYVVTA--------------KLLGFTP---------GELRSYLKGATGHSQGLVTAV 281

Query: 328 FMILGSNILKSFRWFTSAIITPLMILITGGGFFVFV--------------IFEDAL---- 369
             I  +    S+  F  ++   + +L     FF+ V              I ED+L    
Sbjct: 282 A-IAET---DSWESFFVSVRKAITVL-----FFIGVRCYEAYPNTSLPPSILEDSLENNE 332

Query: 370 ---------------------------LPFTEDV-IKLV-----------PLALAVFLGS 390
                                      LP  + V I LV           P +L     +
Sbjct: 333 GVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLT 392

Query: 391 LQNVLSKATKYTMFDSTKEMAFIPLDDEFRTKGKAVVDVIGGRMAKSGGAVIQSFIFMLF 450
           L+    KA       S  + + IP    F ++ K                         F
Sbjct: 393 LRKA--KA------PSGLDQSRIP----F-SERKLK-------------------FSNRF 420

Query: 451 -PMAT-FSSIVPYLA 463
            P+A+ F S    L 
Sbjct: 421 LPVASPFHS--HLLV 433



 Score = 31.1 bits (70), Expect = 0.64
 Identities = 41/269 (15%), Positives = 75/269 (27%), Gaps = 103/269 (38%)

Query: 214 MIYYSMLTLILS------SILLMAVYRWMNLYVLTD------PQQYSPKRGSVKKKLKLS 261
           M  YS   L LS       +L+     +     L +      P+   P  G        +
Sbjct: 1   MDAYSTRPLTLSHGSLEHVLLVPTAS-FFIASQLQEQFNKILPE---PTEGFAADDEPTT 56

Query: 262 VLESLRMALNSKYLGYLVLLVICYGTAINLVEGPWKEKVRQLYP--TQNSYAQFMGQFIQ 319
             E     L  K+LGY+           +LVE          +         +F   +++
Sbjct: 57  PAE-----LVGKFLGYV----------SSLVE----PSKVGQFDQVLNLCLTEFENCYLE 97

Query: 320 WTGIVTIVFMILGSN---------ILKSF------------RWFTSAIITPLMILITGGG 358
              I  +   +L  N         ++K++            +   SA    L   +  G 
Sbjct: 98  GNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSA----LFRAVGEGN 153

Query: 359 FFVFVIF------EDAL--L--------PFTEDVIKLVPLALAVFLGSLQNVLSKATKYT 402
             +  IF      +D    L            D+IK        F     + L + T   
Sbjct: 154 AQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIK--------FSAETLSELIRTTLDA 205

Query: 403 MFDSTKEMAFIPLDDEFRTKGKAVVDVIG 431
                         ++  T+G   ++++ 
Sbjct: 206 --------------EKVFTQG---LNILE 217


>3dci_A Arylesterase; SGNH_hydrolase subfamily, structural genomics, PSI-2,
           protein structure initiative; HET: MSE; 2.00A
           {Agrobacterium tumefaciens str}
          Length = 232

 Score = 28.4 bits (62), Expect = 4.3
 Identities = 5/37 (13%), Positives = 12/37 (32%), Gaps = 1/37 (2%)

Query: 103 VSFFAIFAFLLYPYRDFLHPSPESIRALASS-WPYLK 138
             FF   +       D +H    +  A+  +    ++
Sbjct: 191 HHFFDAGSVASASPVDGVHLDASATAAIGRALAAPVR 227


>1mhs_A Proton pump, plasma membrane ATPase; ION transport, membrane
           protein, P-type ATPase, active transport, cryo-electron
           microscopy; 8.00A {Neurospora crassa} SCOP: i.18.1.1
          Length = 920

 Score = 27.4 bits (60), Expect = 8.3
 Identities = 13/56 (23%), Positives = 24/56 (42%), Gaps = 3/56 (5%)

Query: 305 PTQNSYAQFMGQFIQWTGIVTIVFMILGSNILKSFRWFTSAIITPLMILITGGGFF 360
             +N + +F+G F+     V     +L +  L+   W    +I  L++L    GF 
Sbjct: 108 EKENHFLKFLGFFVGPIQFVMEGAAVL-AAGLED--WVDFGVICGLLLLNAVVGFV 160


  Database: pdb70
    Posted date:  Jan 26, 2011 11:21 AM
  Number of letters in database: 5,693,230
  Number of sequences in database:  24,244
  
Lambda     K      H
   0.331    0.142    0.436 

Gapped
Lambda     K      H
   0.267   0.0455    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 4,091,920
Number of extensions: 185762
Number of successful extensions: 643
Number of sequences better than 10.0: 1
Number of HSP's gapped: 638
Number of HSP's successfully gapped: 36
Length of query: 491
Length of database: 5,693,230
Length adjustment: 96
Effective length of query: 395
Effective length of database: 3,365,806
Effective search space: 1329493370
Effective search space used: 1329493370
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 59 (27.2 bits)