RPS-BLAST 2.2.22 [Sep-27-2009] Database: pdb70 24,244 sequences; 5,693,230 total letters Searching..................................................done Query= gi|254780323|ref|YP_003064736.1| ATP/ADP translocase [Candidatus Liberibacter asiaticus str. psy62] (491 letters) >2pff_B Fatty acid synthase subunit beta; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 2006 Score = 47.6 bits (113), Expect = 6e-06 Identities = 88/555 (15%), Positives = 148/555 (26%), Gaps = 269/555 (48%) Query: 37 FLV----LFNFSTLRPIKD----SLVVPHMGA----EIISFVKLWCVFPSAILFTILYMK 84 LV F S L+ + L P G E + +L F + + ++ Sbjct: 20 LLVPTASFFIASQLQ---EQFNKILPEPTEGFAADDEPTTPAELVGKF---LGYVSSLVE 73 Query: 85 LSNILETEKLFYVVVSFFVSFFAIFAFLLYPYRDFLHPSPESIRALASSWP--------- 135 S + + +++ + ++ F +L I ALA+ Sbjct: 74 PSKVGQFDQVLNLCLTEFE-------------NCYL--EGNDIHALAAKLLQENDTTLVK 118 Query: 136 ---YLKWFIY-----LAGKWSF------ALFYVFAELWGAVMINLMFWQFANRITKTEEA 181 +K Y +A + F ALF R A Sbjct: 119 TKELIK--NYITARIMAKR-PFDKKSNSALF---------------------RAVGEGNA 154 Query: 182 TRFYATFGLVGNVGLIFAGGIVKTFSKLTNEL-MIY--Y-SMLTLILSSI--LL------ 229 + A FG GN F EL +Y Y ++ ++ L Sbjct: 155 -QLVAIFGGQGNTDDYF------------EELRDLYQTYHVLVGDLIKFSAETLSELIRT 201 Query: 230 -----------MAVYRWMNLYVLTDPQQYSPKRGSVKKKLKLSVLESLRMALNSKYLGYL 278 + + W L +P +P + + LS+ S + +G + Sbjct: 202 TLDAEKVFTQGLNILEW-----LENPSN-TPDKDYL-----LSIPISCPL------IGVI 244 Query: 279 VLL---VICYGTAINLVEGPWKEKVRQLYPTQNSYAQFMGQF---IQWT-----GIVTIV 327 L V K+ P G+ ++ G+VT V Sbjct: 245 QLAHYVVTA--------------KLLGFTP---------GELRSYLKGATGHSQGLVTAV 281 Query: 328 FMILGSNILKSFRWFTSAIITPLMILITGGGFFVFV--------------IFEDAL---- 369 I + S+ F ++ + +L FF+ V I ED+L Sbjct: 282 A-IAET---DSWESFFVSVRKAITVL-----FFIGVRCYEAYPNTSLPPSILEDSLENNE 332 Query: 370 ---------------------------LPFTEDV-IKLV-----------PLALAVFLGS 390 LP + V I LV P +L + Sbjct: 333 GVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLT 392 Query: 391 LQNVLSKATKYTMFDSTKEMAFIPLDDEFRTKGKAVVDVIGGRMAKSGGAVIQSFIFMLF 450 L+ KA S + + IP F ++ K F Sbjct: 393 LRKA--KA------PSGLDQSRIP----F-SERKLK-------------------FSNRF 420 Query: 451 -PMAT-FSSIVPYLA 463 P+A+ F S L Sbjct: 421 LPVASPFHS--HLLV 433 Score = 31.1 bits (70), Expect = 0.64 Identities = 41/269 (15%), Positives = 75/269 (27%), Gaps = 103/269 (38%) Query: 214 MIYYSMLTLILS------SILLMAVYRWMNLYVLTD------PQQYSPKRGSVKKKLKLS 261 M YS L LS +L+ + L + P+ P G + Sbjct: 1 MDAYSTRPLTLSHGSLEHVLLVPTAS-FFIASQLQEQFNKILPE---PTEGFAADDEPTT 56 Query: 262 VLESLRMALNSKYLGYLVLLVICYGTAINLVEGPWKEKVRQLYP--TQNSYAQFMGQFIQ 319 E L K+LGY+ +LVE + +F +++ Sbjct: 57 PAE-----LVGKFLGYV----------SSLVE----PSKVGQFDQVLNLCLTEFENCYLE 97 Query: 320 WTGIVTIVFMILGSN---------ILKSF------------RWFTSAIITPLMILITGGG 358 I + +L N ++K++ + SA L + G Sbjct: 98 GNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSA----LFRAVGEGN 153 Query: 359 FFVFVIF------EDAL--L--------PFTEDVIKLVPLALAVFLGSLQNVLSKATKYT 402 + IF +D L D+IK F + L + T Sbjct: 154 AQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIK--------FSAETLSELIRTTLDA 205 Query: 403 MFDSTKEMAFIPLDDEFRTKGKAVVDVIG 431 ++ T+G ++++ Sbjct: 206 --------------EKVFTQG---LNILE 217 >3dci_A Arylesterase; SGNH_hydrolase subfamily, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.00A {Agrobacterium tumefaciens str} Length = 232 Score = 28.4 bits (62), Expect = 4.3 Identities = 5/37 (13%), Positives = 12/37 (32%), Gaps = 1/37 (2%) Query: 103 VSFFAIFAFLLYPYRDFLHPSPESIRALASS-WPYLK 138 FF + D +H + A+ + ++ Sbjct: 191 HHFFDAGSVASASPVDGVHLDASATAAIGRALAAPVR 227 >1mhs_A Proton pump, plasma membrane ATPase; ION transport, membrane protein, P-type ATPase, active transport, cryo-electron microscopy; 8.00A {Neurospora crassa} SCOP: i.18.1.1 Length = 920 Score = 27.4 bits (60), Expect = 8.3 Identities = 13/56 (23%), Positives = 24/56 (42%), Gaps = 3/56 (5%) Query: 305 PTQNSYAQFMGQFIQWTGIVTIVFMILGSNILKSFRWFTSAIITPLMILITGGGFF 360 +N + +F+G F+ V +L + L+ W +I L++L GF Sbjct: 108 EKENHFLKFLGFFVGPIQFVMEGAAVL-AAGLED--WVDFGVICGLLLLNAVVGFV 160 Database: pdb70 Posted date: Jan 26, 2011 11:21 AM Number of letters in database: 5,693,230 Number of sequences in database: 24,244 Lambda K H 0.331 0.142 0.436 Gapped Lambda K H 0.267 0.0455 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 24244 Number of Hits to DB: 4,091,920 Number of extensions: 185762 Number of successful extensions: 643 Number of sequences better than 10.0: 1 Number of HSP's gapped: 638 Number of HSP's successfully gapped: 36 Length of query: 491 Length of database: 5,693,230 Length adjustment: 96 Effective length of query: 395 Effective length of database: 3,365,806 Effective search space: 1329493370 Effective search space used: 1329493370 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.9 bits) S2: 59 (27.2 bits)