BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780323|ref|YP_003064736.1| ATP/ADP translocase
[Candidatus Liberibacter asiaticus str. psy62]
         (491 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780323|ref|YP_003064736.1| ATP/ADP translocase [Candidatus Liberibacter asiaticus str. psy62]
          Length = 491

 Score =  989 bits (2558), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 491/491 (100%), Positives = 491/491 (100%)

Query: 1   MAHNQKILSVLLKIWQVFCAVKMSEAKKFIPMTLMMFLVLFNFSTLRPIKDSLVVPHMGA 60
           MAHNQKILSVLLKIWQVFCAVKMSEAKKFIPMTLMMFLVLFNFSTLRPIKDSLVVPHMGA
Sbjct: 1   MAHNQKILSVLLKIWQVFCAVKMSEAKKFIPMTLMMFLVLFNFSTLRPIKDSLVVPHMGA 60

Query: 61  EIISFVKLWCVFPSAILFTILYMKLSNILETEKLFYVVVSFFVSFFAIFAFLLYPYRDFL 120
           EIISFVKLWCVFPSAILFTILYMKLSNILETEKLFYVVVSFFVSFFAIFAFLLYPYRDFL
Sbjct: 61  EIISFVKLWCVFPSAILFTILYMKLSNILETEKLFYVVVSFFVSFFAIFAFLLYPYRDFL 120

Query: 121 HPSPESIRALASSWPYLKWFIYLAGKWSFALFYVFAELWGAVMINLMFWQFANRITKTEE 180
           HPSPESIRALASSWPYLKWFIYLAGKWSFALFYVFAELWGAVMINLMFWQFANRITKTEE
Sbjct: 121 HPSPESIRALASSWPYLKWFIYLAGKWSFALFYVFAELWGAVMINLMFWQFANRITKTEE 180

Query: 181 ATRFYATFGLVGNVGLIFAGGIVKTFSKLTNELMIYYSMLTLILSSILLMAVYRWMNLYV 240
           ATRFYATFGLVGNVGLIFAGGIVKTFSKLTNELMIYYSMLTLILSSILLMAVYRWMNLYV
Sbjct: 181 ATRFYATFGLVGNVGLIFAGGIVKTFSKLTNELMIYYSMLTLILSSILLMAVYRWMNLYV 240

Query: 241 LTDPQQYSPKRGSVKKKLKLSVLESLRMALNSKYLGYLVLLVICYGTAINLVEGPWKEKV 300
           LTDPQQYSPKRGSVKKKLKLSVLESLRMALNSKYLGYLVLLVICYGTAINLVEGPWKEKV
Sbjct: 241 LTDPQQYSPKRGSVKKKLKLSVLESLRMALNSKYLGYLVLLVICYGTAINLVEGPWKEKV 300

Query: 301 RQLYPTQNSYAQFMGQFIQWTGIVTIVFMILGSNILKSFRWFTSAIITPLMILITGGGFF 360
           RQLYPTQNSYAQFMGQFIQWTGIVTIVFMILGSNILKSFRWFTSAIITPLMILITGGGFF
Sbjct: 301 RQLYPTQNSYAQFMGQFIQWTGIVTIVFMILGSNILKSFRWFTSAIITPLMILITGGGFF 360

Query: 361 VFVIFEDALLPFTEDVIKLVPLALAVFLGSLQNVLSKATKYTMFDSTKEMAFIPLDDEFR 420
           VFVIFEDALLPFTEDVIKLVPLALAVFLGSLQNVLSKATKYTMFDSTKEMAFIPLDDEFR
Sbjct: 361 VFVIFEDALLPFTEDVIKLVPLALAVFLGSLQNVLSKATKYTMFDSTKEMAFIPLDDEFR 420

Query: 421 TKGKAVVDVIGGRMAKSGGAVIQSFIFMLFPMATFSSIVPYLAVFFLCLMFIWIYVVNQL 480
           TKGKAVVDVIGGRMAKSGGAVIQSFIFMLFPMATFSSIVPYLAVFFLCLMFIWIYVVNQL
Sbjct: 421 TKGKAVVDVIGGRMAKSGGAVIQSFIFMLFPMATFSSIVPYLAVFFLCLMFIWIYVVNQL 480

Query: 481 SKEYTQLISKE 491
           SKEYTQLISKE
Sbjct: 481 SKEYTQLISKE 491


>gi|254781011|ref|YP_003065424.1| orotate phosphoribosyltransferase [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 228

 Score = 26.2 bits (56), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 25/109 (22%), Positives = 47/109 (43%), Gaps = 11/109 (10%)

Query: 300 VRQLYPTQNSYAQFMGQFIQWTGIVTIVFMI-LGSNILKSFRWFTSAIITPLMILITGGG 358
           VR+        +Q  G   +   ++ I  ++ LG+++ +    F   I     I+  G G
Sbjct: 106 VRKKSKKHGQKSQIEGHLFKGARVLVIEDLVTLGNSMFE----FVKVIRDSGGIIQDGIG 161

Query: 359 FFVFVIFEDALLPFTEDVIKLVPLALAVFLGSLQNVLSKATKYTMFDST 407
            F + IF +    F E+ IKL       +L +  ++L+ A K  +F+  
Sbjct: 162 LFFYDIFPEVPARFRENNIKL------HYLATWNDILTIAEKLKIFNHD 204


>gi|254781112|ref|YP_003065525.1| putative amino acid-binding periplasmic ABC transporter protein
           [Candidatus Liberibacter asiaticus str. psy62]
          Length = 274

 Score = 23.5 bits (49), Expect = 7.9,   Method: Compositional matrix adjust.
 Identities = 11/30 (36%), Positives = 19/30 (63%), Gaps = 2/30 (6%)

Query: 90  ETEKLFYVVVSFFVSFFAIFA--FLLYPYR 117
           +  K+F+    FF  FF +F+  F++YP+R
Sbjct: 7   DLRKIFFSKYLFFAPFFILFSYYFVIYPFR 36


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.331    0.142    0.436 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 291,042
Number of Sequences: 1233
Number of extensions: 11468
Number of successful extensions: 49
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 43
Number of HSP's gapped (non-prelim): 12
length of query: 491
length of database: 328,796
effective HSP length: 78
effective length of query: 413
effective length of database: 232,622
effective search space: 96072886
effective search space used: 96072886
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 40 (20.0 bits)