Query gi|254780324|ref|YP_003064737.1| hypothetical protein CLIBASIA_01045 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 61 No_of_seqs 1 out of 3 Neff 1.0 Searched_HMMs 33803 Date Wed Jun 1 11:57:53 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780324.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 >2k21_A Potassium voltage-gate 50.1 9.7 0.00029 19.6 2.0 37 23-59 49-90 (90) 2 >1oe8_A Glutathione S-transfer 21.4 40 0.0012 16.2 1.2 19 37-55 66-84 (85) 3 >3ku3_A Hemagglutinin HA1 chai 20.6 56 0.0017 15.3 1.8 19 2-20 45-63 (75) 4 >2dlb_A YOPT; SR412, X-RAY, NE 20.4 60 0.0018 15.2 2.0 21 5-25 41-61 (80) 5 >2fe8_A PP1AB, ORF1AB, replica 18.0 66 0.0019 14.9 1.7 31 13-43 23-54 (169) 6 >1b48_A GST, mgsta4-4, protein 16.2 41 0.0012 16.1 0.3 19 38-56 63-81 (81) 7 >1v54_L VIIIA, cytochrome C ox 13.5 97 0.0029 14.0 1.7 35 12-46 4-38 (47) 8 >3frk_A QDTB; aminotransferase 12.3 84 0.0025 14.4 1.0 23 38-60 2-24 (136) 9 >1rie_A Rieske iron-sulfur pro 12.1 65 0.0019 15.0 0.4 18 12-29 1-18 (60) 10 >1tw9_A Glutathione S-transfer 11.8 69 0.002 14.8 0.5 18 38-55 60-77 (78) No 1 >>2k21_A Potassium voltage-gated channel subfamily E member; KCNE1, membrane protein, potassium channel, MINK, auxilliary subunit, micelles, ION transport; NMR {Homo sapiens} (A:1-90) Probab=50.06 E-value=9.7 Score=19.59 Aligned_cols=37 Identities=16% Similarity=0.310 Sum_probs=29.1 Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHH Q ss_conf 640168879999986320355799987-----4233466752 Q gi|254780324|r 23 DANVWLLFGVVMVYFSISFSSRIVDYV-----DQKHDLYHDY 59 (61) Q Consensus 23 danvwllfgvvmvyfsisfssrivdyv-----dqkhdlyhdy 59 (61) +.|..+-.=+||-.|++---+-++.|+ +.++|.||-| T Consensus 49 ~~naylYIL~Vm~ffgff~~gImLsYiRSKk~e~~~DPy~~Y 90 (90) T 2k21_A 49 GKLEALYVLMVLGFFGFFTLGIMLSYIRSKKLEHSNDPFNVY 90 (90) T ss_dssp CSSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCTTTTT T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHH T ss_conf 863157999999999999999999877886503679937787 No 2 >>1oe8_A Glutathione S-transferase; schistosomiasis, detoxifying enzyme, prostaglandin D2 synthase, vaccine candidate; HET: GSH; 1.65A {Schistosoma haematobium} (A:1-85) Probab=21.39 E-value=40 Score=16.18 Aligned_cols=19 Identities=26% Similarity=0.305 Sum_probs=15.7 Q ss_pred HHHHHHHHHHHHHHHHHHH Q ss_conf 6320355799987423346 Q gi|254780324|r 37 FSISFSSRIVDYVDQKHDL 55 (61) Q Consensus 37 fsisfssrivdyvdqkhdl 55 (61) +.+.=|.-|++|.++++|| T Consensus 66 ~~l~eS~aI~~yL~~~~~l 84 (85) T 1oe8_A 66 KWMVESLAIARYMAKKHHM 84 (85) T ss_dssp EEEESHHHHHHHHHHHTTC T ss_pred EEEEEHHHHHHHHHHHCCC T ss_conf 4763189999998775034 No 3 >>3ku3_A Hemagglutinin HA1 chain; viral envelope protein, viral fusion protein, envelope protein; HET: NAG; 1.60A {Influenza a virus} PDB: 3ku6_A* 3ku5_A* 1jsm_A* 1jsn_A* 1jso_A* (A:41-89,A:263-288) Probab=20.58 E-value=56 Score=15.34 Aligned_cols=19 Identities=37% Similarity=0.559 Sum_probs=15.1 Q ss_pred CCCCCCEEEEECCCEEEEE Q ss_conf 8521001343047488888 Q gi|254780324|r 2 GNSVNSTILKAEGSIVNIK 20 (61) Q Consensus 2 gnsvnstilkaegsivnik 20 (61) -|+.||.|.|.|...-|-. T Consensus 45 pn~~Ns~imkse~~~~nc~ 63 (75) T 3ku3_A 45 ENPRDSGIMKTEGTLENCE 63 (75) T ss_dssp SSCSBCCEEECSCCEEEEE T ss_pred CCCCCCCEEECCCCCCCCC T ss_conf 7888875572688667734 No 4 >>2dlb_A YOPT; SR412, X-RAY, NESG, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, unknown function; 1.20A {Bacillus subtilis} (A:) Probab=20.42 E-value=60 Score=15.16 Aligned_cols=21 Identities=38% Similarity=0.567 Sum_probs=16.5 Q ss_pred CCCEEEEECCCEEEEEECCCC Q ss_conf 100134304748888842640 Q gi|254780324|r 5 VNSTILKAEGSIVNIKWRDAN 25 (61) Q Consensus 5 vnstilkaegsivnikwrdan 25 (61) -.-..|||.||.-|.|..|.. T Consensus 41 kevsflkadgsvenfklsd~e 61 (80) T 2dlb_A 41 KEVSFLKADGSVENFKLSDXE 61 (80) T ss_dssp SEEEEECTTSCEEEEEEEEEE T ss_pred HHHHEEECCCCEECEEECCCE T ss_conf 343201347862121402325 No 5 >>2fe8_A PP1AB, ORF1AB, replicase polyprotein 1AB; protease, hydrolase; 1.85A {Sars coronavirus} PDB: 3e9s_A* (A:77-178,A:242-308) Probab=17.98 E-value=66 Score=14.95 Aligned_cols=31 Identities=26% Similarity=0.593 Sum_probs=22.5 Q ss_pred CCCEEEEEECCCCHHHHHHHHHHH-HHHHHHH Q ss_conf 474888884264016887999998-6320355 Q gi|254780324|r 13 EGSIVNIKWRDANVWLLFGVVMVY-FSISFSS 43 (61) Q Consensus 13 egsivnikwrdanvwllfgvvmvy-fsisfss 43 (61) .|.++-+||||-|-|+--..+|.- ..|.|.+ T Consensus 23 ~dG~~~LkQrDNNCyINvAivlLQ~lkiKF~~ 54 (169) T 2fe8_A 23 VGGLTSIKWADNNCYLSSVLLALQQLEVKFNA 54 (169) T ss_dssp ETTEECCCCCTTTHHHHHHHHHHHTSCCCBSS T ss_pred ECCEEEEEECCCCCHHHHHHHHHHHCCCCCCC T ss_conf 89999805348966599999998647885688 No 6 >>1b48_A GST, mgsta4-4, protein (glutathione S-transferase); subunit cooperativity; HET: HAG GSH; 2.60A {Mus musculus} (A:1-81) Probab=16.19 E-value=41 Score=16.08 Aligned_cols=19 Identities=26% Similarity=0.551 Sum_probs=15.6 Q ss_pred HHHHHHHHHHHHHHHHHHH Q ss_conf 3203557999874233466 Q gi|254780324|r 38 SISFSSRIVDYVDQKHDLY 56 (61) Q Consensus 38 sisfssrivdyvdqkhdly 56 (61) .|+=|.-|+.|.++++++| T Consensus 63 ~i~eS~aI~~yL~~~~g~~ 81 (81) T 1b48_A 63 MLTQTRAILSYLAAKYNLY 81 (81) T ss_dssp EECCHHHHHHHHHHHTTCS T ss_pred HHHCHHHHHHHHHHHCCCC T ss_conf 0200008999999850468 No 7 >>1v54_L VIIIA, cytochrome C oxidase polypeptide VIIC; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} (L:) Probab=13.54 E-value=97 Score=14.01 Aligned_cols=35 Identities=26% Similarity=0.549 Sum_probs=28.3 Q ss_pred ECCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHH Q ss_conf 04748888842640168879999986320355799 Q gi|254780324|r 12 AEGSIVNIKWRDANVWLLFGVVMVYFSISFSSRIV 46 (61) Q Consensus 12 aegsivnikwrdanvwllfgvvmvyfsisfssriv 46 (61) .||.=.|.-+.-.|-|-|.....+||...|..-.. T Consensus 4 ~egPG~NLPFsv~Nk~rl~~~~~~~fgsGFaaPF~ 38 (47) T 1v54_L 4 EEGPGKNIPFSVENKWRLLAMMTLFFGSGFAAPFF 38 (47) T ss_dssp CCSTTTSSSSCCSSHHHHHHHHHHHHHHHHHHHHH T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCHHH T ss_conf 99998878741420799999999998020243399 No 8 >>3frk_A QDTB; aminotransferase, sugar-modification, natural porduct; HET: TQP; 2.15A {Thermoanaerobacteriumthermosaccharolyticum} (A:1-7,A:245-373) Probab=12.32 E-value=84 Score=14.35 Aligned_cols=23 Identities=22% Similarity=0.479 Sum_probs=17.5 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHC Q ss_conf 32035579998742334667522 Q gi|254780324|r 38 SISFSSRIVDYVDQKHDLYHDYR 60 (61) Q Consensus 38 sisfssrivdyvdqkhdlyhdyr 60 (61) .|||.||+-+.+.++...+.-|. T Consensus 2 ~~~~~~rLd~~~~~R~~~~~~y~ 24 (136) T 3frk_A 2 KISFASYLDKWNEERRKIAQKYI 24 (136) T ss_dssp CBCSCCTHHHHHHHHHHHHHHHH T ss_pred CCCCCCHHHHHHHHHHHHHHHHH T ss_conf 47877879999999999999999 No 9 >>1rie_A Rieske iron-sulfur protein; oxidoreductase, cytochrome BC1 complex, histidine ligands, rieske iron-sulfur cluster, electron transport; 1.50A {Bos taurus} (A:15-74) Probab=12.12 E-value=65 Score=14.98 Aligned_cols=18 Identities=28% Similarity=0.667 Sum_probs=15.3 Q ss_pred ECCCEEEEEECCCCHHHH Q ss_conf 047488888426401688 Q gi|254780324|r 12 AEGSIVNIKWRDANVWLL 29 (61) Q Consensus 12 aegsivnikwrdanvwll 29 (61) .+|..+.++||.--||.+ T Consensus 1 PpGq~~tv~WrGKPVfI~ 18 (60) T 1rie_A 1 PEGKNMAFKWRGKPLFVR 18 (60) T ss_dssp CTTCEEEEEETTEEEEEE T ss_pred CCCCEEEEEECCCEEEEE T ss_conf 999869998699258999 No 10 >>1tw9_A Glutathione S-transferase 2; 1.71A {Heligmosomoides polygyrus} (A:1-78) Probab=11.79 E-value=69 Score=14.82 Aligned_cols=18 Identities=17% Similarity=0.370 Sum_probs=14.5 Q ss_pred HHHHHHHHHHHHHHHHHH Q ss_conf 320355799987423346 Q gi|254780324|r 38 SISFSSRIVDYVDQKHDL 55 (61) Q Consensus 38 sisfssrivdyvdqkhdl 55 (61) .++-|.-|.+|+++++++ T Consensus 60 ~l~eS~~I~~yL~~~~~~ 77 (78) T 1tw9_A 60 QLAQSQAICRYLAKTFGF 77 (78) T ss_dssp EEECHHHHHHHHHHHHTC T ss_pred EHHHHHHHHHHHHHHHCC T ss_conf 010278999999998465 Done!