RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddA 21,609 sequences; 6,263,737 total letters Searching..................................................done Query= gi|254780324|ref|YP_003064737.1| hypothetical protein CLIBASIA_01045 [Candidatus Liberibacter asiaticus str. psy62] (61 letters) >gnl|CDD|33465 COG3667, PcoB, Uncharacterized protein involved in copper resistance [Inorganic ion transport and metabolism]. Length = 321 Score = 30.4 bits (68), Expect = 0.12 Identities = 12/30 (40%), Positives = 17/30 (56%) Query: 2 GNSVNSTILKAEGSIVNIKWRDANVWLLFG 31 G ++ +LKAEG V+ +W A V L G Sbjct: 147 GTDISKLVLKAEGERVDGRWEKAEVEGLKG 176 >gnl|CDD|79364 cd03682, ClC_sycA_like, ClC sycA-like chloride channel proteins. This ClC family presents in bacteria, where it facilitates acid resistance in acidic soil. Mutation of this gene (sycA) in Rhizobium tropici CIAT899 causes serious deficiencies in nodule development, nodulation competitiveness, and N2 fixation on Phaseolus vulgaris plants, due to its reduced ability for acid resistance. This family is part of the ClC chloride channel superfamiy. These proteins catalyse the selective flow of Cl- ions across cell membranes and Cl-/H+ exchange transport. These proteins share two characteristics that are apparently inherent to the entire ClC chloride channel superfamily: a unique double-barreled architecture and voltage-dependent gating mechanism. The gating is conferred by the permeating anion itself, acting as the gating charge.. Length = 378 Score = 23.9 bits (52), Expect = 9.8 Identities = 7/23 (30%), Positives = 14/23 (60%), Gaps = 5/23 (21%) Query: 20 KWRDANVWLLF-----GVVMVYF 37 ++R+A+ WLL G+++ Y Sbjct: 25 EFREAHPWLLPFLPLAGLLIGYL 47 Database: CddA Posted date: Feb 4, 2011 9:38 PM Number of letters in database: 6,263,737 Number of sequences in database: 21,609 Lambda K H 0.325 0.138 0.426 Gapped Lambda K H 0.267 0.0824 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21609 Number of Hits to DB: 750,069 Number of extensions: 28747 Number of successful extensions: 109 Number of sequences better than 10.0: 1 Number of HSP's gapped: 109 Number of HSP's successfully gapped: 5 Length of query: 61 Length of database: 6,263,737 Length adjustment: 33 Effective length of query: 28 Effective length of database: 5,550,640 Effective search space: 155417920 Effective search space used: 155417920 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 51 (23.2 bits)