RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= gi|254780324|ref|YP_003064737.1| hypothetical protein
CLIBASIA_01045 [Candidatus Liberibacter asiaticus str. psy62]
         (61 letters)



>gnl|CDD|117326 pfam08756, YfkB, YfkB-like domain.  This protein is adjacent to
          YfkA in B. subtilis. In other bacterial species it is
          fused to this protein. As YfkA contains a Radical SAM
          domain it suggests this domain is interacts with them.
          Length = 153

 Score = 25.8 bits (57), Expect = 2.5
 Identities = 9/15 (60%), Positives = 11/15 (73%)

Query: 22 RDANVWLLFGVVMVY 36
          RD NVW+LFG +  Y
Sbjct: 29 RDENVWMLFGTLPFY 43


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.325    0.138    0.426 

Gapped
Lambda     K      H
   0.267   0.0800    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 964,729
Number of extensions: 42806
Number of successful extensions: 140
Number of sequences better than 10.0: 1
Number of HSP's gapped: 140
Number of HSP's successfully gapped: 13
Length of query: 61
Length of database: 5,994,473
Length adjustment: 33
Effective length of query: 28
Effective length of database: 5,281,409
Effective search space: 147879452
Effective search space used: 147879452
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 50 (22.9 bits)