RPS-BLAST 2.2.22 [Sep-27-2009]

Database: pdb70 
           24,244 sequences; 5,693,230 total letters

Searching..................................................done

Query= gi|254780324|ref|YP_003064737.1| hypothetical protein
CLIBASIA_01045 [Candidatus Liberibacter asiaticus str. psy62]
         (61 letters)



>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl reductase,
           beta-ketoacyl synthase, dehydratase; 4.00A
           {Saccharomyces cerevisiae}
          Length = 2006

 Score = 26.4 bits (58), Expect = 1.4
 Identities = 6/14 (42%), Positives = 8/14 (57%)

Query: 47  DYVDQKHDLYHDYR 60
           DY ++  DLY  Y 
Sbjct: 168 DYFEELRDLYQTYH 181


>2bde_A Cytosolic IMP-GMP specific 5'-nucleotidase; alpha beta protein,
           structural genomics, PSI, protein structure initiative;
           2.90A {Legionella pneumophila} SCOP: c.108.1.23
          Length = 470

 Score = 25.2 bits (55), Expect = 4.0
 Identities = 9/34 (26%), Positives = 15/34 (44%), Gaps = 3/34 (8%)

Query: 30  FGVVMVYFSISFS---SRIVDYVDQKHDLYHDYR 60
           +  +   FSI+F     ++VD  D   D    Y+
Sbjct: 121 YMAIDTSFSIAFCILYGQLVDLKDTNPDKMPSYQ 154


  Database: pdb70
    Posted date:  Jan 26, 2011 11:21 AM
  Number of letters in database: 5,693,230
  Number of sequences in database:  24,244
  
Lambda     K      H
   0.325    0.138    0.426 

Gapped
Lambda     K      H
   0.267   0.0582    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 525,262
Number of extensions: 16932
Number of successful extensions: 53
Number of sequences better than 10.0: 1
Number of HSP's gapped: 53
Number of HSP's successfully gapped: 4
Length of query: 61
Length of database: 5,693,230
Length adjustment: 32
Effective length of query: 29
Effective length of database: 4,917,422
Effective search space: 142605238
Effective search space used: 142605238
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 50 (23.4 bits)