HHsearch alignment for GI: 254780325 and conserved domain: COG1443
>COG1443 Idi Isopentenyldiphosphate isomerase [Lipid metabolism].
Probab=99.05 E-value=1.4e-09 Score=75.66 Aligned_cols=113 Identities=21% Similarity=0.260 Sum_probs=79.4
Q ss_pred EEEEEEEEEECCCEEEEEEECCC-CCCCCCEEC-CCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCE---EEEEEEECCCC
Q ss_conf 99999999935986999991789-888983822-57310178748899998888762652024420---25566520578
Q gi|254780325|r 10 LLVVACAVFEPGGKVLLSCRPKD-KSHGEFWEF-PGGKIEDGETPEEALTRELFEELAIVVKPFSL---VPLTFISHPYE 84 (141)
Q Consensus 10 ~~vv~~~ii~~~~~iLl~~R~~~-~~~~g~W~l-PGG~ve~gEs~~~a~~REv~EEtgi~~~~~~~---~~~~~~~~~~~ 84 (141)
T Consensus 33 HrAFS~~lFne~g~LLltrRA~~K~twP~vWTNSvCsHP~~~es~~~A~~rRl~~ELGie~~~~d~~~il~rf~YrA~~~ 112 (185)
T COG1443 33 HRAFSSFLFNERGQLLLTRRALSKKTWPGVWTNSVCSHPLPGESNEDAARRRLAYELGIEPDQYDKLEILPRFRYRAADP 112 (185)
T ss_pred HHHHHEEEECCCCCEEEEHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEECCCC
T ss_conf 74310468678886631014453255766343654279868874188999988998399875447402146517863589
Q ss_pred CC---EEEEEEEEEEEE-CCEECCCHHHEEEECCHHHHCCCC
Q ss_conf 86---069999999975-483768823315702778832488
Q gi|254780325|r 85 KF---HLLMPFFVCHCF-EGIPQSCEGQQLQWVALDDLQNYS 122 (141)
Q Consensus 85 ~~---~~~~~~~~~~~~-~~~~~~~E~~~~~Wi~~~el~~~~ 122 (141)
T Consensus 113 ~~~~E~Eic~V~~~~~~~~~~~npdEV~~~~wv~~e~l~~~~ 154 (185)
T COG1443 113 DGIVENEICPVLAARLDSALDPNPDEVMDYRWVSPEDLKEMV 154 (185)
T ss_pred CCCCEEEEEEEEEEEECCCCCCCHHHHHHEECCCHHHHHHHH
T ss_conf 875300241388886137787996886241126899998752