HHsearch alignment for GI: 254780325 and conserved domain: COG1443

>COG1443 Idi Isopentenyldiphosphate isomerase [Lipid metabolism].
Probab=99.05  E-value=1.4e-09  Score=75.66  Aligned_cols=113  Identities=21%  Similarity=0.260  Sum_probs=79.4

Q ss_pred             EEEEEEEEEECCCEEEEEEECCC-CCCCCCEEC-CCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCE---EEEEEEECCCC
Q ss_conf             99999999935986999991789-888983822-57310178748899998888762652024420---25566520578
Q gi|254780325|r   10 LLVVACAVFEPGGKVLLSCRPKD-KSHGEFWEF-PGGKIEDGETPEEALTRELFEELAIVVKPFSL---VPLTFISHPYE   84 (141)
Q Consensus        10 ~~vv~~~ii~~~~~iLl~~R~~~-~~~~g~W~l-PGG~ve~gEs~~~a~~REv~EEtgi~~~~~~~---~~~~~~~~~~~   84 (141)
T Consensus        33 HrAFS~~lFne~g~LLltrRA~~K~twP~vWTNSvCsHP~~~es~~~A~~rRl~~ELGie~~~~d~~~il~rf~YrA~~~  112 (185)
T COG1443          33 HRAFSSFLFNERGQLLLTRRALSKKTWPGVWTNSVCSHPLPGESNEDAARRRLAYELGIEPDQYDKLEILPRFRYRAADP  112 (185)
T ss_pred             HHHHHEEEECCCCCEEEEHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEECCCC
T ss_conf             74310468678886631014453255766343654279868874188999988998399875447402146517863589


Q ss_pred             CC---EEEEEEEEEEEE-CCEECCCHHHEEEECCHHHHCCCC
Q ss_conf             86---069999999975-483768823315702778832488
Q gi|254780325|r   85 KF---HLLMPFFVCHCF-EGIPQSCEGQQLQWVALDDLQNYS  122 (141)
Q Consensus        85 ~~---~~~~~~~~~~~~-~~~~~~~E~~~~~Wi~~~el~~~~  122 (141)
T Consensus       113 ~~~~E~Eic~V~~~~~~~~~~~npdEV~~~~wv~~e~l~~~~  154 (185)
T COG1443         113 DGIVENEICPVLAARLDSALDPNPDEVMDYRWVSPEDLKEMV  154 (185)
T ss_pred             CCCCEEEEEEEEEEEECCCCCCCHHHHHHEECCCHHHHHHHH
T ss_conf             875300241388886137787996886241126899998752