HHsearch alignment for GI: 254780325 and conserved domain: TIGR02150
>TIGR02150 IPP_isom_1 isopentenyl-diphosphate delta-isomerase, type 1; InterPro: IPR011876 This entry represents type 1 of two non-homologous families of the enzyme isopentenyl-diphosphate delta-isomerase (IPP isomerase). IPP is an essential building block for many compounds, including enzyme cofactors, sterols, and prenyl groups. This inzyme interconverts isopentenyl diphosphate and dimethylallyl diphosphate.; GO: 0004452 isopentenyl-diphosphate delta-isomerase activity, 0008299 isoprenoid biosynthetic process.
Probab=97.99 E-value=9.5e-05 Score=47.75 Aligned_cols=114 Identities=21% Similarity=0.299 Sum_probs=73.2
Q ss_pred EEEEEEEEEEECCCEEEEEEECCCC-CCCCCEE-CCCCCCCC---CCC-----------HHHHHHHHHHHHHCCCCCCCC
Q ss_conf 4999999999359869999917898-8898382-25731017---874-----------889999888876265202442
Q gi|254780325|r 9 ILLVVACAVFEPGGKVLLSCRPKDK-SHGEFWE-FPGGKIED---GET-----------PEEALTRELFEELAIVVKPFS 72 (141)
Q Consensus 9 ~~~vv~~~ii~~~~~iLl~~R~~~~-~~~g~W~-lPGG~ve~---gEs-----------~~~a~~REv~EEtgi~~~~~~ 72 (141)
T Consensus 29 LHrAFS~flfn~~~~LL~qrRa~~K~twP~vWTNsCCsHP~~q~~G~l~q~~~~~~~~Gvk~~A~RRl~~~LGi~~~~~~ 108 (190)
T TIGR02150 29 LHRAFSVFLFNDQGRLLLQRRAASKITWPGVWTNSCCSHPLPQTPGTLAQSTLEENVLGVKNAAIRRLLAELGIPADDVD 108 (190)
T ss_pred EEEEEEEEEECCCCCEEEEEECCCCCCCCCCEECCEECCCCCCCCCCCHHCCCCHHHHCCHHHHHHHHHHHCCCCCCCCC
T ss_conf 23136767771898368888401188437840034027878888885101146111103326788878763488512236
Q ss_pred -----EEEEEEEECCC----CC-CEEEEEEEEEEE--ECCE--ECCCHHHEEEECCHHHHCCCC
Q ss_conf -----02556652057----88-606999999997--5483--768823315702778832488
Q gi|254780325|r 73 -----LVPLTFISHPY----EK-FHLLMPFFVCHC--FEGI--PQSCEGQQLQWVALDDLQNYS 122 (141)
Q Consensus 73 -----~~~~~~~~~~~----~~-~~~~~~~~~~~~--~~~~--~~~~E~~~~~Wi~~~el~~~~ 122 (141)
T Consensus 109 ~~~~~~L~~~~Y~A~~~s~g~~G~h~~~~~~~~~~nk~~~~~~PnP~~v~~~~W~~~~~~~~~~ 172 (190)
T TIGR02150 109 VDELTVLPRFSYRARDGSDGAWGIHEVCPVFFARKNKADVPVNPNPPEVAAIKWVSLEVLREVL 172 (190)
T ss_pred HHHHHHCCCCEEEECCCCCCCCCEEEEEEEEEEECCCCCCCCCCCCCHHHEEEECCHHHHHHHH
T ss_conf 7572003473366144345778758511589997234588876897224214402689999984