HHsearch alignment for GI: 254780325 and conserved domain: cd03676
>cd03676 Nudix_hydrolase_3 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belong to this superfamily requires a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate spe
Probab=99.24 E-value=3.1e-10 Score=79.36 Aligned_cols=116 Identities=22% Similarity=0.327 Sum_probs=79.4
Q ss_pred EEEEEEECCCC-CCCCCEE-CCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCC-EEEEEEEEC--CCCC--C-EEEEEEEE
Q ss_conf 69999917898-8898382-25731017874889999888876265202442-025566520--5788--6-06999999
Q gi|254780325|r 23 KVLLSCRPKDK-SHGEFWE-FPGGKIEDGETPEEALTRELFEELAIVVKPFS-LVPLTFISH--PYEK--F-HLLMPFFV 94 (141)
Q Consensus 23 ~iLl~~R~~~~-~~~g~W~-lPGG~ve~gEs~~~a~~REv~EEtgi~~~~~~-~~~~~~~~~--~~~~--~-~~~~~~~~ 94 (141)
T Consensus 49 ~lWv~rRs~~K~~~Pg~~D~~vaGg~~~g~~~~~~~~rE~~EEagi~~~l~~~~~~~G~isy~~~~~~~gl~~e~~~vYd 128 (180)
T cd03676 49 RIWIPRRSPTKATWPGMLDNLVAGGLGHGEGPEETLVKECDEEAGLPEDLVRQLKPVGVVSYLREGEAGGLQPEVEYVYD 128 (180)
T ss_pred EEEEECCCCCCCCCCCCCCCEECCCCCCCCCHHHHHHHHHHHHCCCCHHHHHCCEECEEEEEEEECCCCCCCCCEEEEEE
T ss_conf 99986268987789975301111366799899999999999881999899831551117999987687773553899999
Q ss_pred EEEECC-EECCC--HHHEEEECCHHHHCC----CCCCC-CCHHHHHHHHHHC
Q ss_conf 997548-37688--233157027788324----88973-6989999998721
Q gi|254780325|r 95 CHCFEG-IPQSC--EGQQLQWVALDDLQN----YSMLP-ADLSLISFLRKHA 138 (141)
Q Consensus 95 ~~~~~~-~~~~~--E~~~~~Wi~~~el~~----~~~~~-~~~~ii~~l~~~~ 138 (141)
T Consensus 129 l~lp~d~~P~~~DGEVe~F~l~~v~ev~~~l~~g~Fkpn~alviiDfliRhG 180 (180)
T cd03676 129 LELPPDFIPAPQDGEVESFRLLTIDEVLRALKEGEFKPNCALVTLDFLIRHG 180 (180)
T ss_pred EEECCCCEECCCCCCEEEEEEECHHHHHHHHHCCCCCCCCHHHHHHHHHHCC
T ss_conf 9828996057999866369996599999999739976520889776684069