HHsearch alignment for GI: 254780325 and conserved domain: cd04511

>cd04511 Nudix_Hydrolase_4 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specifici
Probab=99.93  E-value=4e-25  Score=165.25  Aligned_cols=108  Identities=23%  Similarity=0.332  Sum_probs=88.3

Q ss_pred             EEEEEEEECCCEEEEEEECCCCCCCCCEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCCCEEEEE
Q ss_conf             99999993598699999178988898382257310178748899998888762652024420255665205788606999
Q gi|254780325|r   12 VVACAVFEPGGKVLLSCRPKDKSHGEFWEFPGGKIEDGETPEEALTRELFEELAIVVKPFSLVPLTFISHPYEKFHLLMP   91 (141)
Q Consensus        12 vv~~~ii~~~~~iLl~~R~~~~~~~g~W~lPGG~ve~gEs~~~a~~REv~EEtgi~~~~~~~~~~~~~~~~~~~~~~~~~   91 (141)
T Consensus        14 ~~v~~ii~~~~kILLvrR~~~P~-~g~W~lPGG~vE~gEt~eea~~REv~EEtGl~v~~~~~~~v~~----~p~~~~v~~   88 (130)
T cd04511          14 IIVGCVPEWEGKVLLCRRAIEPR-HGFWTLPAGFMENGETTEQGALRETWEEAGARVEIDGLYAVYS----VPHISQVYM   88 (130)
T ss_pred             EEEEEEEEECCEEEEEECCCCCC-CCCEECCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEEEEEEC----CCCCCEEEE
T ss_conf             89999998699999994068999-9958689748658989999999899874097899626999945----787767999


Q ss_pred             EEEEEEECCEECCC-HHHEEEECCHHHHC--CCCCC
Q ss_conf             99999754837688-23315702778832--48897
Q gi|254780325|r   92 FFVCHCFEGIPQSC-EGQQLQWVALDDLQ--NYSML  124 (141)
Q Consensus        92 ~~~~~~~~~~~~~~-E~~~~~Wi~~~el~--~~~~~  124 (141)
T Consensus        89 ~f~~~~~~g~~~~~~E~~e~~wf~~delP~~~lAf~  124 (130)
T cd04511          89 FYRARLLDLDFAPGPESLEVRLFTEEEIPWDELAFP  124 (130)
T ss_pred             EEEEEEECCCCCCCCCEEEEEEECHHHCCHHHCCHH
T ss_conf             999999127679995201677887889970654516