HHsearch alignment for GI: 254780325 and conserved domain: cd04511
>cd04511 Nudix_Hydrolase_4 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specifici
Probab=99.93 E-value=4e-25 Score=165.25 Aligned_cols=108 Identities=23% Similarity=0.332 Sum_probs=88.3
Q ss_pred EEEEEEEECCCEEEEEEECCCCCCCCCEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCCCEEEEE
Q ss_conf 99999993598699999178988898382257310178748899998888762652024420255665205788606999
Q gi|254780325|r 12 VVACAVFEPGGKVLLSCRPKDKSHGEFWEFPGGKIEDGETPEEALTRELFEELAIVVKPFSLVPLTFISHPYEKFHLLMP 91 (141)
Q Consensus 12 vv~~~ii~~~~~iLl~~R~~~~~~~g~W~lPGG~ve~gEs~~~a~~REv~EEtgi~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (141)
T Consensus 14 ~~v~~ii~~~~kILLvrR~~~P~-~g~W~lPGG~vE~gEt~eea~~REv~EEtGl~v~~~~~~~v~~----~p~~~~v~~ 88 (130)
T cd04511 14 IIVGCVPEWEGKVLLCRRAIEPR-HGFWTLPAGFMENGETTEQGALRETWEEAGARVEIDGLYAVYS----VPHISQVYM 88 (130)
T ss_pred EEEEEEEEECCEEEEEECCCCCC-CCCEECCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEEEEEEC----CCCCCEEEE
T ss_conf 89999998699999994068999-9958689748658989999999899874097899626999945----787767999
Q ss_pred EEEEEEECCEECCC-HHHEEEECCHHHHC--CCCCC
Q ss_conf 99999754837688-23315702778832--48897
Q gi|254780325|r 92 FFVCHCFEGIPQSC-EGQQLQWVALDDLQ--NYSML 124 (141)
Q Consensus 92 ~~~~~~~~~~~~~~-E~~~~~Wi~~~el~--~~~~~ 124 (141)
T Consensus 89 ~f~~~~~~g~~~~~~E~~e~~wf~~delP~~~lAf~ 124 (130)
T cd04511 89 FYRARLLDLDFAPGPESLEVRLFTEEEIPWDELAFP 124 (130)
T ss_pred EEEEEEECCCCCCCCCEEEEEEECHHHCCHHHCCHH
T ss_conf 999999127679995201677887889970654516